Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020871.t1 | XP_003617941.2 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.10E-67 | 265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020871.t1 | Q9LYK9 | 83.5 | 127 | 19 | 1 | 1 | 127 | 1 | 125 | 1.5e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020871.t1 | I3S2G2 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 7.7e-68 | 265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08205 | MS.gene020871 | PPI |
| MS.gene059340 | MS.gene020871 | PPI |
| MS.gene020871 | MS.gene067809 | PPI |
| MS.gene59772 | MS.gene020871 | PPI |
| MS.gene016407 | MS.gene020871 | PPI |
| MS.gene049387 | MS.gene020871 | PPI |
| MS.gene016408 | MS.gene020871 | PPI |
| MS.gene51868 | MS.gene020871 | PPI |
| MS.gene38222 | MS.gene020871 | PPI |
| MS.gene83159 | MS.gene020871 | PPI |
| MS.gene013415 | MS.gene020871 | PPI |
| MS.gene81244 | MS.gene020871 | PPI |
| MS.gene38035 | MS.gene020871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020871.t1 | MTR_5g097200 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.03e-92 | 263 |
| MS.gene020871.t1 | MTR_3g094220 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 9.15e-82 | 236 |
| MS.gene020871.t1 | MTR_5g097200 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 5.65e-74 | 216 |
| MS.gene020871.t1 | MTR_3g094220 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 1.26e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020871.t1 | AT2G40590 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 1.51e-68 | 202 |
| MS.gene020871.t1 | AT3G56340 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.17e-68 | 202 |
| MS.gene020871.t1 | AT2G40510 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.19e-68 | 202 |
Find 32 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCAGGCTGACCAGGCCTT+GGG | 0.278097 | 5.4:+76331441 | None:intergenic |
| CAATCAAGAGGTTTCTTGTT+AGG | 0.291662 | 5.4:-76333308 | MS.gene020871:CDS |
| TGACCAGGCTGACCAGGCCT+TGG | 0.293734 | 5.4:+76331440 | None:intergenic |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5.4:-76333271 | MS.gene020871:CDS |
| GGCGCTTGACCAGGCTGACC+AGG | 0.427155 | 5.4:+76331434 | None:intergenic |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5.4:-76333506 | MS.gene020871:CDS |
| GCCCCAAGGCCTGGTCAGCC+TGG | 0.433949 | 5.4:-76331443 | MS.gene020871:CDS |
| GGAGCTCCTCCGGCTACAGC+AGG | 0.454172 | 5.4:+76331407 | None:intergenic |
| GCGCCTCGCCCTGCTGTAGC+CGG | 0.463568 | 5.4:-76331416 | MS.gene020871:CDS |
| AAGGATGATGCCCCAAGGCC+TGG | 0.473726 | 5.4:-76331452 | MS.gene020871:CDS |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5.4:+76333436 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5.4:+76333480 | None:intergenic |
| GCAGGGCGAGGCGCTTGACC+AGG | 0.476630 | 5.4:+76331425 | None:intergenic |
| GAGTTAGATCTCGCACTGAT+AGG | 0.485329 | 5.4:-76332703 | MS.gene020871:CDS |
| CCTCCGGCTACAGCAGGGCG+AGG | 0.486107 | 5.4:+76331413 | None:intergenic |
| TAACTCTCACAACATGAGAA+TGG | 0.517819 | 5.4:+76332720 | None:intergenic |
| ACCAGGCTGACCAGGCCTTG+GGG | 0.531483 | 5.4:+76331442 | None:intergenic |
| TGCATCTTCACATACAGCTT+AGG | 0.540851 | 5.4:+76332764 | None:intergenic |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5.4:-76333449 | MS.gene020871:CDS |
| CCTCGCCCTGCTGTAGCCGG+AGG | 0.543172 | 5.4:-76331413 | MS.gene020871:CDS |
| CGCCTGATAAAACGCTGTGG+AGG | 0.544177 | 5.4:+76332668 | None:intergenic |
| TTAGATCTCGCACTGATAGG+AGG | 0.569205 | 5.4:-76332700 | MS.gene020871:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5.4:-76333503 | MS.gene020871:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5.4:-76333482 | MS.gene020871:CDS |
| GGTACGGACAGGAGCTCCTC+CGG | 0.581569 | 5.4:+76331397 | None:intergenic |
| GCCTGATAAAACGCTGTGGA+GGG | 0.608622 | 5.4:+76332669 | None:intergenic |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5.4:-76333488 | MS.gene020871:CDS |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5.4:-76333432 | MS.gene020871:intron |
| GAGCTCCTCCGGCTACAGCA+GGG | 0.629074 | 5.4:+76331408 | None:intergenic |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5.4:+76333459 | None:intergenic |
| AACAGGACAAGGCAATCAAG+AGG | 0.667211 | 5.4:-76333320 | MS.gene020871:intron |
| CTGCGCCTGATAAAACGCTG+TGG | 0.688307 | 5.4:+76332665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTATTTCTTTTTTAA+AGG | - | chr5.4:76333519-76333538 | MS.gene020871:intron | 10.0% |
| !! | AAAAAAACAGAAAAATCTTA+CGG | + | chr5.4:76331761-76331780 | None:intergenic | 15.0% |
| !! | CAGCAAAATATATAATTATA+AGG | + | chr5.4:76333474-76333493 | None:intergenic | 15.0% |
| !!! | TGATTCTGTTTTTTATTTTT+TGG | - | chr5.4:76332174-76332193 | MS.gene020871:intron | 15.0% |
| !!! | TTTTTATTAGATAGATTTCT+AGG | + | chr5.4:76332958-76332977 | None:intergenic | 15.0% |
| !! | ATAAAAAACAGAATCAGTTA+AGG | + | chr5.4:76332170-76332189 | None:intergenic | 20.0% |
| !! | ATAAATTTCAAATCCTTTGT+AGG | - | chr5.4:76332115-76332134 | MS.gene020871:intron | 20.0% |
| !! | TAAATTTCAAATCCTTTGTA+GGG | - | chr5.4:76332116-76332135 | MS.gene020871:intron | 20.0% |
| !!! | AAAGGATTTGAAATTTATGT+AGG | + | chr5.4:76332113-76332132 | None:intergenic | 20.0% |
| !!! | AAGGATTTGAAATTTATGTA+GGG | + | chr5.4:76332112-76332131 | None:intergenic | 20.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | - | chr5.4:76331855-76331874 | MS.gene020871:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | - | chr5.4:76331856-76331875 | MS.gene020871:intron | 20.0% |
| !!! | ATTTTGCTGTTTATTTTAGT+TGG | - | chr5.4:76333485-76333504 | MS.gene020871:CDS | 20.0% |
| !!! | GATTTAGATTTTTCATATAG+TGG | - | chr5.4:76332616-76332635 | MS.gene020871:intron | 20.0% |
| !!! | GGCTAAATTTTATTTAATAC+AGG | + | chr5.4:76333249-76333268 | None:intergenic | 20.0% |
| !!! | TCTGTTTTTTATTTTTTGGT+TGG | - | chr5.4:76332178-76332197 | MS.gene020871:intron | 20.0% |
| ! | AAAAACATGAAAACTGAAAG+AGG | + | chr5.4:76332371-76332390 | None:intergenic | 25.0% |
| ! | AAATGTATCACAAATTTACG+AGG | - | chr5.4:76333203-76333222 | MS.gene020871:intron | 25.0% |
| ! | AATAGTGTTGTATCTAATTC+CGG | + | chr5.4:76332762-76332781 | None:intergenic | 25.0% |
| ! | ATACTTTAGGTACTAAATTG+CGG | + | chr5.4:76332697-76332716 | None:intergenic | 25.0% |
| ! | ATTGCATATGAAATTGTGTA+TGG | - | chr5.4:76332415-76332434 | MS.gene020871:intron | 25.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | + | chr5.4:76331851-76331870 | None:intergenic | 25.0% |
| ! | GTTAATAAAACATGAACACA+TGG | - | chr5.4:76332483-76332502 | MS.gene020871:intron | 25.0% |
| ! | TCAATCTATAACAGAAAGTA+AGG | + | chr5.4:76332997-76333016 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | + | chr5.4:76331852-76331871 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTGTTACTAACT+AGG | - | chr5.4:76332381-76332400 | MS.gene020871:intron | 25.0% |
| !!! | TTTTGTTTTTGTTTGTGAAC+AGG | - | chr5.4:76331653-76331672 | MS.gene020871:intron | 25.0% |
| AATCCAGACTCATTGAAATA+CGG | + | chr5.4:76333419-76333438 | None:intergenic | 30.0% | |
| AATGACAAAGTGAAATACCT+TGG | + | chr5.4:76331578-76331597 | None:intergenic | 30.0% | |
| ACGGTTTATCAGATCTTATA+TGG | - | chr5.4:76333153-76333172 | MS.gene020871:intron | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | + | chr5.4:76331577-76331596 | None:intergenic | 30.0% | |
| ATTGAAATACGGAGAAAGTA+TGG | + | chr5.4:76333408-76333427 | None:intergenic | 30.0% | |
| CAGCAATTTGACAATACTTT+AGG | + | chr5.4:76332710-76332729 | None:intergenic | 30.0% | |
| CATTGCAAACCAAAATGAAA+AGG | - | chr5.4:76333272-76333291 | MS.gene020871:CDS | 30.0% | |
| GATGACATACTACATTGAAA+AGG | + | chr5.4:76332864-76332883 | None:intergenic | 30.0% | |
| GGACTTAATTAGATATTGCT+TGG | + | chr5.4:76333364-76333383 | None:intergenic | 30.0% | |
| TAACACAATGATGTCAAATG+TGG | + | chr5.4:76332794-76332813 | None:intergenic | 30.0% | |
| TATTTCAATGAGTCTGGATT+TGG | - | chr5.4:76333419-76333438 | MS.gene020871:intron | 30.0% | |
| TCTATAGCACTATATCATAC+CGG | - | chr5.4:76332740-76332759 | MS.gene020871:CDS | 30.0% | |
| TCTCTGATCTATTCATTTCT+CGG | - | chr5.4:76331430-76331449 | MS.gene020871:CDS | 30.0% | |
| TGAACGCACATTATTTGAAT+AGG | - | chr5.4:76332891-76332910 | MS.gene020871:intron | 30.0% | |
| TTCATTTCATAAGCTTGTCT+AGG | - | chr5.4:76331951-76331970 | MS.gene020871:intron | 30.0% | |
| TTTGTGAACCAAACAAAGAT+AGG | - | chr5.4:76333329-76333348 | MS.gene020871:intron | 30.0% | |
| ! | ACTTTTGACACTTGAAACTT+TGG | - | chr5.4:76332557-76332576 | MS.gene020871:intron | 30.0% |
| ! | AGATTTCTAGGAACAAGTTT+AGG | + | chr5.4:76332946-76332965 | None:intergenic | 30.0% |
| ! | CAAGTTTAGGATTTGATAGA+TGG | + | chr5.4:76332933-76332952 | None:intergenic | 30.0% |
| ! | GATTTGATAGATGGAGTATT+AGG | + | chr5.4:76332924-76332943 | None:intergenic | 30.0% |
| !! | TTAGTTTGCTTTACATAGTG+TGG | - | chr5.4:76333054-76333073 | MS.gene020871:intron | 30.0% |
| AATCACGATAAACCCTACAA+AGG | + | chr5.4:76332131-76332150 | None:intergenic | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | + | chr5.4:76331864-76331883 | None:intergenic | 35.0% | |
| ACATACTACATTGAAAAGGC+AGG | + | chr5.4:76332860-76332879 | None:intergenic | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | + | chr5.4:76331534-76331553 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | - | chr5.4:76331865-76331884 | MS.gene020871:intron | 35.0% | |
| ATAGGGGAAATTAATCGAAG+GGG | + | chr5.4:76333305-76333324 | None:intergenic | 35.0% | |
| CAATCAAGAGGTTTCTTGTT+AGG | - | chr5.4:76331682-76331701 | MS.gene020871:intron | 35.0% | |
| GATAGGGGAAATTAATCGAA+GGG | + | chr5.4:76333306-76333325 | None:intergenic | 35.0% | |
| GCATAGCAAAGACATAAGAA+TGG | + | chr5.4:76332519-76332538 | None:intergenic | 35.0% | |
| TAACTCTCACAACATGAGAA+TGG | + | chr5.4:76332273-76332292 | None:intergenic | 35.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | - | chr5.4:76331484-76331503 | MS.gene020871:intron | 35.0% | |
| TCACAAAGCCTATCTTTGTT+TGG | + | chr5.4:76333340-76333359 | None:intergenic | 35.0% | |
| TTCGTAAGCTCAATCTGAAT+GGG | - | chr5.4:76332086-76332105 | MS.gene020871:intron | 35.0% | |
| TTTCGTAAGCTCAATCTGAA+TGG | - | chr5.4:76332085-76332104 | MS.gene020871:intron | 35.0% | |
| TTTGCTTTACATAGTGTGGT+TGG | - | chr5.4:76333058-76333077 | MS.gene020871:intron | 35.0% | |
| ! | AAAAACACACAAGCTAGTCT+AGG | - | chr5.4:76331984-76332003 | MS.gene020871:intron | 35.0% |
| ! | AAAGTATGGATGGGTTTGAT+TGG | + | chr5.4:76333394-76333413 | None:intergenic | 35.0% |
| ! | AAATACGGAGAAAGTATGGA+TGG | + | chr5.4:76333404-76333423 | None:intergenic | 35.0% |
| ! | AATACGGAGAAAGTATGGAT+GGG | + | chr5.4:76333403-76333422 | None:intergenic | 35.0% |
| ! | GGAGAATAGCCTTTTCATTT+TGG | + | chr5.4:76333284-76333303 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGTTCACAAAG+AGG | + | chr5.4:76333328-76333347 | None:intergenic | 35.0% |
| ! | TTGTCAAATTGCTGTTATCG+CGG | - | chr5.4:76332716-76332735 | MS.gene020871:CDS | 35.0% |
| ! | TTTGGTTCACAAAGAGGATA+GGG | + | chr5.4:76333322-76333341 | None:intergenic | 35.0% |
| !! | TTTTGTTTGTGAACAGGACA+AGG | - | chr5.4:76331659-76331678 | MS.gene020871:intron | 35.0% |
| !!! | TCATTTTGGTTTGCAATGAG+AGG | + | chr5.4:76333270-76333289 | None:intergenic | 35.0% |
| ACAAAACCCCCAATATAGGA+GGG | + | chr5.4:76333124-76333143 | None:intergenic | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | - | chr5.4:76331487-76331506 | MS.gene020871:intron | 40.0% | |
| GGATAGGGGAAATTAATCGA+AGG | + | chr5.4:76333307-76333326 | None:intergenic | 40.0% | |
| GTTGCTTGAGTGTATATCAG+TGG | - | chr5.4:76333021-76333040 | MS.gene020871:intron | 40.0% | |
| TACAAAACCCCCAATATAGG+AGG | + | chr5.4:76333125-76333144 | None:intergenic | 40.0% | |
| TCCTACAAAACCCCCAATAT+AGG | + | chr5.4:76333128-76333147 | None:intergenic | 40.0% | |
| TCTCCGTATTTCAATGAGTC+TGG | - | chr5.4:76333413-76333432 | MS.gene020871:intron | 40.0% | |
| TGCATCTTCACATACAGCTT+AGG | + | chr5.4:76332229-76332248 | None:intergenic | 40.0% | |
| TTACATAGTGTGGTTGGAGT+GGG | - | chr5.4:76333064-76333083 | MS.gene020871:intron | 40.0% | |
| TTCAATGAGTCTGGATTTGG+TGG | - | chr5.4:76333422-76333441 | MS.gene020871:intron | 40.0% | |
| TTGGTTCACAAAGAGGATAG+GGG | + | chr5.4:76333321-76333340 | None:intergenic | 40.0% | |
| TTTACATAGTGTGGTTGGAG+TGG | - | chr5.4:76333063-76333082 | MS.gene020871:intron | 40.0% | |
| ! | GTTTGGTTCACAAAGAGGAT+AGG | + | chr5.4:76333323-76333342 | None:intergenic | 40.0% |
| ! | TATGGATGGGTTTGATTGGA+GGG | + | chr5.4:76333390-76333409 | None:intergenic | 40.0% |
| !! | TCCTATATTGGGGGTTTTGT+AGG | - | chr5.4:76333124-76333143 | MS.gene020871:intron | 40.0% |
| !! | TTTTAAAGGATGATGCCCCA+AGG | - | chr5.4:76333533-76333552 | MS.gene020871:intron | 40.0% |
| AACAGGACAAGGCAATCAAG+AGG | - | chr5.4:76331670-76331689 | MS.gene020871:intron | 45.0% | |
| AATGGAGGCCGTAACAAACA+TGG | - | chr5.4:76331502-76331521 | MS.gene020871:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | - | chr5.4:76331719-76331738 | MS.gene020871:intron | 45.0% | |
| CAAAACCCCCAATATAGGAG+GGG | + | chr5.4:76333123-76333142 | None:intergenic | 45.0% | |
| TAAACGACACAGCAGTGCAA+AGG | + | chr5.4:76332596-76332615 | None:intergenic | 45.0% | |
| TACATAGTGTGGTTGGAGTG+GGG | - | chr5.4:76333065-76333084 | MS.gene020871:intron | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | - | chr5.4:76331541-76331560 | MS.gene020871:intron | 45.0% | |
| ! | ATGGATGGGTTTGATTGGAG+GGG | + | chr5.4:76333389-76333408 | None:intergenic | 45.0% |
| ! | GAGTTAGATCTCGCACTGAT+AGG | - | chr5.4:76332287-76332306 | MS.gene020871:intron | 45.0% |
| ! | GTATGGATGGGTTTGATTGG+AGG | + | chr5.4:76333391-76333410 | None:intergenic | 45.0% |
| ! | TTAGATCTCGCACTGATAGG+AGG | - | chr5.4:76332290-76332309 | MS.gene020871:intron | 45.0% |
| ACATAGTGTGGTTGGAGTGG+GGG | - | chr5.4:76333066-76333085 | MS.gene020871:intron | 50.0% | |
| AGGGGAGCAGGAATTGAGTA+GGG | + | chr5.4:76333105-76333124 | None:intergenic | 50.0% | |
| ATGGGTTTGATTGGAGGGGA+TGG | + | chr5.4:76333385-76333404 | None:intergenic | 50.0% | |
| CTGTGGTAAATGCTGTCCCA+AGG | - | chr5.4:76331558-76331577 | MS.gene020871:intron | 50.0% | |
| GAGCAGGAATTGAGTAGGGA+AGG | + | chr5.4:76333101-76333120 | None:intergenic | 50.0% | |
| GCCTGATAAAACGCTGTGGA+GGG | + | chr5.4:76332324-76332343 | None:intergenic | 50.0% | |
| GGGACAGCATTTACCACAGT+TGG | + | chr5.4:76331557-76331576 | None:intergenic | 50.0% | |
| TCCTGCTCCCCTCCTATATT+GGG | - | chr5.4:76333113-76333132 | MS.gene020871:intron | 50.0% | |
| TTCCTGCTCCCCTCCTATAT+TGG | - | chr5.4:76333112-76333131 | MS.gene020871:intron | 50.0% | |
| ! | ACAGCGTTTTATCAGGCGCA+GGG | - | chr5.4:76332327-76332346 | MS.gene020871:intron | 50.0% |
| ! | ACCCTCCACAGCGTTTTATC+AGG | - | chr5.4:76332320-76332339 | MS.gene020871:intron | 50.0% |
| ! | GGCCACGACCATGTTTGTTA+CGG | + | chr5.4:76331513-76331532 | None:intergenic | 50.0% |
| !! | GGGGTTTTGTAGGAGAGCAA+CGG | - | chr5.4:76333134-76333153 | MS.gene020871:intron | 50.0% |
| CATAGTGTGGTTGGAGTGGG+GGG | - | chr5.4:76333067-76333086 | MS.gene020871:intron | 55.0% | |
| CCTGCTCCCCTCCTATATTG+GGG | - | chr5.4:76333114-76333133 | MS.gene020871:intron | 55.0% | |
| CGCCTGATAAAACGCTGTGG+AGG | + | chr5.4:76332325-76332344 | None:intergenic | 55.0% | |
| CTGCGCCTGATAAAACGCTG+TGG | + | chr5.4:76332328-76332347 | None:intergenic | 55.0% | |
| CTGCTCCCCTCCTATATTGG+GGG | - | chr5.4:76333115-76333134 | MS.gene020871:intron | 55.0% | |
| GAGGGGAGCAGGAATTGAGT+AGG | + | chr5.4:76333106-76333125 | None:intergenic | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | - | chr5.4:76331508-76331527 | MS.gene020871:intron | 55.0% | |
| ! | CACAGCGTTTTATCAGGCGC+AGG | - | chr5.4:76332326-76332345 | MS.gene020871:intron | 55.0% |
| AAGGATGATGCCCCAAGGCC+TGG | - | chr5.4:76333538-76333557 | MS.gene020871:intron | 60.0% | |
| CCCCAATATAGGAGGGGAGC+AGG | + | chr5.4:76333117-76333136 | None:intergenic | 60.0% | |
| ACCAGGCTGACCAGGCCTTG+GGG | + | chr5.4:76333551-76333570 | None:intergenic | 65.0% | |
| GACCAGGCTGACCAGGCCTT+GGG | + | chr5.4:76333552-76333571 | None:intergenic | 65.0% | |
| GAGCTCCTCCGGCTACAGCA+GGG | + | chr5.4:76333585-76333604 | None:intergenic | 65.0% | |
| GGTACGGACAGGAGCTCCTC+CGG | + | chr5.4:76333596-76333615 | None:intergenic | 65.0% | |
| TGACCAGGCTGACCAGGCCT+TGG | + | chr5.4:76333553-76333572 | None:intergenic | 65.0% | |
| GGAGCTCCTCCGGCTACAGC+AGG | + | chr5.4:76333586-76333605 | None:intergenic | 70.0% | |
| GGCGCTTGACCAGGCTGACC+AGG | + | chr5.4:76333559-76333578 | None:intergenic | 70.0% | |
| CCTCCGGCTACAGCAGGGCG+AGG | + | chr5.4:76333580-76333599 | None:intergenic | 75.0% | |
| CCTCGCCCTGCTGTAGCCGG+AGG | - | chr5.4:76333577-76333596 | MS.gene020871:intron | 75.0% | |
| GCCCCAAGGCCTGGTCAGCC+TGG | - | chr5.4:76333547-76333566 | MS.gene020871:intron | 75.0% | |
| GCGCCTCGCCCTGCTGTAGC+CGG | - | chr5.4:76333574-76333593 | MS.gene020871:intron | 75.0% | |
| ! | GCAGGGCGAGGCGCTTGACC+AGG | + | chr5.4:76333568-76333587 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 76331394 | 76333618 | 76331394 | ID=MS.gene020871 |
| chr5.4 | mRNA | 76331394 | 76333618 | 76331394 | ID=MS.gene020871.t1;Parent=MS.gene020871 |
| chr5.4 | exon | 76333616 | 76333618 | 76333616 | ID=MS.gene020871.t1.exon1;Parent=MS.gene020871.t1 |
| chr5.4 | CDS | 76333616 | 76333618 | 76333616 | ID=cds.MS.gene020871.t1;Parent=MS.gene020871.t1 |
| chr5.4 | exon | 76333433 | 76333525 | 76333433 | ID=MS.gene020871.t1.exon2;Parent=MS.gene020871.t1 |
| chr5.4 | CDS | 76333433 | 76333525 | 76333433 | ID=cds.MS.gene020871.t1;Parent=MS.gene020871.t1 |
| chr5.4 | exon | 76333253 | 76333337 | 76333253 | ID=MS.gene020871.t1.exon3;Parent=MS.gene020871.t1 |
| chr5.4 | CDS | 76333253 | 76333337 | 76333253 | ID=cds.MS.gene020871.t1;Parent=MS.gene020871.t1 |
| chr5.4 | exon | 76332664 | 76332797 | 76332664 | ID=MS.gene020871.t1.exon4;Parent=MS.gene020871.t1 |
| chr5.4 | CDS | 76332664 | 76332797 | 76332664 | ID=cds.MS.gene020871.t1;Parent=MS.gene020871.t1 |
| chr5.4 | exon | 76331394 | 76331471 | 76331394 | ID=MS.gene020871.t1.exon5;Parent=MS.gene020871.t1 |
| chr5.4 | CDS | 76331394 | 76331471 | 76331394 | ID=cds.MS.gene020871.t1;Parent=MS.gene020871.t1 |
| Gene Sequence |
| Protein sequence |
