Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38035.t1 | XP_003617941.2 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.10E-67 | 265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38035.t1 | Q9LYK9 | 83.5 | 127 | 19 | 1 | 1 | 127 | 1 | 125 | 1.5e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38035.t1 | I3S2G2 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 7.7e-68 | 265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene38035 | 0.830368 | 3.06E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene38035 | 0.876863 | 9.95E-69 | -1.69E-46 |
| MS.gene050134 | MS.gene38035 | 0.889728 | 1.87E-73 | -1.69E-46 |
| MS.gene050791 | MS.gene38035 | 0.842161 | 3.06E-58 | -1.69E-46 |
| MS.gene051925 | MS.gene38035 | 0.855293 | 6.95E-62 | -1.69E-46 |
| MS.gene051927 | MS.gene38035 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene051984 | MS.gene38035 | 0.81664 | 4.98E-52 | -1.69E-46 |
| MS.gene052664 | MS.gene38035 | 0.858747 | 6.66E-63 | -1.69E-46 |
| MS.gene052666 | MS.gene38035 | 0.855535 | 5.91E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene38035 | 0.860195 | 2.45E-63 | -1.69E-46 |
| MS.gene054624 | MS.gene38035 | 0.822456 | 2.35E-53 | -1.69E-46 |
| MS.gene057272 | MS.gene38035 | 0.854843 | 9.40E-62 | -1.69E-46 |
| MS.gene057641 | MS.gene38035 | 0.830185 | 3.39E-55 | -1.69E-46 |
| MS.gene057643 | MS.gene38035 | 0.867315 | 1.50E-65 | -1.69E-46 |
| MS.gene059340 | MS.gene38035 | 0.862059 | 6.62E-64 | -1.69E-46 |
| MS.gene060483 | MS.gene38035 | 0.858446 | 8.19E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38222 | MS.gene38035 | PPI |
| MS.gene38035 | MS.gene83159 | PPI |
| MS.gene38035 | MS.gene016407 | PPI |
| MS.gene38035 | MS.gene059340 | PPI |
| MS.gene38035 | MS.gene81244 | PPI |
| MS.gene38035 | MS.gene049387 | PPI |
| MS.gene38035 | MS.gene016408 | PPI |
| MS.gene38035 | MS.gene51868 | PPI |
| MS.gene08205 | MS.gene38035 | PPI |
| MS.gene59772 | MS.gene38035 | PPI |
| MS.gene38035 | MS.gene013415 | PPI |
| MS.gene38035 | MS.gene067809 | PPI |
| MS.gene38035 | MS.gene020871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38035.t1 | MTR_5g097200 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.03e-92 | 263 |
| MS.gene38035.t1 | MTR_3g094220 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 9.15e-82 | 236 |
| MS.gene38035.t1 | MTR_5g097200 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 5.65e-74 | 216 |
| MS.gene38035.t1 | MTR_3g094220 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 1.26e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38035.t1 | AT2G40590 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 1.51e-68 | 202 |
| MS.gene38035.t1 | AT3G56340 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.17e-68 | 202 |
| MS.gene38035.t1 | AT2G40510 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.19e-68 | 202 |
Find 35 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCAGGCTGACCAGGCCTT+GGG | 0.278097 | 5.1:+77489162 | None:intergenic |
| TGACCAGGCTGACCAGGCCT+TGG | 0.293734 | 5.1:+77489161 | None:intergenic |
| CTATCAAGAGGTTTCTTGTT+AGG | 0.298238 | 5.1:-77491018 | MS.gene38035:CDS |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5.1:-77490981 | MS.gene38035:CDS |
| GGCGCTTGACCAGGCTGACC+AGG | 0.427155 | 5.1:+77489155 | None:intergenic |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5.1:-77491216 | MS.gene38035:CDS |
| GCCCCAAGGCCTGGTCAGCC+TGG | 0.433949 | 5.1:-77489164 | MS.gene38035:CDS |
| GGAGCTCCTCCGGCTACAGC+AGG | 0.454172 | 5.1:+77489128 | None:intergenic |
| GCGCCTCGCCCTGCTGTAGC+CGG | 0.463568 | 5.1:-77489137 | MS.gene38035:CDS |
| AAGGATGATGCCCCAAGGCC+TGG | 0.473726 | 5.1:-77489173 | MS.gene38035:CDS |
| ACCCTCCACAGCGTTTCATC+AGG | 0.473802 | 5.1:-77490385 | MS.gene38035:CDS |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5.1:+77491146 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5.1:+77491190 | None:intergenic |
| GCAGGGCGAGGCGCTTGACC+AGG | 0.476630 | 5.1:+77489146 | None:intergenic |
| GAGTTAGATCTCGCACTGAT+AGG | 0.485329 | 5.1:-77490418 | MS.gene38035:CDS |
| CCTCCGGCTACAGCAGGGCG+AGG | 0.486107 | 5.1:+77489134 | None:intergenic |
| CGCCTGATGAAACGCTGTGG+AGG | 0.504436 | 5.1:+77490383 | None:intergenic |
| TAACTCTCACAACATGAGAA+TGG | 0.517819 | 5.1:+77490435 | None:intergenic |
| ACCAGGCTGACCAGGCCTTG+GGG | 0.531483 | 5.1:+77489163 | None:intergenic |
| CACAGCGTTTCATCAGGCGC+AGG | 0.535977 | 5.1:-77490379 | MS.gene38035:CDS |
| TGCATCTTCACATACAGCTT+AGG | 0.540851 | 5.1:+77490479 | None:intergenic |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5.1:-77491159 | MS.gene38035:CDS |
| CCTCGCCCTGCTGTAGCCGG+AGG | 0.543172 | 5.1:-77489134 | MS.gene38035:CDS |
| TTAGATCTCGCACTGATAGG+AGG | 0.569205 | 5.1:-77490415 | MS.gene38035:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5.1:-77491213 | MS.gene38035:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5.1:-77491192 | MS.gene38035:CDS |
| GGTACGGACAGGAGCTCCTC+CGG | 0.581569 | 5.1:+77489118 | None:intergenic |
| GCCTGATGAAACGCTGTGGA+GGG | 0.592960 | 5.1:+77490384 | None:intergenic |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5.1:-77491198 | MS.gene38035:CDS |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5.1:-77491142 | MS.gene38035:intron |
| GAGCTCCTCCGGCTACAGCA+GGG | 0.629074 | 5.1:+77489129 | None:intergenic |
| ACAGCGTTTCATCAGGCGCA+GGG | 0.646586 | 5.1:-77490378 | MS.gene38035:intron |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5.1:+77491169 | None:intergenic |
| AATAGGACAAGGCTATCAAG+AGG | 0.668775 | 5.1:-77491030 | MS.gene38035:intron |
| CTGCGCCTGATGAAACGCTG+TGG | 0.679468 | 5.1:+77490380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAGAAAAATCTTA+CGG | + | chr5.1:77489482-77489501 | None:intergenic | 10.0% |
| !!! | TTCTGTTTTTTTTTTTTTTT+TGG | - | chr5.1:77489890-77489909 | MS.gene38035:intron | 10.0% |
| !!! | TTTGTTTATTTCTTTTTTAA+AGG | - | chr5.1:77491229-77491248 | MS.gene38035:intron | 10.0% |
| !! | CAGCAAAATATATAATTATA+AGG | + | chr5.1:77491184-77491203 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTTTTGGT+TGG | - | chr5.1:77489894-77489913 | MS.gene38035:intron | 15.0% |
| !!! | TTTTTATTAGATAGATTTCT+AGG | + | chr5.1:77490668-77490687 | None:intergenic | 15.0% |
| !! | AAAAAAAACAGAATCAGTTA+AGG | + | chr5.1:77489883-77489902 | None:intergenic | 20.0% |
| !! | ATAAATTTCAAATCCTTTGT+AGG | - | chr5.1:77489828-77489847 | MS.gene38035:intron | 20.0% |
| !! | TAAATTTCAAATCCTTTGTA+GGG | - | chr5.1:77489829-77489848 | MS.gene38035:intron | 20.0% |
| !!! | AAAGGATTTGAAATTTATGT+AGG | + | chr5.1:77489826-77489845 | None:intergenic | 20.0% |
| !!! | AAGGATTTGAAATTTATGTA+GGG | + | chr5.1:77489825-77489844 | None:intergenic | 20.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | - | chr5.1:77489577-77489596 | MS.gene38035:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | - | chr5.1:77489578-77489597 | MS.gene38035:intron | 20.0% |
| !!! | ATTTTGCTGTTTATTTTAGT+TGG | - | chr5.1:77491195-77491214 | MS.gene38035:CDS | 20.0% |
| !!! | GGCTAAATTTTATTTAATAC+AGG | + | chr5.1:77490959-77490978 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTGTTTGTGAAT+AGG | - | chr5.1:77489374-77489393 | MS.gene38035:intron | 20.0% |
| ! | AAAAACATGAAAACTGAAAG+AGG | + | chr5.1:77490087-77490106 | None:intergenic | 25.0% |
| ! | AAATGTATCACAAATTTACG+AGG | - | chr5.1:77490913-77490932 | MS.gene38035:intron | 25.0% |
| ! | AATAGTGTTGTATCTAATTC+CGG | + | chr5.1:77490472-77490491 | None:intergenic | 25.0% |
| ! | ATACTTTAGGTACTAAATTG+CGG | + | chr5.1:77490407-77490426 | None:intergenic | 25.0% |
| ! | ATTGCATATGAAATTGTGTA+TGG | - | chr5.1:77490131-77490150 | MS.gene38035:intron | 25.0% |
| ! | CTCTAAGTTAATAAAACACA+TGG | - | chr5.1:77490193-77490212 | MS.gene38035:intron | 25.0% |
| ! | GATTTAGATTTGTCATATAG+TGG | - | chr5.1:77490326-77490345 | MS.gene38035:intron | 25.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | + | chr5.1:77489573-77489592 | None:intergenic | 25.0% |
| ! | TCAATCTATAACAGAAAGTA+AGG | + | chr5.1:77490707-77490726 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | + | chr5.1:77489574-77489593 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTGTTACTAACT+AGG | - | chr5.1:77490097-77490116 | MS.gene38035:intron | 25.0% |
| AATCCAGACTCATTGAAATA+CGG | + | chr5.1:77491129-77491148 | None:intergenic | 30.0% | |
| AATGACAAAGTGAAATACCT+TGG | + | chr5.1:77489299-77489318 | None:intergenic | 30.0% | |
| ACGGTTTATCAGATCTTATA+TGG | - | chr5.1:77490863-77490882 | MS.gene38035:intron | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | + | chr5.1:77489298-77489317 | None:intergenic | 30.0% | |
| ATTGAAATACGGAGAAAGTA+TGG | + | chr5.1:77491118-77491137 | None:intergenic | 30.0% | |
| CAGCAATTTGACAATACTTT+AGG | + | chr5.1:77490420-77490439 | None:intergenic | 30.0% | |
| CATTGCAAACCAAAATGAAA+AGG | - | chr5.1:77490982-77491001 | MS.gene38035:CDS | 30.0% | |
| GATGACATACTACATTGAAA+AGG | + | chr5.1:77490574-77490593 | None:intergenic | 30.0% | |
| GGACTTAATTAGATATTGCT+TGG | + | chr5.1:77491074-77491093 | None:intergenic | 30.0% | |
| TAACACAATGATGTCAAATG+TGG | + | chr5.1:77490504-77490523 | None:intergenic | 30.0% | |
| TATTTCAATGAGTCTGGATT+TGG | - | chr5.1:77491129-77491148 | MS.gene38035:intron | 30.0% | |
| TCTATAGCACTATATCATAC+CGG | - | chr5.1:77490450-77490469 | MS.gene38035:CDS | 30.0% | |
| TCTCTGATCTATTCATTTCT+CGG | - | chr5.1:77489151-77489170 | MS.gene38035:CDS | 30.0% | |
| TGAACGCACATTATTTGAAT+AGG | - | chr5.1:77490601-77490620 | MS.gene38035:intron | 30.0% | |
| TTCATAAGCTCAATCTGAAT+GGG | - | chr5.1:77489799-77489818 | MS.gene38035:intron | 30.0% | |
| TTCATTTCATAAGCTTGTCT+AGG | - | chr5.1:77489664-77489683 | MS.gene38035:intron | 30.0% | |
| TTTCATAAGCTCAATCTGAA+TGG | - | chr5.1:77489798-77489817 | MS.gene38035:intron | 30.0% | |
| TTTGTGAACCAAACAAAGAT+AGG | - | chr5.1:77491039-77491058 | MS.gene38035:intron | 30.0% | |
| ! | ACTTTTGACACTTGAAACTT+TGG | - | chr5.1:77490267-77490286 | MS.gene38035:intron | 30.0% |
| ! | AGATTTCTAGGAACAAGTTT+AGG | + | chr5.1:77490656-77490675 | None:intergenic | 30.0% |
| ! | CAAGTTTAGGATTTGATAGA+TGG | + | chr5.1:77490643-77490662 | None:intergenic | 30.0% |
| ! | GATTTGATAGATGGAGTATT+AGG | + | chr5.1:77490634-77490653 | None:intergenic | 30.0% |
| !! | TTAGTTTGCTTTACATAGTG+TGG | - | chr5.1:77490764-77490783 | MS.gene38035:intron | 30.0% |
| !! | TTTTGTTTGTGAATAGGACA+AGG | - | chr5.1:77489380-77489399 | MS.gene38035:intron | 30.0% |
| AATCACGATAAACCCTACAA+AGG | + | chr5.1:77489844-77489863 | None:intergenic | 35.0% | |
| ACAAAACACCCAATATAGGA+GGG | + | chr5.1:77490834-77490853 | None:intergenic | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | + | chr5.1:77489586-77489605 | None:intergenic | 35.0% | |
| ACATACTACATTGAAAAGGC+AGG | + | chr5.1:77490570-77490589 | None:intergenic | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | + | chr5.1:77489255-77489274 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | - | chr5.1:77489587-77489606 | MS.gene38035:intron | 35.0% | |
| CGCACATTATTTGAATAGGA+TGG | - | chr5.1:77490605-77490624 | MS.gene38035:intron | 35.0% | |
| CTATCAAGAGGTTTCTTGTT+AGG | - | chr5.1:77489403-77489422 | MS.gene38035:intron | 35.0% | |
| GCATAGCAAAGACATAAGAA+TGG | + | chr5.1:77490229-77490248 | None:intergenic | 35.0% | |
| TAACTCTCACAACATGAGAA+TGG | + | chr5.1:77489989-77490008 | None:intergenic | 35.0% | |
| TACAAAACACCCAATATAGG+AGG | + | chr5.1:77490835-77490854 | None:intergenic | 35.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | - | chr5.1:77489205-77489224 | MS.gene38035:intron | 35.0% | |
| TCACAAAGCCTATCTTTGTT+TGG | + | chr5.1:77491050-77491069 | None:intergenic | 35.0% | |
| TCCTACAAAACACCCAATAT+AGG | + | chr5.1:77490838-77490857 | None:intergenic | 35.0% | |
| TTTGCTTTACATAGTGTGGT+TGG | - | chr5.1:77490768-77490787 | MS.gene38035:intron | 35.0% | |
| ! | AAAAACACACAAGCTAGTCT+AGG | - | chr5.1:77489697-77489716 | MS.gene38035:intron | 35.0% |
| ! | AAAGTATGGATGGGTTTGAT+TGG | + | chr5.1:77491104-77491123 | None:intergenic | 35.0% |
| ! | AAATACGGAGAAAGTATGGA+TGG | + | chr5.1:77491114-77491133 | None:intergenic | 35.0% |
| ! | AATACGGAGAAAGTATGGAT+GGG | + | chr5.1:77491113-77491132 | None:intergenic | 35.0% |
| ! | GGAGAATAGCCTTTTCATTT+TGG | + | chr5.1:77490994-77491013 | None:intergenic | 35.0% |
| ! | TCCTATATTGGGTGTTTTGT+AGG | - | chr5.1:77490834-77490853 | MS.gene38035:intron | 35.0% |
| ! | TCTTTGTTTGGTTCACAAAG+AGG | + | chr5.1:77491038-77491057 | None:intergenic | 35.0% |
| ! | TTGTCAAATTGCTGTTATCG+CGG | - | chr5.1:77490426-77490445 | MS.gene38035:CDS | 35.0% |
| ! | TTTGGTTCACAAAGAGGATA+GGG | + | chr5.1:77491032-77491051 | None:intergenic | 35.0% |
| !!! | TCATTTTGGTTTGCAATGAG+AGG | + | chr5.1:77490980-77490999 | None:intergenic | 35.0% |
| AATAGGACAAGGCTATCAAG+AGG | - | chr5.1:77489391-77489410 | MS.gene38035:intron | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | - | chr5.1:77489208-77489227 | MS.gene38035:intron | 40.0% | |
| ATAGGGGAAATTAATCGACG+GGG | + | chr5.1:77491015-77491034 | None:intergenic | 40.0% | |
| CAAAACACCCAATATAGGAG+GGG | + | chr5.1:77490833-77490852 | None:intergenic | 40.0% | |
| GATAGGGGAAATTAATCGAC+GGG | + | chr5.1:77491016-77491035 | None:intergenic | 40.0% | |
| GGATAGGGGAAATTAATCGA+CGG | + | chr5.1:77491017-77491036 | None:intergenic | 40.0% | |
| GTTGCTTGAGTGTATATCAG+TGG | - | chr5.1:77490731-77490750 | MS.gene38035:intron | 40.0% | |
| TCTCCGTATTTCAATGAGTC+TGG | - | chr5.1:77491123-77491142 | MS.gene38035:intron | 40.0% | |
| TGCATCTTCACATACAGCTT+AGG | + | chr5.1:77489945-77489964 | None:intergenic | 40.0% | |
| TTACATAGTGTGGTTGGAGT+GGG | - | chr5.1:77490774-77490793 | MS.gene38035:intron | 40.0% | |
| TTCAATGAGTCTGGATTTGG+TGG | - | chr5.1:77491132-77491151 | MS.gene38035:intron | 40.0% | |
| TTGGTTCACAAAGAGGATAG+GGG | + | chr5.1:77491031-77491050 | None:intergenic | 40.0% | |
| TTTACATAGTGTGGTTGGAG+TGG | - | chr5.1:77490773-77490792 | MS.gene38035:intron | 40.0% | |
| ! | GTTTGGTTCACAAAGAGGAT+AGG | + | chr5.1:77491033-77491052 | None:intergenic | 40.0% |
| ! | TATGGATGGGTTTGATTGGA+GGG | + | chr5.1:77491100-77491119 | None:intergenic | 40.0% |
| !! | TTTTAAAGGATGATGCCCCA+AGG | - | chr5.1:77491243-77491262 | MS.gene38035:intron | 40.0% |
| AATGGAGGCCGTAACAAACA+TGG | - | chr5.1:77489223-77489242 | MS.gene38035:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | - | chr5.1:77489440-77489459 | MS.gene38035:intron | 45.0% | |
| TAAACGACACAGCAGTGCAA+AGG | + | chr5.1:77490306-77490325 | None:intergenic | 45.0% | |
| TACATAGTGTGGTTGGAGTG+GGG | - | chr5.1:77490775-77490794 | MS.gene38035:intron | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | - | chr5.1:77489262-77489281 | MS.gene38035:intron | 45.0% | |
| ! | ATGGATGGGTTTGATTGGAG+GGG | + | chr5.1:77491099-77491118 | None:intergenic | 45.0% |
| ! | GAGTTAGATCTCGCACTGAT+AGG | - | chr5.1:77490003-77490022 | MS.gene38035:intron | 45.0% |
| ! | GGTGTTTTGTAGGAGAGCAA+CGG | - | chr5.1:77490844-77490863 | MS.gene38035:intron | 45.0% |
| ! | GTATGGATGGGTTTGATTGG+AGG | + | chr5.1:77491101-77491120 | None:intergenic | 45.0% |
| ! | TTAGATCTCGCACTGATAGG+AGG | - | chr5.1:77490006-77490025 | MS.gene38035:intron | 45.0% |
| ACATAGTGTGGTTGGAGTGG+GGG | - | chr5.1:77490776-77490795 | MS.gene38035:intron | 50.0% | |
| AGGGGAGCAGGAATTGAGTA+GGG | + | chr5.1:77490815-77490834 | None:intergenic | 50.0% | |
| ATGGGTTTGATTGGAGGGGA+TGG | + | chr5.1:77491095-77491114 | None:intergenic | 50.0% | |
| CTGTGGTAAATGCTGTCCCA+AGG | - | chr5.1:77489279-77489298 | MS.gene38035:intron | 50.0% | |
| GAGCAGGAATTGAGTAGGGA+AGG | + | chr5.1:77490811-77490830 | None:intergenic | 50.0% | |
| GGGACAGCATTTACCACAGT+TGG | + | chr5.1:77489278-77489297 | None:intergenic | 50.0% | |
| TCCTGCTCCCCTCCTATATT+GGG | - | chr5.1:77490823-77490842 | MS.gene38035:intron | 50.0% | |
| TTCCTGCTCCCCTCCTATAT+TGG | - | chr5.1:77490822-77490841 | MS.gene38035:intron | 50.0% | |
| ! | GGCCACGACCATGTTTGTTA+CGG | + | chr5.1:77489234-77489253 | None:intergenic | 50.0% |
| ACAGCGTTTCATCAGGCGCA+GGG | - | chr5.1:77490043-77490062 | MS.gene38035:intron | 55.0% | |
| ACCCAATATAGGAGGGGAGC+AGG | + | chr5.1:77490827-77490846 | None:intergenic | 55.0% | |
| ACCCTCCACAGCGTTTCATC+AGG | - | chr5.1:77490036-77490055 | MS.gene38035:intron | 55.0% | |
| CATAGTGTGGTTGGAGTGGG+GGG | - | chr5.1:77490777-77490796 | MS.gene38035:intron | 55.0% | |
| GAGGGGAGCAGGAATTGAGT+AGG | + | chr5.1:77490816-77490835 | None:intergenic | 55.0% | |
| GCCTGATGAAACGCTGTGGA+GGG | + | chr5.1:77490040-77490059 | None:intergenic | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | - | chr5.1:77489229-77489248 | MS.gene38035:intron | 55.0% | |
| AAGGATGATGCCCCAAGGCC+TGG | - | chr5.1:77491248-77491267 | MS.gene38035:intron | 60.0% | |
| CACAGCGTTTCATCAGGCGC+AGG | - | chr5.1:77490042-77490061 | MS.gene38035:intron | 60.0% | |
| CGCCTGATGAAACGCTGTGG+AGG | + | chr5.1:77490041-77490060 | None:intergenic | 60.0% | |
| CTGCGCCTGATGAAACGCTG+TGG | + | chr5.1:77490044-77490063 | None:intergenic | 60.0% | |
| ACCAGGCTGACCAGGCCTTG+GGG | + | chr5.1:77491261-77491280 | None:intergenic | 65.0% | |
| GACCAGGCTGACCAGGCCTT+GGG | + | chr5.1:77491262-77491281 | None:intergenic | 65.0% | |
| GAGCTCCTCCGGCTACAGCA+GGG | + | chr5.1:77491295-77491314 | None:intergenic | 65.0% | |
| GGTACGGACAGGAGCTCCTC+CGG | + | chr5.1:77491306-77491325 | None:intergenic | 65.0% | |
| TGACCAGGCTGACCAGGCCT+TGG | + | chr5.1:77491263-77491282 | None:intergenic | 65.0% | |
| GGAGCTCCTCCGGCTACAGC+AGG | + | chr5.1:77491296-77491315 | None:intergenic | 70.0% | |
| GGCGCTTGACCAGGCTGACC+AGG | + | chr5.1:77491269-77491288 | None:intergenic | 70.0% | |
| CCTCCGGCTACAGCAGGGCG+AGG | + | chr5.1:77491290-77491309 | None:intergenic | 75.0% | |
| CCTCGCCCTGCTGTAGCCGG+AGG | - | chr5.1:77491287-77491306 | MS.gene38035:intron | 75.0% | |
| GCCCCAAGGCCTGGTCAGCC+TGG | - | chr5.1:77491257-77491276 | MS.gene38035:intron | 75.0% | |
| GCGCCTCGCCCTGCTGTAGC+CGG | - | chr5.1:77491284-77491303 | MS.gene38035:intron | 75.0% | |
| ! | GCAGGGCGAGGCGCTTGACC+AGG | + | chr5.1:77491278-77491297 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77489115 | 77491328 | 77489115 | ID=MS.gene38035 |
| chr5.1 | mRNA | 77489115 | 77491328 | 77489115 | ID=MS.gene38035.t1;Parent=MS.gene38035 |
| chr5.1 | exon | 77491326 | 77491328 | 77491326 | ID=MS.gene38035.t1.exon1;Parent=MS.gene38035.t1 |
| chr5.1 | CDS | 77491326 | 77491328 | 77491326 | ID=cds.MS.gene38035.t1;Parent=MS.gene38035.t1 |
| chr5.1 | exon | 77491143 | 77491235 | 77491143 | ID=MS.gene38035.t1.exon2;Parent=MS.gene38035.t1 |
| chr5.1 | CDS | 77491143 | 77491235 | 77491143 | ID=cds.MS.gene38035.t1;Parent=MS.gene38035.t1 |
| chr5.1 | exon | 77490963 | 77491047 | 77490963 | ID=MS.gene38035.t1.exon3;Parent=MS.gene38035.t1 |
| chr5.1 | CDS | 77490963 | 77491047 | 77490963 | ID=cds.MS.gene38035.t1;Parent=MS.gene38035.t1 |
| chr5.1 | exon | 77490379 | 77490512 | 77490379 | ID=MS.gene38035.t1.exon4;Parent=MS.gene38035.t1 |
| chr5.1 | CDS | 77490379 | 77490512 | 77490379 | ID=cds.MS.gene38035.t1;Parent=MS.gene38035.t1 |
| chr5.1 | exon | 77489115 | 77489192 | 77489115 | ID=MS.gene38035.t1.exon5;Parent=MS.gene38035.t1 |
| chr5.1 | CDS | 77489115 | 77489192 | 77489115 | ID=cds.MS.gene38035.t1;Parent=MS.gene38035.t1 |
| Gene Sequence |
| Protein sequence |
