AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016408


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016408.t1 MTR_8g043450 92.195 205 14 1 1 203 1 205 1.33e-136 380
MS.gene016408.t1 MTR_8g043430 42.775 173 92 4 1 170 1 169 8.48e-37 126
MS.gene016408.t1 MTR_1g035200 52.273 132 60 2 1 132 91 219 4.76e-35 124
MS.gene016408.t1 MTR_8g043410 42.748 131 74 1 1 130 1 131 2.33e-31 111
MS.gene016408.t1 MTR_5g006380 48.148 81 41 1 17 96 18 98 1.50e-18 78.2
MS.gene016408.t1 MTR_7g086210 34.579 107 67 2 12 116 252 357 4.74e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016408.t1 AT5G27990 39.791 191 93 6 15 204 15 184 6.56e-28 104
MS.gene016408.t1 AT5G27990 39.791 191 93 6 15 204 15 184 6.56e-28 104
MS.gene016408.t1 AT3G22510 39.806 103 57 3 10 108 23 124 1.37e-16 73.2

Find 53 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTTAGATTCGGATTT+TGG 0.118567 8.2:-58029215 None:intergenic
CCCATTAACTGCCTTGTTCA+TGG 0.257049 8.2:-58029240 None:intergenic
GGTGGTCCTTGTAGCTTGTT+AGG 0.297509 8.2:-58025963 None:intergenic
CGTAATCCAGCTGCTTATTC+TGG 0.316707 8.2:+58027437 MS.gene016408:CDS
TCCATGAACAAGGCAGTTAA+TGG 0.322486 8.2:+58029239 MS.gene016408:CDS
CAAGCATTCACCGAAGGAAT+TGG 0.332888 8.2:+58025990 MS.gene016408:CDS
ATGTACGGAGAATGTTTAGA+AGG 0.404882 8.2:+58027377 MS.gene016408:CDS
CGGCGAGTTGGTGAGCTTTG+AGG 0.405818 8.2:-58026082 None:intergenic
CATGGAATTCAAGTTAGATT+CGG 0.413868 8.2:-58029222 None:intergenic
ATTCTCCGTACATAATCATT+AGG 0.419425 8.2:-58027367 None:intergenic
TGAAGATGGTAGCGATGAAC+AGG 0.428791 8.2:+58026314 MS.gene016408:CDS
TGCTTATTCTGGTGTGCAAA+AGG 0.442639 8.2:+58027448 MS.gene016408:CDS
TTCCTTCGGTGAATGCTTGA+AGG 0.447098 8.2:-58025986 None:intergenic
ATTCACCGAAGGAATTGGTT+TGG 0.452171 8.2:+58025995 MS.gene016408:CDS
TCGCCGCTGATGTCCTTGCT+TGG 0.458421 8.2:+58026099 MS.gene016408:CDS
AATCCAGGTGAAGGAGATGA+TGG 0.464837 8.2:+58029290 MS.gene016408:CDS
CCATGAACAAGGCAGTTAAT+GGG 0.478078 8.2:+58029240 MS.gene016408:CDS
CTTGAAAACTTACTCTATCA+AGG 0.485832 8.2:+58026267 MS.gene016408:CDS
CAAAACCAAACCAATTCCTT+CGG 0.487339 8.2:-58026000 None:intergenic
GGGTCTCAGCCGGAAAATCC+AGG 0.517000 8.2:+58029260 MS.gene016408:CDS
ATGCTGTGCTAGATTGTGAA+TGG 0.520448 8.2:+58029119 MS.gene016408:intron
TGCACACCAGAATAAGCAGC+TGG 0.521274 8.2:-58027443 None:intergenic
TCACCTGGATTATCCTCACC+TGG 0.521450 8.2:-58029278 None:intergenic
CATCCATCATCTCCTTCACC+TGG 0.522549 8.2:-58029293 None:intergenic
TCCTTCGGTGAATGCTTGAA+GGG 0.524962 8.2:-58025985 None:intergenic
GCCGTTGAAAATGAGTGGGC+TGG 0.531900 8.2:+58026047 MS.gene016408:CDS
GGCAGTTAATGGGTCTCAGC+CGG 0.532626 8.2:+58029250 MS.gene016408:CDS
CAAGGACATCAGCGGCGAGT+TGG 0.532997 8.2:-58026094 None:intergenic
CGGTTCGGAGCGCCGACCAA+CGG 0.534881 8.2:-58026025 None:intergenic
GTCAATATAGTGATTGAAGA+TGG 0.545813 8.2:+58026300 MS.gene016408:CDS
TGGATTGAGTGAACCAAGCA+AGG 0.551697 8.2:-58026112 None:intergenic
TGCTAGATTGTGAATGGCAA+TGG 0.553024 8.2:+58029125 MS.gene016408:intron
AATCCAGGTGAGGATAATCC+AGG 0.559977 8.2:+58029275 MS.gene016408:CDS
GGACGATAATTCAGCAAACA+TGG 0.569749 8.2:+58029181 MS.gene016408:CDS
GAAGACCTAATGATTATGTA+CGG 0.576974 8.2:+58027362 MS.gene016408:CDS
TCGGTGAATGCTTGAAGGGG+TGG 0.580683 8.2:-58025981 None:intergenic
TAATTCAGCAAACATGGATG+TGG 0.582482 8.2:+58029187 MS.gene016408:CDS
AAAACTTACTCTATCAAGGA+GGG 0.590140 8.2:+58026271 MS.gene016408:CDS
GCTTGGTTCACTCAATCCAA+AGG 0.593121 8.2:+58026116 MS.gene016408:CDS
ATGGATGGTCTGTTGTCTCA+AGG 0.606611 8.2:+58029309 MS.gene016408:CDS
GAACCGCCGTTGAAAATGAG+TGG 0.611433 8.2:+58026042 MS.gene016408:CDS
GGTGAGGATAATCCAGGTGA+AGG 0.612481 8.2:+58029281 MS.gene016408:CDS
AACCGCCGTTGAAAATGAGT+GGG 0.615075 8.2:+58026043 MS.gene016408:CDS
CAGGTGAAGGAGATGATGGA+TGG 0.615703 8.2:+58029294 MS.gene016408:CDS
ACGAATCCTAACAAGCTACA+AGG 0.631057 8.2:+58025957 MS.gene016408:CDS
CCTTCGGTGAATGCTTGAAG+GGG 0.635643 8.2:-58025984 None:intergenic
TAACTTGAATTCCATGAACA+AGG 0.636334 8.2:+58029229 MS.gene016408:CDS
CCCCTTCAAGCATTCACCGA+AGG 0.638533 8.2:+58025984 MS.gene016408:CDS
GAAAACTTACTCTATCAAGG+AGG 0.642840 8.2:+58026270 MS.gene016408:CDS
GAACCAAGCAAGGACATCAG+CGG 0.665981 8.2:-58026102 None:intergenic
TCAGCCGGAAAATCCAGGTG+AGG 0.693925 8.2:+58029265 MS.gene016408:CDS
GATGGTCTGTTGTCTCAAGG+AGG 0.721375 8.2:+58029312 MS.gene016408:CDS
TGATTCTGATGATAACACTG+AGG 0.835231 8.2:+58029160 MS.gene016408:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAACTATTAGAATTT+GGG + chr8.2:58026570-58026589 MS.gene016408:intron 10.0%
!!! TATGATATTATTATTTTGTT+TGG + chr8.2:58028503-58028522 MS.gene016408:intron 10.0%
!!! TTAAATTATGTATTTGTTTT+TGG + chr8.2:58026357-58026376 MS.gene016408:intron 10.0%
!! GATATAAAACTATTAGAATT+TGG + chr8.2:58026569-58026588 MS.gene016408:intron 15.0%
!!! ATATGTTAATTTAGCATTTT+TGG + chr8.2:58029015-58029034 MS.gene016408:intron 15.0%
!! AAAAAGAAATGATCAACTTT+AGG + chr8.2:58028423-58028442 MS.gene016408:intron 20.0%
!! AAAAGAAATGATCAACTTTA+GGG + chr8.2:58028424-58028443 MS.gene016408:intron 20.0%
!! AATTTGGAAATTAGTCAAAT+GGG + chr8.2:58026911-58026930 MS.gene016408:intron 20.0%
!! ATTTGCAATATCAAATTTGT+AGG + chr8.2:58027522-58027541 MS.gene016408:intron 20.0%
!! CAATTACACAATGTTATATT+AGG - chr8.2:58028866-58028885 None:intergenic 20.0%
!! CAGGAATTAAAAAGAAATAA+TGG - chr8.2:58028766-58028785 None:intergenic 20.0%
!! GATTTAAACTGTGAATAATT+TGG + chr8.2:58026421-58026440 MS.gene016408:intron 20.0%
!! GCTTAAACAATTAAAAAAAC+AGG - chr8.2:58026164-58026183 None:intergenic 20.0%
!! TTTGCAATATCAAATTTGTA+GGG + chr8.2:58027523-58027542 MS.gene016408:intron 20.0%
!!! AATTTAGCATTTTTGGTTTA+TGG + chr8.2:58029022-58029041 MS.gene016408:intron 20.0%
!!! CATTATTTCTTTTTAATTCC+TGG + chr8.2:58028764-58028783 MS.gene016408:intron 20.0%
!!! CTCTTTTGTTAGTAATTTTA+GGG + chr8.2:58027019-58027038 MS.gene016408:intron 20.0%
!!! GTTTAAAATTATGTTGACAA+AGG - chr8.2:58028070-58028089 None:intergenic 20.0%
!!! TATTATTTTGTTTGGCTTTT+TGG + chr8.2:58028511-58028530 MS.gene016408:intron 20.0%
!!! TCTTTTGTTAGTAATTTTAG+GGG + chr8.2:58027020-58027039 MS.gene016408:intron 20.0%
!!! TTGATCATTTCTTTTTAACA+CGG - chr8.2:58028419-58028438 None:intergenic 20.0%
!!! TTGCAATTTTAACATGTTTA+GGG - chr8.2:58026984-58027003 None:intergenic 20.0%
!!! TTTGCAATTTTAACATGTTT+AGG - chr8.2:58026985-58027004 None:intergenic 20.0%
!!! TTTTTGGAATATTACTTTAC+TGG + chr8.2:58026373-58026392 MS.gene016408:intron 20.0%
! AAAACTATTAGAATTTGGGT+TGG + chr8.2:58026574-58026593 MS.gene016408:intron 25.0%
! AAACAATTTCTCATCATTAG+AGG - chr8.2:58028014-58028033 None:intergenic 25.0%
! AAATAATGGCTTAAAAACTG+GGG - chr8.2:58028752-58028771 None:intergenic 25.0%
! ACATCAAACCATTAATTAGA+TGG + chr8.2:58028822-58028841 MS.gene016408:intron 25.0%
! AGAAATAATGGCTTAAAAAC+TGG - chr8.2:58028754-58028773 None:intergenic 25.0%
! ATTTCTCTGCATTAGAAATT+AGG + chr8.2:58027884-58027903 MS.gene016408:intron 25.0%
! CAATTTGGAAATTAGTCAAA+TGG + chr8.2:58026910-58026929 MS.gene016408:intron 25.0%
! CCTAAAATTACTAACAAAAG+AGG - chr8.2:58027021-58027040 None:intergenic 25.0%
! CTAATTCAACCTTATAAAAC+CGG + chr8.2:58026599-58026618 MS.gene016408:intron 25.0%
! GAAATAATGGCTTAAAAACT+GGG - chr8.2:58028753-58028772 None:intergenic 25.0%
! GAACATTTCCATCTAATTAA+TGG - chr8.2:58028833-58028852 None:intergenic 25.0%
! GTGATTAATTACAATACCTT+TGG - chr8.2:58026135-58026154 None:intergenic 25.0%
! TCTAATGATGAGAAATTGTT+TGG + chr8.2:58028013-58028032 MS.gene016408:intron 25.0%
! TTGTGTAATTGTAACTTTGA+TGG + chr8.2:58028875-58028894 MS.gene016408:intron 25.0%
!! AAACTATTAGAATTTGGGTT+GGG + chr8.2:58026575-58026594 MS.gene016408:intron 25.0%
!! ATTTTATAAGAGCAACACTT+TGG - chr8.2:58026478-58026497 None:intergenic 25.0%
!! CCAAATTGTTATTAGAAGAA+GGG - chr8.2:58026898-58026917 None:intergenic 25.0%
!! CCTCTTTTGTTAGTAATTTT+AGG + chr8.2:58027018-58027037 MS.gene016408:intron 25.0%
!! GGATATTTAGGTTTATATAG+AGG + chr8.2:58028532-58028551 MS.gene016408:intron 25.0%
!! GTGTTGCTCTTATAAAATTA+CGG + chr8.2:58026480-58026499 MS.gene016408:intron 25.0%
!! TATGATACCATATAGCATTT+TGG + chr8.2:58026798-58026817 MS.gene016408:intron 25.0%
!! TCCAAATTGTTATTAGAAGA+AGG - chr8.2:58026899-58026918 None:intergenic 25.0%
!!! AGGATATTTCAGGTTTTATT+AGG + chr8.2:58028633-58028652 MS.gene016408:intron 25.0%
!!! TAAACAAAAGCATTGATGTT+TGG + chr8.2:58026853-58026872 MS.gene016408:intron 25.0%
AAAACTTACTCTATCAAGGA+GGG + chr8.2:58026271-58026290 MS.gene016408:CDS 30.0%
AAATTAAGGCACAATGCATT+TGG + chr8.2:58027472-58027491 MS.gene016408:intron 30.0%
AACACATTCAAGGACTAAAT+TGG + chr8.2:58027062-58027081 MS.gene016408:intron 30.0%
ACACACACACACAAATTTAT+TGG + chr8.2:58027821-58027840 MS.gene016408:intron 30.0%
ATTAATGGTTTGATGTAAGC+TGG - chr8.2:58028818-58028837 None:intergenic 30.0%
ATTCTCCGTACATAATCATT+AGG - chr8.2:58027370-58027389 None:intergenic 30.0%
CACAAATTCTATTTGACCAA+GGG - chr8.2:58027228-58027247 None:intergenic 30.0%
CCACTTATAAACAATTGTTC+AGG + chr8.2:58026653-58026672 MS.gene016408:intron 30.0%
CCCTTCTTCTAATAACAATT+TGG + chr8.2:58026895-58026914 MS.gene016408:intron 30.0%
CCTGAACAATTGTTTATAAG+TGG - chr8.2:58026656-58026675 None:intergenic 30.0%
CTGAAATATCCTTTAAGCAA+GGG - chr8.2:58028625-58028644 None:intergenic 30.0%
CTTGAAAACTTACTCTATCA+AGG + chr8.2:58026267-58026286 MS.gene016408:CDS 30.0%
GAAGACCTAATGATTATGTA+CGG + chr8.2:58027362-58027381 MS.gene016408:CDS 30.0%
GGATTTCAATTTCTACATGA+TGG + chr8.2:58027565-58027584 MS.gene016408:intron 30.0%
GTACATGTTTGTGATAATAC+AGG + chr8.2:58027334-58027353 MS.gene016408:intron 30.0%
GTCAATATAGTGATTGAAGA+TGG + chr8.2:58026300-58026319 MS.gene016408:CDS 30.0%
TAACTTGAATTCCATGAACA+AGG + chr8.2:58029229-58029248 MS.gene016408:CDS 30.0%
TATCACTATAACTGCAATTG+AGG - chr8.2:58026553-58026572 None:intergenic 30.0%
TCTTGACAGCAAAAATTTAG+AGG + chr8.2:58028555-58028574 MS.gene016408:intron 30.0%
! AGTATTTGAGTTTGAGTTTC+CGG + chr8.2:58028595-58028614 MS.gene016408:intron 30.0%
! CAAGTATTTTCCTACAAGTT+GGG - chr8.2:58028915-58028934 None:intergenic 30.0%
! CATGGAATTCAAGTTAGATT+CGG - chr8.2:58029225-58029244 None:intergenic 30.0%
! CTTGATAGAGTAAGTTTTCA+AGG - chr8.2:58026269-58026288 None:intergenic 30.0%
! GGTATGTGTTTGATTGATTT+AGG + chr8.2:58027544-58027563 MS.gene016408:intron 30.0%
! TCTACATGATGGCATATTTT+AGG + chr8.2:58027576-58027595 MS.gene016408:intron 30.0%
!! ATACCATATAGCATTTTGGT+TGG + chr8.2:58026802-58026821 MS.gene016408:intron 30.0%
!! CGGTTTTATAAGGTTGAATT+AGG - chr8.2:58026601-58026620 None:intergenic 30.0%
!! TTCAAGTTAGATTCGGATTT+TGG - chr8.2:58029218-58029237 None:intergenic 30.0%
!!! GTTTGGCTTTTTGGATATTT+AGG + chr8.2:58028520-58028539 MS.gene016408:intron 30.0%
!!! TACCATATAGCATTTTGGTT+GGG + chr8.2:58026803-58026822 MS.gene016408:intron 30.0%
!!! TATTTCAGGTTTTATTAGGC+CGG + chr8.2:58028637-58028656 MS.gene016408:intron 30.0%
ACTCATGACATGTGTAATCA+AGG - chr8.2:58029060-58029079 None:intergenic 35.0%
AGGGTCAATGATCTCAATTT+AGG - chr8.2:58026879-58026898 None:intergenic 35.0%
ATGTACGGAGAATGTTTAGA+AGG + chr8.2:58027377-58027396 MS.gene016408:CDS 35.0%
CAAAACCAAACCAATTCCTT+CGG - chr8.2:58026003-58026022 None:intergenic 35.0%
CAACAGCTAATGGAGATATT+TGG - chr8.2:58028275-58028294 None:intergenic 35.0%
CCAACTTGTAGGAAAATACT+TGG + chr8.2:58028913-58028932 MS.gene016408:intron 35.0%
CCTGAAATATCCTTTAAGCA+AGG - chr8.2:58028626-58028645 None:intergenic 35.0%
CCTTATAAAACCGGAATGTA+AGG + chr8.2:58026608-58026627 MS.gene016408:intron 35.0%
CCTTGCTTAAAGGATATTTC+AGG + chr8.2:58028623-58028642 MS.gene016408:intron 35.0%
GAAAACTTACTCTATCAAGG+AGG + chr8.2:58026270-58026289 MS.gene016408:CDS 35.0%
GACAGCAAGTTACACTTATA+GGG + chr8.2:58027185-58027204 MS.gene016408:intron 35.0%
GCACAAATTCTATTTGACCA+AGG - chr8.2:58027229-58027248 None:intergenic 35.0%
GCATAAACTCACAAAAAGCA+CGG - chr8.2:58027919-58027938 None:intergenic 35.0%
GCTAATGTATCAACAGCTAA+TGG - chr8.2:58028285-58028304 None:intergenic 35.0%
GGTGTGCAAAAGGTAAATTA+AGG + chr8.2:58027458-58027477 MS.gene016408:intron 35.0%
GTCAGGAAATCAACTACAAT+AGG - chr8.2:58028960-58028979 None:intergenic 35.0%
GTCTCAAGGAGGAAAAATAA+GGG + chr8.2:58029323-58029342 MS.gene016408:CDS 35.0%
GTTGATACATTAGCTGTTGA+CGG + chr8.2:58028291-58028310 MS.gene016408:intron 35.0%
GTTTAGGGACTATATTGACA+GGG - chr8.2:58026969-58026988 None:intergenic 35.0%
TAATTCAGCAAACATGGATG+TGG + chr8.2:58029187-58029206 MS.gene016408:CDS 35.0%
TGACAGCAAGTTACACTTAT+AGG + chr8.2:58027184-58027203 MS.gene016408:intron 35.0%
TGATTCTGATGATAACACTG+AGG + chr8.2:58029160-58029179 MS.gene016408:CDS 35.0%
TGCAATTGAGGAAACATTTG+TGG - chr8.2:58026541-58026560 None:intergenic 35.0%
TGTCTCAAGGAGGAAAAATA+AGG + chr8.2:58029322-58029341 MS.gene016408:CDS 35.0%
TGTTTAGGGACTATATTGAC+AGG - chr8.2:58026970-58026989 None:intergenic 35.0%
TGTTTATGAGTCCCTTTGTA+AGG - chr8.2:58026839-58026858 None:intergenic 35.0%
TTAAAAACTGGGGAGAATGT+AGG - chr8.2:58028742-58028761 None:intergenic 35.0%
TTCTGAGTACTTCTCTTGAA+AGG - chr8.2:58028676-58028695 None:intergenic 35.0%
! ATGTAAGCTGGTTTATTGAG+GGG - chr8.2:58028806-58028825 None:intergenic 35.0%
! CCAAGTATTTTCCTACAAGT+TGG - chr8.2:58028916-58028935 None:intergenic 35.0%
! GATGTAAGCTGGTTTATTGA+GGG - chr8.2:58028807-58028826 None:intergenic 35.0%
! TATAAAGCGTTTCTGTGAAG+AGG - chr8.2:58026239-58026258 None:intergenic 35.0%
! TATTTGGAGCATGATCTGAA+TGG + chr8.2:58026739-58026758 MS.gene016408:intron 35.0%
! TCCTTGAATGTGTTTTTCCT+CGG - chr8.2:58027056-58027075 None:intergenic 35.0%
! TGACAGTGGTATTGAAGAAT+CGG + chr8.2:58028335-58028354 MS.gene016408:intron 35.0%
! TGATGTAAGCTGGTTTATTG+AGG - chr8.2:58028808-58028827 None:intergenic 35.0%
! TTTGCCATTTCGATTCATTC+AGG + chr8.2:58027154-58027173 MS.gene016408:intron 35.0%
!! ACATGATGGCATATTTTAGG+AGG + chr8.2:58027579-58027598 MS.gene016408:intron 35.0%
!! AGTGTAACTTGCTGTCATAT+TGG - chr8.2:58027181-58027200 None:intergenic 35.0%
!! CACTTCTAGGACTAGATATT+TGG + chr8.2:58026723-58026742 MS.gene016408:intron 35.0%
!! CCTTACATTCCGGTTTTATA+AGG - chr8.2:58026611-58026630 None:intergenic 35.0%
!! GACACAAACTCTAGTCTTAT+TGG + chr8.2:58027706-58027725 MS.gene016408:intron 35.0%
!! TACTAACAAAAGAGGCACTA+GGG - chr8.2:58027013-58027032 None:intergenic 35.0%
!! TGTTTTTGTCAGTGAAAGCA+AGG - chr8.2:58027944-58027963 None:intergenic 35.0%
!! TTACTAACAAAAGAGGCACT+AGG - chr8.2:58027014-58027033 None:intergenic 35.0%
!!! ATTTCAGGTTTTATTAGGCC+GGG + chr8.2:58028638-58028657 MS.gene016408:intron 35.0%
AAGGCACAATGCATTTGGAA+TGG + chr8.2:58027477-58027496 MS.gene016408:intron 40.0%
ACCGAGGAAAAACACATTCA+AGG + chr8.2:58027052-58027071 MS.gene016408:intron 40.0%
ACGAATCCTAACAAGCTACA+AGG + chr8.2:58025957-58025976 MS.gene016408:CDS 40.0%
AGGTGTGAAGGAATATCAGA+GGG - chr8.2:58028127-58028146 None:intergenic 40.0%
ATAGCCTATTCAAGATCCGT+TGG - chr8.2:58026781-58026800 None:intergenic 40.0%
ATGCTGTGCTAGATTGTGAA+TGG + chr8.2:58029119-58029138 MS.gene016408:intron 40.0%
ATTCACCGAAGGAATTGGTT+TGG + chr8.2:58025995-58026014 MS.gene016408:CDS 40.0%
ATTGTTTATAAGTGGCCGAG+TGG - chr8.2:58026648-58026667 None:intergenic 40.0%
CCATGAACAAGGCAGTTAAT+GGG + chr8.2:58029240-58029259 MS.gene016408:CDS 40.0%
GCCTAACTCATCCTTACAAA+GGG + chr8.2:58026825-58026844 MS.gene016408:intron 40.0%
GGACGATAATTCAGCAAACA+TGG + chr8.2:58029181-58029200 MS.gene016408:CDS 40.0%
TAAAACCGGAATGTAAGGTG+AGG + chr8.2:58026613-58026632 MS.gene016408:intron 40.0%
TAAGAGTCCCACATTTGAAG+TGG - chr8.2:58026684-58026703 None:intergenic 40.0%
TAATCAACAGCGTTCAATCC+CGG - chr8.2:58028461-58028480 None:intergenic 40.0%
TAGCCTATTCAAGATCCGTT+GGG - chr8.2:58026780-58026799 None:intergenic 40.0%
TATCTAGCGTACTCCAACAA+AGG - chr8.2:58027735-58027754 None:intergenic 40.0%
TCCATGAACAAGGCAGTTAA+TGG + chr8.2:58029239-58029258 MS.gene016408:CDS 40.0%
TCCCTTTGTAAGGATGAGTT+AGG - chr8.2:58026829-58026848 None:intergenic 40.0%
TGCTAGATTGTGAATGGCAA+TGG + chr8.2:58029125-58029144 MS.gene016408:intron 40.0%
TGCTTATTCTGGTGTGCAAA+AGG + chr8.2:58027448-58027467 MS.gene016408:CDS 40.0%
TGGTCCTGAATGAATCGAAA+TGG - chr8.2:58027161-58027180 None:intergenic 40.0%
TTGTTTATAAGTGGCCGAGT+GGG - chr8.2:58026647-58026666 None:intergenic 40.0%
! CCAAAACAGTGATTTTCCCT+TGG + chr8.2:58027209-58027228 MS.gene016408:intron 40.0%
! CCAAGGGAAAATCACTGTTT+TGG - chr8.2:58027212-58027231 None:intergenic 40.0%
! CTGTCATTTAGTCTCATGTC+AGG - chr8.2:58028977-58028996 None:intergenic 40.0%
! GTCTTATTGGCATCCTTTGT+TGG + chr8.2:58027719-58027738 MS.gene016408:intron 40.0%
! TTATCCTCACCTGGATTTTC+CGG - chr8.2:58029272-58029291 None:intergenic 40.0%
!! TAGAGGCTTTTGATGACTCA+CGG + chr8.2:58028572-58028591 MS.gene016408:intron 40.0%
!! TATTTTCCTACAAGTTGGGC+TGG - chr8.2:58028911-58028930 None:intergenic 40.0%
!!! TTGGTTTGGTTTTGAACCGT+TGG + chr8.2:58026009-58026028 MS.gene016408:CDS 40.0%
!!! TTTGGTTTTGAACCGTTGGT+CGG + chr8.2:58026013-58026032 MS.gene016408:CDS 40.0%
AAACTGGGGAGAATGTAGGA+AGG - chr8.2:58028738-58028757 None:intergenic 45.0%
AAAGGGTGGGAGAGAAACAT+GGG - chr8.2:58028199-58028218 None:intergenic 45.0%
AACCGCCGTTGAAAATGAGT+GGG + chr8.2:58026043-58026062 MS.gene016408:CDS 45.0%
AAGCAAGGAAGCCTGAGTAT+GGG - chr8.2:58028707-58028726 None:intergenic 45.0%
AAGCTGGTAGGAAATGGTAC+AGG - chr8.2:58028103-58028122 None:intergenic 45.0%
AATCCAGGTGAAGGAGATGA+TGG + chr8.2:58029290-58029309 MS.gene016408:CDS 45.0%
AATCCAGGTGAGGATAATCC+AGG + chr8.2:58029275-58029294 MS.gene016408:CDS 45.0%
ACAGTCCTCACCTTACATTC+CGG - chr8.2:58026621-58026640 None:intergenic 45.0%
ACCACTGTCAATAACCACAG+TGG - chr8.2:58028325-58028344 None:intergenic 45.0%
ACTTTCCCAAACTCAGGCTT+AGG + chr8.2:58028249-58028268 MS.gene016408:intron 45.0%
AGCTGGTAGGAAATGGTACA+GGG - chr8.2:58028102-58028121 None:intergenic 45.0%
AGGAATATCAGAGGGAAAGC+TGG - chr8.2:58028119-58028138 None:intergenic 45.0%
AGGCCATACCACTTCAAATG+TGG + chr8.2:58026673-58026692 MS.gene016408:intron 45.0%
ATATCAGAGGGAAAGCTGGT+AGG - chr8.2:58028115-58028134 None:intergenic 45.0%
ATGGATGGTCTGTTGTCTCA+AGG + chr8.2:58029309-58029328 MS.gene016408:CDS 45.0%
ATTTGGCCTAAGCCTGAGTT+TGG - chr8.2:58028258-58028277 None:intergenic 45.0%
CAAGCATTCACCGAAGGAAT+TGG + chr8.2:58025990-58026009 MS.gene016408:CDS 45.0%
CGCAAGTCTAAGTTTCAGAG+AGG + chr8.2:58028040-58028059 MS.gene016408:intron 45.0%
CGTAATCCAGCTGCTTATTC+TGG + chr8.2:58027437-58027456 MS.gene016408:CDS 45.0%
GAAAGGATATTCTCCCAACC+CGG - chr8.2:58028659-58028678 None:intergenic 45.0%
GAGGTGTGAAGGAATATCAG+AGG - chr8.2:58028128-58028147 None:intergenic 45.0%
GCTTGGTTCACTCAATCCAA+AGG + chr8.2:58026116-58026135 MS.gene016408:CDS 45.0%
GGCCATACCACTTCAAATGT+GGG + chr8.2:58026674-58026693 MS.gene016408:intron 45.0%
GGCCCAACCAAAATGCTATA+TGG - chr8.2:58026808-58026827 None:intergenic 45.0%
GGCCTAACTCATCCTTACAA+AGG + chr8.2:58026824-58026843 MS.gene016408:intron 45.0%
GTCAGTTAGACGCATAGGAT+GGG - chr8.2:58028161-58028180 None:intergenic 45.0%
TCCACTGTGGTTATTGACAG+TGG + chr8.2:58028321-58028340 MS.gene016408:intron 45.0%
TCCTTCGGTGAATGCTTGAA+GGG - chr8.2:58025988-58026007 None:intergenic 45.0%
TGGATTGAGTGAACCAAGCA+AGG - chr8.2:58026115-58026134 None:intergenic 45.0%
TGGTTTATTGAGGGGAGGAA+GGG - chr8.2:58028798-58028817 None:intergenic 45.0%
TGTTTATAAGTGGCCGAGTG+GGG - chr8.2:58026646-58026665 None:intergenic 45.0%
TTAGGGGACTAAATTGACCG+AGG + chr8.2:58027036-58027055 MS.gene016408:intron 45.0%
TTCCTTCGGTGAATGCTTGA+AGG - chr8.2:58025989-58026008 None:intergenic 45.0%
TTGCCCAACGGATCTTGAAT+AGG + chr8.2:58026774-58026793 MS.gene016408:intron 45.0%
TTTAGGGACTGCTTGATACC+GGG + chr8.2:58028440-58028459 MS.gene016408:intron 45.0%
TTTGGCCTAAGCCTGAGTTT+GGG - chr8.2:58028257-58028276 None:intergenic 45.0%
! ACTCATTTTCAACGGCGGTT+CGG - chr8.2:58026043-58026062 None:intergenic 45.0%
! AGTCCTAGAAGTGACTTGTG+AGG - chr8.2:58026716-58026735 None:intergenic 45.0%
! CCCATTAACTGCCTTGTTCA+TGG - chr8.2:58029243-58029262 None:intergenic 45.0%
! CTTTAGGGACTGCTTGATAC+CGG + chr8.2:58028439-58028458 MS.gene016408:intron 45.0%
! GTCCCACATTTGAAGTGGTA+TGG - chr8.2:58026679-58026698 None:intergenic 45.0%
! GTCCTAGAAGTGACTTGTGA+GGG - chr8.2:58026715-58026734 None:intergenic 45.0%
! TAAGCTGGTTTATTGAGGGG+AGG - chr8.2:58028803-58028822 None:intergenic 45.0%
! TCCAGCCCACTCATTTTCAA+CGG - chr8.2:58026051-58026070 None:intergenic 45.0%
! TCCTAGAAGTGACTTGTGAG+GGG - chr8.2:58026714-58026733 None:intergenic 45.0%
! TGAAGATGGTAGCGATGAAC+AGG + chr8.2:58026314-58026333 MS.gene016408:CDS 45.0%
!! TGAGAGATGCTAGAGGTGTT+TGG - chr8.2:58028224-58028243 None:intergenic 45.0%
!!! AGGTTTTATTAGGCCGGGTT+GGG + chr8.2:58028643-58028662 MS.gene016408:intron 45.0%
AAGGGTGGGAGAGAAACATG+GGG - chr8.2:58028198-58028217 None:intergenic 50.0%
AGCACGTCAGTTAGACGCAT+AGG - chr8.2:58028166-58028185 None:intergenic 50.0%
ATGTAGCCAGCCCAACTTGT+AGG + chr8.2:58028902-58028921 MS.gene016408:intron 50.0%
CAAAGGGTGGGAGAGAAACA+TGG - chr8.2:58028200-58028219 None:intergenic 50.0%
CAAGCAAGGAAGCCTGAGTA+TGG - chr8.2:58028708-58028727 None:intergenic 50.0%
CATCCATCATCTCCTTCACC+TGG - chr8.2:58029296-58029315 None:intergenic 50.0%
CATGTTTCTCTCCCACCCTT+TGG + chr8.2:58028198-58028217 MS.gene016408:intron 50.0%
CCTTCGGTGAATGCTTGAAG+GGG - chr8.2:58025987-58026006 None:intergenic 50.0%
CGTCAGTTAGACGCATAGGA+TGG - chr8.2:58028162-58028181 None:intergenic 50.0%
CTGGTTTATTGAGGGGAGGA+AGG - chr8.2:58028799-58028818 None:intergenic 50.0%
GAACCAAGCAAGGACATCAG+CGG - chr8.2:58026105-58026124 None:intergenic 50.0%
GAACCGCCGTTGAAAATGAG+TGG + chr8.2:58026042-58026061 MS.gene016408:CDS 50.0%
GAATTCGTGCTCCCATACTC+AGG + chr8.2:58028693-58028712 MS.gene016408:intron 50.0%
GAGAGGTGATTGAGGTGTGA+AGG - chr8.2:58028139-58028158 None:intergenic 50.0%
GAGGGAAAGCTGGTAGGAAA+TGG - chr8.2:58028109-58028128 None:intergenic 50.0%
GATGGTCTGTTGTCTCAAGG+AGG + chr8.2:58029312-58029331 MS.gene016408:CDS 50.0%
GGTGAGGATAATCCAGGTGA+AGG + chr8.2:58029281-58029300 MS.gene016408:CDS 50.0%
GGTTTATTGAGGGGAGGAAG+GGG - chr8.2:58028797-58028816 None:intergenic 50.0%
GTTTATAAGTGGCCGAGTGG+GGG - chr8.2:58026645-58026664 None:intergenic 50.0%
GTTTATTGAGGGGAGGAAGG+GGG - chr8.2:58028796-58028815 None:intergenic 50.0%
TAGGATGGGAGAGGTGATTG+AGG - chr8.2:58028147-58028166 None:intergenic 50.0%
TCACCTGGATTATCCTCACC+TGG - chr8.2:58029281-58029300 None:intergenic 50.0%
TCCCCTCACAAGTCACTTCT+AGG + chr8.2:58026710-58026729 MS.gene016408:intron 50.0%
TGCACACCAGAATAAGCAGC+TGG - chr8.2:58027446-58027465 None:intergenic 50.0%
TTAGACGCATAGGATGGGAG+AGG - chr8.2:58028156-58028175 None:intergenic 50.0%
TTTATAAGTGGCCGAGTGGG+GGG - chr8.2:58026644-58026663 None:intergenic 50.0%
! AGCCCACTCATTTTCAACGG+CGG - chr8.2:58026048-58026067 None:intergenic 50.0%
! TCCTTTAAGCAAGGGTGCAC+CGG - chr8.2:58028617-58028636 None:intergenic 50.0%
! TGACGGAACTTGTTCCACTG+TGG + chr8.2:58028308-58028327 MS.gene016408:intron 50.0%
!! CAGGTGAAGGAGATGATGGA+TGG + chr8.2:58029294-58029313 MS.gene016408:CDS 50.0%
!! GCTAGAGGTGTTTGGCCAAA+GGG - chr8.2:58028216-58028235 None:intergenic 50.0%
!! GGTGGTCCTTGTAGCTTGTT+AGG - chr8.2:58025966-58025985 None:intergenic 50.0%
!! TGCTAGAGGTGTTTGGCCAA+AGG - chr8.2:58028217-58028236 None:intergenic 50.0%
!!! CAGGTTTTATTAGGCCGGGT+TGG + chr8.2:58028642-58028661 MS.gene016408:intron 50.0%
ACGCGCACTTTCCCAAACTC+AGG + chr8.2:58028243-58028262 MS.gene016408:intron 55.0%
AGGAAGGTGGCTAGCAAGCA+AGG - chr8.2:58028722-58028741 None:intergenic 55.0%
AGGGTGGGAGAGAAACATGG+GGG - chr8.2:58028197-58028216 None:intergenic 55.0%
CCCCTTCAAGCATTCACCGA+AGG + chr8.2:58025984-58026003 MS.gene016408:CDS 55.0%
CCTGACAGCAAGTTGCCCAA+CGG + chr8.2:58026762-58026781 MS.gene016408:intron 55.0%
CTGGGGAGAATGTAGGAAGG+TGG - chr8.2:58028735-58028754 None:intergenic 55.0%
GCCGTTGAAAATGAGTGGGC+TGG + chr8.2:58026047-58026066 MS.gene016408:CDS 55.0%
TCAGCCGGAAAATCCAGGTG+AGG + chr8.2:58029265-58029284 MS.gene016408:CDS 55.0%
TCCGGTGCACCCTTGCTTAA+AGG + chr8.2:58028613-58028632 MS.gene016408:intron 55.0%
TCGGTGAATGCTTGAAGGGG+TGG - chr8.2:58025984-58026003 None:intergenic 55.0%
! GAGGTGTTTGGCCAAAGGGT+GGG - chr8.2:58028212-58028231 None:intergenic 55.0%
! GGCAGTTAATGGGTCTCAGC+CGG + chr8.2:58029250-58029269 MS.gene016408:CDS 55.0%
!! AGAGGTGTTTGGCCAAAGGG+TGG - chr8.2:58028213-58028232 None:intergenic 55.0%
CAAGGACATCAGCGGCGAGT+TGG - chr8.2:58026097-58026116 None:intergenic 60.0%
GGGTCTCAGCCGGAAAATCC+AGG + chr8.2:58029260-58029279 MS.gene016408:CDS 60.0%
GGGTGGGAGAGAAACATGGG+GGG - chr8.2:58028196-58028215 None:intergenic 60.0%
GTGCGCGTGAGAGATGCTAG+AGG - chr8.2:58028231-58028250 None:intergenic 60.0%
TCGCCGCTGATGTCCTTGCT+TGG + chr8.2:58026099-58026118 MS.gene016408:CDS 60.0%
TGAGGGGAGGAAGGGGGTAA+TGG - chr8.2:58028790-58028809 None:intergenic 60.0%
!! CCGTTGGGCAACTTGCTGTC+AGG - chr8.2:58026765-58026784 None:intergenic 60.0%
!! CGGCGAGTTGGTGAGCTTTG+AGG - chr8.2:58026085-58026104 None:intergenic 60.0%
GTGAGGACTGTCCCCCCACT+CGG + chr8.2:58026630-58026649 MS.gene016408:intron 65.0%
! GGAGGAAGGGGGTAATGGCC+AGG - chr8.2:58028785-58028804 None:intergenic 65.0%
!! CGGTTCGGAGCGCCGACCAA+CGG - chr8.2:58026028-58026047 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 58025954 58029358 58025954 ID=MS.gene016408
chr8.2 mRNA 58025954 58029358 58025954 ID=MS.gene016408.t1;Parent=MS.gene016408
chr8.2 exon 58025954 58026137 58025954 ID=MS.gene016408.t1.exon1;Parent=MS.gene016408.t1
chr8.2 CDS 58025954 58026137 58025954 ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1
chr8.2 exon 58026247 58026335 58026247 ID=MS.gene016408.t1.exon2;Parent=MS.gene016408.t1
chr8.2 CDS 58026247 58026335 58026247 ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1
chr8.2 exon 58027356 58027469 58027356 ID=MS.gene016408.t1.exon3;Parent=MS.gene016408.t1
chr8.2 CDS 58027356 58027469 58027356 ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1
chr8.2 exon 58029131 58029358 58029131 ID=MS.gene016408.t1.exon4;Parent=MS.gene016408.t1
chr8.2 CDS 58029131 58029358 58029131 ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1
Gene Sequence

>MS.gene016408

ATGACGAATCCTAACAAGCTACAAGGACCACCCCTTCAAGCATTCACCGAAGGAATTGGTTTGGTTTTGAACCGTTGGTCGGCGCTCCGAACCGCCGTTGAAAATGAGTGGGCTGGACGTGACACTAACCTCAAAGCTCACCAACTCGCCGCTGATGTCCTTGCTTGGTTCACTCAATCCAAAGGTATTGTAATTAATCACTTAATTCCTGTTTTTTTAATTGTTTAAGCTTGAATTTTATGATATTCTGATTTTTCATTCATTGTTTTTTTTTTTTCTTTTCCTCTTCACAGAAACGCTTTATATTGATGACCTTGAAAACTTACTCTATCAAGGAGGGCTTTCTGTCAATATAGTGATTGAAGATGGTAGCGATGAACAGGTCTTCATTTTCATTTTTTATTTAAATTATGTATTTGTTTTTGGAATATTACTTTACTGGTTAATTGTTAACTTTGCTAATCAATGATTTAAACTGTGAATAATTTGGTATCACAATGCATTGTGATCTTGTAGAAGCTCCAAAGTGTTGCTCTTATAAAATTACGGTGACTTGTCGTGATTATGTCAAACTCACTATGAATCCACAAATGTTTCCTCAATTGCAGTTATAGTGATATAAAACTATTAGAATTTGGGTTGGGCCTAATTCAACCTTATAAAACCGGAATGTAAGGTGAGGACTGTCCCCCCACTCGGCCACTTATAAACAATTGTTCAGGCCATACCACTTCAAATGTGGGACTCTTAATATAATCCCCTCACAAGTCACTTCTAGGACTAGATATTTGGAGCATGATCTGAATGGCCTGACAGCAAGTTGCCCAACGGATCTTGAATAGGCTATGATACCATATAGCATTTTGGTTGGGCCTAACTCATCCTTACAAAGGGACTCATAAACAAAAGCATTGATGTTTGGCCTAAATTGAGATCATTGACCCTTCTTCTAATAACAATTTGGAAATTAGTCAAATGGGCAAACGACATTTTAGTCTTTGAATGTGTGAAGCCCTGTCAATATAGTCCCTAAACATGTTAAAATTGCAAACATGTCCCTAGTGCCTCTTTTGTTAGTAATTTTAGGGGACTAAATTGACCGAGGAAAAACACATTCAAGGACTAAATTGGCTACTTAAAAACAAATTTGATGATCAAAATGACTAATAAAAAAAACATGTGAAGATGTTTTTTGTTTTTTTTGCCATTTCGATTCATTCAGGACCAATATGACAGCAAGTTACACTTATAGGGACCAAAACAGTGATTTTCCCTTGGTCAAATAGAATTTGTGCTTTGCATGTTCTGCTGACTAGTTACTTGTTGAAGATACATGCATGTATGTTGTGTCTGCATTGTTTGCGTGTTCTTACTTTTTTTGTACATGTTTGTGATAATACAGGTAGCTGAAGACCTAATGATTATGTACGGAGAATGTTTAGAAGGTAATTTTAGCTCTGTTGAGCGTCTCAGAGAAGCTAGTCGTAATCCAGCTGCTTATTCTGGTGTGCAAAAGGTAAATTAAGGCACAATGCATTTGGAATGGAAATTAACTGTTTTATTATTAGATTTGCAATATCAAATTTGTAGGGTATGTGTTTGATTGATTTAGGATTTCAATTTCTACATGATGGCATATTTTAGGAGGAAAGAATATTGAATTATTACTTGATGTGTTGTGTGTTCTATACATTAGTCTCATTAGCATCTTTTAGTGCTCTAGAAATATCTCTTCTATGCTATATATAGATAGACACAAACTCTAGTCTTATTGGCATCCTTTGTTGGAGTACGCTAGATATGTTCTATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAAATTTATTGGAGTGCTGAAATGTATTCGTAAATAAGTTGAGAGTTATTATATTTCTCTGCATTAGAAATTAGGTTAAAGCTACCGTGCTTTTTGTGAGTTTATGCTTCCTTGCTTTCACTGACAAAAACAGTGAAGAGATGCGAACGTGTGTATTTAAGTTTGATAGTACTGTAAATCCTCTAATGATGAGAAATTGTTTGGAAGACGCAAGTCTAAGTTTCAGAGAGGCACTCCTTTGTCAACATAATTTTAAACAATTTTTTTCCCTGTACCATTTCCTACCAGCTTTCCCTCTGATATTCCTTCACACCTCAATCACCTCTCCCATCCTATGCGTCTAACTGACGTGCTTCTAAATCCCCCCATGTTTCTCTCCCACCCTTTGGCCAAACACCTCTAGCATCTCTCACGCGCACTTTCCCAAACTCAGGCTTAGGCCAAATATCTCCATTAGCTGTTGATACATTAGCTGTTGACGGAACTTGTTCCACTGTGGTTATTGACAGTGGTATTGAAGAATCGGATGAAAATTATAATCTTTTCTTCATGATATCTGTGATATGATATAAACTGCTCTTACACCGTGTTAAAAAGAAATGATCAACTTTAGGGACTGCTTGATACCGGGATTGAACGCTGTTGATTAAATTACTTATTCTGTCTACGAGTATGATATTATTATTTTGTTTGGCTTTTTGGATATTTAGGTTTATATAGAGGTCTTGACAGCAAAAATTTAGAGGCTTTTGATGACTCACGGAGTATTTGAGTTTGAGTTTCCGGTGCACCCTTGCTTAAAGGATATTTCAGGTTTTATTAGGCCGGGTTGGGAGAATATCCTTTCAAGAGAAGTACTCAGAATTCGTGCTCCCATACTCAGGCTTCCTTGCTTGCTAGCCACCTTCCTACATTCTCCCCAGTTTTTAAGCCATTATTTCTTTTTAATTCCTGGCCATTACCCCCTTCCTCCCCTCAATAAACCAGCTTACATCAAACCATTAATTAGATGGAAATGTTCTTTCTGTGAACCTAATATAACATTGTGTAATTGTAACTTTGATGGTTCTATGTAGCCAGCCCAACTTGTAGGAAAATACTTGGTTGTTGATTTTCTTGTGAACACCTATTGTAGTTGATTTCCTGACATGAGACTAAATGACAGTAATTGTAAATTTGTTATATATGTTAATTTAGCATTTTTGGTTTATGGATACACATTTTTCCTTGATTACACATGTCATGAGTGCAATTAGATACTTTCATTGAATAATTTTTGAACATTTTATGCTGTGCTAGATTGTGAATGGCAATGGAGACGAAGATGATGATTCTGATGATAACACTGAGGACGATAATTCAGCAAACATGGATGTGGACATTCCAAAATCCGAATCTAACTTGAATTCCATGAACAAGGCAGTTAATGGGTCTCAGCCGGAAAATCCAGGTGAGGATAATCCAGGTGAAGGAGATGATGGATGGTCTGTTGTCTCAAGGAGGAAAAATAAGGGCAGAAAGAATTAG

Protein sequence

>MS.gene016408.t1

MTNPNKLQGPPLQAFTEGIGLVLNRWSALRTAVENEWAGRDTNLKAHQLAADVLAWFTQSKETLYIDDLENLLYQGGLSVNIVIEDGSDEQVAEDLMIMYGECLEGNFSSVERLREASRNPAAYSGVQKIVNGNGDEDDDSDDNTEDDNSANMDVDIPKSESNLNSMNKAVNGSQPENPGEDNPGEGDDGWSVVSRRKNKGRKN