Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016408.t1 | XP_003628092.1 | 92.2 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 2.00E-81 | 312 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016408.t1 | Q06672 | 31.0 | 100 | 69 | 0 | 15 | 114 | 32 | 131 | 4.1e-06 | 53.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016408.t1 | G7LJ82 | 92.2 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 1.5e-81 | 312.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene013415 | MS.gene016408 | PPI |
MS.gene016408 | MS.gene020871 | PPI |
MS.gene81244 | MS.gene016408 | PPI |
MS.gene38035 | MS.gene016408 | PPI |
MS.gene059340 | MS.gene016408 | PPI |
MS.gene049387 | MS.gene016408 | PPI |
MS.gene38222 | MS.gene016408 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016408.t1 | MTR_8g043450 | 92.195 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 1.33e-136 | 380 |
MS.gene016408.t1 | MTR_8g043430 | 42.775 | 173 | 92 | 4 | 1 | 170 | 1 | 169 | 8.48e-37 | 126 |
MS.gene016408.t1 | MTR_1g035200 | 52.273 | 132 | 60 | 2 | 1 | 132 | 91 | 219 | 4.76e-35 | 124 |
MS.gene016408.t1 | MTR_8g043410 | 42.748 | 131 | 74 | 1 | 1 | 130 | 1 | 131 | 2.33e-31 | 111 |
MS.gene016408.t1 | MTR_5g006380 | 48.148 | 81 | 41 | 1 | 17 | 96 | 18 | 98 | 1.50e-18 | 78.2 |
MS.gene016408.t1 | MTR_7g086210 | 34.579 | 107 | 67 | 2 | 12 | 116 | 252 | 357 | 4.74e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016408.t1 | AT5G27990 | 39.791 | 191 | 93 | 6 | 15 | 204 | 15 | 184 | 6.56e-28 | 104 |
MS.gene016408.t1 | AT5G27990 | 39.791 | 191 | 93 | 6 | 15 | 204 | 15 | 184 | 6.56e-28 | 104 |
MS.gene016408.t1 | AT3G22510 | 39.806 | 103 | 57 | 3 | 10 | 108 | 23 | 124 | 1.37e-16 | 73.2 |
Find 53 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAAGTTAGATTCGGATTT+TGG | 0.118567 | 8.2:-58029215 | None:intergenic |
CCCATTAACTGCCTTGTTCA+TGG | 0.257049 | 8.2:-58029240 | None:intergenic |
GGTGGTCCTTGTAGCTTGTT+AGG | 0.297509 | 8.2:-58025963 | None:intergenic |
CGTAATCCAGCTGCTTATTC+TGG | 0.316707 | 8.2:+58027437 | MS.gene016408:CDS |
TCCATGAACAAGGCAGTTAA+TGG | 0.322486 | 8.2:+58029239 | MS.gene016408:CDS |
CAAGCATTCACCGAAGGAAT+TGG | 0.332888 | 8.2:+58025990 | MS.gene016408:CDS |
ATGTACGGAGAATGTTTAGA+AGG | 0.404882 | 8.2:+58027377 | MS.gene016408:CDS |
CGGCGAGTTGGTGAGCTTTG+AGG | 0.405818 | 8.2:-58026082 | None:intergenic |
CATGGAATTCAAGTTAGATT+CGG | 0.413868 | 8.2:-58029222 | None:intergenic |
ATTCTCCGTACATAATCATT+AGG | 0.419425 | 8.2:-58027367 | None:intergenic |
TGAAGATGGTAGCGATGAAC+AGG | 0.428791 | 8.2:+58026314 | MS.gene016408:CDS |
TGCTTATTCTGGTGTGCAAA+AGG | 0.442639 | 8.2:+58027448 | MS.gene016408:CDS |
TTCCTTCGGTGAATGCTTGA+AGG | 0.447098 | 8.2:-58025986 | None:intergenic |
ATTCACCGAAGGAATTGGTT+TGG | 0.452171 | 8.2:+58025995 | MS.gene016408:CDS |
TCGCCGCTGATGTCCTTGCT+TGG | 0.458421 | 8.2:+58026099 | MS.gene016408:CDS |
AATCCAGGTGAAGGAGATGA+TGG | 0.464837 | 8.2:+58029290 | MS.gene016408:CDS |
CCATGAACAAGGCAGTTAAT+GGG | 0.478078 | 8.2:+58029240 | MS.gene016408:CDS |
CTTGAAAACTTACTCTATCA+AGG | 0.485832 | 8.2:+58026267 | MS.gene016408:CDS |
CAAAACCAAACCAATTCCTT+CGG | 0.487339 | 8.2:-58026000 | None:intergenic |
GGGTCTCAGCCGGAAAATCC+AGG | 0.517000 | 8.2:+58029260 | MS.gene016408:CDS |
ATGCTGTGCTAGATTGTGAA+TGG | 0.520448 | 8.2:+58029119 | MS.gene016408:intron |
TGCACACCAGAATAAGCAGC+TGG | 0.521274 | 8.2:-58027443 | None:intergenic |
TCACCTGGATTATCCTCACC+TGG | 0.521450 | 8.2:-58029278 | None:intergenic |
CATCCATCATCTCCTTCACC+TGG | 0.522549 | 8.2:-58029293 | None:intergenic |
TCCTTCGGTGAATGCTTGAA+GGG | 0.524962 | 8.2:-58025985 | None:intergenic |
GCCGTTGAAAATGAGTGGGC+TGG | 0.531900 | 8.2:+58026047 | MS.gene016408:CDS |
GGCAGTTAATGGGTCTCAGC+CGG | 0.532626 | 8.2:+58029250 | MS.gene016408:CDS |
CAAGGACATCAGCGGCGAGT+TGG | 0.532997 | 8.2:-58026094 | None:intergenic |
CGGTTCGGAGCGCCGACCAA+CGG | 0.534881 | 8.2:-58026025 | None:intergenic |
GTCAATATAGTGATTGAAGA+TGG | 0.545813 | 8.2:+58026300 | MS.gene016408:CDS |
TGGATTGAGTGAACCAAGCA+AGG | 0.551697 | 8.2:-58026112 | None:intergenic |
TGCTAGATTGTGAATGGCAA+TGG | 0.553024 | 8.2:+58029125 | MS.gene016408:intron |
AATCCAGGTGAGGATAATCC+AGG | 0.559977 | 8.2:+58029275 | MS.gene016408:CDS |
GGACGATAATTCAGCAAACA+TGG | 0.569749 | 8.2:+58029181 | MS.gene016408:CDS |
GAAGACCTAATGATTATGTA+CGG | 0.576974 | 8.2:+58027362 | MS.gene016408:CDS |
TCGGTGAATGCTTGAAGGGG+TGG | 0.580683 | 8.2:-58025981 | None:intergenic |
TAATTCAGCAAACATGGATG+TGG | 0.582482 | 8.2:+58029187 | MS.gene016408:CDS |
AAAACTTACTCTATCAAGGA+GGG | 0.590140 | 8.2:+58026271 | MS.gene016408:CDS |
GCTTGGTTCACTCAATCCAA+AGG | 0.593121 | 8.2:+58026116 | MS.gene016408:CDS |
ATGGATGGTCTGTTGTCTCA+AGG | 0.606611 | 8.2:+58029309 | MS.gene016408:CDS |
GAACCGCCGTTGAAAATGAG+TGG | 0.611433 | 8.2:+58026042 | MS.gene016408:CDS |
GGTGAGGATAATCCAGGTGA+AGG | 0.612481 | 8.2:+58029281 | MS.gene016408:CDS |
AACCGCCGTTGAAAATGAGT+GGG | 0.615075 | 8.2:+58026043 | MS.gene016408:CDS |
CAGGTGAAGGAGATGATGGA+TGG | 0.615703 | 8.2:+58029294 | MS.gene016408:CDS |
ACGAATCCTAACAAGCTACA+AGG | 0.631057 | 8.2:+58025957 | MS.gene016408:CDS |
CCTTCGGTGAATGCTTGAAG+GGG | 0.635643 | 8.2:-58025984 | None:intergenic |
TAACTTGAATTCCATGAACA+AGG | 0.636334 | 8.2:+58029229 | MS.gene016408:CDS |
CCCCTTCAAGCATTCACCGA+AGG | 0.638533 | 8.2:+58025984 | MS.gene016408:CDS |
GAAAACTTACTCTATCAAGG+AGG | 0.642840 | 8.2:+58026270 | MS.gene016408:CDS |
GAACCAAGCAAGGACATCAG+CGG | 0.665981 | 8.2:-58026102 | None:intergenic |
TCAGCCGGAAAATCCAGGTG+AGG | 0.693925 | 8.2:+58029265 | MS.gene016408:CDS |
GATGGTCTGTTGTCTCAAGG+AGG | 0.721375 | 8.2:+58029312 | MS.gene016408:CDS |
TGATTCTGATGATAACACTG+AGG | 0.835231 | 8.2:+58029160 | MS.gene016408:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAACTATTAGAATTT+GGG | + | chr8.2:58026570-58026589 | MS.gene016408:intron | 10.0% |
!!! | TATGATATTATTATTTTGTT+TGG | + | chr8.2:58028503-58028522 | MS.gene016408:intron | 10.0% |
!!! | TTAAATTATGTATTTGTTTT+TGG | + | chr8.2:58026357-58026376 | MS.gene016408:intron | 10.0% |
!! | GATATAAAACTATTAGAATT+TGG | + | chr8.2:58026569-58026588 | MS.gene016408:intron | 15.0% |
!!! | ATATGTTAATTTAGCATTTT+TGG | + | chr8.2:58029015-58029034 | MS.gene016408:intron | 15.0% |
!! | AAAAAGAAATGATCAACTTT+AGG | + | chr8.2:58028423-58028442 | MS.gene016408:intron | 20.0% |
!! | AAAAGAAATGATCAACTTTA+GGG | + | chr8.2:58028424-58028443 | MS.gene016408:intron | 20.0% |
!! | AATTTGGAAATTAGTCAAAT+GGG | + | chr8.2:58026911-58026930 | MS.gene016408:intron | 20.0% |
!! | ATTTGCAATATCAAATTTGT+AGG | + | chr8.2:58027522-58027541 | MS.gene016408:intron | 20.0% |
!! | CAATTACACAATGTTATATT+AGG | - | chr8.2:58028866-58028885 | None:intergenic | 20.0% |
!! | CAGGAATTAAAAAGAAATAA+TGG | - | chr8.2:58028766-58028785 | None:intergenic | 20.0% |
!! | GATTTAAACTGTGAATAATT+TGG | + | chr8.2:58026421-58026440 | MS.gene016408:intron | 20.0% |
!! | GCTTAAACAATTAAAAAAAC+AGG | - | chr8.2:58026164-58026183 | None:intergenic | 20.0% |
!! | TTTGCAATATCAAATTTGTA+GGG | + | chr8.2:58027523-58027542 | MS.gene016408:intron | 20.0% |
!!! | AATTTAGCATTTTTGGTTTA+TGG | + | chr8.2:58029022-58029041 | MS.gene016408:intron | 20.0% |
!!! | CATTATTTCTTTTTAATTCC+TGG | + | chr8.2:58028764-58028783 | MS.gene016408:intron | 20.0% |
!!! | CTCTTTTGTTAGTAATTTTA+GGG | + | chr8.2:58027019-58027038 | MS.gene016408:intron | 20.0% |
!!! | GTTTAAAATTATGTTGACAA+AGG | - | chr8.2:58028070-58028089 | None:intergenic | 20.0% |
!!! | TATTATTTTGTTTGGCTTTT+TGG | + | chr8.2:58028511-58028530 | MS.gene016408:intron | 20.0% |
!!! | TCTTTTGTTAGTAATTTTAG+GGG | + | chr8.2:58027020-58027039 | MS.gene016408:intron | 20.0% |
!!! | TTGATCATTTCTTTTTAACA+CGG | - | chr8.2:58028419-58028438 | None:intergenic | 20.0% |
!!! | TTGCAATTTTAACATGTTTA+GGG | - | chr8.2:58026984-58027003 | None:intergenic | 20.0% |
!!! | TTTGCAATTTTAACATGTTT+AGG | - | chr8.2:58026985-58027004 | None:intergenic | 20.0% |
!!! | TTTTTGGAATATTACTTTAC+TGG | + | chr8.2:58026373-58026392 | MS.gene016408:intron | 20.0% |
! | AAAACTATTAGAATTTGGGT+TGG | + | chr8.2:58026574-58026593 | MS.gene016408:intron | 25.0% |
! | AAACAATTTCTCATCATTAG+AGG | - | chr8.2:58028014-58028033 | None:intergenic | 25.0% |
! | AAATAATGGCTTAAAAACTG+GGG | - | chr8.2:58028752-58028771 | None:intergenic | 25.0% |
! | ACATCAAACCATTAATTAGA+TGG | + | chr8.2:58028822-58028841 | MS.gene016408:intron | 25.0% |
! | AGAAATAATGGCTTAAAAAC+TGG | - | chr8.2:58028754-58028773 | None:intergenic | 25.0% |
! | ATTTCTCTGCATTAGAAATT+AGG | + | chr8.2:58027884-58027903 | MS.gene016408:intron | 25.0% |
! | CAATTTGGAAATTAGTCAAA+TGG | + | chr8.2:58026910-58026929 | MS.gene016408:intron | 25.0% |
! | CCTAAAATTACTAACAAAAG+AGG | - | chr8.2:58027021-58027040 | None:intergenic | 25.0% |
! | CTAATTCAACCTTATAAAAC+CGG | + | chr8.2:58026599-58026618 | MS.gene016408:intron | 25.0% |
! | GAAATAATGGCTTAAAAACT+GGG | - | chr8.2:58028753-58028772 | None:intergenic | 25.0% |
! | GAACATTTCCATCTAATTAA+TGG | - | chr8.2:58028833-58028852 | None:intergenic | 25.0% |
! | GTGATTAATTACAATACCTT+TGG | - | chr8.2:58026135-58026154 | None:intergenic | 25.0% |
! | TCTAATGATGAGAAATTGTT+TGG | + | chr8.2:58028013-58028032 | MS.gene016408:intron | 25.0% |
! | TTGTGTAATTGTAACTTTGA+TGG | + | chr8.2:58028875-58028894 | MS.gene016408:intron | 25.0% |
!! | AAACTATTAGAATTTGGGTT+GGG | + | chr8.2:58026575-58026594 | MS.gene016408:intron | 25.0% |
!! | ATTTTATAAGAGCAACACTT+TGG | - | chr8.2:58026478-58026497 | None:intergenic | 25.0% |
!! | CCAAATTGTTATTAGAAGAA+GGG | - | chr8.2:58026898-58026917 | None:intergenic | 25.0% |
!! | CCTCTTTTGTTAGTAATTTT+AGG | + | chr8.2:58027018-58027037 | MS.gene016408:intron | 25.0% |
!! | GGATATTTAGGTTTATATAG+AGG | + | chr8.2:58028532-58028551 | MS.gene016408:intron | 25.0% |
!! | GTGTTGCTCTTATAAAATTA+CGG | + | chr8.2:58026480-58026499 | MS.gene016408:intron | 25.0% |
!! | TATGATACCATATAGCATTT+TGG | + | chr8.2:58026798-58026817 | MS.gene016408:intron | 25.0% |
!! | TCCAAATTGTTATTAGAAGA+AGG | - | chr8.2:58026899-58026918 | None:intergenic | 25.0% |
!!! | AGGATATTTCAGGTTTTATT+AGG | + | chr8.2:58028633-58028652 | MS.gene016408:intron | 25.0% |
!!! | TAAACAAAAGCATTGATGTT+TGG | + | chr8.2:58026853-58026872 | MS.gene016408:intron | 25.0% |
AAAACTTACTCTATCAAGGA+GGG | + | chr8.2:58026271-58026290 | MS.gene016408:CDS | 30.0% | |
AAATTAAGGCACAATGCATT+TGG | + | chr8.2:58027472-58027491 | MS.gene016408:intron | 30.0% | |
AACACATTCAAGGACTAAAT+TGG | + | chr8.2:58027062-58027081 | MS.gene016408:intron | 30.0% | |
ACACACACACACAAATTTAT+TGG | + | chr8.2:58027821-58027840 | MS.gene016408:intron | 30.0% | |
ATTAATGGTTTGATGTAAGC+TGG | - | chr8.2:58028818-58028837 | None:intergenic | 30.0% | |
ATTCTCCGTACATAATCATT+AGG | - | chr8.2:58027370-58027389 | None:intergenic | 30.0% | |
CACAAATTCTATTTGACCAA+GGG | - | chr8.2:58027228-58027247 | None:intergenic | 30.0% | |
CCACTTATAAACAATTGTTC+AGG | + | chr8.2:58026653-58026672 | MS.gene016408:intron | 30.0% | |
CCCTTCTTCTAATAACAATT+TGG | + | chr8.2:58026895-58026914 | MS.gene016408:intron | 30.0% | |
CCTGAACAATTGTTTATAAG+TGG | - | chr8.2:58026656-58026675 | None:intergenic | 30.0% | |
CTGAAATATCCTTTAAGCAA+GGG | - | chr8.2:58028625-58028644 | None:intergenic | 30.0% | |
CTTGAAAACTTACTCTATCA+AGG | + | chr8.2:58026267-58026286 | MS.gene016408:CDS | 30.0% | |
GAAGACCTAATGATTATGTA+CGG | + | chr8.2:58027362-58027381 | MS.gene016408:CDS | 30.0% | |
GGATTTCAATTTCTACATGA+TGG | + | chr8.2:58027565-58027584 | MS.gene016408:intron | 30.0% | |
GTACATGTTTGTGATAATAC+AGG | + | chr8.2:58027334-58027353 | MS.gene016408:intron | 30.0% | |
GTCAATATAGTGATTGAAGA+TGG | + | chr8.2:58026300-58026319 | MS.gene016408:CDS | 30.0% | |
TAACTTGAATTCCATGAACA+AGG | + | chr8.2:58029229-58029248 | MS.gene016408:CDS | 30.0% | |
TATCACTATAACTGCAATTG+AGG | - | chr8.2:58026553-58026572 | None:intergenic | 30.0% | |
TCTTGACAGCAAAAATTTAG+AGG | + | chr8.2:58028555-58028574 | MS.gene016408:intron | 30.0% | |
! | AGTATTTGAGTTTGAGTTTC+CGG | + | chr8.2:58028595-58028614 | MS.gene016408:intron | 30.0% |
! | CAAGTATTTTCCTACAAGTT+GGG | - | chr8.2:58028915-58028934 | None:intergenic | 30.0% |
! | CATGGAATTCAAGTTAGATT+CGG | - | chr8.2:58029225-58029244 | None:intergenic | 30.0% |
! | CTTGATAGAGTAAGTTTTCA+AGG | - | chr8.2:58026269-58026288 | None:intergenic | 30.0% |
! | GGTATGTGTTTGATTGATTT+AGG | + | chr8.2:58027544-58027563 | MS.gene016408:intron | 30.0% |
! | TCTACATGATGGCATATTTT+AGG | + | chr8.2:58027576-58027595 | MS.gene016408:intron | 30.0% |
!! | ATACCATATAGCATTTTGGT+TGG | + | chr8.2:58026802-58026821 | MS.gene016408:intron | 30.0% |
!! | CGGTTTTATAAGGTTGAATT+AGG | - | chr8.2:58026601-58026620 | None:intergenic | 30.0% |
!! | TTCAAGTTAGATTCGGATTT+TGG | - | chr8.2:58029218-58029237 | None:intergenic | 30.0% |
!!! | GTTTGGCTTTTTGGATATTT+AGG | + | chr8.2:58028520-58028539 | MS.gene016408:intron | 30.0% |
!!! | TACCATATAGCATTTTGGTT+GGG | + | chr8.2:58026803-58026822 | MS.gene016408:intron | 30.0% |
!!! | TATTTCAGGTTTTATTAGGC+CGG | + | chr8.2:58028637-58028656 | MS.gene016408:intron | 30.0% |
ACTCATGACATGTGTAATCA+AGG | - | chr8.2:58029060-58029079 | None:intergenic | 35.0% | |
AGGGTCAATGATCTCAATTT+AGG | - | chr8.2:58026879-58026898 | None:intergenic | 35.0% | |
ATGTACGGAGAATGTTTAGA+AGG | + | chr8.2:58027377-58027396 | MS.gene016408:CDS | 35.0% | |
CAAAACCAAACCAATTCCTT+CGG | - | chr8.2:58026003-58026022 | None:intergenic | 35.0% | |
CAACAGCTAATGGAGATATT+TGG | - | chr8.2:58028275-58028294 | None:intergenic | 35.0% | |
CCAACTTGTAGGAAAATACT+TGG | + | chr8.2:58028913-58028932 | MS.gene016408:intron | 35.0% | |
CCTGAAATATCCTTTAAGCA+AGG | - | chr8.2:58028626-58028645 | None:intergenic | 35.0% | |
CCTTATAAAACCGGAATGTA+AGG | + | chr8.2:58026608-58026627 | MS.gene016408:intron | 35.0% | |
CCTTGCTTAAAGGATATTTC+AGG | + | chr8.2:58028623-58028642 | MS.gene016408:intron | 35.0% | |
GAAAACTTACTCTATCAAGG+AGG | + | chr8.2:58026270-58026289 | MS.gene016408:CDS | 35.0% | |
GACAGCAAGTTACACTTATA+GGG | + | chr8.2:58027185-58027204 | MS.gene016408:intron | 35.0% | |
GCACAAATTCTATTTGACCA+AGG | - | chr8.2:58027229-58027248 | None:intergenic | 35.0% | |
GCATAAACTCACAAAAAGCA+CGG | - | chr8.2:58027919-58027938 | None:intergenic | 35.0% | |
GCTAATGTATCAACAGCTAA+TGG | - | chr8.2:58028285-58028304 | None:intergenic | 35.0% | |
GGTGTGCAAAAGGTAAATTA+AGG | + | chr8.2:58027458-58027477 | MS.gene016408:intron | 35.0% | |
GTCAGGAAATCAACTACAAT+AGG | - | chr8.2:58028960-58028979 | None:intergenic | 35.0% | |
GTCTCAAGGAGGAAAAATAA+GGG | + | chr8.2:58029323-58029342 | MS.gene016408:CDS | 35.0% | |
GTTGATACATTAGCTGTTGA+CGG | + | chr8.2:58028291-58028310 | MS.gene016408:intron | 35.0% | |
GTTTAGGGACTATATTGACA+GGG | - | chr8.2:58026969-58026988 | None:intergenic | 35.0% | |
TAATTCAGCAAACATGGATG+TGG | + | chr8.2:58029187-58029206 | MS.gene016408:CDS | 35.0% | |
TGACAGCAAGTTACACTTAT+AGG | + | chr8.2:58027184-58027203 | MS.gene016408:intron | 35.0% | |
TGATTCTGATGATAACACTG+AGG | + | chr8.2:58029160-58029179 | MS.gene016408:CDS | 35.0% | |
TGCAATTGAGGAAACATTTG+TGG | - | chr8.2:58026541-58026560 | None:intergenic | 35.0% | |
TGTCTCAAGGAGGAAAAATA+AGG | + | chr8.2:58029322-58029341 | MS.gene016408:CDS | 35.0% | |
TGTTTAGGGACTATATTGAC+AGG | - | chr8.2:58026970-58026989 | None:intergenic | 35.0% | |
TGTTTATGAGTCCCTTTGTA+AGG | - | chr8.2:58026839-58026858 | None:intergenic | 35.0% | |
TTAAAAACTGGGGAGAATGT+AGG | - | chr8.2:58028742-58028761 | None:intergenic | 35.0% | |
TTCTGAGTACTTCTCTTGAA+AGG | - | chr8.2:58028676-58028695 | None:intergenic | 35.0% | |
! | ATGTAAGCTGGTTTATTGAG+GGG | - | chr8.2:58028806-58028825 | None:intergenic | 35.0% |
! | CCAAGTATTTTCCTACAAGT+TGG | - | chr8.2:58028916-58028935 | None:intergenic | 35.0% |
! | GATGTAAGCTGGTTTATTGA+GGG | - | chr8.2:58028807-58028826 | None:intergenic | 35.0% |
! | TATAAAGCGTTTCTGTGAAG+AGG | - | chr8.2:58026239-58026258 | None:intergenic | 35.0% |
! | TATTTGGAGCATGATCTGAA+TGG | + | chr8.2:58026739-58026758 | MS.gene016408:intron | 35.0% |
! | TCCTTGAATGTGTTTTTCCT+CGG | - | chr8.2:58027056-58027075 | None:intergenic | 35.0% |
! | TGACAGTGGTATTGAAGAAT+CGG | + | chr8.2:58028335-58028354 | MS.gene016408:intron | 35.0% |
! | TGATGTAAGCTGGTTTATTG+AGG | - | chr8.2:58028808-58028827 | None:intergenic | 35.0% |
! | TTTGCCATTTCGATTCATTC+AGG | + | chr8.2:58027154-58027173 | MS.gene016408:intron | 35.0% |
!! | ACATGATGGCATATTTTAGG+AGG | + | chr8.2:58027579-58027598 | MS.gene016408:intron | 35.0% |
!! | AGTGTAACTTGCTGTCATAT+TGG | - | chr8.2:58027181-58027200 | None:intergenic | 35.0% |
!! | CACTTCTAGGACTAGATATT+TGG | + | chr8.2:58026723-58026742 | MS.gene016408:intron | 35.0% |
!! | CCTTACATTCCGGTTTTATA+AGG | - | chr8.2:58026611-58026630 | None:intergenic | 35.0% |
!! | GACACAAACTCTAGTCTTAT+TGG | + | chr8.2:58027706-58027725 | MS.gene016408:intron | 35.0% |
!! | TACTAACAAAAGAGGCACTA+GGG | - | chr8.2:58027013-58027032 | None:intergenic | 35.0% |
!! | TGTTTTTGTCAGTGAAAGCA+AGG | - | chr8.2:58027944-58027963 | None:intergenic | 35.0% |
!! | TTACTAACAAAAGAGGCACT+AGG | - | chr8.2:58027014-58027033 | None:intergenic | 35.0% |
!!! | ATTTCAGGTTTTATTAGGCC+GGG | + | chr8.2:58028638-58028657 | MS.gene016408:intron | 35.0% |
AAGGCACAATGCATTTGGAA+TGG | + | chr8.2:58027477-58027496 | MS.gene016408:intron | 40.0% | |
ACCGAGGAAAAACACATTCA+AGG | + | chr8.2:58027052-58027071 | MS.gene016408:intron | 40.0% | |
ACGAATCCTAACAAGCTACA+AGG | + | chr8.2:58025957-58025976 | MS.gene016408:CDS | 40.0% | |
AGGTGTGAAGGAATATCAGA+GGG | - | chr8.2:58028127-58028146 | None:intergenic | 40.0% | |
ATAGCCTATTCAAGATCCGT+TGG | - | chr8.2:58026781-58026800 | None:intergenic | 40.0% | |
ATGCTGTGCTAGATTGTGAA+TGG | + | chr8.2:58029119-58029138 | MS.gene016408:intron | 40.0% | |
ATTCACCGAAGGAATTGGTT+TGG | + | chr8.2:58025995-58026014 | MS.gene016408:CDS | 40.0% | |
ATTGTTTATAAGTGGCCGAG+TGG | - | chr8.2:58026648-58026667 | None:intergenic | 40.0% | |
CCATGAACAAGGCAGTTAAT+GGG | + | chr8.2:58029240-58029259 | MS.gene016408:CDS | 40.0% | |
GCCTAACTCATCCTTACAAA+GGG | + | chr8.2:58026825-58026844 | MS.gene016408:intron | 40.0% | |
GGACGATAATTCAGCAAACA+TGG | + | chr8.2:58029181-58029200 | MS.gene016408:CDS | 40.0% | |
TAAAACCGGAATGTAAGGTG+AGG | + | chr8.2:58026613-58026632 | MS.gene016408:intron | 40.0% | |
TAAGAGTCCCACATTTGAAG+TGG | - | chr8.2:58026684-58026703 | None:intergenic | 40.0% | |
TAATCAACAGCGTTCAATCC+CGG | - | chr8.2:58028461-58028480 | None:intergenic | 40.0% | |
TAGCCTATTCAAGATCCGTT+GGG | - | chr8.2:58026780-58026799 | None:intergenic | 40.0% | |
TATCTAGCGTACTCCAACAA+AGG | - | chr8.2:58027735-58027754 | None:intergenic | 40.0% | |
TCCATGAACAAGGCAGTTAA+TGG | + | chr8.2:58029239-58029258 | MS.gene016408:CDS | 40.0% | |
TCCCTTTGTAAGGATGAGTT+AGG | - | chr8.2:58026829-58026848 | None:intergenic | 40.0% | |
TGCTAGATTGTGAATGGCAA+TGG | + | chr8.2:58029125-58029144 | MS.gene016408:intron | 40.0% | |
TGCTTATTCTGGTGTGCAAA+AGG | + | chr8.2:58027448-58027467 | MS.gene016408:CDS | 40.0% | |
TGGTCCTGAATGAATCGAAA+TGG | - | chr8.2:58027161-58027180 | None:intergenic | 40.0% | |
TTGTTTATAAGTGGCCGAGT+GGG | - | chr8.2:58026647-58026666 | None:intergenic | 40.0% | |
! | CCAAAACAGTGATTTTCCCT+TGG | + | chr8.2:58027209-58027228 | MS.gene016408:intron | 40.0% |
! | CCAAGGGAAAATCACTGTTT+TGG | - | chr8.2:58027212-58027231 | None:intergenic | 40.0% |
! | CTGTCATTTAGTCTCATGTC+AGG | - | chr8.2:58028977-58028996 | None:intergenic | 40.0% |
! | GTCTTATTGGCATCCTTTGT+TGG | + | chr8.2:58027719-58027738 | MS.gene016408:intron | 40.0% |
! | TTATCCTCACCTGGATTTTC+CGG | - | chr8.2:58029272-58029291 | None:intergenic | 40.0% |
!! | TAGAGGCTTTTGATGACTCA+CGG | + | chr8.2:58028572-58028591 | MS.gene016408:intron | 40.0% |
!! | TATTTTCCTACAAGTTGGGC+TGG | - | chr8.2:58028911-58028930 | None:intergenic | 40.0% |
!!! | TTGGTTTGGTTTTGAACCGT+TGG | + | chr8.2:58026009-58026028 | MS.gene016408:CDS | 40.0% |
!!! | TTTGGTTTTGAACCGTTGGT+CGG | + | chr8.2:58026013-58026032 | MS.gene016408:CDS | 40.0% |
AAACTGGGGAGAATGTAGGA+AGG | - | chr8.2:58028738-58028757 | None:intergenic | 45.0% | |
AAAGGGTGGGAGAGAAACAT+GGG | - | chr8.2:58028199-58028218 | None:intergenic | 45.0% | |
AACCGCCGTTGAAAATGAGT+GGG | + | chr8.2:58026043-58026062 | MS.gene016408:CDS | 45.0% | |
AAGCAAGGAAGCCTGAGTAT+GGG | - | chr8.2:58028707-58028726 | None:intergenic | 45.0% | |
AAGCTGGTAGGAAATGGTAC+AGG | - | chr8.2:58028103-58028122 | None:intergenic | 45.0% | |
AATCCAGGTGAAGGAGATGA+TGG | + | chr8.2:58029290-58029309 | MS.gene016408:CDS | 45.0% | |
AATCCAGGTGAGGATAATCC+AGG | + | chr8.2:58029275-58029294 | MS.gene016408:CDS | 45.0% | |
ACAGTCCTCACCTTACATTC+CGG | - | chr8.2:58026621-58026640 | None:intergenic | 45.0% | |
ACCACTGTCAATAACCACAG+TGG | - | chr8.2:58028325-58028344 | None:intergenic | 45.0% | |
ACTTTCCCAAACTCAGGCTT+AGG | + | chr8.2:58028249-58028268 | MS.gene016408:intron | 45.0% | |
AGCTGGTAGGAAATGGTACA+GGG | - | chr8.2:58028102-58028121 | None:intergenic | 45.0% | |
AGGAATATCAGAGGGAAAGC+TGG | - | chr8.2:58028119-58028138 | None:intergenic | 45.0% | |
AGGCCATACCACTTCAAATG+TGG | + | chr8.2:58026673-58026692 | MS.gene016408:intron | 45.0% | |
ATATCAGAGGGAAAGCTGGT+AGG | - | chr8.2:58028115-58028134 | None:intergenic | 45.0% | |
ATGGATGGTCTGTTGTCTCA+AGG | + | chr8.2:58029309-58029328 | MS.gene016408:CDS | 45.0% | |
ATTTGGCCTAAGCCTGAGTT+TGG | - | chr8.2:58028258-58028277 | None:intergenic | 45.0% | |
CAAGCATTCACCGAAGGAAT+TGG | + | chr8.2:58025990-58026009 | MS.gene016408:CDS | 45.0% | |
CGCAAGTCTAAGTTTCAGAG+AGG | + | chr8.2:58028040-58028059 | MS.gene016408:intron | 45.0% | |
CGTAATCCAGCTGCTTATTC+TGG | + | chr8.2:58027437-58027456 | MS.gene016408:CDS | 45.0% | |
GAAAGGATATTCTCCCAACC+CGG | - | chr8.2:58028659-58028678 | None:intergenic | 45.0% | |
GAGGTGTGAAGGAATATCAG+AGG | - | chr8.2:58028128-58028147 | None:intergenic | 45.0% | |
GCTTGGTTCACTCAATCCAA+AGG | + | chr8.2:58026116-58026135 | MS.gene016408:CDS | 45.0% | |
GGCCATACCACTTCAAATGT+GGG | + | chr8.2:58026674-58026693 | MS.gene016408:intron | 45.0% | |
GGCCCAACCAAAATGCTATA+TGG | - | chr8.2:58026808-58026827 | None:intergenic | 45.0% | |
GGCCTAACTCATCCTTACAA+AGG | + | chr8.2:58026824-58026843 | MS.gene016408:intron | 45.0% | |
GTCAGTTAGACGCATAGGAT+GGG | - | chr8.2:58028161-58028180 | None:intergenic | 45.0% | |
TCCACTGTGGTTATTGACAG+TGG | + | chr8.2:58028321-58028340 | MS.gene016408:intron | 45.0% | |
TCCTTCGGTGAATGCTTGAA+GGG | - | chr8.2:58025988-58026007 | None:intergenic | 45.0% | |
TGGATTGAGTGAACCAAGCA+AGG | - | chr8.2:58026115-58026134 | None:intergenic | 45.0% | |
TGGTTTATTGAGGGGAGGAA+GGG | - | chr8.2:58028798-58028817 | None:intergenic | 45.0% | |
TGTTTATAAGTGGCCGAGTG+GGG | - | chr8.2:58026646-58026665 | None:intergenic | 45.0% | |
TTAGGGGACTAAATTGACCG+AGG | + | chr8.2:58027036-58027055 | MS.gene016408:intron | 45.0% | |
TTCCTTCGGTGAATGCTTGA+AGG | - | chr8.2:58025989-58026008 | None:intergenic | 45.0% | |
TTGCCCAACGGATCTTGAAT+AGG | + | chr8.2:58026774-58026793 | MS.gene016408:intron | 45.0% | |
TTTAGGGACTGCTTGATACC+GGG | + | chr8.2:58028440-58028459 | MS.gene016408:intron | 45.0% | |
TTTGGCCTAAGCCTGAGTTT+GGG | - | chr8.2:58028257-58028276 | None:intergenic | 45.0% | |
! | ACTCATTTTCAACGGCGGTT+CGG | - | chr8.2:58026043-58026062 | None:intergenic | 45.0% |
! | AGTCCTAGAAGTGACTTGTG+AGG | - | chr8.2:58026716-58026735 | None:intergenic | 45.0% |
! | CCCATTAACTGCCTTGTTCA+TGG | - | chr8.2:58029243-58029262 | None:intergenic | 45.0% |
! | CTTTAGGGACTGCTTGATAC+CGG | + | chr8.2:58028439-58028458 | MS.gene016408:intron | 45.0% |
! | GTCCCACATTTGAAGTGGTA+TGG | - | chr8.2:58026679-58026698 | None:intergenic | 45.0% |
! | GTCCTAGAAGTGACTTGTGA+GGG | - | chr8.2:58026715-58026734 | None:intergenic | 45.0% |
! | TAAGCTGGTTTATTGAGGGG+AGG | - | chr8.2:58028803-58028822 | None:intergenic | 45.0% |
! | TCCAGCCCACTCATTTTCAA+CGG | - | chr8.2:58026051-58026070 | None:intergenic | 45.0% |
! | TCCTAGAAGTGACTTGTGAG+GGG | - | chr8.2:58026714-58026733 | None:intergenic | 45.0% |
! | TGAAGATGGTAGCGATGAAC+AGG | + | chr8.2:58026314-58026333 | MS.gene016408:CDS | 45.0% |
!! | TGAGAGATGCTAGAGGTGTT+TGG | - | chr8.2:58028224-58028243 | None:intergenic | 45.0% |
!!! | AGGTTTTATTAGGCCGGGTT+GGG | + | chr8.2:58028643-58028662 | MS.gene016408:intron | 45.0% |
AAGGGTGGGAGAGAAACATG+GGG | - | chr8.2:58028198-58028217 | None:intergenic | 50.0% | |
AGCACGTCAGTTAGACGCAT+AGG | - | chr8.2:58028166-58028185 | None:intergenic | 50.0% | |
ATGTAGCCAGCCCAACTTGT+AGG | + | chr8.2:58028902-58028921 | MS.gene016408:intron | 50.0% | |
CAAAGGGTGGGAGAGAAACA+TGG | - | chr8.2:58028200-58028219 | None:intergenic | 50.0% | |
CAAGCAAGGAAGCCTGAGTA+TGG | - | chr8.2:58028708-58028727 | None:intergenic | 50.0% | |
CATCCATCATCTCCTTCACC+TGG | - | chr8.2:58029296-58029315 | None:intergenic | 50.0% | |
CATGTTTCTCTCCCACCCTT+TGG | + | chr8.2:58028198-58028217 | MS.gene016408:intron | 50.0% | |
CCTTCGGTGAATGCTTGAAG+GGG | - | chr8.2:58025987-58026006 | None:intergenic | 50.0% | |
CGTCAGTTAGACGCATAGGA+TGG | - | chr8.2:58028162-58028181 | None:intergenic | 50.0% | |
CTGGTTTATTGAGGGGAGGA+AGG | - | chr8.2:58028799-58028818 | None:intergenic | 50.0% | |
GAACCAAGCAAGGACATCAG+CGG | - | chr8.2:58026105-58026124 | None:intergenic | 50.0% | |
GAACCGCCGTTGAAAATGAG+TGG | + | chr8.2:58026042-58026061 | MS.gene016408:CDS | 50.0% | |
GAATTCGTGCTCCCATACTC+AGG | + | chr8.2:58028693-58028712 | MS.gene016408:intron | 50.0% | |
GAGAGGTGATTGAGGTGTGA+AGG | - | chr8.2:58028139-58028158 | None:intergenic | 50.0% | |
GAGGGAAAGCTGGTAGGAAA+TGG | - | chr8.2:58028109-58028128 | None:intergenic | 50.0% | |
GATGGTCTGTTGTCTCAAGG+AGG | + | chr8.2:58029312-58029331 | MS.gene016408:CDS | 50.0% | |
GGTGAGGATAATCCAGGTGA+AGG | + | chr8.2:58029281-58029300 | MS.gene016408:CDS | 50.0% | |
GGTTTATTGAGGGGAGGAAG+GGG | - | chr8.2:58028797-58028816 | None:intergenic | 50.0% | |
GTTTATAAGTGGCCGAGTGG+GGG | - | chr8.2:58026645-58026664 | None:intergenic | 50.0% | |
GTTTATTGAGGGGAGGAAGG+GGG | - | chr8.2:58028796-58028815 | None:intergenic | 50.0% | |
TAGGATGGGAGAGGTGATTG+AGG | - | chr8.2:58028147-58028166 | None:intergenic | 50.0% | |
TCACCTGGATTATCCTCACC+TGG | - | chr8.2:58029281-58029300 | None:intergenic | 50.0% | |
TCCCCTCACAAGTCACTTCT+AGG | + | chr8.2:58026710-58026729 | MS.gene016408:intron | 50.0% | |
TGCACACCAGAATAAGCAGC+TGG | - | chr8.2:58027446-58027465 | None:intergenic | 50.0% | |
TTAGACGCATAGGATGGGAG+AGG | - | chr8.2:58028156-58028175 | None:intergenic | 50.0% | |
TTTATAAGTGGCCGAGTGGG+GGG | - | chr8.2:58026644-58026663 | None:intergenic | 50.0% | |
! | AGCCCACTCATTTTCAACGG+CGG | - | chr8.2:58026048-58026067 | None:intergenic | 50.0% |
! | TCCTTTAAGCAAGGGTGCAC+CGG | - | chr8.2:58028617-58028636 | None:intergenic | 50.0% |
! | TGACGGAACTTGTTCCACTG+TGG | + | chr8.2:58028308-58028327 | MS.gene016408:intron | 50.0% |
!! | CAGGTGAAGGAGATGATGGA+TGG | + | chr8.2:58029294-58029313 | MS.gene016408:CDS | 50.0% |
!! | GCTAGAGGTGTTTGGCCAAA+GGG | - | chr8.2:58028216-58028235 | None:intergenic | 50.0% |
!! | GGTGGTCCTTGTAGCTTGTT+AGG | - | chr8.2:58025966-58025985 | None:intergenic | 50.0% |
!! | TGCTAGAGGTGTTTGGCCAA+AGG | - | chr8.2:58028217-58028236 | None:intergenic | 50.0% |
!!! | CAGGTTTTATTAGGCCGGGT+TGG | + | chr8.2:58028642-58028661 | MS.gene016408:intron | 50.0% |
ACGCGCACTTTCCCAAACTC+AGG | + | chr8.2:58028243-58028262 | MS.gene016408:intron | 55.0% | |
AGGAAGGTGGCTAGCAAGCA+AGG | - | chr8.2:58028722-58028741 | None:intergenic | 55.0% | |
AGGGTGGGAGAGAAACATGG+GGG | - | chr8.2:58028197-58028216 | None:intergenic | 55.0% | |
CCCCTTCAAGCATTCACCGA+AGG | + | chr8.2:58025984-58026003 | MS.gene016408:CDS | 55.0% | |
CCTGACAGCAAGTTGCCCAA+CGG | + | chr8.2:58026762-58026781 | MS.gene016408:intron | 55.0% | |
CTGGGGAGAATGTAGGAAGG+TGG | - | chr8.2:58028735-58028754 | None:intergenic | 55.0% | |
GCCGTTGAAAATGAGTGGGC+TGG | + | chr8.2:58026047-58026066 | MS.gene016408:CDS | 55.0% | |
TCAGCCGGAAAATCCAGGTG+AGG | + | chr8.2:58029265-58029284 | MS.gene016408:CDS | 55.0% | |
TCCGGTGCACCCTTGCTTAA+AGG | + | chr8.2:58028613-58028632 | MS.gene016408:intron | 55.0% | |
TCGGTGAATGCTTGAAGGGG+TGG | - | chr8.2:58025984-58026003 | None:intergenic | 55.0% | |
! | GAGGTGTTTGGCCAAAGGGT+GGG | - | chr8.2:58028212-58028231 | None:intergenic | 55.0% |
! | GGCAGTTAATGGGTCTCAGC+CGG | + | chr8.2:58029250-58029269 | MS.gene016408:CDS | 55.0% |
!! | AGAGGTGTTTGGCCAAAGGG+TGG | - | chr8.2:58028213-58028232 | None:intergenic | 55.0% |
CAAGGACATCAGCGGCGAGT+TGG | - | chr8.2:58026097-58026116 | None:intergenic | 60.0% | |
GGGTCTCAGCCGGAAAATCC+AGG | + | chr8.2:58029260-58029279 | MS.gene016408:CDS | 60.0% | |
GGGTGGGAGAGAAACATGGG+GGG | - | chr8.2:58028196-58028215 | None:intergenic | 60.0% | |
GTGCGCGTGAGAGATGCTAG+AGG | - | chr8.2:58028231-58028250 | None:intergenic | 60.0% | |
TCGCCGCTGATGTCCTTGCT+TGG | + | chr8.2:58026099-58026118 | MS.gene016408:CDS | 60.0% | |
TGAGGGGAGGAAGGGGGTAA+TGG | - | chr8.2:58028790-58028809 | None:intergenic | 60.0% | |
!! | CCGTTGGGCAACTTGCTGTC+AGG | - | chr8.2:58026765-58026784 | None:intergenic | 60.0% |
!! | CGGCGAGTTGGTGAGCTTTG+AGG | - | chr8.2:58026085-58026104 | None:intergenic | 60.0% |
GTGAGGACTGTCCCCCCACT+CGG | + | chr8.2:58026630-58026649 | MS.gene016408:intron | 65.0% | |
! | GGAGGAAGGGGGTAATGGCC+AGG | - | chr8.2:58028785-58028804 | None:intergenic | 65.0% |
!! | CGGTTCGGAGCGCCGACCAA+CGG | - | chr8.2:58026028-58026047 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 58025954 | 58029358 | 58025954 | ID=MS.gene016408 |
chr8.2 | mRNA | 58025954 | 58029358 | 58025954 | ID=MS.gene016408.t1;Parent=MS.gene016408 |
chr8.2 | exon | 58025954 | 58026137 | 58025954 | ID=MS.gene016408.t1.exon1;Parent=MS.gene016408.t1 |
chr8.2 | CDS | 58025954 | 58026137 | 58025954 | ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1 |
chr8.2 | exon | 58026247 | 58026335 | 58026247 | ID=MS.gene016408.t1.exon2;Parent=MS.gene016408.t1 |
chr8.2 | CDS | 58026247 | 58026335 | 58026247 | ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1 |
chr8.2 | exon | 58027356 | 58027469 | 58027356 | ID=MS.gene016408.t1.exon3;Parent=MS.gene016408.t1 |
chr8.2 | CDS | 58027356 | 58027469 | 58027356 | ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1 |
chr8.2 | exon | 58029131 | 58029358 | 58029131 | ID=MS.gene016408.t1.exon4;Parent=MS.gene016408.t1 |
chr8.2 | CDS | 58029131 | 58029358 | 58029131 | ID=cds.MS.gene016408.t1;Parent=MS.gene016408.t1 |
Gene Sequence |
Protein sequence |