Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016665.t1 | XP_013445072.1 | 99.8 | 464 | 1 | 0 | 7 | 470 | 34 | 497 | 6.20E-275 | 956.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016665.t1 | Q6DKP5 | 37.0 | 330 | 198 | 7 | 141 | 463 | 158 | 484 | 4.7e-53 | 210.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016665.t1 | A0A072TQH3 | 99.8 | 464 | 1 | 0 | 7 | 470 | 34 | 497 | 4.5e-275 | 956.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene016665 | MS.gene25914 | PPI |
MS.gene92768 | MS.gene016665 | PPI |
MS.gene016665 | MS.gene036937 | PPI |
MS.gene016665 | MS.gene51850 | PPI |
MS.gene022257 | MS.gene016665 | PPI |
MS.gene016665 | MS.gene074392 | PPI |
MS.gene016665 | MS.gene27507 | PPI |
MS.gene016665 | MS.gene70587 | PPI |
MS.gene016665 | MS.gene87680 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016665.t1 | MTR_8g037340 | 99.785 | 466 | 1 | 0 | 5 | 470 | 32 | 497 | 0.0 | 973 |
MS.gene016665.t1 | MTR_8g037340 | 93.750 | 496 | 1 | 1 | 5 | 470 | 32 | 527 | 0.0 | 958 |
MS.gene016665.t1 | MTR_1g072140 | 28.182 | 330 | 205 | 13 | 139 | 462 | 12 | 315 | 1.51e-25 | 107 |
MS.gene016665.t1 | MTR_4g119620 | 25.915 | 328 | 196 | 14 | 154 | 463 | 27 | 325 | 5.72e-19 | 88.2 |
MS.gene016665.t1 | MTR_4g123597 | 21.557 | 334 | 227 | 8 | 154 | 459 | 106 | 432 | 3.77e-12 | 69.3 |
MS.gene016665.t1 | MTR_2g079740 | 22.887 | 284 | 183 | 8 | 181 | 446 | 474 | 739 | 6.46e-11 | 65.1 |
MS.gene016665.t1 | MTR_8g092890 | 21.849 | 238 | 167 | 6 | 181 | 417 | 276 | 495 | 6.47e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016665.t1 | AT2G16405 | 75.108 | 462 | 110 | 4 | 5 | 465 | 24 | 481 | 0.0 | 725 |
MS.gene016665.t1 | AT3G49660 | 27.329 | 322 | 189 | 16 | 156 | 463 | 26 | 316 | 2.06e-21 | 95.1 |
MS.gene016665.t1 | AT4G02730 | 25.208 | 361 | 229 | 15 | 110 | 462 | 5 | 332 | 2.86e-17 | 83.2 |
MS.gene016665.t1 | AT5G54200 | 25.207 | 242 | 153 | 9 | 181 | 416 | 453 | 672 | 4.15e-12 | 68.9 |
MS.gene016665.t1 | AT5G53500 | 24.473 | 237 | 158 | 7 | 181 | 415 | 313 | 530 | 4.17e-12 | 68.9 |
MS.gene016665.t1 | AT5G53500 | 24.473 | 237 | 158 | 7 | 181 | 415 | 313 | 530 | 4.17e-12 | 68.9 |
Find 107 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCCTTCTTTCTCTTGAAAA+AGG | 0.184205 | 8.2:-62058127 | MS.gene016665:CDS |
GAGGTGGACAGCTGGAGTTC+TGG | 0.218453 | 8.2:-62062957 | MS.gene016665:CDS |
AGTTCTGACCTACTTGCTTA+TGG | 0.246804 | 8.2:-62061952 | MS.gene016665:CDS |
TGGATAAAACTGTGAGAGTA+TGG | 0.287100 | 8.2:-62060383 | MS.gene016665:CDS |
GTACATTGCTTCTGCTTCAT+TGG | 0.327705 | 8.2:-62060403 | MS.gene016665:CDS |
AATTGCATGCGGGTGATATA+TGG | 0.338828 | 8.2:-62060345 | MS.gene016665:CDS |
GTAGTTACGGTGATAAAGTT+TGG | 0.339409 | 8.2:-62061982 | MS.gene016665:intron |
AGGTGGACAGCTGGAGTTCT+GGG | 0.349940 | 8.2:-62062956 | MS.gene016665:CDS |
CCCGGAGTACTTCGAAGACT+TGG | 0.357960 | 8.2:+62063667 | None:intergenic |
GGCATATTACAGTGTGGCTT+TGG | 0.361902 | 8.2:-62058227 | MS.gene016665:intron |
ACATAAACAGGCCTAGGAAC+TGG | 0.364322 | 8.2:-62063708 | MS.gene016665:CDS |
AGAGTATGGGAGATAGAAAA+AGG | 0.367149 | 8.2:-62060369 | MS.gene016665:CDS |
TAGGCCTGTTTATGTAATTC+CGG | 0.374723 | 8.2:+62063716 | None:intergenic |
TGACGCCGAAGTTACCTCTA+TGG | 0.376140 | 8.2:-62058642 | MS.gene016665:CDS |
TCCAATCATAGAGCAAGTTT+TGG | 0.376757 | 8.2:-62062209 | MS.gene016665:CDS |
TTTACGGCATAGTAATTGTT+TGG | 0.377298 | 8.2:-62057707 | MS.gene016665:CDS |
AAATTCAGCAACCTGTTTCC+CGG | 0.380388 | 8.2:+62063649 | None:intergenic |
GTTCTGACCTACTTGCTTAT+GGG | 0.394653 | 8.2:-62061951 | MS.gene016665:CDS |
CAGTCACAACAGTGCAGTAT+AGG | 0.394700 | 8.2:-62058405 | MS.gene016665:CDS |
CCTAGGAACTGGGAAAGTTT+AGG | 0.402238 | 8.2:-62063697 | MS.gene016665:CDS |
TTGTTCACACATGTATGCTT+TGG | 0.408174 | 8.2:+62057876 | None:intergenic |
TTCGAAGTACTCCGGGAAAC+AGG | 0.408718 | 8.2:-62063660 | MS.gene016665:intron |
AATAACAACTTCCTTTCTGT+TGG | 0.412808 | 8.2:-62059389 | MS.gene016665:CDS |
AGTGTGGCTTTGGAGATAAA+AGG | 0.415343 | 8.2:-62058217 | MS.gene016665:CDS |
GCCAAAACTTGCTCTATGAT+TGG | 0.428070 | 8.2:+62062208 | None:intergenic |
CCGGAGTACTTCGAAGACTT+GGG | 0.432049 | 8.2:+62063668 | None:intergenic |
GGGTCATCGGTTTCCTGTGA+TGG | 0.438655 | 8.2:-62057775 | MS.gene016665:CDS |
AAGCAGGAGGCGACGAATGC+CGG | 0.439791 | 8.2:+62064718 | None:intergenic |
TAGTTACGGTGATAAAGTTT+GGG | 0.440842 | 8.2:-62061981 | MS.gene016665:CDS |
AGAAGACAGCAGAATAAGTC+TGG | 0.447786 | 8.2:+62064776 | None:intergenic |
TCTGATCGTCCACGAATTCG+TGG | 0.450477 | 8.2:-62062164 | MS.gene016665:CDS |
GACCAACGGGAGAGTGGACT+TGG | 0.450591 | 8.2:+62062981 | None:intergenic |
AAAATATGAGATGGCCAGTA+TGG | 0.452859 | 8.2:+62058612 | None:intergenic |
ATGCATTCCTACGAAGGAAT+AGG | 0.453630 | 8.2:+62062130 | None:intergenic |
CATACCGGAATTACATAAAC+AGG | 0.453670 | 8.2:-62063720 | MS.gene016665:CDS |
CCTAAACTTTCCCAGTTCCT+AGG | 0.455108 | 8.2:+62063697 | None:intergenic |
TTCCTGTGATGGGGATTGCT+TGG | 0.458213 | 8.2:-62057764 | MS.gene016665:CDS |
GGTCATCGGTTTCCTGTGAT+GGG | 0.461880 | 8.2:-62057774 | MS.gene016665:CDS |
GTTGGTCTGAGGTGGACAGC+TGG | 0.471148 | 8.2:-62062965 | MS.gene016665:CDS |
TTGTACTCACAGGGTGGAAA+CGG | 0.473001 | 8.2:+62060301 | None:intergenic |
TCTATGGACCACGACCATAC+TGG | 0.474694 | 8.2:-62058626 | MS.gene016665:CDS |
GCTGTCCACCTCAGACCAAC+GGG | 0.477029 | 8.2:+62062968 | None:intergenic |
TCAGTCATCAAACAATTAAA+CGG | 0.482319 | 8.2:-62061883 | MS.gene016665:CDS |
TTCGACCAGTGCAAAGCCTC+TGG | 0.486329 | 8.2:-62062101 | MS.gene016665:intron |
CGGGAGAGTGGACTTGGAGA+TGG | 0.503119 | 8.2:+62062987 | None:intergenic |
TGGATACTGAATTTGCAACT+TGG | 0.513649 | 8.2:+62062228 | None:intergenic |
CTATACTGCACTGTTGTGAC+TGG | 0.513927 | 8.2:+62058406 | None:intergenic |
TTTAATTGTTTGATGACTGA+AGG | 0.515062 | 8.2:+62061886 | None:intergenic |
CTTGCTTATGGGGCATCAGA+TGG | 0.516204 | 8.2:-62061940 | MS.gene016665:CDS |
TAGATTTCCATCCTGAGTAC+AGG | 0.521762 | 8.2:+62058345 | None:intergenic |
CCCAAGTCTTCGAAGTACTC+CGG | 0.525236 | 8.2:-62063668 | MS.gene016665:CDS |
GGAAAACTTACGTGGCATAC+CGG | 0.525881 | 8.2:-62063735 | MS.gene016665:CDS |
GAGCCTGCCTATTCCTTCGT+AGG | 0.527204 | 8.2:-62062137 | MS.gene016665:CDS |
CGACGAATGCCGGTGTACTC+AGG | 0.531207 | 8.2:+62064728 | None:intergenic |
ACTTCGATGACGATGTGAGC+GGG | 0.531444 | 8.2:+62058447 | None:intergenic |
CATAAACAGGCCTAGGAACT+GGG | 0.532543 | 8.2:-62063707 | MS.gene016665:CDS |
TGTTTGCATTTCCAACAGAA+AGG | 0.536794 | 8.2:+62059378 | None:intergenic |
TTCTGACCTACTTGCTTATG+GGG | 0.543681 | 8.2:-62061950 | MS.gene016665:CDS |
TACCTGTGATGTCTTTCGAA+TGG | 0.549760 | 8.2:+62061860 | None:intergenic |
AGCTGGAATTCTCCGCCGTA+AGG | 0.553349 | 8.2:-62064681 | MS.gene016665:intron |
TCCACTCTCCCGTTGGTCTG+AGG | 0.553452 | 8.2:-62062976 | MS.gene016665:CDS |
CTCCAAGTCCACTCTCCCGT+TGG | 0.556019 | 8.2:-62062983 | MS.gene016665:CDS |
ACTCTCCCGTTGGTCTGAGG+TGG | 0.557213 | 8.2:-62062973 | MS.gene016665:CDS |
GGCTCAACACCACGAATTCG+TGG | 0.557690 | 8.2:+62062155 | None:intergenic |
TGTGTTGTTGACCTGTACTC+AGG | 0.559101 | 8.2:-62058356 | MS.gene016665:CDS |
AGCTGTCCACCTCAGACCAA+CGG | 0.563191 | 8.2:+62062967 | None:intergenic |
TGAAGGATTGGAGATGCAAT+GGG | 0.565209 | 8.2:-62063756 | MS.gene016665:intron |
CCAAGTCTTCGAAGTACTCC+GGG | 0.573735 | 8.2:-62063667 | MS.gene016665:CDS |
CGGAGTACTTCGAAGACTTG+GGG | 0.573894 | 8.2:+62063669 | None:intergenic |
TTCCAAGCAATCCCCATCAC+AGG | 0.577118 | 8.2:+62057762 | None:intergenic |
TACATGTGTGAACAAGCTAC+AGG | 0.579845 | 8.2:-62057868 | MS.gene016665:intron |
TTGAAGGATTGGAGATGCAA+TGG | 0.580876 | 8.2:-62063757 | MS.gene016665:intron |
TCCATCACCATGGCGGAGCA+CGG | 0.582837 | 8.2:-62064908 | None:intergenic |
TACTACCAGAGGCTTTGCAC+TGG | 0.583440 | 8.2:+62062096 | None:intergenic |
ATGGGGATTGCTTGGAACCA+TGG | 0.583684 | 8.2:-62057756 | MS.gene016665:CDS |
TGAAACACTGCACACAGTCA+AGG | 0.586692 | 8.2:+62061915 | None:intergenic |
GGATAAAACTGTGAGAGTAT+GGG | 0.586995 | 8.2:-62060382 | MS.gene016665:CDS |
CTGATGCCCCATAAGCAAGT+AGG | 0.590315 | 8.2:+62061944 | None:intergenic |
GGATCAGCGTCGGAGGTGAG+AGG | 0.592584 | 8.2:+62064749 | None:intergenic |
TGAGATGGCCAGTATGGTCG+TGG | 0.593850 | 8.2:+62058618 | None:intergenic |
ACCTCAGACCAACGGGAGAG+TGG | 0.599253 | 8.2:+62062975 | None:intergenic |
GGACAGCTGGAGTTCTGGGA+GGG | 0.602771 | 8.2:-62062952 | MS.gene016665:intron |
CATCTCCACAAAATATGAGA+TGG | 0.602782 | 8.2:+62058603 | None:intergenic |
GCTCGCTCAAGTTAACTCCT+CGG | 0.603557 | 8.2:-62058177 | MS.gene016665:CDS |
GGAATTACATAAACAGGCCT+AGG | 0.605131 | 8.2:-62063714 | MS.gene016665:CDS |
GATGCAATGCATTCCTACGA+AGG | 0.607558 | 8.2:+62062124 | None:intergenic |
GCGGGATAATATACCTGTGT+GGG | 0.610158 | 8.2:+62058465 | None:intergenic |
TGAGTACAGGTCAACAACAC+AGG | 0.611720 | 8.2:+62058358 | None:intergenic |
ATTCCTACGAAGGAATAGGC+AGG | 0.617187 | 8.2:+62062134 | None:intergenic |
GTCATCGGTTTCCTGTGATG+GGG | 0.617591 | 8.2:-62057773 | MS.gene016665:CDS |
AGTATGGTCGTGGTCCATAG+AGG | 0.617688 | 8.2:+62058628 | None:intergenic |
TACTTCGATGACGATGTGAG+CGG | 0.618776 | 8.2:+62058446 | None:intergenic |
AGTTTCTCTCTGCTAGCTCG+AGG | 0.630037 | 8.2:-62058382 | MS.gene016665:CDS |
GTTGATGCATCAGTGGCCGA+TGG | 0.633147 | 8.2:-62063013 | MS.gene016665:intron |
GGTGTACTCAGGATCAGCGT+CGG | 0.640899 | 8.2:+62064739 | None:intergenic |
GTGGTCCATAGAGGTAACTT+CGG | 0.643822 | 8.2:+62058637 | None:intergenic |
TGGACAGCTGGAGTTCTGGG+AGG | 0.650084 | 8.2:-62062953 | MS.gene016665:CDS |
TTGTTGACCTGTACTCAGGA+TGG | 0.657122 | 8.2:-62058352 | MS.gene016665:CDS |
GTAAATATGAACTCCCACAC+AGG | 0.663031 | 8.2:-62058478 | MS.gene016665:CDS |
GGCCATTCGAAAGACATCAC+AGG | 0.665122 | 8.2:-62061862 | MS.gene016665:intron |
GTACTCAGGATCAGCGTCGG+AGG | 0.665749 | 8.2:+62064742 | None:intergenic |
ATATGCAGTTGCTGGAAGTG+AGG | 0.669433 | 8.2:-62057931 | MS.gene016665:intron |
GACTTGGAGATGGAAACCAT+CGG | 0.697706 | 8.2:+62062997 | None:intergenic |
AGCGGGATAATATACCTGTG+TGG | 0.702369 | 8.2:+62058464 | None:intergenic |
ATGCAATGGGAAAACTTACG+TGG | 0.711127 | 8.2:-62063743 | MS.gene016665:CDS |
GACGCTGATCCTGAGTACAC+CGG | 0.736062 | 8.2:-62064737 | MS.gene016665:CDS |
ATGCGGAGTATACCTTACGG+CGG | 0.798435 | 8.2:+62064669 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 62057671 | 62064921 | 62057671 | ID=MS.gene016665 |
chr8.2 | mRNA | 62057671 | 62064921 | 62057671 | ID=MS.gene016665.t1;Parent=MS.gene016665 |
chr8.2 | exon | 62064909 | 62064921 | 62064909 | ID=MS.gene016665.t1.exon1;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62064909 | 62064921 | 62064909 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62064682 | 62064800 | 62064682 | ID=MS.gene016665.t1.exon2;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62064682 | 62064800 | 62064682 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62063661 | 62063773 | 62063661 | ID=MS.gene016665.t1.exon3;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62063661 | 62063773 | 62063661 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62062953 | 62063022 | 62062953 | ID=MS.gene016665.t1.exon4;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62062953 | 62063022 | 62062953 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62062102 | 62062255 | 62062102 | ID=MS.gene016665.t1.exon5;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62062102 | 62062255 | 62062102 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62061863 | 62062000 | 62061863 | ID=MS.gene016665.t1.exon6;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62061863 | 62062000 | 62061863 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62060311 | 62060450 | 62060311 | ID=MS.gene016665.t1.exon7;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62060311 | 62060450 | 62060311 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62059367 | 62059414 | 62059367 | ID=MS.gene016665.t1.exon8;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62059367 | 62059414 | 62059367 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62058598 | 62058708 | 62058598 | ID=MS.gene016665.t1.exon9;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62058598 | 62058708 | 62058598 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62058334 | 62058515 | 62058334 | ID=MS.gene016665.t1.exon10;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62058334 | 62058515 | 62058334 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62058116 | 62058237 | 62058116 | ID=MS.gene016665.t1.exon11;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62058116 | 62058237 | 62058116 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62057869 | 62057945 | 62057869 | ID=MS.gene016665.t1.exon12;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62057869 | 62057945 | 62057869 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
chr8.2 | exon | 62057671 | 62057796 | 62057671 | ID=MS.gene016665.t1.exon13;Parent=MS.gene016665.t1 |
chr8.2 | CDS | 62057671 | 62057796 | 62057671 | ID=cds.MS.gene016665.t1;Parent=MS.gene016665.t1 |
Gene Sequence |
Protein sequence |