Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92768.t1 | XP_024626163.1 | 95.4 | 175 | 8 | 0 | 736 | 910 | 662 | 836 | 4.10E-81 | 313.2 |
| MS.gene92768.t1 | XP_024626163.1 | 96.3 | 27 | 1 | 0 | 324 | 350 | 316 | 342 | 6.90E-04 | 56.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92768.t1 | A0A072U0S8 | 95.4 | 173 | 8 | 0 | 738 | 910 | 739 | 911 | 3.3e-80 | 309.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene92768 | 0.828967 | 6.70E-55 | -1.69E-46 |
| MS.gene049501 | MS.gene92768 | 0.809022 | 2.32E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene92768 | 0.802985 | 4.33E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene92768 | 0.800223 | 1.59E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene92768 | 0.801045 | 1.08E-48 | -1.69E-46 |
| MS.gene051102 | MS.gene92768 | 0.809879 | 1.52E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene92768 | 0.818641 | 1.76E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene92768 | 0.802119 | 6.53E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene92768 | 0.813649 | 2.30E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene92768 | 0.805035 | 1.62E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene92768 | 0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene92768 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene92768 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene92768 | 0.826402 | 2.77E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene92768 | 0.805856 | 1.09E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene92768 | 0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene92768 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene92768 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene92768 | 0.807727 | 4.39E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene92768 | 0.800845 | 1.19E-48 | -1.69E-46 |
| MS.gene05462 | MS.gene92768 | 0.821383 | 4.16E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene92768 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene92768 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene92768 | 0.828759 | 7.52E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene92768 | 0.804264 | 2.35E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene92768 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene92768 | 0.807614 | 4.64E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene92768 | 0.818243 | 2.17E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene92768 | 0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene92768 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene92768 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene92768 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene92768 | 0.819878 | 9.22E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene92768 | 0.823767 | 1.16E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene92768 | 0.810213 | 1.29E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene92768 | 0.827799 | 1.28E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene92768 | 0.818879 | 1.56E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene92768 | 0.80136 | 9.34E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene92768 | 0.812622 | 3.86E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene92768 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene060310 | MS.gene92768 | 0.815468 | 9.10E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene92768 | 0.809271 | 2.05E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene92768 | 0.806724 | 7.16E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene92768 | 0.805975 | 1.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92768 | MS.gene060358 | PPI |
| MS.gene92768 | MS.gene041500 | PPI |
| MS.gene92768 | MS.gene70587 | PPI |
| MS.gene92768 | MS.gene95252 | PPI |
| MS.gene88572 | MS.gene92768 | PPI |
| MS.gene92768 | MS.gene016665 | PPI |
| MS.gene92768 | MS.gene074392 | PPI |
| MS.gene92768 | MS.gene049813 | PPI |
| MS.gene92768 | MS.gene29263 | PPI |
| MS.gene92768 | MS.gene002806 | PPI |
| MS.gene92768 | MS.gene067126 | PPI |
| MS.gene92768 | MS.gene033811 | PPI |
| MS.gene92768 | MS.gene75814 | PPI |
| MS.gene92768 | MS.gene00961 | PPI |
| MS.gene45751 | MS.gene92768 | PPI |
| MS.gene92768 | MS.gene004491 | PPI |
| MS.gene92768 | MS.gene036548 | PPI |
| MS.gene92768 | MS.gene25914 | PPI |
| MS.gene056171 | MS.gene92768 | PPI |
| MS.gene92768 | MS.gene007508 | PPI |
| MS.gene022257 | MS.gene92768 | PPI |
| MS.gene92768 | MS.gene22441 | PPI |
| MS.gene92768 | MS.gene91079 | PPI |
| MS.gene92768 | MS.gene97056 | PPI |
| MS.gene92768 | MS.gene20056 | PPI |
| MS.gene92768 | MS.gene007439 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92768.t1 | MTR_7g073700 | 86.718 | 911 | 77 | 4 | 22 | 910 | 23 | 911 | 0.0 | 1496 |
| MS.gene92768.t1 | MTR_7g073700 | 85.444 | 687 | 68 | 3 | 22 | 686 | 23 | 699 | 0.0 | 1121 |
| MS.gene92768.t1 | MTR_0279s0010 | 73.878 | 245 | 13 | 3 | 274 | 488 | 1 | 224 | 2.07e-109 | 337 |
| MS.gene92768.t1 | MTR_0279s0010 | 45.098 | 102 | 56 | 0 | 418 | 519 | 61 | 162 | 5.89e-16 | 78.6 |
| MS.gene92768.t1 | MTR_7g073690 | 45.364 | 302 | 95 | 5 | 120 | 419 | 27 | 260 | 9.78e-59 | 213 |
| MS.gene92768.t1 | MTR_7g073690 | 49.133 | 173 | 53 | 7 | 9 | 147 | 9 | 180 | 1.48e-15 | 81.6 |
| MS.gene92768.t1 | MTR_7g073690 | 54.955 | 111 | 29 | 1 | 328 | 438 | 5 | 94 | 1.25e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92768.t1 | AT2G38580 | 34.461 | 473 | 235 | 9 | 434 | 903 | 81 | 481 | 2.07e-54 | 197 |
| MS.gene92768.t1 | AT2G38580 | 34.426 | 244 | 153 | 1 | 370 | 613 | 80 | 316 | 3.21e-25 | 110 |
| MS.gene92768.t1 | AT2G38580 | 35.109 | 413 | 223 | 7 | 500 | 903 | 84 | 460 | 9.65e-48 | 177 |
| MS.gene92768.t1 | AT2G38580 | 31.967 | 244 | 138 | 3 | 370 | 613 | 80 | 295 | 1.92e-19 | 92.8 |
| MS.gene92768.t1 | AT2G38580 | 33.813 | 278 | 140 | 4 | 434 | 710 | 81 | 315 | 8.22e-26 | 110 |
| MS.gene92768.t1 | AT2G38580 | 34.568 | 243 | 152 | 1 | 371 | 613 | 81 | 316 | 3.80e-25 | 108 |
| MS.gene92768.t1 | AT2G38580 | 31.797 | 217 | 148 | 0 | 333 | 549 | 85 | 301 | 8.15e-19 | 89.4 |
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGTTCTTTCAATTTA+TGG | 0.026925 | 7.4:+31008155 | None:intergenic |
| TCTCCATCATCGGTAGAATT+TGG | 0.231677 | 7.4:+31009509 | None:intergenic |
| TCCAATCAGAGATTTGAATT+TGG | 0.251426 | 7.4:-31008892 | MS.gene92768:CDS |
| TGAAGAGACTATCAGAAAAT+TGG | 0.251720 | 7.4:-31007850 | MS.gene92768:CDS |
| GGATGAGCCCACTCAGCTTT+TGG | 0.255578 | 7.4:-31008967 | MS.gene92768:CDS |
| GGGTTGGAGAAACAGCTATT+AGG | 0.264030 | 7.4:-31009682 | MS.gene92768:CDS |
| TACTGGTGTTTGACGAGTTT+TGG | 0.271586 | 7.4:+31002461 | None:intergenic |
| TTCTAGCAAAAGATTATTCT+TGG | 0.296886 | 7.4:+31003565 | None:intergenic |
| TACAATTAGAAAGTTGAATA+AGG | 0.301635 | 7.4:-31007524 | MS.gene92768:CDS |
| TGCAATTGTCTCCTCTGCTT+TGG | 0.308218 | 7.4:+31007209 | None:intergenic |
| ATCAAACTTTCTGAAGTTAC+TGG | 0.312931 | 7.4:-31002832 | MS.gene92768:CDS |
| ACCAAATTCAAATCTCTGAT+TGG | 0.338746 | 7.4:+31008891 | None:intergenic |
| ATAACAGATGCTCCTCTTAT+CGG | 0.344203 | 7.4:-31002544 | MS.gene92768:CDS |
| ATAAGAGGAGCATCTGTTAT+TGG | 0.346996 | 7.4:+31002547 | None:intergenic |
| TTTCCCAGTCTCCGAAATAC+TGG | 0.347369 | 7.4:+31009622 | None:intergenic |
| ATGGATGATCTCTTCTGATA+TGG | 0.348137 | 7.4:+31008174 | None:intergenic |
| TCGATTGGGGATGGAGAAAT+AGG | 0.355686 | 7.4:-31009023 | MS.gene92768:CDS |
| ATAAGAATAATGTGGACATT+GGG | 0.355821 | 7.4:-31009703 | MS.gene92768:CDS |
| TCGATTCGGGGTGGTGAAAC+AGG | 0.357244 | 7.4:-31009596 | MS.gene92768:CDS |
| TGTGCCAGAGTTGGATTCAT+TGG | 0.369333 | 7.4:-31002743 | MS.gene92768:CDS |
| TCGATCATAGATGGAGAAAT+AGG | 0.373037 | 7.4:-31009209 | MS.gene92768:CDS |
| GGTTGGAGAAACAGCTATTA+GGG | 0.378482 | 7.4:-31009681 | MS.gene92768:CDS |
| GGATGAACATGCCAGTATTT+CGG | 0.379221 | 7.4:-31009633 | MS.gene92768:CDS |
| GAAAGTTTGATTTCCGTGTC+TGG | 0.384943 | 7.4:+31002844 | None:intergenic |
| GTATGTTAGTGGTGCTGATT+TGG | 0.393914 | 7.4:-31002488 | MS.gene92768:CDS |
| TCTGATAGTCTCTTCAGATA+TGG | 0.394533 | 7.4:+31007857 | None:intergenic |
| AGACGTAACCTCAGATGATT+CGG | 0.395676 | 7.4:+31002771 | None:intergenic |
| CCACTATTAAAATCAATTAC+TGG | 0.395817 | 7.4:+31002444 | None:intergenic |
| CTTACACATTCTTTACCATT+TGG | 0.399061 | 7.4:+31008786 | None:intergenic |
| CTGTAGATCTCTTGCATGCT+CGG | 0.402514 | 7.4:+31002678 | None:intergenic |
| AGAGCAGAAAGTATATATTC+TGG | 0.407699 | 7.4:-31006114 | MS.gene92768:CDS |
| AGACGGGCAAAGTACTAATA+TGG | 0.411053 | 7.4:-31008826 | MS.gene92768:CDS |
| TGCTGAAACCTCGGAAAGAC+TGG | 0.412522 | 7.4:+31009436 | None:intergenic |
| GGAAGCATCGGTATGCTACT+AGG | 0.416279 | 7.4:-31004161 | MS.gene92768:CDS |
| CAGAAAATTGGAAGAACAAA+AGG | 0.418589 | 7.4:-31007838 | MS.gene92768:CDS |
| TCATGTCAGAAGAGACAATC+AGG | 0.429236 | 7.4:-31008021 | MS.gene92768:CDS |
| TGATTGTCTACAGACTGGTT+TGG | 0.431463 | 7.4:-31005384 | MS.gene92768:intron |
| TATTACCTCTTTCTCACTAA+AGG | 0.431473 | 7.4:+31005499 | None:intergenic |
| ATCATATATGCAGGCTGGAT+TGG | 0.433044 | 7.4:-31006349 | MS.gene92768:intron |
| GAGTTCATTTGTTGAGAAAG+AGG | 0.433857 | 7.4:-31004951 | MS.gene92768:intron |
| AGCTTGGCAGGTGGCAGAGT+TGG | 0.433989 | 7.4:-31003594 | MS.gene92768:intron |
| GAGGTGTTGATAAATTCAAA+TGG | 0.435256 | 7.4:-31009131 | MS.gene92768:CDS |
| GCAGACTCCATTGGTTTAGC+AGG | 0.437307 | 7.4:+31008849 | None:intergenic |
| GATTTGAATTTGGTGAAAAG+TGG | 0.443291 | 7.4:-31008882 | MS.gene92768:CDS |
| ACAATTTCTTCAATATCATC+TGG | 0.449189 | 7.4:+31002649 | None:intergenic |
| TAGTACCTCTTTCTCACTAA+AGG | 0.451451 | 7.4:+31006076 | None:intergenic |
| GAACTTATTTCAAATCTGAA+TGG | 0.455223 | 7.4:-31004182 | MS.gene92768:CDS |
| GGATTCATTGGAAAAGACTT+TGG | 0.458328 | 7.4:-31002731 | MS.gene92768:CDS |
| TGCCCGTCTGCAGACTCCAT+TGG | 0.459031 | 7.4:+31008840 | None:intergenic |
| GGTATGGAGAAACTTCAATC+AGG | 0.459152 | 7.4:-31009109 | MS.gene92768:CDS |
| AATCGAACTTGTTGCAGTCT+CGG | 0.460860 | 7.4:+31009040 | None:intergenic |
| CATGCCAGTATTTCGGAGAC+TGG | 0.462395 | 7.4:-31009626 | MS.gene92768:CDS |
| ACGTACCAGGGATCAAAATC+TGG | 0.462880 | 7.4:-31009483 | MS.gene92768:CDS |
| GAGTTCCTTTAGTGAGAAAG+AGG | 0.463904 | 7.4:-31005504 | MS.gene92768:intron |
| GAGTTCCTTTAGTGAGAAAG+AGG | 0.463904 | 7.4:-31006081 | MS.gene92768:intron |
| TTGATAAATTCAAATGGGTA+TGG | 0.465870 | 7.4:-31009125 | MS.gene92768:CDS |
| TGATGGACAGGACCGCGCTT+CGG | 0.465891 | 7.4:-31003138 | MS.gene92768:intron |
| ATCTGAGGCTAATCTTTCTC+AGG | 0.466036 | 7.4:-31009243 | MS.gene92768:CDS |
| CGAAATGGAGCACCGATAAG+AGG | 0.468771 | 7.4:+31002532 | None:intergenic |
| TGCTAGAAAACCAGCAATTG+AGG | 0.469562 | 7.4:-31003550 | MS.gene92768:CDS |
| ACCATTTGGCAGATGTCCAT+TGG | 0.470084 | 7.4:+31008800 | None:intergenic |
| GACGTAACCTCAGATGATTC+GGG | 0.472635 | 7.4:+31002772 | None:intergenic |
| AGGTACCAGGGATCATAATC+TGG | 0.474292 | 7.4:-31009003 | MS.gene92768:CDS |
| AAAGGACATGCATGTGCAAA+AGG | 0.475045 | 7.4:-31007820 | MS.gene92768:CDS |
| GCAGTAAGTTCGATCATAGA+TGG | 0.475284 | 7.4:-31009218 | MS.gene92768:CDS |
| AGGTAACGAGGATCATAATC+TGG | 0.475294 | 7.4:-31009576 | MS.gene92768:CDS |
| AGACTGCAACAAGTTCGATT+GGG | 0.475968 | 7.4:-31009037 | MS.gene92768:CDS |
| ACAAATTCAGTCAAACCATC+AGG | 0.478329 | 7.4:+31002808 | None:intergenic |
| CAATATGTTATTGAATGAAA+AGG | 0.481744 | 7.4:-31006316 | MS.gene92768:intron |
| AGAAATTGTTCAAATTCCAC+TGG | 0.482307 | 7.4:-31002635 | MS.gene92768:CDS |
| GCTAGAAAACCAGCAATTGA+GGG | 0.485750 | 7.4:-31003549 | MS.gene92768:CDS |
| AATAAGAATAATGTGGACAT+TGG | 0.486760 | 7.4:-31009704 | MS.gene92768:CDS |
| TTTATTGATAATCTCTTCCA+TGG | 0.487138 | 7.4:+31006974 | None:intergenic |
| GTCTATATCTGTGCCAGAGT+TGG | 0.490672 | 7.4:-31002752 | MS.gene92768:CDS |
| TAGTAGCTCTTCCGCTTCAC+AGG | 0.491680 | 7.4:-31003483 | MS.gene92768:CDS |
| AGATGGAGGATGATAAGAAA+AGG | 0.492027 | 7.4:-31009757 | MS.gene92768:CDS |
| AACTCTGTTACTGAATGAAA+AGG | 0.496778 | 7.4:-31006530 | MS.gene92768:intron |
| GAGACTGCAACAAGTTCGAT+TGG | 0.499934 | 7.4:-31009038 | MS.gene92768:CDS |
| CGATTTGTTACTGAAAGAAA+AGG | 0.501109 | 7.4:-31005750 | MS.gene92768:intron |
| GTCATCATTCTCCACATCCT+TGG | 0.502822 | 7.4:+31002576 | None:intergenic |
| TAATATGCACATTCTGAAAG+AGG | 0.504205 | 7.4:-31007981 | MS.gene92768:intron |
| TCATATGCAGGCTGGGTTGG+CGG | 0.507817 | 7.4:-31006560 | MS.gene92768:intron |
| TCCAATGGACATCTGCCAAA+TGG | 0.508005 | 7.4:-31008801 | MS.gene92768:CDS |
| AGGTAGCAGAGGTCATAATC+TGG | 0.508209 | 7.4:-31009189 | MS.gene92768:CDS |
| ATGATGGAGAATCACGTACC+AGG | 0.508226 | 7.4:-31009496 | MS.gene92768:CDS |
| GTGCCAAATTCTACCGATGA+TGG | 0.509742 | 7.4:-31009512 | MS.gene92768:CDS |
| ATCAGCACCACTAACATACT+TGG | 0.520008 | 7.4:+31002492 | None:intergenic |
| AATAATGTGGACATTGGGGT+TGG | 0.521321 | 7.4:-31009698 | MS.gene92768:CDS |
| AGCAAAGTGTGACTGTGGAT+TGG | 0.521937 | 7.4:-31008932 | MS.gene92768:CDS |
| TGATATTCACATGCAGAAAG+AGG | 0.522084 | 7.4:-31007497 | MS.gene92768:intron |
| ATATCATATGCAGGCTGGGT+TGG | 0.523958 | 7.4:-31006563 | MS.gene92768:intron |
| CAATTGAGGGAAAATGTGTC+TGG | 0.524022 | 7.4:-31003536 | MS.gene92768:CDS |
| CCACATGCTATGTGTTGAGC+TGG | 0.524467 | 7.4:-31002872 | MS.gene92768:CDS |
| TTCACAGGATGCTTCTGCAA+AGG | 0.524514 | 7.4:-31003468 | MS.gene92768:intron |
| AGGTGTTGATAAATTCAAAT+GGG | 0.525212 | 7.4:-31009130 | MS.gene92768:CDS |
| TGATAAACACATTCATAAAG+AGG | 0.525919 | 7.4:-31007169 | MS.gene92768:intron |
| TAATCTGGTAAATGATGCTA+AGG | 0.527851 | 7.4:-31009174 | MS.gene92768:CDS |
| TAATTCGCTGACTAATGCTA+AGG | 0.530185 | 7.4:-31009282 | MS.gene92768:CDS |
| AATCGAATTTGCTGAAACCT+CGG | 0.532415 | 7.4:+31009427 | None:intergenic |
| AAATCTATTGAGTAATGGTA+AGG | 0.535499 | 7.4:-31009375 | MS.gene92768:CDS |
| TTGATTGTGGATGGAGAACC+TGG | 0.535899 | 7.4:-31009317 | MS.gene92768:CDS |
| GAATTATGATCCACGGTACC+AGG | 0.537112 | 7.4:+31009299 | None:intergenic |
| GGTGAGTAATGGTAAGGATG+TGG | 0.539295 | 7.4:-31009462 | MS.gene92768:CDS |
| TGATATGCATGTCAAGAAAG+AGG | 0.539465 | 7.4:-31007654 | MS.gene92768:intron |
| TCAGATGATTCGGGTTCAGA+TGG | 0.541087 | 7.4:+31002781 | None:intergenic |
| GCGGAAAATTTGATTGTGGA+TGG | 0.541112 | 7.4:-31009326 | MS.gene92768:CDS |
| ATATCATATGCAGGCTGGAT+CGG | 0.541977 | 7.4:-31005783 | MS.gene92768:intron |
| GAATTTGATGAGTAATGGTA+AGG | 0.545570 | 7.4:-31009654 | MS.gene92768:CDS |
| GATCAGAATTTGATGAGTAA+TGG | 0.545882 | 7.4:-31009659 | MS.gene92768:CDS |
| CATCGGTATGCTACTAGGGC+AGG | 0.546754 | 7.4:-31004156 | MS.gene92768:intron |
| CTATTGAGTAATGGTAAGGA+TGG | 0.549172 | 7.4:-31009371 | MS.gene92768:CDS |
| TCAGCAAATTCGATTGTGCA+TGG | 0.550548 | 7.4:-31009419 | MS.gene92768:CDS |
| TGCTATTCTTTCTGAGACTG+CGG | 0.550826 | 7.4:-31009345 | MS.gene92768:CDS |
| AAATGCTGAACTTGTTGAGA+AGG | 0.553493 | 7.4:-31003051 | MS.gene92768:intron |
| GATCAAAATCTGGTGAGTAA+TGG | 0.553981 | 7.4:-31009473 | MS.gene92768:CDS |
| TAAGAATAATGTGGACATTG+GGG | 0.557410 | 7.4:-31009702 | MS.gene92768:CDS |
| GACTGGTTTGGAAATGAGAA+TGG | 0.557442 | 7.4:-31005372 | MS.gene92768:CDS |
| GAGGATCATAATCTGGTGAA+TGG | 0.558024 | 7.4:-31009569 | MS.gene92768:CDS |
| AAATCTGGTGAGTAATGGTA+AGG | 0.559126 | 7.4:-31009468 | MS.gene92768:CDS |
| TGCATGGAGAGACAGACGCC+AGG | 0.562553 | 7.4:-31009403 | MS.gene92768:CDS |
| GATCAAAATCTATTGAGTAA+TGG | 0.566914 | 7.4:-31009380 | MS.gene92768:CDS |
| TCTGAAGTTACTGGACCTGA+TGG | 0.568507 | 7.4:-31002823 | MS.gene92768:CDS |
| GTTGAAATCTCAAATTGAAG+AGG | 0.568858 | 7.4:-31003105 | MS.gene92768:CDS |
| AATTTGGTGAAAAGTGGAGA+GGG | 0.570370 | 7.4:-31008876 | MS.gene92768:CDS |
| GAAGCATCGGTATGCTACTA+GGG | 0.570602 | 7.4:-31004160 | MS.gene92768:CDS |
| GCTGCAAGATACCAAGGATG+TGG | 0.572220 | 7.4:-31002587 | MS.gene92768:CDS |
| TGAAGAGGCCTATATGTTGG+TGG | 0.573226 | 7.4:-31003090 | MS.gene92768:CDS |
| AAACCAATGGAGTCTGCAGA+CGG | 0.577286 | 7.4:-31008843 | MS.gene92768:CDS |
| GTTGTCCCCAAAAGCTGAGT+GGG | 0.578605 | 7.4:+31008960 | None:intergenic |
| GCAACAAGTTCGATTGGGGA+TGG | 0.578685 | 7.4:-31009032 | MS.gene92768:CDS |
| GGTACGTGATTCTCCATCAT+CGG | 0.579763 | 7.4:+31009499 | None:intergenic |
| AATTGAAGAGGCCTATATGT+TGG | 0.580345 | 7.4:-31003093 | MS.gene92768:CDS |
| TGCAGAAGCATCCTGTGAAG+CGG | 0.580794 | 7.4:+31003472 | None:intergenic |
| CGAATTGCAGAAACAAAAGC+AGG | 0.583101 | 7.4:-31006937 | MS.gene92768:intron |
| TGCTATGCTTATTCAGAGAG+AGG | 0.586263 | 7.4:-31008285 | MS.gene92768:intron |
| GGTAGAATTTGGCACAGCCT+CGG | 0.586350 | 7.4:+31009520 | None:intergenic |
| AGTACTAATATGGATTCCAA+TGG | 0.586406 | 7.4:-31008816 | MS.gene92768:CDS |
| GATGGAGAAATAGGTAGCAG+AGG | 0.587501 | 7.4:-31009200 | MS.gene92768:CDS |
| AACCAATGGAGTCTGCAGAC+GGG | 0.588089 | 7.4:-31008842 | MS.gene92768:CDS |
| GGGATGGAGAAATAGGTACC+AGG | 0.589879 | 7.4:-31009016 | MS.gene92768:CDS |
| AGAGCAAAATATAATTCATG+TGG | 0.591847 | 7.4:-31004984 | MS.gene92768:CDS |
| TCAAATCTGAATGGAAGCAT+CGG | 0.592323 | 7.4:-31004173 | MS.gene92768:CDS |
| AATTCGCTGACTAATGCTAA+GGG | 0.592467 | 7.4:-31009281 | MS.gene92768:CDS |
| ATTCACCAGATTATGATCCC+TGG | 0.592931 | 7.4:+31008998 | None:intergenic |
| GGGCGAGCCTGCTAAACCAA+TGG | 0.593045 | 7.4:-31008856 | MS.gene92768:CDS |
| TGTGGATGCCAGTCTTTCCG+AGG | 0.599629 | 7.4:-31009444 | MS.gene92768:CDS |
| ATGCCAGTATTTCGGAGACT+GGG | 0.604090 | 7.4:-31009625 | MS.gene92768:CDS |
| GACTGCAACAAGTTCGATTG+GGG | 0.609326 | 7.4:-31009036 | MS.gene92768:CDS |
| TAATCTGGTGAATGATGCTA+AGG | 0.615271 | 7.4:-31008988 | MS.gene92768:CDS |
| CAAGCAAAATAAGAATAATG+TGG | 0.615458 | 7.4:-31009711 | MS.gene92768:CDS |
| GAATTTGGTGAAAAGTGGAG+AGG | 0.618401 | 7.4:-31008877 | MS.gene92768:CDS |
| TATTGAGTAATGGTAAGGAT+GGG | 0.620381 | 7.4:-31009370 | MS.gene92768:CDS |
| GTATGGAGAAACTTCAATCA+GGG | 0.623861 | 7.4:-31009108 | MS.gene92768:CDS |
| TGAGCTGGATCGACCAGACA+CGG | 0.625329 | 7.4:-31002857 | MS.gene92768:CDS |
| TAATCTGGTGAATGGTGCTA+AGG | 0.626795 | 7.4:-31009561 | MS.gene92768:CDS |
| TGAACAAGTTAATCTATCTG+AGG | 0.630206 | 7.4:-31009258 | MS.gene92768:CDS |
| ATCTGAACCCGAATCATCTG+AGG | 0.631659 | 7.4:-31002779 | MS.gene92768:CDS |
| GACTGCGGAAAATTTGATTG+TGG | 0.631761 | 7.4:-31009330 | MS.gene92768:CDS |
| ATTGTGCAATTCTCACCTCT+AGG | 0.633576 | 7.4:+31006711 | None:intergenic |
| CGTTATGCAGGCCAAAGCAG+AGG | 0.634069 | 7.4:-31007220 | MS.gene92768:intron |
| GCATGCAAGAGATCTACAGC+TGG | 0.634109 | 7.4:-31002674 | MS.gene92768:CDS |
| TGTGGATTGGAATGGAGATG+TGG | 0.635509 | 7.4:-31008919 | MS.gene92768:CDS |
| GGACATGCATGTGCAAAAGG+AGG | 0.637104 | 7.4:-31007817 | MS.gene92768:intron |
| TCATATGCAGGCTGGATCGG+AGG | 0.639713 | 7.4:-31005780 | MS.gene92768:intron |
| ACATCCTTGGTATCTTGCAG+CGG | 0.643472 | 7.4:+31002589 | None:intergenic |
| TGATGGAGAATCACGTACCA+GGG | 0.645104 | 7.4:-31009495 | MS.gene92768:CDS |
| TGAGCAAGTTAGTATTTCCG+AGG | 0.645219 | 7.4:-31009537 | MS.gene92768:CDS |
| CTTACATCATTATCGTCCAG+TGG | 0.648207 | 7.4:+31002619 | None:intergenic |
| TTCTCTGCAGACTGACCTAG+AGG | 0.651031 | 7.4:-31006726 | MS.gene92768:intron |
| GCATGGAGAGACAGACGCCA+GGG | 0.652193 | 7.4:-31009402 | MS.gene92768:CDS |
| GGATGGAGAACCTGGTACCG+TGG | 0.656111 | 7.4:-31009309 | MS.gene92768:CDS |
| AGTCAGCGAATTATGATCCA+CGG | 0.659307 | 7.4:+31009292 | None:intergenic |
| CCAGCTCAACACATAGCATG+TGG | 0.661927 | 7.4:+31002872 | None:intergenic |
| AGTGTGACTGTGGATTGGAA+TGG | 0.662406 | 7.4:-31008927 | MS.gene92768:CDS |
| AGTTGTCCCCAAAAGCTGAG+TGG | 0.672502 | 7.4:+31008959 | None:intergenic |
| TGATAAGCAAAGTGTGACTG+TGG | 0.674123 | 7.4:-31008937 | MS.gene92768:CDS |
| TGATACACACATTCGTAACG+AGG | 0.676314 | 7.4:-31008134 | MS.gene92768:intron |
| TCTACCGCTGCAAGATACCA+AGG | 0.685957 | 7.4:-31002593 | MS.gene92768:CDS |
| GGATGGAGAAATAGGTACCA+GGG | 0.686635 | 7.4:-31009015 | MS.gene92768:CDS |
| GGGTGGTGAAACAGGTAACG+AGG | 0.711020 | 7.4:-31009588 | MS.gene92768:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 31002456 | 31009777 | 31002456 | ID=MS.gene92768 |
| chr7.4 | mRNA | 31002456 | 31009777 | 31002456 | ID=MS.gene92768.t1;Parent=MS.gene92768 |
| chr7.4 | exon | 31008791 | 31009777 | 31008791 | ID=MS.gene92768.t1.exon1;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31008791 | 31009777 | 31008791 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31008286 | 31008348 | 31008286 | ID=MS.gene92768.t1.exon2;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31008286 | 31008348 | 31008286 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31008135 | 31008197 | 31008135 | ID=MS.gene92768.t1.exon3;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31008135 | 31008197 | 31008135 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31007982 | 31008044 | 31007982 | ID=MS.gene92768.t1.exon4;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31007982 | 31008044 | 31007982 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31007818 | 31007880 | 31007818 | ID=MS.gene92768.t1.exon5;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31007818 | 31007880 | 31007818 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31007655 | 31007717 | 31007655 | ID=MS.gene92768.t1.exon6;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31007655 | 31007717 | 31007655 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31007498 | 31007560 | 31007498 | ID=MS.gene92768.t1.exon7;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31007498 | 31007560 | 31007498 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31007170 | 31007232 | 31007170 | ID=MS.gene92768.t1.exon8;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31007170 | 31007232 | 31007170 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31006938 | 31007000 | 31006938 | ID=MS.gene92768.t1.exon9;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31006938 | 31007000 | 31006938 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31006676 | 31006738 | 31006676 | ID=MS.gene92768.t1.exon10;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31006676 | 31006738 | 31006676 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31006531 | 31006572 | 31006531 | ID=MS.gene92768.t1.exon11;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31006531 | 31006572 | 31006531 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31006317 | 31006358 | 31006317 | ID=MS.gene92768.t1.exon12;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31006317 | 31006358 | 31006317 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31006082 | 31006144 | 31006082 | ID=MS.gene92768.t1.exon13;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31006082 | 31006144 | 31006082 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31005751 | 31005792 | 31005751 | ID=MS.gene92768.t1.exon14;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31005751 | 31005792 | 31005751 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31005505 | 31005567 | 31005505 | ID=MS.gene92768.t1.exon15;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31005505 | 31005567 | 31005505 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31005331 | 31005393 | 31005331 | ID=MS.gene92768.t1.exon16;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31005331 | 31005393 | 31005331 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31005167 | 31005229 | 31005167 | ID=MS.gene92768.t1.exon17;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31005167 | 31005229 | 31005167 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31004952 | 31005014 | 31004952 | ID=MS.gene92768.t1.exon18;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31004952 | 31005014 | 31004952 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31004157 | 31004216 | 31004157 | ID=MS.gene92768.t1.exon19;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31004157 | 31004216 | 31004157 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31003469 | 31003606 | 31003469 | ID=MS.gene92768.t1.exon20;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31003469 | 31003606 | 31003469 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31003052 | 31003150 | 31003052 | ID=MS.gene92768.t1.exon21;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31003052 | 31003150 | 31003052 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| chr7.4 | exon | 31002456 | 31002896 | 31002456 | ID=MS.gene92768.t1.exon22;Parent=MS.gene92768.t1 |
| chr7.4 | CDS | 31002456 | 31002896 | 31002456 | ID=cds.MS.gene92768.t1;Parent=MS.gene92768.t1 |
| Gene Sequence |
| Protein sequence |
