Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27507.t1 | XP_024626163.1 | 97.1 | 175 | 5 | 0 | 716 | 890 | 662 | 836 | 5.60E-83 | 319.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27507.t1 | A0A072U0S8 | 97.1 | 173 | 5 | 0 | 718 | 890 | 739 | 911 | 5.8e-82 | 315.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052856 | MS.gene27507 | 0.812802 | 3.53E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene27507 | 0.801796 | 7.60E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene27507 | 0.808995 | 2.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27507 | MS.gene049813 | PPI |
| MS.gene88572 | MS.gene27507 | PPI |
| MS.gene27507 | MS.gene29263 | PPI |
| MS.gene27507 | MS.gene067126 | PPI |
| MS.gene20056 | MS.gene27507 | PPI |
| MS.gene27507 | MS.gene75814 | PPI |
| MS.gene004491 | MS.gene27507 | PPI |
| MS.gene27507 | MS.gene00961 | PPI |
| MS.gene27507 | MS.gene22441 | PPI |
| MS.gene27507 | MS.gene25914 | PPI |
| MS.gene45751 | MS.gene27507 | PPI |
| MS.gene036548 | MS.gene27507 | PPI |
| MS.gene056171 | MS.gene27507 | PPI |
| MS.gene27507 | MS.gene91079 | PPI |
| MS.gene27507 | MS.gene97056 | PPI |
| MS.gene022257 | MS.gene27507 | PPI |
| MS.gene041500 | MS.gene27507 | PPI |
| MS.gene007439 | MS.gene27507 | PPI |
| MS.gene27507 | MS.gene074392 | PPI |
| MS.gene27507 | MS.gene060358 | PPI |
| MS.gene016665 | MS.gene27507 | PPI |
| MS.gene002806 | MS.gene27507 | PPI |
| MS.gene27507 | MS.gene033811 | PPI |
| MS.gene27507 | MS.gene70587 | PPI |
| MS.gene27507 | MS.gene95252 | PPI |
| MS.gene007508 | MS.gene27507 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27507.t1 | MTR_7g073700 | 85.746 | 912 | 64 | 6 | 22 | 890 | 23 | 911 | 0.0 | 1466 |
| MS.gene27507.t1 | MTR_7g073700 | 83.721 | 688 | 58 | 5 | 22 | 666 | 23 | 699 | 0.0 | 1084 |
| MS.gene27507.t1 | MTR_0279s0010 | 77.232 | 224 | 21 | 2 | 275 | 468 | 1 | 224 | 4.39e-104 | 322 |
| MS.gene27507.t1 | MTR_7g073690 | 43.144 | 299 | 102 | 4 | 121 | 418 | 27 | 258 | 3.41e-53 | 196 |
| MS.gene27507.t1 | MTR_7g073690 | 53.472 | 144 | 57 | 4 | 9 | 149 | 9 | 145 | 2.04e-18 | 90.5 |
| MS.gene27507.t1 | MTR_7g073690 | 56.322 | 87 | 38 | 0 | 332 | 418 | 8 | 94 | 4.00e-18 | 88.6 |
| MS.gene27507.t1 | MTR_7g073690 | 46.512 | 86 | 46 | 0 | 367 | 452 | 1 | 86 | 1.34e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27507.t1 | AT2G38580 | 34.884 | 473 | 233 | 9 | 414 | 883 | 81 | 481 | 1.01e-54 | 197 |
| MS.gene27507.t1 | AT2G38580 | 32.765 | 293 | 171 | 4 | 352 | 625 | 82 | 367 | 7.58e-25 | 109 |
| MS.gene27507.t1 | AT2G38580 | 34.505 | 455 | 209 | 11 | 439 | 883 | 85 | 460 | 1.82e-50 | 185 |
| MS.gene27507.t1 | AT2G38580 | 31.868 | 273 | 160 | 4 | 372 | 625 | 81 | 346 | 1.24e-21 | 99.8 |
| MS.gene27507.t1 | AT2G38580 | 34.532 | 278 | 138 | 4 | 414 | 690 | 81 | 315 | 3.26e-26 | 111 |
| MS.gene27507.t1 | AT2G38580 | 34.711 | 242 | 151 | 1 | 352 | 593 | 82 | 316 | 3.04e-24 | 105 |
| MS.gene27507.t1 | AT2G38580 | 30.634 | 284 | 148 | 3 | 372 | 655 | 81 | 315 | 1.44e-19 | 91.3 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTTCTTTCAATTTA+TGG | 0.016395 | 7.2:+31063517 | None:intergenic |
| TCTACATCCTCGGTAGAATT+TGG | 0.200816 | 7.2:+31064922 | None:intergenic |
| ATAACAGATGCTCCTCTTAT+TGG | 0.210076 | 7.2:-31058057 | MS.gene27507:CDS |
| ATTGATACACACATTCTTAA+AGG | 0.234017 | 7.2:-31063498 | MS.gene27507:CDS |
| TCCAATCAGAGATTTGAATT+TGG | 0.251426 | 7.2:-31064305 | MS.gene27507:CDS |
| TGAAGAGACTATCAGAAAAT+TGG | 0.251720 | 7.2:-31063240 | MS.gene27507:CDS |
| GGATGAGCCCACTCAGCTTT+TGG | 0.255578 | 7.2:-31064380 | MS.gene27507:CDS |
| GGGTTGGAGAAACAGCTATT+AGG | 0.264030 | 7.2:-31065098 | MS.gene27507:CDS |
| TACTGGTGTTTGAGGAGTTT+TGG | 0.270706 | 7.2:+31057974 | None:intergenic |
| TTCTAGCAAAAGATTATTCT+TGG | 0.296886 | 7.2:+31059077 | None:intergenic |
| TACAATTAGAAAGTTGAATA+AGG | 0.301635 | 7.2:-31062922 | MS.gene27507:CDS |
| TCGATTGGGAATGGAGAAAT+AGG | 0.304938 | 7.2:-31064436 | MS.gene27507:CDS |
| TGCAATTGTCTCCTCTGCTT+TGG | 0.308218 | 7.2:+31062631 | None:intergenic |
| ATCAAACTTTCTGAAGTTAC+TGG | 0.312931 | 7.2:-31058345 | MS.gene27507:CDS |
| ATAAGAGGAGCATCTGTTAT+TGG | 0.337358 | 7.2:+31058060 | None:intergenic |
| TTGATACACACATTCTTAAA+GGG | 0.337497 | 7.2:-31063497 | MS.gene27507:CDS |
| ACCAAATTCAAATCTCTGAT+TGG | 0.338746 | 7.2:+31064304 | None:intergenic |
| TCGATCGTAGATGGAGAAAT+AGG | 0.338974 | 7.2:-31064622 | MS.gene27507:CDS |
| AGAGCAGAAAGTAAATATTC+TGG | 0.339054 | 7.2:-31061567 | MS.gene27507:CDS |
| TTTCACAGTCTCCGAAATAC+TGG | 0.347240 | 7.2:+31065038 | None:intergenic |
| ATAAGAATAATGTGGACATT+GGG | 0.355821 | 7.2:-31065119 | MS.gene27507:CDS |
| TCAATTCGGGGTGGTGAAAC+AGG | 0.357244 | 7.2:-31065012 | MS.gene27507:CDS |
| TTCTCTGCAGACTGATTTAG+AGG | 0.364239 | 7.2:-31062176 | MS.gene27507:intron |
| ATGGATGGTCTCTTCTGATA+TGG | 0.364593 | 7.2:+31063536 | None:intergenic |
| GCAGAAAATTCGATTGTTGA+TGG | 0.376506 | 7.2:-31064739 | MS.gene27507:CDS |
| GGTTGGAGAAACAGCTATTA+GGG | 0.378482 | 7.2:-31065097 | MS.gene27507:CDS |
| GGATGAACATGCCAGTATTT+CGG | 0.379221 | 7.2:-31065049 | MS.gene27507:CDS |
| GTATGTTAGTGGTGCTGATT+TGG | 0.380648 | 7.2:-31058001 | MS.gene27507:CDS |
| AGATGTAACCTCAGATGATT+CGG | 0.381160 | 7.2:+31058284 | None:intergenic |
| GAGGTGTTGGTAAATTCAAA+TGG | 0.382323 | 7.2:-31064544 | MS.gene27507:CDS |
| CCACTATTAAAATCAATTAC+TGG | 0.382433 | 7.2:+31057957 | None:intergenic |
| CGACGGGCAAAGTACTAATA+TGG | 0.384700 | 7.2:-31064239 | MS.gene27507:CDS |
| GAAAGTTTGATTTCCGTGTC+TGG | 0.384943 | 7.2:+31058357 | None:intergenic |
| GATCAAAATCTAATGAATAA+TGG | 0.387784 | 7.2:-31064793 | MS.gene27507:CDS |
| TGTGCCGGAGTTGGATTCAT+TGG | 0.393324 | 7.2:-31058256 | MS.gene27507:CDS |
| TCTGATAGTCTCTTCAGATA+TGG | 0.394533 | 7.2:+31063247 | None:intergenic |
| CTGTAGATCTCTTGCATGCT+CGG | 0.402514 | 7.2:+31058191 | None:intergenic |
| TTCCGAGGCTAATCTTTGTC+AGG | 0.410079 | 7.2:-31064656 | MS.gene27507:CDS |
| CTTACACATTCTATACCATT+TGG | 0.412540 | 7.2:+31064199 | None:intergenic |
| TCGATTGTTGATGGAGCATC+TGG | 0.416024 | 7.2:-31064730 | MS.gene27507:CDS |
| CAGAAAATTGGAAGAACAAA+AGG | 0.418589 | 7.2:-31063228 | MS.gene27507:CDS |
| TACTACCTCTTTCTCACTAA+AGG | 0.422292 | 7.2:+31061529 | None:intergenic |
| AAATCAATTACTGGTGTTTG+AGG | 0.428663 | 7.2:+31057966 | None:intergenic |
| TCATGTCAGAAGAGACAATC+AGG | 0.429236 | 7.2:-31063383 | MS.gene27507:CDS |
| AGGTACCTGGGATCAGAATC+TGG | 0.432961 | 7.2:-31064416 | MS.gene27507:CDS |
| GAGTTCATTTGTTGAGAAAG+AGG | 0.433857 | 7.2:-31060417 | MS.gene27507:intron |
| AGCTTGGCAGGTGGCAGAGT+TGG | 0.433989 | 7.2:-31059106 | MS.gene27507:intron |
| TGCCCGTCGGCCGACTCCAT+TGG | 0.436152 | 7.2:+31064253 | None:intergenic |
| GGGGTGGTGAAACAGGTAAC+GGG | 0.437119 | 7.2:-31065005 | MS.gene27507:CDS |
| ACGTACCAGGGATCAGAATC+TGG | 0.438640 | 7.2:-31064896 | MS.gene27507:CDS |
| GATTTGAATTTGGTGAAAAG+TGG | 0.443291 | 7.2:-31064295 | MS.gene27507:CDS |
| TGTTACCTCTTTCTCACTAA+AGG | 0.443854 | 7.2:+31060965 | None:intergenic |
| ATCTATATCTGTGCCGGAGT+TGG | 0.444756 | 7.2:-31058265 | MS.gene27507:CDS |
| ACAATTTCTTCAATATCATC+TGG | 0.449189 | 7.2:+31058162 | None:intergenic |
| GCCGACTCCATTGGTTGAGC+AGG | 0.449473 | 7.2:+31064262 | None:intergenic |
| GCAGTAAGTTCGATCGTAGA+TGG | 0.452676 | 7.2:-31064631 | MS.gene27507:CDS |
| GAACTTATTTCAAATCTGAA+TGG | 0.455223 | 7.2:-31059680 | MS.gene27507:CDS |
| GGATTCATTGGAAAAGACTT+TGG | 0.455291 | 7.2:-31058244 | MS.gene27507:CDS |
| TCCATGCACAATCGAATTTG+CGG | 0.455431 | 7.2:+31064831 | None:intergenic |
| ACCATTTGGCAGATGTCCAT+TGG | 0.457360 | 7.2:+31064213 | None:intergenic |
| GAGTTCCTTTAGTGAGAAAG+AGG | 0.458579 | 7.2:-31061534 | MS.gene27507:intron |
| AGTTAATCTTTCTGAGGTGT+TGG | 0.461282 | 7.2:-31064557 | MS.gene27507:CDS |
| GATGTAACCTCAGATGATTC+GGG | 0.461463 | 7.2:+31058285 | None:intergenic |
| GAGTTCCTTTAGTGAGAAAG+AGG | 0.463904 | 7.2:-31060970 | MS.gene27507:intron |
| TGATGGACAGGACCGCGCTT+CGG | 0.465891 | 7.2:-31058650 | MS.gene27507:intron |
| TGCTAGAAAACCAGCAATTG+AGG | 0.469562 | 7.2:-31059062 | MS.gene27507:CDS |
| AAAGGACATGCATGTGCAAA+AGG | 0.475045 | 7.2:-31063210 | MS.gene27507:CDS |
| AGAAATTGTTCAAATTCCAC+TGG | 0.475276 | 7.2:-31058148 | MS.gene27507:CDS |
| ACAAATTCAGTCAAACCATC+AGG | 0.478329 | 7.2:+31058321 | None:intergenic |
| AGGTAACGGGGATCATAATC+TGG | 0.480820 | 7.2:-31064992 | MS.gene27507:CDS |
| AGGTAACAGAGGTCATAATC+TGG | 0.481534 | 7.2:-31064602 | MS.gene27507:CDS |
| CAATATGTTATTGAATGAAA+AGG | 0.481744 | 7.2:-31061768 | MS.gene27507:intron |
| AATCGAATTTGTCGCAGTCT+CGG | 0.484689 | 7.2:+31064453 | None:intergenic |
| GCTAGAAAACCAGCAATTGA+GGG | 0.485750 | 7.2:-31059061 | MS.gene27507:CDS |
| AATAAGAATAATGTGGACAT+TGG | 0.486760 | 7.2:-31065120 | MS.gene27507:CDS |
| TTCTTCTTTCAATTTATGGA+TGG | 0.488135 | 7.2:+31063521 | None:intergenic |
| TAGTAGCTCTTCCGCTTCAC+AGG | 0.491680 | 7.2:-31058995 | MS.gene27507:CDS |
| AGATGGAGGATGATAAGAAA+AGG | 0.492027 | 7.2:-31065173 | MS.gene27507:CDS |
| CTAATGAATAATGGTAAGGA+TGG | 0.496905 | 7.2:-31064784 | MS.gene27507:CDS |
| ATATCATATATAGGCTGGAT+TGG | 0.502042 | 7.2:-31061801 | MS.gene27507:intron |
| CGAAATGGAGCACCAATAAG+AGG | 0.502472 | 7.2:+31058045 | None:intergenic |
| TAATATGCACATTCTGAAAG+AGG | 0.504205 | 7.2:-31063343 | MS.gene27507:intron |
| TCCAATGGACATCTGCCAAA+TGG | 0.508005 | 7.2:-31064214 | MS.gene27507:CDS |
| AGGATGTAGAATCACGTACC+AGG | 0.508226 | 7.2:-31064909 | MS.gene27507:CDS |
| ATATCATATGCAGGCTAGGT+TGG | 0.514515 | 7.2:-31062013 | MS.gene27507:intron |
| CGATCTGTTACTGAAAGAAA+AGG | 0.515874 | 7.2:-31061203 | MS.gene27507:intron |
| AATAATGTGGACATTGGGGT+TGG | 0.521321 | 7.2:-31065114 | MS.gene27507:CDS |
| AGCAAAGTGTGACTGTGGAT+TGG | 0.521937 | 7.2:-31064345 | MS.gene27507:CDS |
| TGATATTCACATGCAGAAAG+AGG | 0.522084 | 7.2:-31062895 | MS.gene27507:intron |
| CCACATGCTATGTGTTGAGC+TGG | 0.524467 | 7.2:-31058385 | MS.gene27507:CDS |
| TTCACAGGATGCTTCTGCAA+AGG | 0.524514 | 7.2:-31058980 | MS.gene27507:intron |
| GGAAGCATCGGTATGCTACA+AGG | 0.525354 | 7.2:-31059659 | MS.gene27507:CDS |
| TGATAAACACATTCATAAAG+AGG | 0.525919 | 7.2:-31062591 | MS.gene27507:intron |
| TAATCTGGTAAATGATGCTA+AGG | 0.527851 | 7.2:-31064587 | MS.gene27507:CDS |
| AAATCTGTTACTGAATGAAA+AGG | 0.529503 | 7.2:-31061980 | MS.gene27507:intron |
| TGTAAGAGATCTACAGCTGC+AGG | 0.532039 | 7.2:-31058115 | MS.gene27507:CDS |
| TCCGCAAATTCGATTGTGCA+TGG | 0.532641 | 7.2:-31064832 | MS.gene27507:CDS |
| GAGACTGCGACAAATTCGAT+TGG | 0.534345 | 7.2:-31064451 | MS.gene27507:CDS |
| ATTCACAAGATTTAGATCCC+TGG | 0.534586 | 7.2:+31064504 | None:intergenic |
| CATCGGTATGCTACAAGGGC+AGG | 0.537653 | 7.2:-31059654 | MS.gene27507:intron |
| GCGACAAATTCGATTGGGAA+TGG | 0.538570 | 7.2:-31064445 | MS.gene27507:CDS |
| AGGTGTTGGTAAATTCAAAT+GGG | 0.539735 | 7.2:-31064543 | MS.gene27507:CDS |
| AATCGAATTTGCGGAAACCT+CGG | 0.539932 | 7.2:+31064840 | None:intergenic |
| TCAGATGATTCGGGTTCAGA+TGG | 0.541087 | 7.2:+31058294 | None:intergenic |
| AACCAATGGAGTCGGCCGAC+GGG | 0.541820 | 7.2:-31064255 | MS.gene27507:CDS |
| CAACCAATGGAGTCGGCCGA+CGG | 0.544690 | 7.2:-31064256 | MS.gene27507:CDS |
| GAATTTGATGAGTAATGGTA+AGG | 0.545570 | 7.2:-31065070 | MS.gene27507:CDS |
| GATCAGAATTTGATGAGTAA+TGG | 0.545882 | 7.2:-31065075 | MS.gene27507:CDS |
| GGGCGAGCCTGCTCAACCAA+TGG | 0.548138 | 7.2:-31064269 | MS.gene27507:CDS |
| AAATCTAATGAATAATGGTA+AGG | 0.549311 | 7.2:-31064788 | MS.gene27507:CDS |
| ATATCATATGCAGGCTGGAT+CGG | 0.551335 | 7.2:-31061236 | MS.gene27507:intron |
| AAATGCTGAACTTGTTGAGA+AGG | 0.553493 | 7.2:-31058563 | MS.gene27507:intron |
| TGATATGCATGCTAAGAAAG+AGG | 0.554087 | 7.2:-31063044 | MS.gene27507:intron |
| AGACTGCGACAAATTCGATT+GGG | 0.554135 | 7.2:-31064450 | MS.gene27507:CDS |
| GGGGATCATAATCTGGTGAA+TGG | 0.555359 | 7.2:-31064985 | MS.gene27507:CDS |
| TAAGAATAATGTGGACATTG+GGG | 0.557410 | 7.2:-31065118 | MS.gene27507:CDS |
| TTTATTGATAATCTCTTCCG+TGG | 0.557896 | 7.2:+31062413 | None:intergenic |
| TCATATGCAGGCTAGGTTGG+CGG | 0.560785 | 7.2:-31062010 | MS.gene27507:intron |
| TGCATGGAGAGACAGACGCC+AGG | 0.562553 | 7.2:-31064816 | MS.gene27507:CDS |
| GGAATGGAGAAATAGGTACC+TGG | 0.562815 | 7.2:-31064429 | MS.gene27507:CDS |
| TCTGAAGTTACTGGACCTGA+TGG | 0.568507 | 7.2:-31058336 | MS.gene27507:CDS |
| GTTGAAATCTCAAATTGAAG+AGG | 0.568858 | 7.2:-31058617 | MS.gene27507:CDS |
| GCCTGCTCAACCAATGGAGT+CGG | 0.570341 | 7.2:-31064263 | MS.gene27507:CDS |
| AATTTGGTGAAAAGTGGAGA+GGG | 0.570370 | 7.2:-31064289 | MS.gene27507:CDS |
| TGAAGAGGCCTATATGTTGG+TGG | 0.573226 | 7.2:-31058602 | MS.gene27507:CDS |
| GAATCTGGTGAGTAATGGTA+AGG | 0.575005 | 7.2:-31064881 | MS.gene27507:CDS |
| TTGGTAAATTCAAATGGGTA+CGG | 0.576072 | 7.2:-31064538 | MS.gene27507:CDS |
| GTTGTCCCCAAAAGCTGAGT+GGG | 0.578605 | 7.2:+31064373 | None:intergenic |
| AATTGAAGAGGCCTATATGT+TGG | 0.580345 | 7.2:-31058605 | MS.gene27507:CDS |
| TGCAGAAGCATCCTGTGAAG+CGG | 0.580794 | 7.2:+31058984 | None:intergenic |
| GGTTACATCTATATCTGTGC+CGG | 0.582022 | 7.2:-31058271 | MS.gene27507:CDS |
| GGTACGTGATTCTACATCCT+CGG | 0.582548 | 7.2:+31064912 | None:intergenic |
| TAATGAATAATGGTAAGGAT+GGG | 0.585144 | 7.2:-31064783 | MS.gene27507:CDS |
| GATCAGAATCTGGTGAGTAA+TGG | 0.585537 | 7.2:-31064886 | MS.gene27507:CDS |
| AGTACTAATATGGATTCCAA+TGG | 0.586406 | 7.2:-31064229 | MS.gene27507:CDS |
| GGTGAGTAATGGTAAGGATG+AGG | 0.588985 | 7.2:-31064875 | MS.gene27507:CDS |
| TCAAATCTGAATGGAAGCAT+CGG | 0.592323 | 7.2:-31059671 | MS.gene27507:CDS |
| TGAATTGCAGAAACAAAAGC+AGG | 0.592695 | 7.2:-31062376 | MS.gene27507:intron |
| AGCCTGACAAAGATTAGCCT+CGG | 0.593215 | 7.2:+31064654 | None:intergenic |
| ACTCACCAGATTCTGATCCC+TGG | 0.593483 | 7.2:+31064891 | None:intergenic |
| TGATACACACATTCTTAAAG+GGG | 0.596160 | 7.2:-31063496 | MS.gene27507:intron |
| TTCATTGGAAAAGACTTTGG+TGG | 0.597963 | 7.2:-31058241 | MS.gene27507:CDS |
| TGAACAAGTTAATCTTTCTG+AGG | 0.603127 | 7.2:-31064563 | MS.gene27507:CDS |
| GCAAGTTAGTAGTATTTCTG+AGG | 0.605176 | 7.2:-31064950 | MS.gene27507:CDS |
| TCATATGCAGGCTGGATCGG+TGG | 0.609027 | 7.2:-31061233 | MS.gene27507:intron |
| CGGGGTGGTGAAACAGGTAA+CGG | 0.613035 | 7.2:-31065006 | MS.gene27507:CDS |
| GCTGCAGGATACCGAGAATG+TGG | 0.615133 | 7.2:-31058100 | MS.gene27507:CDS |
| CAAGCAAAATAAGAATAATG+TGG | 0.615458 | 7.2:-31065127 | MS.gene27507:CDS |
| CATATTAGTACTTTGCCCGT+CGG | 0.616114 | 7.2:+31064240 | None:intergenic |
| GAATTTGGTGAAAAGTGGAG+AGG | 0.618401 | 7.2:-31064290 | MS.gene27507:CDS |
| GAATCTGGTGAATGATGCTA+AGG | 0.618922 | 7.2:-31064401 | MS.gene27507:CDS |
| ATTCACCAGATTCTGATCCC+AGG | 0.621903 | 7.2:+31064411 | None:intergenic |
| TGAGCTGGATCGACCAGACA+CGG | 0.625329 | 7.2:-31058370 | MS.gene27507:CDS |
| ATCTGAACCCGAATCATCTG+AGG | 0.631659 | 7.2:-31058292 | MS.gene27507:CDS |
| CGTTATGCAGGCCAAAGCAG+AGG | 0.634069 | 7.2:-31062642 | MS.gene27507:intron |
| GCATGCAAGAGATCTACAGC+TGG | 0.634109 | 7.2:-31058187 | MS.gene27507:CDS |
| GAATGGAGAAATAGGTACCT+GGG | 0.634175 | 7.2:-31064428 | MS.gene27507:CDS |
| TGTGGATTGGAATGGAGATG+TGG | 0.635509 | 7.2:-31064332 | MS.gene27507:CDS |
| GGACATGCATGTGCAAAAGG+AGG | 0.637104 | 7.2:-31063207 | MS.gene27507:intron |
| TGAACAAGTTAATCTTTCCG+AGG | 0.644024 | 7.2:-31064671 | MS.gene27507:CDS |
| TCATCCTCAGCATTAGTCAG+CGG | 0.648919 | 7.2:+31064691 | None:intergenic |
| CTTACATCATTATCATCCAG+TGG | 0.651961 | 7.2:+31058132 | None:intergenic |
| GCATGGAGAGACAGACGCCA+GGG | 0.652193 | 7.2:-31064815 | MS.gene27507:CDS |
| GAAGCATCGGTATGCTACAA+GGG | 0.654082 | 7.2:-31059658 | MS.gene27507:CDS |
| GGTACGGAGAAACTTCAACC+AGG | 0.660734 | 7.2:-31064522 | MS.gene27507:CDS |
| CCAGCTCAACACATAGCATG+TGG | 0.661927 | 7.2:+31058385 | None:intergenic |
| AGTGTGACTGTGGATTGGAA+TGG | 0.662406 | 7.2:-31064340 | MS.gene27507:CDS |
| TGATGGAGCATCTGGTACCG+TGG | 0.663334 | 7.2:-31064722 | MS.gene27507:CDS |
| AGTTGTCCCCAAAAGCTGAG+TGG | 0.672502 | 7.2:+31064372 | None:intergenic |
| GGCTGTGCCAAATTCTACCG+AGG | 0.672995 | 7.2:-31064929 | MS.gene27507:CDS |
| TGATAAGCAAAGTGTGACTG+TGG | 0.674123 | 7.2:-31064350 | MS.gene27507:CDS |
| GGATGTAGAATCACGTACCA+GGG | 0.676411 | 7.2:-31064908 | MS.gene27507:CDS |
| TAATCCGCTGACTAATGCTG+AGG | 0.684098 | 7.2:-31064695 | MS.gene27507:CDS |
| GTACGGAGAAACTTCAACCA+GGG | 0.684249 | 7.2:-31064521 | MS.gene27507:CDS |
| GATGGAGAAATAGGTAACAG+AGG | 0.687770 | 7.2:-31064613 | MS.gene27507:CDS |
| GGGTGGTGAAACAGGTAACG+GGG | 0.689587 | 7.2:-31065004 | MS.gene27507:CDS |
| AGTCAGCGGATTATGATCCA+CGG | 0.696359 | 7.2:+31064705 | None:intergenic |
| TGAGGATGCTAGTCTCTCCG+AGG | 0.729972 | 7.2:-31064857 | MS.gene27507:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 31057969 | 31065193 | 31057969 | ID=MS.gene27507 |
| chr7.2 | mRNA | 31057969 | 31065193 | 31057969 | ID=MS.gene27507.t1;Parent=MS.gene27507 |
| chr7.2 | exon | 31064204 | 31065193 | 31064204 | ID=MS.gene27507.t1.exon1;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31064204 | 31065193 | 31064204 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31063497 | 31063559 | 31063497 | ID=MS.gene27507.t1.exon2;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31063497 | 31063559 | 31063497 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31063344 | 31063406 | 31063344 | ID=MS.gene27507.t1.exon3;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31063344 | 31063406 | 31063344 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31063208 | 31063270 | 31063208 | ID=MS.gene27507.t1.exon4;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31063208 | 31063270 | 31063208 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31063045 | 31063107 | 31063045 | ID=MS.gene27507.t1.exon5;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31063045 | 31063107 | 31063045 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31062896 | 31062958 | 31062896 | ID=MS.gene27507.t1.exon6;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31062896 | 31062958 | 31062896 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31062592 | 31062654 | 31062592 | ID=MS.gene27507.t1.exon7;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31062592 | 31062654 | 31062592 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31062377 | 31062439 | 31062377 | ID=MS.gene27507.t1.exon8;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31062377 | 31062439 | 31062377 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31062126 | 31062188 | 31062126 | ID=MS.gene27507.t1.exon9;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31062126 | 31062188 | 31062126 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31061981 | 31062022 | 31061981 | ID=MS.gene27507.t1.exon10;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31061981 | 31062022 | 31061981 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31061769 | 31061810 | 31061769 | ID=MS.gene27507.t1.exon11;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31061769 | 31061810 | 31061769 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31061535 | 31061597 | 31061535 | ID=MS.gene27507.t1.exon12;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31061535 | 31061597 | 31061535 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31061204 | 31061245 | 31061204 | ID=MS.gene27507.t1.exon13;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31061204 | 31061245 | 31061204 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31060971 | 31061033 | 31060971 | ID=MS.gene27507.t1.exon14;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31060971 | 31061033 | 31060971 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31060797 | 31060859 | 31060797 | ID=MS.gene27507.t1.exon15;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31060797 | 31060859 | 31060797 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31060633 | 31060695 | 31060633 | ID=MS.gene27507.t1.exon16;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31060633 | 31060695 | 31060633 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31060418 | 31060480 | 31060418 | ID=MS.gene27507.t1.exon17;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31060418 | 31060480 | 31060418 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31059655 | 31059714 | 31059655 | ID=MS.gene27507.t1.exon18;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31059655 | 31059714 | 31059655 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31058981 | 31059118 | 31058981 | ID=MS.gene27507.t1.exon19;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31058981 | 31059118 | 31058981 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31058564 | 31058662 | 31058564 | ID=MS.gene27507.t1.exon20;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31058564 | 31058662 | 31058564 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| chr7.2 | exon | 31057969 | 31058409 | 31057969 | ID=MS.gene27507.t1.exon21;Parent=MS.gene27507.t1 |
| chr7.2 | CDS | 31057969 | 31058409 | 31057969 | ID=cds.MS.gene27507.t1;Parent=MS.gene27507.t1 |
| Gene Sequence |
| Protein sequence |
