Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87680.t1 | XP_024626163.1 | 97.7 | 175 | 4 | 0 | 765 | 939 | 662 | 836 | 1.60E-83 | 321.2 |
| MS.gene87680.t1 | XP_024626163.1 | 96.3 | 27 | 1 | 0 | 324 | 350 | 316 | 342 | 5.50E-04 | 57 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87680.t1 | A0A072U0S8 | 97.7 | 173 | 4 | 0 | 767 | 939 | 739 | 911 | 1.6e-82 | 317.4 |
| MS.gene87680.t1 | A0A072U0S8 | 96.3 | 27 | 1 | 0 | 324 | 350 | 316 | 342 | 3.9e-04 | 57.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene87680 | 0.818614 | 1.79E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene87680 | 0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene87680 | 0.809506 | 1.83E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene87680 | 0.805976 | 1.03E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene87680 | 0.808658 | 2.78E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene87680 | 0.820716 | 5.92E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene87680 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene87680 | 0.800365 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87680 | MS.gene70587 | PPI |
| MS.gene007508 | MS.gene87680 | PPI |
| MS.gene97056 | MS.gene87680 | PPI |
| MS.gene033811 | MS.gene87680 | PPI |
| MS.gene049813 | MS.gene87680 | PPI |
| MS.gene95252 | MS.gene87680 | PPI |
| MS.gene20056 | MS.gene87680 | PPI |
| MS.gene004491 | MS.gene87680 | PPI |
| MS.gene87680 | MS.gene067126 | PPI |
| MS.gene87680 | MS.gene75814 | PPI |
| MS.gene060358 | MS.gene87680 | PPI |
| MS.gene00961 | MS.gene87680 | PPI |
| MS.gene87680 | MS.gene91079 | PPI |
| MS.gene45751 | MS.gene87680 | PPI |
| MS.gene036548 | MS.gene87680 | PPI |
| MS.gene056171 | MS.gene87680 | PPI |
| MS.gene002806 | MS.gene87680 | PPI |
| MS.gene22441 | MS.gene87680 | PPI |
| MS.gene022257 | MS.gene87680 | PPI |
| MS.gene041500 | MS.gene87680 | PPI |
| MS.gene007439 | MS.gene87680 | PPI |
| MS.gene25914 | MS.gene87680 | PPI |
| MS.gene016665 | MS.gene87680 | PPI |
| MS.gene29263 | MS.gene87680 | PPI |
| MS.gene87680 | MS.gene074392 | PPI |
| MS.gene88572 | MS.gene87680 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87680.t1 | MTR_7g073700 | 84.681 | 940 | 71 | 5 | 22 | 939 | 23 | 911 | 0.0 | 1491 |
| MS.gene87680.t1 | MTR_7g073700 | 82.402 | 716 | 65 | 4 | 22 | 715 | 23 | 699 | 0.0 | 1110 |
| MS.gene87680.t1 | MTR_0279s0010 | 73.878 | 245 | 13 | 3 | 274 | 488 | 1 | 224 | 3.92e-109 | 337 |
| MS.gene87680.t1 | MTR_7g073690 | 45.695 | 302 | 94 | 5 | 120 | 419 | 27 | 260 | 3.78e-59 | 214 |
| MS.gene87680.t1 | MTR_7g073690 | 49.133 | 173 | 53 | 7 | 9 | 147 | 9 | 180 | 2.01e-15 | 81.3 |
| MS.gene87680.t1 | MTR_7g073690 | 55.856 | 111 | 28 | 1 | 328 | 438 | 5 | 94 | 4.44e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87680.t1 | AT2G38580 | 32.645 | 484 | 229 | 11 | 459 | 932 | 85 | 481 | 5.22e-47 | 176 |
| MS.gene87680.t1 | AT2G38580 | 36.782 | 174 | 110 | 0 | 370 | 543 | 80 | 253 | 1.58e-22 | 102 |
| MS.gene87680.t1 | AT2G38580 | 35.000 | 400 | 199 | 10 | 558 | 932 | 97 | 460 | 1.11e-43 | 166 |
| MS.gene87680.t1 | AT2G38580 | 32.967 | 182 | 122 | 0 | 350 | 531 | 81 | 262 | 4.32e-17 | 85.9 |
| MS.gene87680.t1 | AT2G38580 | 36.994 | 173 | 109 | 0 | 371 | 543 | 81 | 253 | 1.53e-22 | 100 |
| MS.gene87680.t1 | AT2G38580 | 31.206 | 282 | 142 | 4 | 459 | 739 | 85 | 315 | 8.58e-19 | 89.4 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTTCTTTCAATTTA+TGG | 0.016395 | 7.1:+28776361 | None:intergenic |
| TCTCCATCATCGGTAGAATT+TGG | 0.231677 | 7.1:+28777715 | None:intergenic |
| TCCAATCAGAGATTTGAATT+TGG | 0.251426 | 7.1:-28777098 | MS.gene87680:CDS |
| TGAAGAGACTATCAGAAAAT+TGG | 0.251720 | 7.1:-28776056 | MS.gene87680:CDS |
| GGATGAGCCCACTCAGCTTT+TGG | 0.255578 | 7.1:-28777173 | MS.gene87680:CDS |
| GGGTTGGAGAAACAGCTATT+AGG | 0.264030 | 7.1:-28777888 | MS.gene87680:CDS |
| ATCATCATTCTCCACATTCT+TGG | 0.267294 | 7.1:+28769198 | None:intergenic |
| TACTGGTGTTTGACGAGTTT+TGG | 0.271586 | 7.1:+28769083 | None:intergenic |
| TTCTAGCAAAAGATTATTCT+TGG | 0.296886 | 7.1:+28770185 | None:intergenic |
| TACAATTAGAAAGTTGAATA+AGG | 0.301635 | 7.1:-28775730 | MS.gene87680:CDS |
| TGCAATTGTCTCCTCTGCTT+TGG | 0.308218 | 7.1:+28775415 | None:intergenic |
| ATCAAACTTTCTGAAGTTAC+TGG | 0.312931 | 7.1:-28769454 | MS.gene87680:CDS |
| TCGATTGGGGATGGAGAAAT+AGG | 0.316979 | 7.1:-28777229 | MS.gene87680:CDS |
| ACCAAATTCAAATCTCTGAT+TGG | 0.338746 | 7.1:+28777097 | None:intergenic |
| ATAACAGATGCTCCTCTTAT+CGG | 0.344203 | 7.1:-28769166 | MS.gene87680:CDS |
| ATAAGAGGAGCATCTGTTAT+TGG | 0.346996 | 7.1:+28769169 | None:intergenic |
| TTTCCCAGTCTCCGAAATAC+TGG | 0.347369 | 7.1:+28777828 | None:intergenic |
| ATGGATGATCTCTTCTGATA+TGG | 0.348137 | 7.1:+28776380 | None:intergenic |
| ATAAGAATAATGTGGACATT+GGG | 0.355821 | 7.1:-28777909 | MS.gene87680:CDS |
| TCGATTCGGGGTGGTGAAAC+AGG | 0.357244 | 7.1:-28777802 | MS.gene87680:CDS |
| TCGATCATAGATGGAGAAAT+AGG | 0.373037 | 7.1:-28777415 | MS.gene87680:CDS |
| GGTTGGAGAAACAGCTATTA+GGG | 0.378482 | 7.1:-28777887 | MS.gene87680:CDS |
| GGATGAACATGCCAGTATTT+CGG | 0.379221 | 7.1:-28777839 | MS.gene87680:CDS |
| GAAAGTTTGATTTCCGTGTC+TGG | 0.384943 | 7.1:+28769466 | None:intergenic |
| TGTGCCGGAGTTGGATTCAT+TGG | 0.393324 | 7.1:-28769365 | MS.gene87680:CDS |
| ACCGTTTATATAACCTTAGA+TGG | 0.393361 | 7.1:-28774669 | MS.gene87680:intron |
| GTATGTTAGTGGTGCTGATT+TGG | 0.393914 | 7.1:-28769110 | MS.gene87680:CDS |
| TCTGATAGTCTCTTCAGATA+TGG | 0.394533 | 7.1:+28776063 | None:intergenic |
| AGACGTAACCTCAGATGATT+CGG | 0.395676 | 7.1:+28769393 | None:intergenic |
| CCACTATTAAAATCAATTAC+TGG | 0.395817 | 7.1:+28769066 | None:intergenic |
| CTTACACATTCTTTACCATT+TGG | 0.399061 | 7.1:+28776992 | None:intergenic |
| CTGTAGATCTCTTGCATGCT+CGG | 0.402514 | 7.1:+28769300 | None:intergenic |
| AGAGCAGAAAGTATATATTC+TGG | 0.407699 | 7.1:-28774320 | MS.gene87680:CDS |
| AGACGGGCAAAGTACTAATA+TGG | 0.411053 | 7.1:-28777032 | MS.gene87680:CDS |
| TGCTGAAACCTCGGAAAGAC+TGG | 0.412522 | 7.1:+28777642 | None:intergenic |
| GGAAGCATCGGTATGCTACT+AGG | 0.416279 | 7.1:-28772367 | MS.gene87680:CDS |
| CAGAAAATTGGAAGAACAAA+AGG | 0.418589 | 7.1:-28776044 | MS.gene87680:CDS |
| ACCATCTAAGGTTATATAAA+CGG | 0.421534 | 7.1:+28774668 | None:intergenic |
| TGATGGACAGGACCGCGCTT+TGG | 0.426458 | 7.1:-28769758 | MS.gene87680:intron |
| TCATGTCAGAAGAGACAATC+AGG | 0.429236 | 7.1:-28776227 | MS.gene87680:CDS |
| CTAGAAGGGGAAACCATCTA+AGG | 0.429893 | 7.1:+28774656 | None:intergenic |
| TGATTGTCTACAGACTGGTT+TGG | 0.431463 | 7.1:-28773590 | MS.gene87680:intron |
| TATTACCTCTTTCTCACTAA+AGG | 0.431473 | 7.1:+28773705 | None:intergenic |
| GAGTTCATTTGTTGAGAAAG+AGG | 0.433857 | 7.1:-28773157 | MS.gene87680:intron |
| AGCTTGGCAGGTGGCAGAGT+TGG | 0.433989 | 7.1:-28770214 | MS.gene87680:intron |
| GAGGTGTTGATAAATTCAAA+TGG | 0.435256 | 7.1:-28777337 | MS.gene87680:CDS |
| GCAGACTCCATTGGTTTAGC+AGG | 0.437307 | 7.1:+28777055 | None:intergenic |
| GTCTATATCTGTGCCGGAGT+TGG | 0.439514 | 7.1:-28769374 | MS.gene87680:CDS |
| AATCGAATTTGTTGCAGTCT+CGG | 0.441206 | 7.1:+28777246 | None:intergenic |
| GATTTGAATTTGGTGAAAAG+TGG | 0.443291 | 7.1:-28777088 | MS.gene87680:CDS |
| ACAATTTCTTCAATATCATC+TGG | 0.449189 | 7.1:+28769271 | None:intergenic |
| TAGTACCTCTTTCTCACTAA+AGG | 0.451451 | 7.1:+28774282 | None:intergenic |
| GAACTTATTTCAAATCTGAA+TGG | 0.455223 | 7.1:-28772388 | MS.gene87680:CDS |
| GGATTCATTGGAAAAGACTT+TGG | 0.455291 | 7.1:-28769353 | MS.gene87680:CDS |
| TGCCCGTCTGCAGACTCCAT+TGG | 0.459031 | 7.1:+28777046 | None:intergenic |
| GGTATGGAGAAACTTCAATC+AGG | 0.459152 | 7.1:-28777315 | MS.gene87680:CDS |
| CATGCCAGTATTTCGGAGAC+TGG | 0.462395 | 7.1:-28777832 | MS.gene87680:CDS |
| ACGTACCAGGGATCAAAATC+TGG | 0.462880 | 7.1:-28777689 | MS.gene87680:CDS |
| GAGTTCCTTTAGTGAGAAAG+AGG | 0.463904 | 7.1:-28773710 | MS.gene87680:intron |
| GAGTTCCTTTAGTGAGAAAG+AGG | 0.463904 | 7.1:-28774287 | MS.gene87680:intron |
| TTGATAAATTCAAATGGGTA+TGG | 0.465870 | 7.1:-28777331 | MS.gene87680:CDS |
| ATCTGAGGCTAATCTTTCTC+AGG | 0.466036 | 7.1:-28777449 | MS.gene87680:CDS |
| CGAAATGGAGCACCGATAAG+AGG | 0.468771 | 7.1:+28769154 | None:intergenic |
| TGCTAGAAAACCAGCAATTG+AGG | 0.469562 | 7.1:-28770170 | MS.gene87680:CDS |
| AGACTGCAACAAATTCGATT+GGG | 0.469611 | 7.1:-28777243 | MS.gene87680:CDS |
| ACCATTTGGCAGATGTCCAT+TGG | 0.470084 | 7.1:+28777006 | None:intergenic |
| GACGTAACCTCAGATGATTC+GGG | 0.472635 | 7.1:+28769394 | None:intergenic |
| AGGTACCAGGGATCATAATC+TGG | 0.474292 | 7.1:-28777209 | MS.gene87680:CDS |
| ATCATATGTGCACGCTGGAT+TGG | 0.474417 | 7.1:-28774555 | MS.gene87680:CDS |
| AAAGGACATGCATGTGCAAA+AGG | 0.475045 | 7.1:-28776026 | MS.gene87680:CDS |
| AGAAATTGTTCAAATTCCAC+TGG | 0.475276 | 7.1:-28769257 | MS.gene87680:CDS |
| GCAGTAAGTTCGATCATAGA+TGG | 0.475284 | 7.1:-28777424 | MS.gene87680:CDS |
| AGGTAACGAGGATCATAATC+TGG | 0.475294 | 7.1:-28777782 | MS.gene87680:CDS |
| ACAAATTCAGTCAAACCATC+AGG | 0.478329 | 7.1:+28769430 | None:intergenic |
| CAATATGTTATTGAATGAAA+AGG | 0.481744 | 7.1:-28774522 | MS.gene87680:intron |
| GCTAGAAAACCAGCAATTGA+GGG | 0.485750 | 7.1:-28770169 | MS.gene87680:CDS |
| AATAAGAATAATGTGGACAT+TGG | 0.486760 | 7.1:-28777910 | MS.gene87680:CDS |
| TTTATTGATAATCTCTTCCA+TGG | 0.487138 | 7.1:+28775180 | None:intergenic |
| TAGTAGCTCTTCCGCTTCAC+AGG | 0.491680 | 7.1:-28770103 | MS.gene87680:CDS |
| AGATGGAGGATGATAAGAAA+AGG | 0.492027 | 7.1:-28777963 | MS.gene87680:CDS |
| AACTCTGTTACTGAATGAAA+AGG | 0.496778 | 7.1:-28774736 | MS.gene87680:CDS |
| GAGACTGCAACAAATTCGAT+TGG | 0.504064 | 7.1:-28777244 | MS.gene87680:CDS |
| TAATATGCACATTCTGAAAG+AGG | 0.504205 | 7.1:-28776187 | MS.gene87680:intron |
| TCATATGCAGGCTGGGTTGG+CGG | 0.507817 | 7.1:-28774766 | MS.gene87680:intron |
| TCCAATGGACATCTGCCAAA+TGG | 0.508005 | 7.1:-28777007 | MS.gene87680:CDS |
| AGGTAGCAGAGGTCATAATC+TGG | 0.508209 | 7.1:-28777395 | MS.gene87680:CDS |
| ATGATGGAGAATCACGTACC+AGG | 0.508226 | 7.1:-28777702 | MS.gene87680:CDS |
| GTGCCAAATTCTACCGATGA+TGG | 0.509742 | 7.1:-28777718 | MS.gene87680:CDS |
| CGATCTGTTACTGAAAGAAA+AGG | 0.515874 | 7.1:-28773956 | MS.gene87680:intron |
| ATCAGCACCACTAACATACT+TGG | 0.520008 | 7.1:+28769114 | None:intergenic |
| AATAATGTGGACATTGGGGT+TGG | 0.521321 | 7.1:-28777904 | MS.gene87680:CDS |
| AGCAAAGTGTGACTGTGGAT+TGG | 0.521937 | 7.1:-28777138 | MS.gene87680:CDS |
| TGATATTCACATGCAGAAAG+AGG | 0.522084 | 7.1:-28775703 | MS.gene87680:intron |
| ATATCATATGCAGGCTGGGT+TGG | 0.523958 | 7.1:-28774769 | MS.gene87680:intron |
| CAATTGAGGGAAAATGTGTC+TGG | 0.524022 | 7.1:-28770156 | MS.gene87680:CDS |
| CCACATGCTATGTGTTGAGC+TGG | 0.524467 | 7.1:-28769494 | MS.gene87680:CDS |
| TTCACAGGATGCTTCTGCAA+AGG | 0.524514 | 7.1:-28770088 | MS.gene87680:intron |
| AGGTGTTGATAAATTCAAAT+GGG | 0.525212 | 7.1:-28777336 | MS.gene87680:CDS |
| TGATAAACACATTCATAAAG+AGG | 0.525919 | 7.1:-28775375 | MS.gene87680:intron |
| TAATCTGGTAAATGATGCTA+AGG | 0.527851 | 7.1:-28777380 | MS.gene87680:CDS |
| TAATTCGCTGACTAATGCTA+AGG | 0.530185 | 7.1:-28777488 | MS.gene87680:CDS |
| AATCGAATTTGCTGAAACCT+CGG | 0.532415 | 7.1:+28777633 | None:intergenic |
| AAATCTATTGAGTAATGGTA+AGG | 0.535499 | 7.1:-28777581 | MS.gene87680:CDS |
| TTGATTGTGGATGGAGAACC+TGG | 0.535899 | 7.1:-28777523 | MS.gene87680:CDS |
| GAATTATGATCCACGGTACC+AGG | 0.537112 | 7.1:+28777505 | None:intergenic |
| GGTGAGTAATGGTAAGGATG+TGG | 0.539295 | 7.1:-28777668 | MS.gene87680:CDS |
| TGATATGCATGTCAAGAAAG+AGG | 0.539465 | 7.1:-28775860 | MS.gene87680:intron |
| TCAGATGATTCGGGTTCAGA+TGG | 0.541087 | 7.1:+28769403 | None:intergenic |
| GCGGAAAATTTGATTGTGGA+TGG | 0.541112 | 7.1:-28777532 | MS.gene87680:CDS |
| ATATCATATGCAGGCTGGAT+CGG | 0.541977 | 7.1:-28773989 | MS.gene87680:intron |
| GAATTTGATGAGTAATGGTA+AGG | 0.545570 | 7.1:-28777860 | MS.gene87680:CDS |
| GATCAGAATTTGATGAGTAA+TGG | 0.545882 | 7.1:-28777865 | MS.gene87680:CDS |
| CATCGGTATGCTACTAGGGC+AGG | 0.546754 | 7.1:-28772362 | MS.gene87680:intron |
| CTATTGAGTAATGGTAAGGA+TGG | 0.549172 | 7.1:-28777577 | MS.gene87680:CDS |
| TCAGCAAATTCGATTGTGCA+TGG | 0.550548 | 7.1:-28777625 | MS.gene87680:CDS |
| TGCTATTCTTTCTGAGACTG+CGG | 0.550826 | 7.1:-28777551 | MS.gene87680:CDS |
| AAATGCTGAACTTGTTGAGA+AGG | 0.553493 | 7.1:-28769671 | MS.gene87680:intron |
| GATCAAAATCTGGTGAGTAA+TGG | 0.553981 | 7.1:-28777679 | MS.gene87680:CDS |
| TAAGAATAATGTGGACATTG+GGG | 0.557410 | 7.1:-28777908 | MS.gene87680:CDS |
| GAGGATCATAATCTGGTGAA+TGG | 0.558024 | 7.1:-28777775 | MS.gene87680:CDS |
| AAATCTGGTGAGTAATGGTA+AGG | 0.559126 | 7.1:-28777674 | MS.gene87680:CDS |
| TGCATGGAGAGACAGACGCC+AGG | 0.562553 | 7.1:-28777609 | MS.gene87680:CDS |
| GATCAAAATCTATTGAGTAA+TGG | 0.566914 | 7.1:-28777586 | MS.gene87680:CDS |
| TCTGAAGTTACTGGACCTGA+TGG | 0.568507 | 7.1:-28769445 | MS.gene87680:CDS |
| GTTGAAATCTCAAATTGAAG+AGG | 0.568858 | 7.1:-28769725 | MS.gene87680:CDS |
| AATTTGGTGAAAAGTGGAGA+GGG | 0.570370 | 7.1:-28777082 | MS.gene87680:CDS |
| GAAGCATCGGTATGCTACTA+GGG | 0.570602 | 7.1:-28772366 | MS.gene87680:CDS |
| GCAACAAATTCGATTGGGGA+TGG | 0.572328 | 7.1:-28777238 | MS.gene87680:CDS |
| TGAAGAGGCCTATATGTTGG+TGG | 0.573226 | 7.1:-28769710 | MS.gene87680:CDS |
| TTTGCAAAGTTGATGAAGCT+AGG | 0.574518 | 7.1:+28774703 | None:intergenic |
| AAACCAATGGAGTCTGCAGA+CGG | 0.577286 | 7.1:-28777049 | MS.gene87680:CDS |
| GTTGTCCCCAAAAGCTGAGT+GGG | 0.578605 | 7.1:+28777166 | None:intergenic |
| GGTACGTGATTCTCCATCAT+CGG | 0.579763 | 7.1:+28777705 | None:intergenic |
| AATTGAAGAGGCCTATATGT+TGG | 0.580345 | 7.1:-28769713 | MS.gene87680:CDS |
| TGCAGAAGCATCCTGTGAAG+CGG | 0.580794 | 7.1:+28770092 | None:intergenic |
| CGAATTGCAGAAACAAAAGC+AGG | 0.583101 | 7.1:-28775143 | MS.gene87680:intron |
| TGCTATGCTTATTCAGAGAG+AGG | 0.586263 | 7.1:-28776491 | MS.gene87680:intron |
| AGTACTAATATGGATTCCAA+TGG | 0.586406 | 7.1:-28777022 | MS.gene87680:CDS |
| GATGGAGAAATAGGTAGCAG+AGG | 0.587501 | 7.1:-28777406 | MS.gene87680:CDS |
| AACCAATGGAGTCTGCAGAC+GGG | 0.588089 | 7.1:-28777048 | MS.gene87680:CDS |
| GGGATGGAGAAATAGGTACC+AGG | 0.589879 | 7.1:-28777222 | MS.gene87680:CDS |
| AGAGCAAAATATAATTCATG+TGG | 0.591847 | 7.1:-28773190 | MS.gene87680:CDS |
| TCAAATCTGAATGGAAGCAT+CGG | 0.592323 | 7.1:-28772379 | MS.gene87680:CDS |
| AATTCGCTGACTAATGCTAA+GGG | 0.592467 | 7.1:-28777487 | MS.gene87680:CDS |
| ATTCACCAGATTATGATCCC+TGG | 0.592931 | 7.1:+28777204 | None:intergenic |
| GGGCGAGCCTGCTAAACCAA+TGG | 0.593045 | 7.1:-28777062 | MS.gene87680:CDS |
| TTCATTGGAAAAGACTTTGG+TGG | 0.597963 | 7.1:-28769350 | MS.gene87680:CDS |
| TGTGGATGCCAGTCTTTCCG+AGG | 0.599629 | 7.1:-28777650 | MS.gene87680:CDS |
| ATGCCAGTATTTCGGAGACT+GGG | 0.604090 | 7.1:-28777831 | MS.gene87680:CDS |
| TTCTCTGCAGACTGATCTAG+AGG | 0.604737 | 7.1:-28774932 | MS.gene87680:intron |
| TGAGCAAGTTAGTATTTCTG+AGG | 0.611356 | 7.1:-28777743 | MS.gene87680:CDS |
| TAATCTGGTGAATGATGCTA+AGG | 0.615271 | 7.1:-28777194 | MS.gene87680:CDS |
| CAAGCAAAATAAGAATAATG+TGG | 0.615458 | 7.1:-28777917 | MS.gene87680:CDS |
| GAATTTGGTGAAAAGTGGAG+AGG | 0.618401 | 7.1:-28777083 | MS.gene87680:CDS |
| TATTGAGTAATGGTAAGGAT+GGG | 0.620381 | 7.1:-28777576 | MS.gene87680:CDS |
| GGTTACGTCTATATCTGTGC+CGG | 0.621688 | 7.1:-28769380 | MS.gene87680:CDS |
| GTATGGAGAAACTTCAATCA+GGG | 0.623861 | 7.1:-28777314 | MS.gene87680:CDS |
| TGAGCTGGATCGACCAGACA+CGG | 0.625329 | 7.1:-28769479 | MS.gene87680:CDS |
| TAATCTGGTGAATGGTGCTA+AGG | 0.626795 | 7.1:-28777767 | MS.gene87680:CDS |
| GTTATATAAACGGTGAACGA+AGG | 0.629640 | 7.1:+28774678 | None:intergenic |
| TGAACAAGTTAATCTATCTG+AGG | 0.630206 | 7.1:-28777464 | MS.gene87680:CDS |
| ATCTGAACCCGAATCATCTG+AGG | 0.631659 | 7.1:-28769401 | MS.gene87680:CDS |
| GACTGCGGAAAATTTGATTG+TGG | 0.631761 | 7.1:-28777536 | MS.gene87680:CDS |
| GCTGCAAGATACCAAGAATG+TGG | 0.632532 | 7.1:-28769209 | MS.gene87680:CDS |
| CGTTATGCAGGCCAAAGCAG+AGG | 0.634069 | 7.1:-28775426 | MS.gene87680:intron |
| GCATGCAAGAGATCTACAGC+TGG | 0.634109 | 7.1:-28769296 | MS.gene87680:CDS |
| TGTGGATTGGAATGGAGATG+TGG | 0.635509 | 7.1:-28777125 | MS.gene87680:CDS |
| GGACATGCATGTGCAAAAGG+AGG | 0.637104 | 7.1:-28776023 | MS.gene87680:intron |
| TCATATGCAGGCTGGATCGG+AGG | 0.639713 | 7.1:-28773986 | MS.gene87680:intron |
| GACTGCAACAAATTCGATTG+GGG | 0.641163 | 7.1:-28777242 | MS.gene87680:CDS |
| TGATGGAGAATCACGTACCA+GGG | 0.645104 | 7.1:-28777701 | MS.gene87680:CDS |
| CTTACATCATTATCATCCAG+TGG | 0.651961 | 7.1:+28769241 | None:intergenic |
| GCATGGAGAGACAGACGCCA+GGG | 0.652193 | 7.1:-28777608 | MS.gene87680:CDS |
| ACTATATCATATGTGCACGC+TGG | 0.652569 | 7.1:-28774560 | MS.gene87680:CDS |
| GGATGGAGAACCTGGTACCG+TGG | 0.656111 | 7.1:-28777515 | MS.gene87680:CDS |
| AGTCAGCGAATTATGATCCA+CGG | 0.659307 | 7.1:+28777498 | None:intergenic |
| CCAGCTCAACACATAGCATG+TGG | 0.661927 | 7.1:+28769494 | None:intergenic |
| AGTGTGACTGTGGATTGGAA+TGG | 0.662406 | 7.1:-28777133 | MS.gene87680:CDS |
| AGTTGTCCCCAAAAGCTGAG+TGG | 0.672502 | 7.1:+28777165 | None:intergenic |
| TGATAAGCAAAGTGTGACTG+TGG | 0.674123 | 7.1:-28777143 | MS.gene87680:CDS |
| TGATACACACATTCGTAACG+AGG | 0.676314 | 7.1:-28776340 | MS.gene87680:intron |
| GGATGGAGAAATAGGTACCA+GGG | 0.686635 | 7.1:-28777221 | MS.gene87680:CDS |
| GGGTGGTGAAACAGGTAACG+AGG | 0.711020 | 7.1:-28777794 | MS.gene87680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 28769078 | 28777983 | 28769078 | ID=MS.gene87680 |
| chr7.1 | mRNA | 28769078 | 28777983 | 28769078 | ID=MS.gene87680.t1;Parent=MS.gene87680 |
| chr7.1 | exon | 28776997 | 28777983 | 28776997 | ID=MS.gene87680.t1.exon1;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28776997 | 28777983 | 28776997 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28776492 | 28776554 | 28776492 | ID=MS.gene87680.t1.exon2;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28776492 | 28776554 | 28776492 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28776341 | 28776403 | 28776341 | ID=MS.gene87680.t1.exon3;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28776341 | 28776403 | 28776341 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28776188 | 28776250 | 28776188 | ID=MS.gene87680.t1.exon4;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28776188 | 28776250 | 28776188 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28776024 | 28776086 | 28776024 | ID=MS.gene87680.t1.exon5;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28776024 | 28776086 | 28776024 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28775861 | 28775923 | 28775861 | ID=MS.gene87680.t1.exon6;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28775861 | 28775923 | 28775861 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28775704 | 28775766 | 28775704 | ID=MS.gene87680.t1.exon7;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28775704 | 28775766 | 28775704 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28775376 | 28775438 | 28775376 | ID=MS.gene87680.t1.exon8;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28775376 | 28775438 | 28775376 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28775144 | 28775206 | 28775144 | ID=MS.gene87680.t1.exon9;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28775144 | 28775206 | 28775144 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28774882 | 28774944 | 28774882 | ID=MS.gene87680.t1.exon10;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28774882 | 28774944 | 28774882 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28774670 | 28774778 | 28774670 | ID=MS.gene87680.t1.exon11;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28774670 | 28774778 | 28774670 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28774523 | 28774584 | 28774523 | ID=MS.gene87680.t1.exon12;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28774523 | 28774584 | 28774523 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28774288 | 28774350 | 28774288 | ID=MS.gene87680.t1.exon13;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28774288 | 28774350 | 28774288 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28773957 | 28773998 | 28773957 | ID=MS.gene87680.t1.exon14;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28773957 | 28773998 | 28773957 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28773711 | 28773773 | 28773711 | ID=MS.gene87680.t1.exon15;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28773711 | 28773773 | 28773711 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28773537 | 28773599 | 28773537 | ID=MS.gene87680.t1.exon16;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28773537 | 28773599 | 28773537 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28773373 | 28773435 | 28773373 | ID=MS.gene87680.t1.exon17;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28773373 | 28773435 | 28773373 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28773158 | 28773220 | 28773158 | ID=MS.gene87680.t1.exon18;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28773158 | 28773220 | 28773158 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28772363 | 28772422 | 28772363 | ID=MS.gene87680.t1.exon19;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28772363 | 28772422 | 28772363 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28770089 | 28770226 | 28770089 | ID=MS.gene87680.t1.exon20;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28770089 | 28770226 | 28770089 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28769672 | 28769770 | 28769672 | ID=MS.gene87680.t1.exon21;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28769672 | 28769770 | 28769672 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| chr7.1 | exon | 28769078 | 28769518 | 28769078 | ID=MS.gene87680.t1.exon22;Parent=MS.gene87680.t1 |
| chr7.1 | CDS | 28769078 | 28769518 | 28769078 | ID=cds.MS.gene87680.t1;Parent=MS.gene87680.t1 |
| Gene Sequence |
| Protein sequence |
