AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018261

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018261.t1 MTR_6g016015 97.941 437 7 1 1 435 1 437 0.0 882
MS.gene018261.t1 MTR_4g110030 80.253 395 74 1 44 434 43 437 0.0 674
MS.gene018261.t1 MTR_2g059350 78.660 403 81 2 32 434 39 436 0.0 671
MS.gene018261.t1 MTR_4g082310 58.495 412 169 2 23 434 8 417 1.01e-178 509
MS.gene018261.t1 MTR_5g042200 58.313 403 157 3 43 437 9 408 2.25e-178 508
MS.gene018261.t1 MTR_5g064620 54.012 324 148 1 112 435 110 432 2.28e-119 358
MS.gene018261.t1 MTR_3g099480 52.941 323 148 1 113 435 140 458 1.39e-116 352
MS.gene018261.t1 MTR_4g125460 49.541 327 159 4 112 437 88 409 4.29e-116 348
MS.gene018261.t1 MTR_4g125460 49.541 327 159 4 112 437 227 548 9.75e-115 350
MS.gene018261.t1 MTR_4g019210 51.057 331 144 4 112 435 231 550 6.40e-112 343
MS.gene018261.t1 MTR_3g096020 48.943 331 163 3 108 437 184 509 2.23e-109 335
MS.gene018261.t1 MTR_5g081690 48.916 323 159 4 114 435 122 439 2.53e-108 330
MS.gene018261.t1 MTR_3g115220 45.679 324 170 5 112 434 110 428 8.86e-87 276
MS.gene018261.t1 MTR_4g100810 45.152 330 175 5 106 434 101 425 2.24e-86 274
MS.gene018261.t1 MTR_5g099010 44.375 320 171 4 116 434 122 435 4.29e-83 266
MS.gene018261.t1 MTR_5g012770 45.455 330 163 6 106 434 117 430 4.98e-82 261
MS.gene018261.t1 MTR_3g086570 39.528 339 185 5 112 434 149 483 7.19e-78 252
MS.gene018261.t1 MTR_4g084570 38.095 336 192 5 112 434 149 481 4.44e-75 245
MS.gene018261.t1 MTR_2g016470 38.522 379 195 7 96 436 172 550 4.48e-75 246
MS.gene018261.t1 MTR_1g031590 38.095 336 192 5 112 434 148 480 6.90e-75 244
MS.gene018261.t1 MTR_3g005340 39.017 346 197 6 101 434 135 478 6.00e-74 242
MS.gene018261.t1 MTR_3g100310 36.240 367 193 7 105 433 89 452 5.10e-73 238
MS.gene018261.t1 MTR_5g059260 38.209 335 191 5 114 435 158 489 9.51e-73 239
MS.gene018261.t1 MTR_5g032100 35.955 356 192 5 112 433 85 438 2.58e-71 233
MS.gene018261.t1 MTR_1g102030 39.714 350 194 8 96 433 72 416 5.23e-71 233
MS.gene018261.t1 MTR_4g132590 37.637 364 181 7 113 433 65 425 3.97e-65 217
MS.gene018261.t1 MTR_4g132590 37.637 364 181 7 113 433 164 524 4.86e-64 216
MS.gene018261.t1 MTR_3g026650 39.130 322 185 5 116 433 176 490 6.87e-64 216
MS.gene018261.t1 MTR_3g086570 38.194 288 158 5 112 383 149 432 4.87e-62 207
MS.gene018261.t1 MTR_3g026650 38.558 319 185 5 116 430 176 487 6.14e-62 208
MS.gene018261.t1 MTR_4g023030 36.858 331 180 6 116 433 236 550 7.64e-59 203
MS.gene018261.t1 MTR_7g064210 56.069 173 62 3 226 385 17 188 1.24e-58 198
MS.gene018261.t1 MTR_4g010990 34.969 326 193 7 112 433 74 384 1.98e-55 190
MS.gene018261.t1 MTR_4g010990 33.548 310 187 7 128 433 1 295 1.42e-47 167
MS.gene018261.t1 MTR_1g101990 42.791 215 118 3 221 433 1 212 3.22e-46 162
MS.gene018261.t1 MTR_3g092590 35.473 296 175 6 112 393 89 382 1.47e-45 166
MS.gene018261.t1 MTR_3g092590 35.473 296 175 6 112 393 89 382 6.42e-45 166
MS.gene018261.t1 MTR_7g017330 31.908 304 177 8 112 394 97 391 2.07e-40 153
MS.gene018261.t1 MTR_3g026650 38.326 227 129 5 116 338 176 395 5.74e-37 140
MS.gene018261.t1 MTR_1g007390 32.781 302 181 7 112 393 89 388 1.50e-36 142
MS.gene018261.t1 MTR_1g101985 51.087 92 44 1 96 187 72 162 2.01e-23 97.1
MS.gene018261.t1 MTR_1g052225 39.157 166 50 5 110 275 18 132 2.84e-22 92.4
MS.gene018261.t1 MTR_4g008200 23.353 334 208 12 110 433 32 327 1.31e-18 87.4
MS.gene018261.t1 MTR_4g008200 23.653 334 207 13 110 433 83 378 1.94e-18 87.4
MS.gene018261.t1 MTR_6g046230 43.363 113 47 2 161 261 34 141 4.35e-18 80.9
MS.gene018261.t1 MTR_2g038320 23.188 345 201 10 106 433 85 382 2.74e-15 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018261.t1 AT5G15740 71.971 421 115 2 16 435 10 428 0.0 656
MS.gene018261.t1 AT3G02250 71.734 421 116 2 16 435 10 428 0.0 646
MS.gene018261.t1 AT1G14020 60.606 396 149 2 39 434 23 411 0.0 516
MS.gene018261.t1 AT2G03280 56.566 396 159 3 39 434 26 408 2.49e-167 479
MS.gene018261.t1 AT2G03280 52.955 423 159 5 39 434 26 435 2.68e-161 465
MS.gene018261.t1 AT1G22460 50.779 321 154 1 115 435 162 478 1.13e-113 345
MS.gene018261.t1 AT5G64600 49.851 335 150 4 108 435 112 435 1.83e-112 340
MS.gene018261.t1 AT5G35570 50.000 326 155 4 114 437 252 571 4.20e-112 344
MS.gene018261.t1 AT2G37980 51.385 325 152 3 112 435 225 544 7.75e-112 343
MS.gene018261.t1 AT3G54100 50.769 325 154 3 112 435 221 540 5.30e-111 340
MS.gene018261.t1 AT5G01100 49.541 327 159 3 110 435 213 534 3.43e-106 328
MS.gene018261.t1 AT4G38390 45.679 324 171 4 112 434 122 441 2.76e-89 282
MS.gene018261.t1 AT1G76270 45.133 339 178 6 97 434 91 422 6.00e-88 279
MS.gene018261.t1 AT1G20550 43.544 333 171 6 108 434 104 425 1.71e-86 275
MS.gene018261.t1 AT1G38065 38.251 366 203 7 84 435 12 368 4.14e-80 256
MS.gene018261.t1 AT3G26370 39.045 356 195 6 95 434 142 491 4.15e-80 258
MS.gene018261.t1 AT4G16650 45.015 331 176 5 105 434 114 439 7.67e-80 257
MS.gene018261.t1 AT4G16650 45.015 331 176 5 105 434 114 439 7.67e-80 257
MS.gene018261.t1 AT1G38065 39.466 337 186 6 113 435 26 358 1.07e-79 254
MS.gene018261.t1 AT1G38131 39.466 337 186 6 113 435 155 487 1.79e-78 254
MS.gene018261.t1 AT1G04910 42.296 331 183 6 106 433 83 408 1.19e-77 251
MS.gene018261.t1 AT4G24530 37.535 357 185 6 112 433 100 453 5.99e-76 246
MS.gene018261.t1 AT2G01480 37.500 336 194 5 112 434 153 485 1.69e-74 243
MS.gene018261.t1 AT2G01480 37.500 336 194 5 112 434 153 485 9.66e-74 241
MS.gene018261.t1 AT5G65470 36.639 363 190 6 112 437 84 443 1.38e-73 239
MS.gene018261.t1 AT1G35510 40.299 335 184 5 113 434 159 490 2.09e-73 241
MS.gene018261.t1 AT1G14970 37.612 335 193 5 113 434 9 340 3.98e-73 236
MS.gene018261.t1 AT1G14970 37.612 335 193 5 113 434 35 366 6.39e-73 236
MS.gene018261.t1 AT1G62330 37.363 364 181 7 114 433 222 582 1.84e-71 238
MS.gene018261.t1 AT1G14970 37.612 335 193 5 113 434 155 486 2.22e-71 235
MS.gene018261.t1 AT1G29200 39.167 360 183 6 113 436 70 429 2.96e-71 233
MS.gene018261.t1 AT1G29200 39.167 360 183 6 113 436 70 429 2.96e-71 233
MS.gene018261.t1 AT1G11990 40.181 331 187 6 114 433 191 521 4.73e-71 235
MS.gene018261.t1 AT5G63390 40.248 323 181 5 116 433 167 482 2.02e-70 233
MS.gene018261.t1 AT1G29200 39.167 360 183 6 113 436 186 545 4.01e-70 233
MS.gene018261.t1 AT1G29200 38.873 355 181 6 118 436 1 355 7.99e-69 225
MS.gene018261.t1 AT1G11990 36.141 368 187 6 114 433 176 543 1.47e-65 221
MS.gene018261.t1 AT2G44500 37.578 322 191 4 116 433 180 495 1.79e-60 207
MS.gene018261.t1 AT3G07900 35.913 323 195 6 116 433 191 506 1.83e-57 199
MS.gene018261.t1 AT1G52630 34.431 334 201 8 112 441 73 392 9.24e-57 194
MS.gene018261.t1 AT3G03810 35.410 305 173 7 107 393 83 381 6.72e-49 177
MS.gene018261.t1 AT3G03810 35.410 305 173 7 107 393 83 381 6.72e-49 177
MS.gene018261.t1 AT1G52630 32.704 318 196 8 128 441 1 304 3.20e-48 169
MS.gene018261.t1 AT3G26370 38.208 212 118 4 95 297 142 349 2.17e-42 154
MS.gene018261.t1 AT3G30300 32.013 303 173 9 106 387 96 386 7.61e-39 149
MS.gene018261.t1 AT3G30300 32.013 303 173 9 106 387 96 386 7.61e-39 149
MS.gene018261.t1 AT2G44500 36.638 232 137 4 116 343 180 405 7.40e-35 134

Find 89 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTGCAATTGGAGAATTT+TGG 0.164028 6.3:+11043223 MS.gene018261:CDS
GTCGAGCATCGGTCTTATTT+AGG 0.246601 6.3:-11044662 None:intergenic
CTATTACTACTGTGATTCTT+TGG 0.265553 6.3:+11043184 MS.gene018261:CDS
CCATTTGTGATGAGTGGTTT+TGG 0.268432 6.3:-11045346 None:intergenic
TAAGAATAATGGTTATCTTA+TGG 0.276020 6.3:+11043993 MS.gene018261:CDS
AGCTTGATAAATCGTCATTC+TGG 0.276618 6.3:+11044218 MS.gene018261:CDS
AGATGAAGTTAGAATATTAA+AGG 0.285974 6.3:+11044420 MS.gene018261:CDS
GCCTTCTCTGGCTGCACTCA+TGG 0.306503 6.3:+11044855 MS.gene018261:CDS
TCAGGGATTTATAAGAATAA+TGG 0.316108 6.3:+11043982 MS.gene018261:intron
CTCAAGAGAAGAGTTGAATT+AGG 0.338975 6.3:+11044457 MS.gene018261:CDS
GAGGGAAAGAGGACCTTTCC+TGG 0.367903 6.3:+11044800 MS.gene018261:CDS
AAGTGATCACTGTGAGGAAA+TGG 0.367940 6.3:+11043071 MS.gene018261:CDS
ATGGATATGTTGGCCTTCTC+TGG 0.368715 6.3:+11044843 MS.gene018261:CDS
CAATAAAACAGTACCTTCTA+TGG 0.373758 6.3:-11045451 None:intergenic
GAAATATCCGACCAACTAAT+CGG 0.379890 6.3:-11044499 None:intergenic
ATTCAAATTTATATTGCTGC+TGG 0.386692 6.3:+11045127 MS.gene018261:CDS
TTCTTTCTACCGACCAAGTT+AGG 0.387922 6.3:-11045199 None:intergenic
ACCGTCTTTCCTCTTAAGTT+CGG 0.391839 6.3:-11045041 None:intergenic
TCTTGGTGACTGAAACAATA+AGG 0.397969 6.3:-11043270 None:intergenic
TATCTTATGGTTTCTTGCAA+TGG 0.398386 6.3:+11044006 MS.gene018261:CDS
GTTGTTCAGTTGATTGCAAT+TGG 0.399638 6.3:+11043213 MS.gene018261:CDS
TTCTTAGATATGCTTATCCT+TGG 0.399940 6.3:+11044996 MS.gene018261:intron
ATTGCTGCTGGAGAAATATT+CGG 0.400610 6.3:+11045139 MS.gene018261:CDS
GGCATACCCTTCAACAACTT+TGG 0.401643 6.3:-11043249 None:intergenic
ATATTTGTTCCAACATATGA+TGG 0.428867 6.3:+11045404 MS.gene018261:CDS
CTCATCACAAATGGCTGCAT+TGG 0.431973 6.3:+11045355 MS.gene018261:CDS
TGTAGCAAAGGCTAGTGTTT+CGG 0.441505 6.3:+11043311 MS.gene018261:CDS
TTAGATATGCTTATCCTTGG+TGG 0.452084 6.3:+11044999 MS.gene018261:intron
AAATATCCGACCAACTAATC+GGG 0.453315 6.3:-11044498 None:intergenic
CGCAGATTCTTCCTCTCATA+CGG 0.465185 6.3:+11044622 MS.gene018261:intron
TCATAAATTCCGAACTTAAG+AGG 0.466422 6.3:+11045032 MS.gene018261:CDS
AAGTCGTTGAAGGCCATAGA+AGG 0.466633 6.3:+11045438 MS.gene018261:CDS
GCGAGCTACTTATCCTAACT+TGG 0.472434 6.3:+11045186 MS.gene018261:CDS
TGCTCTAATACTGAAAGCAC+TGG 0.474801 6.3:+11045090 MS.gene018261:CDS
TTGGGGTCCAAAGTTGTTGA+AGG 0.477681 6.3:+11043242 MS.gene018261:CDS
AGTATTAGAGCAGTTTCCTC+AGG 0.478111 6.3:-11045079 None:intergenic
AAAGGCTAGTGTTTCGGCTA+AGG 0.479165 6.3:+11043317 MS.gene018261:CDS
TATCTACATCAAATATGTCT+TGG 0.480238 6.3:-11044378 None:intergenic
TAGATATGAGATGGATATGT+TGG 0.483181 6.3:+11044833 MS.gene018261:CDS
GCTTGATAAATCGTCATTCT+GGG 0.485095 6.3:+11044219 MS.gene018261:CDS
CCAAAACCACTCATCACAAA+TGG 0.486452 6.3:+11045346 MS.gene018261:CDS
CTTATGGTTTCTTGCAATGG+AGG 0.488912 6.3:+11044009 MS.gene018261:CDS
ATGTGATAGCAGCGAGGTTG+AGG 0.489083 6.3:+11044878 MS.gene018261:CDS
TGGAAATACATCAAATCTGA+AGG 0.489779 6.3:-11045326 None:intergenic
GCAGTTTCCTCAGGTGTTAA+CGG 0.492035 6.3:-11045070 None:intergenic
CATATCTAAGATGAAGTACC+AGG 0.495742 6.3:-11044818 None:intergenic
GCCATGTTTCCATCATATGT+TGG 0.500626 6.3:-11045413 None:intergenic
ATGAAGTTGTGAAGTCTAAG+AGG 0.505853 6.3:+11043121 MS.gene018261:CDS
GGTAAGGAAGGAAACTCTGC+TGG 0.511062 6.3:+11045301 MS.gene018261:intron
TTATCCTTGGTGGAAGGAAA+AGG 0.516235 6.3:+11045009 MS.gene018261:CDS
CTACAGATGAAGATGCATCT+TGG 0.527347 6.3:-11043287 None:intergenic
TCAACTCTTCTCTTGAGCCT+AGG 0.531532 6.3:-11044451 None:intergenic
TCCGAACTTAAGAGGAAAGA+CGG 0.533451 6.3:+11045040 MS.gene018261:CDS
CGTCATTCTGGGCCGATCCA+AGG 0.538229 6.3:+11044230 MS.gene018261:CDS
TTCATCTGTAGTTGTAGCAA+AGG 0.540883 6.3:+11043299 MS.gene018261:CDS
AACATGGCTAAAGTCGTTGA+AGG 0.548148 6.3:+11045428 MS.gene018261:CDS
AATGACGATTTATCAAGCTC+TGG 0.553192 6.3:-11044214 None:intergenic
TGGGGTCCAAAGTTGTTGAA+GGG 0.569861 6.3:+11043243 MS.gene018261:CDS
AGGTTATCAAAAGTATCTGA+TGG 0.572072 6.3:+11043045 MS.gene018261:CDS
ACTTCATCTTAGATATGAGA+TGG 0.574403 6.3:+11044824 MS.gene018261:CDS
CTAAGATGAAGTACCAGGAA+AGG 0.576609 6.3:-11044813 None:intergenic
CACTGTGAGGAAATGGAGAT+GGG 0.579908 6.3:+11043078 MS.gene018261:CDS
ACTCTTCTCTTGAGCCTAGG+TGG 0.580749 6.3:-11044448 None:intergenic
ATATGCTTATCCTTGGTGGA+AGG 0.581937 6.3:+11045003 MS.gene018261:CDS
ATTCGGTGGAAAGAGAAGAA+TGG 0.589294 6.3:+11045156 MS.gene018261:CDS
ACCTTGTGTTTCCGTATGAG+AGG 0.596897 6.3:-11044633 None:intergenic
TCACTGTGAGGAAATGGAGA+TGG 0.598317 6.3:+11043077 MS.gene018261:CDS
AGAGGTTTGTTGTAAAGCCG+AGG 0.599346 6.3:+11043139 MS.gene018261:CDS
GCCGAGGATCAAAATGTGGA+TGG 0.599695 6.3:+11043155 MS.gene018261:CDS
ATGCAGCCATTTGTGATGAG+TGG 0.600456 6.3:-11045352 None:intergenic
ATTGTTAGCAAGTCGAGCAT+CGG 0.606467 6.3:-11044673 None:intergenic
TCAACGCACTAAAATTTACT+CGG 0.617406 6.3:-11044728 None:intergenic
TTGAGGAACTCACACGAATG+AGG 0.617787 6.3:+11044895 MS.gene018261:CDS
ACTTCTCAGATAGAACAACT+AGG 0.625398 6.3:+11044756 MS.gene018261:CDS
ACAATGTGCAAACCTTGGAT+CGG 0.628923 6.3:-11044242 None:intergenic
TCCAACATATGATGGAAACA+TGG 0.636574 6.3:+11045412 MS.gene018261:CDS
TCCATGAGTGCAGCCAGAGA+AGG 0.637197 6.3:-11044856 None:intergenic
TCTACTACCACAGGTAAGGA+AGG 0.638240 6.3:+11045289 MS.gene018261:intron
AATATCCGACCAACTAATCG+GGG 0.639424 6.3:-11044497 None:intergenic
GATGCTCGACTTGCTAACAA+TGG 0.647559 6.3:+11044675 MS.gene018261:CDS
TAAAGCCGAGGATCAAAATG+TGG 0.647777 6.3:+11043151 MS.gene018261:CDS
AACTAGGTAGAAAGATAGTG+AGG 0.649462 6.3:+11044772 MS.gene018261:CDS
TATTCTGCAGATATGCGACA+TGG 0.654426 6.3:+11044153 MS.gene018261:intron
TCCTCTCATACGGAAACACA+AGG 0.673092 6.3:+11044632 MS.gene018261:CDS
TTTATGTCCGTTAACACCTG+AGG 0.675937 6.3:+11045063 MS.gene018261:CDS
TATTAAAGGAACTACCACCT+AGG 0.678913 6.3:+11044434 MS.gene018261:CDS
GCTGCTGGAGAAATATTCGG+TGG 0.702946 6.3:+11045142 MS.gene018261:CDS
ATATCCGACCAACTAATCGG+GGG 0.718638 6.3:-11044496 None:intergenic
TCATGGATGTGATAGCAGCG+AGG 0.773321 6.3:+11044872 MS.gene018261:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATAAAAAAAAAA+AGG - chr6.3:11043875-11043894 None:intergenic 0.0%
!! TCATATAAATTTAATGATTG+CGG - chr6.3:11044091-11044110 None:intergenic 15.0%
!! AGATGAAGTTAGAATATTAA+AGG + chr6.3:11044420-11044439 MS.gene018261:CDS 20.0%
!! TAAGAATAATGGTTATCTTA+TGG + chr6.3:11043993-11044012 MS.gene018261:CDS 20.0%
!! TGATAAGAATAAGAATCTTA+TGG + chr6.3:11043930-11043949 MS.gene018261:intron 20.0%
!!! ATTCTGTTTTTCTCAAAATT+TGG + chr6.3:11044125-11044144 MS.gene018261:intron 20.0%
!!! ATTTGATAATTCTTTTCATC+AGG + chr6.3:11043964-11043983 MS.gene018261:intron 20.0%
!!! TTTGATAATTCTTTTCATCA+GGG + chr6.3:11043965-11043984 MS.gene018261:intron 20.0%
! AACATCAAAGTAACAAAAAG+AGG - chr6.3:11044348-11044367 None:intergenic 25.0%
! AGAACTTTGAATCATAAACA+CGG + chr6.3:11043417-11043436 MS.gene018261:intron 25.0%
! ATATTTGTTCCAACATATGA+TGG + chr6.3:11045404-11045423 MS.gene018261:CDS 25.0%
! ATTCAAATTTATATTGCTGC+TGG + chr6.3:11045127-11045146 MS.gene018261:CDS 25.0%
! CAATCTAAATAGTACATCAA+AGG - chr6.3:11045517-11045536 None:intergenic 25.0%
! GAGATTTCAATTAAGAAATC+AGG - chr6.3:11044326-11044345 None:intergenic 25.0%
! TAGATTGTGCCTTTATATTA+TGG + chr6.3:11043659-11043678 MS.gene018261:intron 25.0%
! TATCTACATCAAATATGTCT+TGG - chr6.3:11044381-11044400 None:intergenic 25.0%
! TCAGGGATTTATAAGAATAA+TGG + chr6.3:11043982-11044001 MS.gene018261:intron 25.0%
!! TATAAAGGCACAATCTAATT+AGG - chr6.3:11043656-11043675 None:intergenic 25.0%
!!! ACAACCAAAAACTTACTTTT+TGG - chr6.3:11043354-11043373 None:intergenic 25.0%
!!! TGTTTGTAACCTTTTTTTTC+CGG + chr6.3:11045265-11045284 MS.gene018261:intron 25.0%
AAATTTAATGATTGCGGCAA+AGG - chr6.3:11044085-11044104 None:intergenic 30.0%
ACTTCATCTTAGATATGAGA+TGG + chr6.3:11044824-11044843 MS.gene018261:CDS 30.0%
ATCAGGAAGATAATCGTAAA+TGG - chr6.3:11044309-11044328 None:intergenic 30.0%
CAATAAAACAGTACCTTCTA+TGG - chr6.3:11045454-11045473 None:intergenic 30.0%
CAGTAGATTGTTGTCAAATA+GGG + chr6.3:11043710-11043729 MS.gene018261:intron 30.0%
CTATTACTACTGTGATTCTT+TGG + chr6.3:11043184-11043203 MS.gene018261:CDS 30.0%
TAGATATGAGATGGATATGT+TGG + chr6.3:11044833-11044852 MS.gene018261:CDS 30.0%
TATCTTATGGTTTCTTGCAA+TGG + chr6.3:11044006-11044025 MS.gene018261:CDS 30.0%
TATTTCGTACTACGAAAAAC+AGG + chr6.3:11044516-11044535 MS.gene018261:CDS 30.0%
TCAACGCACTAAAATTTACT+CGG - chr6.3:11044731-11044750 None:intergenic 30.0%
TCATAAATTCCGAACTTAAG+AGG + chr6.3:11045032-11045051 MS.gene018261:CDS 30.0%
TGGAAATACATCAAATCTGA+AGG - chr6.3:11045329-11045348 None:intergenic 30.0%
TTCTTAGATATGCTTATCCT+TGG + chr6.3:11044996-11045015 MS.gene018261:intron 30.0%
TTGTGCCTTTATATTATGGT+TGG + chr6.3:11043663-11043682 MS.gene018261:intron 30.0%
! AAAGATAGTGAGGATTTTGA+GGG + chr6.3:11044782-11044801 MS.gene018261:CDS 30.0%
! AAGACTTTTCTGCAATATCA+TGG - chr6.3:11043618-11043637 None:intergenic 30.0%
! ATTGCAATTGGAGAATTTTG+GGG + chr6.3:11043225-11043244 MS.gene018261:CDS 30.0%
! CTTTATATTATGGTTGGTGT+CGG + chr6.3:11043669-11043688 MS.gene018261:intron 30.0%
! GATTGCAATTGGAGAATTTT+GGG + chr6.3:11043224-11043243 MS.gene018261:CDS 30.0%
! TGATTGCAATTGGAGAATTT+TGG + chr6.3:11043223-11043242 MS.gene018261:CDS 30.0%
!! AGGTTATCAAAAGTATCTGA+TGG + chr6.3:11043045-11043064 MS.gene018261:CDS 30.0%
!!! ACCAAAAACTTACTTTTTGG+CGG - chr6.3:11043351-11043370 None:intergenic 30.0%
AAATATCCGACCAACTAATC+GGG - chr6.3:11044501-11044520 None:intergenic 35.0%
AACAATCTACTGCACTATCA+TGG - chr6.3:11043702-11043721 None:intergenic 35.0%
AACTAGGTAGAAAGATAGTG+AGG + chr6.3:11044772-11044791 MS.gene018261:CDS 35.0%
AATGACGATTTATCAAGCTC+TGG - chr6.3:11044217-11044236 None:intergenic 35.0%
ACTTCTCAGATAGAACAACT+AGG + chr6.3:11044756-11044775 MS.gene018261:CDS 35.0%
AGCTTGATAAATCGTCATTC+TGG + chr6.3:11044218-11044237 MS.gene018261:CDS 35.0%
ATGAAGTTGTGAAGTCTAAG+AGG + chr6.3:11043121-11043140 MS.gene018261:CDS 35.0%
ATTGCTGCTGGAGAAATATT+CGG + chr6.3:11045139-11045158 MS.gene018261:CDS 35.0%
CAATAACAATGTGCAAACCT+TGG - chr6.3:11044250-11044269 None:intergenic 35.0%
CGACACCAACCATAATATAA+AGG - chr6.3:11043671-11043690 None:intergenic 35.0%
CTCAAGAGAAGAGTTGAATT+AGG + chr6.3:11044457-11044476 MS.gene018261:CDS 35.0%
CTTACATAGCAATCACATTG+TGG + chr6.3:11043733-11043752 MS.gene018261:intron 35.0%
GAAATATCCGACCAACTAAT+CGG - chr6.3:11044502-11044521 None:intergenic 35.0%
GATAATGTCGCTGTCAAATA+GGG + chr6.3:11043775-11043794 MS.gene018261:intron 35.0%
GCAGTAGATTGTTGTCAAAT+AGG + chr6.3:11043709-11043728 MS.gene018261:intron 35.0%
GCTTGATAAATCGTCATTCT+GGG + chr6.3:11044219-11044238 MS.gene018261:CDS 35.0%
GGTAACTAATGCTAAGTACT+TGG - chr6.3:11044064-11044083 None:intergenic 35.0%
GTAGTAGAACCGGAAAAAAA+AGG - chr6.3:11045277-11045296 None:intergenic 35.0%
GTTGTTCAGTTGATTGCAAT+TGG + chr6.3:11043213-11043232 MS.gene018261:CDS 35.0%
TATTAAAGGAACTACCACCT+AGG + chr6.3:11044434-11044453 MS.gene018261:CDS 35.0%
TTAGATATGCTTATCCTTGG+TGG + chr6.3:11044999-11045018 MS.gene018261:intron 35.0%
TTCATCTGTAGTTGTAGCAA+AGG + chr6.3:11043299-11043318 MS.gene018261:CDS 35.0%
TTGCTAGATGTCTCTTTCTA+TGG + chr6.3:11045471-11045490 MS.gene018261:intron 35.0%
! CATATCTAAGATGAAGTACC+AGG - chr6.3:11044821-11044840 None:intergenic 35.0%
! GAAAGATAGTGAGGATTTTG+AGG + chr6.3:11044781-11044800 MS.gene018261:CDS 35.0%
! TCCAACATATGATGGAAACA+TGG + chr6.3:11045412-11045431 MS.gene018261:CDS 35.0%
! TCCGCCAAAAAGTAAGTTTT+TGG + chr6.3:11043347-11043366 MS.gene018261:intron 35.0%
! TCTTGGTGACTGAAACAATA+AGG - chr6.3:11043273-11043292 None:intergenic 35.0%
! TGCAATATCATGGATTGCAA+CGG - chr6.3:11043608-11043627 None:intergenic 35.0%
!! ATGGGATTCAATGTTTTGAG+TGG + chr6.3:11043096-11043115 MS.gene018261:CDS 35.0%
!! GAGTAAATTTTAGTGCGTTG+AGG + chr6.3:11044730-11044749 MS.gene018261:CDS 35.0%
AACATGGCTAAAGTCGTTGA+AGG + chr6.3:11045428-11045447 MS.gene018261:CDS 40.0%
AAGTGATCACTGTGAGGAAA+TGG + chr6.3:11043071-11043090 MS.gene018261:CDS 40.0%
AATATCCGACCAACTAATCG+GGG - chr6.3:11044500-11044519 None:intergenic 40.0%
ACAATGTGCAAACCTTGGAT+CGG - chr6.3:11044245-11044264 None:intergenic 40.0%
ACCGTCTTTCCTCTTAAGTT+CGG - chr6.3:11045044-11045063 None:intergenic 40.0%
AGTATTAGAGCAGTTTCCTC+AGG - chr6.3:11045082-11045101 None:intergenic 40.0%
ATATGCTTATCCTTGGTGGA+AGG + chr6.3:11045003-11045022 MS.gene018261:CDS 40.0%
ATGCATGAGCCCTTATATTG+TGG + chr6.3:11043575-11043594 MS.gene018261:intron 40.0%
ATTGTTAGCAAGTCGAGCAT+CGG - chr6.3:11044676-11044695 None:intergenic 40.0%
CCAAAACCACTCATCACAAA+TGG + chr6.3:11045346-11045365 MS.gene018261:CDS 40.0%
CGATAATGTCGCTGTCAAAT+AGG + chr6.3:11043774-11043793 MS.gene018261:intron 40.0%
CTACAGATGAAGATGCATCT+TGG - chr6.3:11043290-11043309 None:intergenic 40.0%
CTTATGGTTTCTTGCAATGG+AGG + chr6.3:11044009-11044028 MS.gene018261:CDS 40.0%
GCCATGTTTCCATCATATGT+TGG - chr6.3:11045416-11045435 None:intergenic 40.0%
GCTACTTATCCTAACTTGGT+CGG + chr6.3:11045190-11045209 MS.gene018261:intron 40.0%
GGACTGTGACCACAATATAA+GGG - chr6.3:11043587-11043606 None:intergenic 40.0%
TAAAGCCGAGGATCAAAATG+TGG + chr6.3:11043151-11043170 MS.gene018261:CDS 40.0%
TATTCTGCAGATATGCGACA+TGG + chr6.3:11044153-11044172 MS.gene018261:intron 40.0%
TCCGAACTTAAGAGGAAAGA+CGG + chr6.3:11045040-11045059 MS.gene018261:CDS 40.0%
TGGAAAAAGTGATCACTGTG+AGG + chr6.3:11043065-11043084 MS.gene018261:CDS 40.0%
TGTAGCAAAGGCTAGTGTTT+CGG + chr6.3:11043311-11043330 MS.gene018261:CDS 40.0%
TTATCCTTGGTGGAAGGAAA+AGG + chr6.3:11045009-11045028 MS.gene018261:CDS 40.0%
TTCTTTCTACCGACCAAGTT+AGG - chr6.3:11045202-11045221 None:intergenic 40.0%
TTTATGTCCGTTAACACCTG+AGG + chr6.3:11045063-11045082 MS.gene018261:CDS 40.0%
! ATTCGGTGGAAAGAGAAGAA+TGG + chr6.3:11045156-11045175 MS.gene018261:CDS 40.0%
! CCATTTGTGATGAGTGGTTT+TGG - chr6.3:11045349-11045368 None:intergenic 40.0%
! CTAAGATGAAGTACCAGGAA+AGG - chr6.3:11044816-11044835 None:intergenic 40.0%
! CTCAGCTTTTGAATCTCGAT+AGG - chr6.3:11044705-11044724 None:intergenic 40.0%
! TGCTCTAATACTGAAAGCAC+TGG + chr6.3:11045090-11045109 MS.gene018261:CDS 40.0%
AAACACGGACACGTTGACAT+CGG + chr6.3:11043432-11043451 MS.gene018261:intron 45.0%
AAAGGCTAGTGTTTCGGCTA+AGG + chr6.3:11043317-11043336 MS.gene018261:CDS 45.0%
AAGTCGTTGAAGGCCATAGA+AGG + chr6.3:11045438-11045457 MS.gene018261:CDS 45.0%
ACCTTGTGTTTCCGTATGAG+AGG - chr6.3:11044636-11044655 None:intergenic 45.0%
AGAGTTTCCTTCCTTACCTG+TGG - chr6.3:11045299-11045318 None:intergenic 45.0%
ATATCCGACCAACTAATCGG+GGG - chr6.3:11044499-11044518 None:intergenic 45.0%
ATGCAGCCATTTGTGATGAG+TGG - chr6.3:11045355-11045374 None:intergenic 45.0%
CACTGTGAGGAAATGGAGAT+GGG + chr6.3:11043078-11043097 MS.gene018261:CDS 45.0%
CGCAGATTCTTCCTCTCATA+CGG + chr6.3:11044622-11044641 MS.gene018261:intron 45.0%
CGGACTGTGACCACAATATA+AGG - chr6.3:11043588-11043607 None:intergenic 45.0%
CTCATCACAAATGGCTGCAT+TGG + chr6.3:11045355-11045374 MS.gene018261:CDS 45.0%
CTTACCTGTGGTAGTAGAAC+CGG - chr6.3:11045287-11045306 None:intergenic 45.0%
GCAGTTTCCTCAGGTGTTAA+CGG - chr6.3:11045073-11045092 None:intergenic 45.0%
GCGAGCTACTTATCCTAACT+TGG + chr6.3:11045186-11045205 MS.gene018261:CDS 45.0%
GGCATACCCTTCAACAACTT+TGG - chr6.3:11043252-11043271 None:intergenic 45.0%
TCAACTCTTCTCTTGAGCCT+AGG - chr6.3:11044454-11044473 None:intergenic 45.0%
TCACTGTGAGGAAATGGAGA+TGG + chr6.3:11043077-11043096 MS.gene018261:CDS 45.0%
TCCTCTCATACGGAAACACA+AGG + chr6.3:11044632-11044651 MS.gene018261:CDS 45.0%
TCTACTACCACAGGTAAGGA+AGG + chr6.3:11045289-11045308 MS.gene018261:intron 45.0%
TGGGGTCCAAAGTTGTTGAA+GGG + chr6.3:11043243-11043262 MS.gene018261:CDS 45.0%
TTGAGGAACTCACACGAATG+AGG + chr6.3:11044895-11044914 MS.gene018261:CDS 45.0%
TTGGGGTCCAAAGTTGTTGA+AGG + chr6.3:11043242-11043261 MS.gene018261:CDS 45.0%
! ATGACCTTTTCCTTCCACCA+AGG - chr6.3:11045016-11045035 None:intergenic 45.0%
! TTTTCCGGTTCTACTACCAC+AGG + chr6.3:11045280-11045299 MS.gene018261:intron 45.0%
!! AGAGGTTTGTTGTAAAGCCG+AGG + chr6.3:11043139-11043158 MS.gene018261:CDS 45.0%
!! ATGGATATGTTGGCCTTCTC+TGG + chr6.3:11044843-11044862 MS.gene018261:CDS 45.0%
!! GATGCTCGACTTGCTAACAA+TGG + chr6.3:11044675-11044694 MS.gene018261:CDS 45.0%
!! GCCATCCACATTTTGATCCT+CGG - chr6.3:11043159-11043178 None:intergenic 45.0%
!! GTCGAGCATCGGTCTTATTT+AGG - chr6.3:11044665-11044684 None:intergenic 45.0%
!! GTGAGGATTTTGAGGGAAAG+AGG + chr6.3:11044789-11044808 MS.gene018261:CDS 45.0%
ACTCATTGCCCCCGATTAGT+TGG + chr6.3:11044488-11044507 MS.gene018261:CDS 50.0%
ACTCTTCTCTTGAGCCTAGG+TGG - chr6.3:11044451-11044470 None:intergenic 50.0%
ATGTGATAGCAGCGAGGTTG+AGG + chr6.3:11044878-11044897 MS.gene018261:CDS 50.0%
CGGTTCTACTACCACAGGTA+AGG + chr6.3:11045285-11045304 MS.gene018261:intron 50.0%
GCCGAGGATCAAAATGTGGA+TGG + chr6.3:11043155-11043174 MS.gene018261:CDS 50.0%
GCTGCTGGAGAAATATTCGG+TGG + chr6.3:11045142-11045161 MS.gene018261:CDS 50.0%
GGTAAGGAAGGAAACTCTGC+TGG + chr6.3:11045301-11045320 MS.gene018261:intron 50.0%
TCATGGATGTGATAGCAGCG+AGG + chr6.3:11044872-11044891 MS.gene018261:CDS 50.0%
! ATTGCCCCCGATTAGTTGGT+CGG + chr6.3:11044492-11044511 MS.gene018261:CDS 50.0%
GAGGGAAAGAGGACCTTTCC+TGG + chr6.3:11044800-11044819 MS.gene018261:CDS 55.0%
TCCATGAGTGCAGCCAGAGA+AGG - chr6.3:11044859-11044878 None:intergenic 55.0%
CGTCATTCTGGGCCGATCCA+AGG + chr6.3:11044230-11044249 MS.gene018261:CDS 60.0%
GCCTTCTCTGGCTGCACTCA+TGG + chr6.3:11044855-11044874 MS.gene018261:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 11043033 11045557 11043033 ID=MS.gene018261
chr6.3 mRNA 11043033 11045557 11043033 ID=MS.gene018261.t1;Parent=MS.gene018261
chr6.3 exon 11043033 11043357 11043033 ID=MS.gene018261.t1.exon1;Parent=MS.gene018261.t1
chr6.3 CDS 11043033 11043357 11043033 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11043986 11044053 11043986 ID=MS.gene018261.t1.exon2;Parent=MS.gene018261.t1
chr6.3 CDS 11043986 11044053 11043986 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11044163 11044251 11044163 ID=MS.gene018261.t1.exon3;Parent=MS.gene018261.t1
chr6.3 CDS 11044163 11044251 11044163 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11044372 11044537 11044372 ID=MS.gene018261.t1.exon4;Parent=MS.gene018261.t1
chr6.3 CDS 11044372 11044537 11044372 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11044627 11044916 11044627 ID=MS.gene018261.t1.exon5;Parent=MS.gene018261.t1
chr6.3 CDS 11044627 11044916 11044627 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11045003 11045207 11045003 ID=MS.gene018261.t1.exon6;Parent=MS.gene018261.t1
chr6.3 CDS 11045003 11045207 11045003 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11045302 11045459 11045302 ID=MS.gene018261.t1.exon7;Parent=MS.gene018261.t1
chr6.3 CDS 11045302 11045459 11045302 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
chr6.3 exon 11045533 11045557 11045533 ID=MS.gene018261.t1.exon8;Parent=MS.gene018261.t1
chr6.3 CDS 11045533 11045557 11045533 ID=cds.MS.gene018261.t1;Parent=MS.gene018261.t1
Gene Sequence

>MS.gene018261

ATGATGTTGTTGAGGTTATCAAAAGTATCTGATGGAAAAAGTGATCACTGTGAGGAAATGGAGATGGGATTCAATGTTTTGAGTGGTGATGAAGTTGTGAAGTCTAAGAGGTTTGTTGTAAAGCCGAGGATCAAAATGTGGATGGCACGCGCTATTACTACTGTGATTCTTTGGACTAGTGTTGTTCAGTTGATTGCAATTGGAGAATTTTGGGGTCCAAAGTTGTTGAAGGGTATGCCTTATTGTTTCAGTCACCAAGATGCATCTTCATCTGTAGTTGTAGCAAAGGCTAGTGTTTCGGCTAAGGTTGCGCTTCCGCCAAAAAGTAAGTTTTTGGTTGTTTATATGATAGTTGAAGTAGTTGTAGCTTGTTTTTGAACTTTAAGAACTTTGAATCATAAACACGGACACGTTGACATCGGTAATAGTTTATGAAAATGAAATCGATTGAATGCGACTGCGTGTCACGTTGACACTATCAATGCTACACTGTTTAAGAATTATTCTCATTACAAAAAGTCGTAATGAGATTCTCGTTGATTATGCATGAGCCCTTATATTGTGGTCACAGTCCGTTGCAATCCATGATATTGCAGAAAAGTCTTCTCATTACAGAACGTCCTAATTAGATTGTGCCTTTATATTATGGTTGGTGTCGGTCGTGATCCATGATAGTGCAGTAGATTGTTGTCAAATAGGGCTTACATAGCAATCACATTGTGGTTGAAGAGACATCAAACACGATAATGTCGCTGTCAAATAGGGCTTACATAGCAATCACATTGTGGTTGAAGAGACATCAAACACGATAATGTCGCAGTCTAAATCACAGTCGCAGACCTTTTTTTTTTTATAAAAAAAACTCTGCATATTTACTAAAAAGCTTGTTTCTTCTTATGATAAGAATAAGAATCTTATGGATATTAGCTAAATTTGATAATTCTTTTCATCAGGGATTTATAAGAATAATGGTTATCTTATGGTTTCTTGCAATGGAGGACTCAATCAAATGAGAGCAGCAGTGAGTTCCAAGTACTTAGCATTAGTTACCTTTGCCGCAATCATTAAATTTATATGAGCACGCTTAGTTTGATTCTGTTTTTCTCAAAATTTGGAATTCTATTCTGCAGATATGCGACATGGTTGCTATTGCAAGACATTTAAATGTCACTCTCATAGTTCCAGAGCTTGATAAATCGTCATTCTGGGCCGATCCAAGGTTTGCACATTGTTATTGTTTGCATCATAAATAACTTTAGTTGAGAAAACATCTCCATTTACGATTATCTTCCTGATTTCTTAATTGAAATCTCCTCTTTTTGTTACTTTGATGTTGCAGTGAGTTCCAAGACATATTTGATGTAGATAATTTCATTGCATCTTTGAGAGATGAAGTTAGAATATTAAAGGAACTACCACCTAGGCTCAAGAGAAGAGTTGAATTAGGATTGTCTTACTCATTGCCCCCGATTAGTTGGTCGGATATTTCGTACTACGAAAAACAGGTCTTCAATTTAATATAGTTTCTTTCACTTATCAGTATTTTTTCTTGAGATACTTCAGTGAAACTAATTCTCTTGCGTGTTTCTCGCAGATTCTTCCTCTCATACGGAAACACAAGGTTGTGCACCTAAATAAGACCGATGCTCGACTTGCTAACAATGGATTGCCTATCGAGATTCAAAAGCTGAGATGCCGAGTAAATTTTAGTGCGTTGAGGTTTACTTCTCAGATAGAACAACTAGGTAGAAAGATAGTGAGGATTTTGAGGGAAAGAGGACCTTTCCTGGTACTTCATCTTAGATATGAGATGGATATGTTGGCCTTCTCTGGCTGCACTCATGGATGTGATAGCAGCGAGGTTGAGGAACTCACACGAATGAGGTAATGATCTAAATCTTATGTTTATGATTACAGCATGTATTTTTGTTTACTCTTTGAATGTGATATTGAAAAATTGTATTTCTTAGATATGCTTATCCTTGGTGGAAGGAAAAGGTCATAAATTCCGAACTTAAGAGGAAAGACGGTTTATGTCCGTTAACACCTGAGGAAACTGCTCTAATACTGAAAGCACTGGACATAGATCAAAATATTCAAATTTATATTGCTGCTGGAGAAATATTCGGTGGAAAGAGAAGAATGGCACGTTTGCGAGCTACTTATCCTAACTTGGTCGGTAGAAAGAAGCAAAAACACATGTGTCTGTCTGTTTATCTATTTGTGTGTGTTTGTTTGTAACCTTTTTTTTCCGGTTCTACTACCACAGGTAAGGAAGGAAACTCTGCTGGAACCTTCAGATTTGATGTATTTCCAAAACCACTCATCACAAATGGCTGCATTGGATTATCTTGTGTCTCTAGAAAGTGATATATTTGTTCCAACATATGATGGAAACATGGCTAAAGTCGTTGAAGGCCATAGAAGGTACTGTTTTATTGCTAGATGTCTCTTTCTATGGCATCTTCTCAGTAACATCATCCTTTGATGTACTATTTAGATTGCATGATACATCATTACTCTGA
Protein sequence

>MS.gene018261.t1

MMLLRLSKVSDGKSDHCEEMEMGFNVLSGDEVVKSKRFVVKPRIKMWMARAITTVILWTSVVQLIAIGEFWGPKLLKGMPYCFSHQDASSSVVVAKASVSAKVALPPKRIYKNNGYLMVSCNGGLNQMRAAICDMVAIARHLNVTLIVPELDKSSFWADPSEFQDIFDVDNFIASLRDEVRILKELPPRLKRRVELGLSYSLPPISWSDISYYEKQILPLIRKHKVVHLNKTDARLANNGLPIEIQKLRCRVNFSALRFTSQIEQLGRKIVRILRERGPFLVLHLRYEMDMLAFSGCTHGCDSSEVEELTRMRYAYPWWKEKVINSELKRKDGLCPLTPEETALILKALDIDQNIQIYIAAGEIFGGKRRMARLRATYPNLVRKETLLEPSDLMYFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRLHDTSLL