AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55283

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55283.t1 MTR_5g042200 97.166 494 13 1 1 493 1 494 0.0 1007
MS.gene55283.t1 MTR_4g082310 79.381 485 94 3 9 493 28 506 0.0 816
MS.gene55283.t1 MTR_4g110030 61.752 468 175 3 10 475 43 508 0.0 608
MS.gene55283.t1 MTR_2g059350 60.421 475 173 4 3 475 46 507 0.0 597
MS.gene55283.t1 MTR_6g016015 58.774 473 179 3 9 475 45 507 0.0 596
MS.gene55283.t1 MTR_5g064620 49.148 411 197 4 78 476 101 511 5.73e-139 410
MS.gene55283.t1 MTR_4g125460 47.739 398 201 5 84 479 89 481 2.43e-135 400
MS.gene55283.t1 MTR_4g125460 47.739 398 201 5 84 479 228 620 1.05e-133 400
MS.gene55283.t1 MTR_4g019210 48.363 397 198 5 84 478 232 623 1.97e-133 400
MS.gene55283.t1 MTR_3g099480 47.653 426 204 6 71 480 119 541 1.04e-131 392
MS.gene55283.t1 MTR_5g081690 46.231 398 207 5 83 478 120 512 8.59e-129 384
MS.gene55283.t1 MTR_3g096020 47.433 409 190 7 87 480 192 590 1.81e-127 384
MS.gene55283.t1 MTR_4g100810 41.606 411 217 8 80 484 104 497 4.09e-99 308
MS.gene55283.t1 MTR_3g115220 43.182 396 210 9 85 478 112 494 1.20e-98 308
MS.gene55283.t1 MTR_5g099010 44.444 396 198 9 87 477 122 500 2.20e-97 305
MS.gene55283.t1 MTR_5g012770 42.157 408 212 9 80 486 120 504 1.45e-93 293
MS.gene55283.t1 MTR_3g086570 39.295 397 213 10 74 451 141 528 6.47e-86 275
MS.gene55283.t1 MTR_5g032100 37.209 430 221 10 84 477 86 502 3.37e-85 271
MS.gene55283.t1 MTR_7g064210 80.357 168 23 2 197 355 22 188 1.12e-83 265
MS.gene55283.t1 MTR_3g100310 36.323 446 224 11 71 476 90 515 1.40e-83 268
MS.gene55283.t1 MTR_5g059260 38.107 412 225 11 85 476 158 559 1.37e-79 259
MS.gene55283.t1 MTR_4g084570 34.783 414 247 10 84 483 150 554 3.04e-79 258
MS.gene55283.t1 MTR_1g102030 34.623 491 267 14 19 481 29 493 6.58e-79 255
MS.gene55283.t1 MTR_4g132590 37.415 441 221 11 81 476 62 492 2.34e-78 253
MS.gene55283.t1 MTR_4g132590 37.415 441 221 11 81 476 161 591 3.82e-77 253
MS.gene55283.t1 MTR_2g016470 35.294 442 237 8 78 478 183 616 1.56e-76 252
MS.gene55283.t1 MTR_1g031590 34.230 409 242 9 84 476 149 546 2.04e-75 247
MS.gene55283.t1 MTR_3g005340 34.719 409 244 11 84 478 147 546 5.64e-72 239
MS.gene55283.t1 MTR_4g023030 36.139 404 233 9 87 482 236 622 5.92e-67 226
MS.gene55283.t1 MTR_3g026650 35.013 397 239 8 87 478 176 558 1.05e-66 224
MS.gene55283.t1 MTR_3g086570 39.262 298 157 8 74 353 141 432 1.36e-63 213
MS.gene55283.t1 MTR_3g026650 37.304 319 188 5 87 400 176 487 4.66e-57 197
MS.gene55283.t1 MTR_4g010990 33.424 368 217 9 84 444 75 421 8.16e-57 195
MS.gene55283.t1 MTR_1g101990 37.793 299 164 8 193 481 3 289 9.28e-56 189
MS.gene55283.t1 MTR_4g010990 32.011 353 212 9 99 444 1 332 2.04e-48 171
MS.gene55283.t1 MTR_3g092590 32.039 309 182 9 81 366 82 385 2.12e-41 156
MS.gene55283.t1 MTR_3g092590 32.039 309 182 9 81 366 82 385 7.38e-41 155
MS.gene55283.t1 MTR_7g017330 31.023 303 190 6 73 359 87 386 2.23e-40 154
MS.gene55283.t1 MTR_3g026650 36.797 231 134 5 87 312 176 399 3.71e-35 135
MS.gene55283.t1 MTR_1g007390 29.841 315 187 10 81 366 82 391 4.22e-33 133
MS.gene55283.t1 MTR_1g101985 40.411 146 73 3 19 160 29 164 8.71e-26 104
MS.gene55283.t1 MTR_4g008200 26.888 331 193 14 84 403 35 327 4.76e-23 100
MS.gene55283.t1 MTR_4g008200 26.888 331 193 14 84 403 86 378 7.90e-23 100
MS.gene55283.t1 MTR_2g038320 25.291 344 200 10 84 413 92 392 1.31e-21 97.4
MS.gene55283.t1 MTR_1g052225 35.583 163 55 6 82 244 19 131 4.77e-18 80.9
MS.gene55283.t1 MTR_6g046230 38.318 107 58 2 132 230 34 140 6.82e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55283.t1 AT1G14020 70.478 481 131 1 9 489 27 496 0.0 731
MS.gene55283.t1 AT2G03280 67.521 468 134 4 9 475 30 480 0.0 676
MS.gene55283.t1 AT2G03280 63.838 495 134 5 9 475 30 507 0.0 660
MS.gene55283.t1 AT5G15740 58.547 468 186 3 9 475 38 498 0.0 581
MS.gene55283.t1 AT3G02250 57.479 468 191 3 9 475 38 498 0.0 568
MS.gene55283.t1 AT2G37980 47.445 411 209 5 84 492 226 631 6.15e-135 404
MS.gene55283.t1 AT1G22460 47.564 431 207 7 63 477 131 558 1.76e-134 400
MS.gene55283.t1 AT3G54100 46.973 413 207 6 79 484 212 619 4.14e-133 399
MS.gene55283.t1 AT5G35570 47.355 397 202 5 83 477 250 641 1.18e-129 391
MS.gene55283.t1 AT5G01100 47.739 398 200 5 84 477 216 609 9.09e-127 383
MS.gene55283.t1 AT5G64600 46.265 415 198 7 84 483 117 521 1.88e-125 376
MS.gene55283.t1 AT4G38390 44.416 394 207 6 84 476 123 505 5.17e-103 319
MS.gene55283.t1 AT1G76270 44.416 394 203 8 87 478 109 488 1.25e-102 319
MS.gene55283.t1 AT1G20550 41.912 408 221 7 87 492 112 505 2.81e-102 318
MS.gene55283.t1 AT4G16650 44.499 409 203 10 76 477 113 504 8.21e-95 298
MS.gene55283.t1 AT4G16650 44.499 409 203 10 76 477 113 504 8.21e-95 298
MS.gene55283.t1 AT3G26370 38.287 397 217 9 74 451 149 536 3.12e-86 276
MS.gene55283.t1 AT1G04910 38.686 411 234 8 73 477 77 475 6.90e-86 274
MS.gene55283.t1 AT4G24530 37.442 430 220 10 84 477 101 517 1.74e-85 273
MS.gene55283.t1 AT5G65470 35.664 429 225 10 86 476 87 502 7.88e-83 265
MS.gene55283.t1 AT1G38065 37.681 414 226 11 84 476 26 428 1.20e-82 263
MS.gene55283.t1 AT1G38065 37.681 414 226 11 84 476 36 438 1.44e-82 264
MS.gene55283.t1 AT1G62330 35.455 440 228 10 85 478 222 651 1.69e-82 268
MS.gene55283.t1 AT1G11990 39.461 408 221 11 85 476 191 588 5.66e-82 266
MS.gene55283.t1 AT1G38131 37.681 414 226 11 84 476 155 557 3.24e-81 263
MS.gene55283.t1 AT1G11990 36.404 445 220 11 85 476 176 610 6.65e-77 253
MS.gene55283.t1 AT1G14970 35.036 411 240 10 84 478 9 408 2.96e-76 246
MS.gene55283.t1 AT1G14970 35.036 411 240 10 84 478 35 434 7.02e-76 245
MS.gene55283.t1 AT5G63390 38.095 399 227 8 87 479 167 551 7.39e-76 249
MS.gene55283.t1 AT1G29200 37.875 433 222 10 84 477 70 494 7.88e-76 247
MS.gene55283.t1 AT1G29200 37.875 433 222 10 84 477 70 494 7.88e-76 247
MS.gene55283.t1 AT1G35510 35.122 410 243 9 83 478 158 558 1.63e-75 248
MS.gene55283.t1 AT1G14970 34.951 412 241 10 83 478 154 554 8.32e-75 246
MS.gene55283.t1 AT1G29200 37.875 433 222 10 84 477 186 610 9.46e-75 247
MS.gene55283.t1 AT2G01480 36.585 369 212 7 84 436 154 516 1.02e-73 243
MS.gene55283.t1 AT1G29200 37.705 427 219 10 90 477 2 420 1.09e-73 239
MS.gene55283.t1 AT2G01480 36.975 357 206 6 84 424 154 507 4.60e-73 241
MS.gene55283.t1 AT2G44500 33.550 462 271 11 45 483 120 568 2.41e-67 226
MS.gene55283.t1 AT3G07900 34.091 396 249 5 87 480 191 576 2.79e-67 226
MS.gene55283.t1 AT1G52630 33.600 375 221 10 77 445 67 419 1.23e-58 200
MS.gene55283.t1 AT1G52630 31.742 356 209 10 99 445 1 331 1.20e-49 174
MS.gene55283.t1 AT3G03810 34.304 309 186 6 73 366 78 384 1.19e-47 175
MS.gene55283.t1 AT3G03810 34.304 309 186 6 73 366 78 384 1.19e-47 175
MS.gene55283.t1 AT3G26370 38.636 220 122 6 74 283 149 365 1.28e-43 159
MS.gene55283.t1 AT3G30300 32.602 319 183 10 75 366 82 395 1.12e-42 161
MS.gene55283.t1 AT3G30300 32.602 319 183 10 75 366 82 395 1.12e-42 161
MS.gene55283.t1 AT2G44500 34.247 292 163 8 45 313 120 405 1.53e-36 140

Find 102 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAGATTCTGCCACTTTA+TGG 0.102351 5.2:-31706237 MS.gene55283:intron
ACTCCTCAAATTGAGAATTT+AGG 0.103676 5.2:-31706102 MS.gene55283:CDS
TGGCATTCACATTTCATTTC+TGG 0.140172 5.2:-31708723 MS.gene55283:CDS
CTCCTCAAATTGAGAATTTA+GGG 0.207048 5.2:-31706101 MS.gene55283:CDS
ATTGCAGCTGGTGAGATTTA+TGG 0.210044 5.2:-31705112 MS.gene55283:CDS
AGCTTGATAAGACATCATTT+TGG 0.262663 5.2:-31707582 MS.gene55283:CDS
CCATCTGCGACGAGTGATTC+TGG 0.265960 5.2:+31704808 None:intergenic
AGGGTATACGTTTGAGGTTT+TGG 0.275369 5.2:-31708815 MS.gene55283:CDS
TTTGCAATTTCAGGTGAAAA+AGG 0.287257 5.2:-31704865 MS.gene55283:intron
GTTCTTCGAGCCTTAGGTTT+TGG 0.287595 5.2:-31705154 MS.gene55283:CDS
GGCATTCACATTTCATTTCT+GGG 0.303223 5.2:-31708722 MS.gene55283:CDS
CGCCCTAAATTCTCAATTTG+AGG 0.307590 5.2:+31706099 None:intergenic
TATTGTTCTTTGGATTTGTT+TGG 0.312689 5.2:-31708772 MS.gene55283:CDS
AGAACTAAGGCCGCCTCTTC+TGG 0.312939 5.2:+31705172 None:intergenic
TGTGTTCAAGTATTGTTCTT+TGG 0.316418 5.2:-31708782 MS.gene55283:CDS
AGCATTTCATTGATTCTTTA+CGG 0.323601 5.2:-31707434 MS.gene55283:CDS
ATCATAATGGAACCCTAAAA+TGG 0.324135 5.2:-31704460 MS.gene55283:CDS
AGAAATTGTGATGAGTTTCT+AGG 0.340861 5.2:-31704302 MS.gene55283:CDS
TTGATTCAAGCCACCATTGC+AGG 0.359205 5.2:+31707753 None:intergenic
CAAGTTCATGAAAAGAGAAT+TGG 0.362522 5.2:-31704413 MS.gene55283:CDS
TAGAAATAGTCCTCCTCCTT+TGG 0.381323 5.2:+31704356 None:intergenic
ACCTTTATCCCTACTTATGA+TGG 0.388352 5.2:-31704750 MS.gene55283:CDS
AGCTAACAGGAGGCATCTCC+AGG 0.388940 5.2:+31707349 None:intergenic
GCATTTCATTGATTCTTTAC+GGG 0.393870 5.2:-31707433 MS.gene55283:CDS
GCCTTAGTTCTTCGAGCCTT+AGG 0.411617 5.2:-31705160 MS.gene55283:CDS
TGTTGACAAACTCACAAGTT+GGG 0.416079 5.2:+31705051 None:intergenic
ATGGATATGTTGGCTTTCTC+AGG 0.419212 5.2:-31706015 MS.gene55283:CDS
CTCGTCGCAGATGGCAGCCT+TGG 0.424016 5.2:-31704799 MS.gene55283:CDS
GGCTTTCTCAGGTTGTACTC+AGG 0.430358 5.2:-31706004 MS.gene55283:CDS
TTCATTTCTGGGATTACTAC+TGG 0.431994 5.2:-31708711 MS.gene55283:CDS
CCCATCATAAGTAGGGATAA+AGG 0.444424 5.2:+31704749 None:intergenic
TAGATATGAGATGGATATGT+TGG 0.451284 5.2:-31706025 MS.gene55283:CDS
GATCAGAGGGTATACGTTTG+AGG 0.452447 5.2:-31708821 MS.gene55283:CDS
TCACCAGCTGCAATATATAT+CGG 0.453493 5.2:+31705121 None:intergenic
ATTTAGGGCGAAAATTGATT+CGG 0.453678 5.2:-31706086 MS.gene55283:CDS
TAGTGACAGTGAGTGAACTA+TGG 0.456536 5.2:-31708743 MS.gene55283:CDS
GCTTTCTCAGGTTGTACTCA+GGG 0.467938 5.2:-31706003 MS.gene55283:CDS
ACCTTGTGCTTTCCATAAAG+TGG 0.477022 5.2:+31706225 None:intergenic
CTTGGAGGAAGAAAAGTAAT+CGG 0.481816 5.2:+31708615 None:intergenic
TTTCTAAGAGTTTCCTGCAA+TGG 0.482508 5.2:-31707766 MS.gene55283:CDS
TTGGTTGATATGCATCATAA+TGG 0.483990 5.2:-31704473 MS.gene55283:CDS
AGAAATGGAGGTTAGATCAG+AGG 0.484479 5.2:-31708835 None:intergenic
ACAGGAAATTATACAAGTAA+TGG 0.485707 5.2:-31707790 MS.gene55283:intron
ACCTAAGGCTCGAAGAACTA+AGG 0.487906 5.2:+31705159 None:intergenic
TGGAGATGCCTCCTGTTAGC+TGG 0.488439 5.2:-31707347 MS.gene55283:CDS
CTAAGAGTTTCCTGCAATGG+TGG 0.489996 5.2:-31707763 MS.gene55283:CDS
TCAGGTATGCATTCCCTTGG+TGG 0.491881 5.2:-31705252 MS.gene55283:intron
CTAAGATGCAGTGCCACAAA+AGG 0.492255 5.2:+31706045 None:intergenic
GCCATGTTCCCATCATAAGT+AGG 0.492805 5.2:+31704741 None:intergenic
AATGATGTCTTATCAAGCTC+TGG 0.501078 5.2:+31707586 None:intergenic
GAGGAGTGAATTTAATAGCC+TGG 0.502925 5.2:+31706118 None:intergenic
AGGAGATAATTTCTGAAGAG+AGG 0.503455 5.2:-31705222 MS.gene55283:CDS
CCATGTTCCCATCATAAGTA+GGG 0.511468 5.2:+31704742 None:intergenic
GAAATGGAGGTTAGATCAGA+GGG 0.517232 5.2:-31708834 MS.gene55283:CDS
AATTCAGGTATGCATTCCCT+TGG 0.517365 5.2:-31705255 MS.gene55283:intron
ATTCCCTTGGTGGAGAGAAA+AGG 0.524582 5.2:-31705242 MS.gene55283:CDS
GCCGCCTCTTCTGGTGTCAA+AGG 0.536521 5.2:+31705181 None:intergenic
GATTCGGATGCTTCACGAGA+AGG 0.536968 5.2:-31706070 MS.gene55283:CDS
CCTTTATCCCTACTTATGAT+GGG 0.537062 5.2:-31704749 MS.gene55283:CDS
AGTAGGGATAAAGGTGTCAC+TGG 0.538681 5.2:+31704758 None:intergenic
CAGGTGTCGTGTCAATTACC+AGG 0.539397 5.2:-31706136 MS.gene55283:CDS
CCAGAATCACTCGTCGCAGA+TGG 0.542778 5.2:-31704808 MS.gene55283:CDS
TTCTGAAGAGAGGAGATCAC+AGG 0.544928 5.2:-31705212 MS.gene55283:CDS
CCCTACTTATGATGGGAACA+TGG 0.557915 5.2:-31704742 MS.gene55283:CDS
CTGAGTTTCTGTAGATCAAG+TGG 0.559172 5.2:+31706156 None:intergenic
ATTCGGATGCTTCACGAGAA+GGG 0.561013 5.2:-31706069 MS.gene55283:CDS
GGAAGAAAAGTAATCGGAGG+AGG 0.568342 5.2:+31708621 None:intergenic
CCGAGGAACTCAAAAGATTG+AGG 0.570538 5.2:-31705963 MS.gene55283:intron
TACTGAAACCATAAAATCCA+AGG 0.577828 5.2:+31704782 None:intergenic
TGGGAACATGGCAAAACTTG+TGG 0.580054 5.2:-31704730 MS.gene55283:CDS
CACTTGATCTACAGAAACTC+AGG 0.581030 5.2:-31706155 MS.gene55283:CDS
ACACCGATATATATTGCAGC+TGG 0.586158 5.2:-31705124 MS.gene55283:CDS
TCCTTTGACACCAGAAGAGG+CGG 0.587100 5.2:-31705182 MS.gene55283:CDS
AGAGAATTGGACAGCCAACT+CGG 0.589262 5.2:-31704400 MS.gene55283:CDS
GATGCACGTTTAGCAAATAA+CGG 0.597330 5.2:-31706183 MS.gene55283:CDS
TGTCTCCCTACCAAAACCTA+AGG 0.604346 5.2:+31705144 None:intergenic
AGATTTATGGCGGTGAACGT+AGG 0.606142 5.2:-31705099 MS.gene55283:CDS
TATAATCGACAGACCAAAGG+AGG 0.606405 5.2:-31704369 MS.gene55283:CDS
AAATGGCACGAGTTTGCTGA+TGG 0.607123 5.2:-31704443 MS.gene55283:CDS
AACTTGTGGAAGGCCATCGA+AGG 0.608718 5.2:-31704716 MS.gene55283:intron
AACATGGCAAAACTTGTGGA+AGG 0.609196 5.2:-31704726 MS.gene55283:CDS
ACTGCATCTTAGATATGAGA+TGG 0.612989 5.2:-31706034 MS.gene55283:CDS
ACATAGACACTCGTGAGGGT+TGG 0.612994 5.2:+31704331 None:intergenic
GGGTAAATACATACCTTCGA+TGG 0.613673 5.2:+31704703 None:intergenic
GTTGACAAACTCACAAGTTG+GGG 0.614088 5.2:+31705052 None:intergenic
ATGTCCTTTGACACCAGAAG+AGG 0.616187 5.2:-31705185 MS.gene55283:CDS
TTGCTCAGAGAAAGAAGCCG+AGG 0.622924 5.2:-31705980 MS.gene55283:CDS
CTTGAATCAAATGCGTGCTG+CGG 0.623967 5.2:-31707740 MS.gene55283:intron
AGTTATAATCGACAGACCAA+AGG 0.626511 5.2:-31704372 MS.gene55283:CDS
TCATTCGACCAGCTAACAGG+AGG 0.632562 5.2:+31707339 None:intergenic
GCCACTTTATGGAAAGCACA+AGG 0.636864 5.2:-31706226 MS.gene55283:CDS
CCCTCACGAGTGTCTATGTG+AGG 0.640114 5.2:-31704327 MS.gene55283:CDS
TAAATATGGATATTCTACCC+TGG 0.641166 5.2:-31707367 MS.gene55283:CDS
AATCGACAGACCAAAGGAGG+AGG 0.642909 5.2:-31704366 MS.gene55283:CDS
TGAGTTTCTGTAGATCAAGT+GGG 0.659206 5.2:+31706157 None:intergenic
TCCTCACATAGACACTCGTG+AGG 0.666757 5.2:+31704326 None:intergenic
CCTCACATAGACACTCGTGA+GGG 0.677641 5.2:+31704327 None:intergenic
GCTAACAGGAGGCATCTCCA+GGG 0.682429 5.2:+31707350 None:intergenic
TCTGAAGAGAGGAGATCACA+GGG 0.690255 5.2:-31705211 MS.gene55283:CDS
GGAGGAAGAAAAGTAATCGG+AGG 0.701615 5.2:+31708618 None:intergenic
GCAGCTGGTGAGATTTATGG+CGG 0.732613 5.2:-31705109 MS.gene55283:CDS
GGTATTTCAGATATGTGACA+TGG 0.740956 5.2:-31707647 MS.gene55283:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGATTGAAAAAAAA+AGG + chr5.2:31706345-31706364 None:intergenic 10.0%
!!! TTATTATCATTATTTTGTTT+AGG + chr5.2:31704451-31704470 None:intergenic 10.0%
!! GATCAATTAATTTATATCAA+AGG + chr5.2:31704594-31704613 None:intergenic 15.0%
!!! AAACAGATAAATTTTAGAAT+AGG + chr5.2:31705403-31705422 None:intergenic 15.0%
!!! ATAAATCAATTTTCGATAAA+AGG - chr5.2:31705001-31705020 MS.gene55283:intron 15.0%
!!! ATAGATATCTAATTTTTGTA+AGG + chr5.2:31707795-31707814 None:intergenic 15.0%
!!! TAAATCAATTTTCGATAAAA+GGG - chr5.2:31705002-31705021 MS.gene55283:intron 15.0%
!!! TAGATATCTAATTTTTGTAA+GGG + chr5.2:31707794-31707813 None:intergenic 15.0%
!!! TATTCTAAAATTTATCTGTT+TGG - chr5.2:31705402-31705421 MS.gene55283:intron 15.0%
!! AAAACATATCTGATACAAAA+AGG + chr5.2:31704544-31704563 None:intergenic 20.0%
!! AACTATCATTTACTAATATG+AGG + chr5.2:31707287-31707306 None:intergenic 20.0%
!! AAGATGTACCTTATTAAAAA+GGG + chr5.2:31705041-31705060 None:intergenic 20.0%
!! AATAATACTTATCGATGTAT+GGG - chr5.2:31705201-31705220 MS.gene55283:CDS 20.0%
!! AGCATATAATCAAGTAAATA+AGG + chr5.2:31707737-31707756 None:intergenic 20.0%
!! CATGAAGAAATTTATAGTTA+TGG - chr5.2:31706672-31706691 MS.gene55283:intron 20.0%
!! GCATATAATCAAGTAAATAA+GGG + chr5.2:31707736-31707755 None:intergenic 20.0%
!! TAAGATGTACCTTATTAAAA+AGG + chr5.2:31705042-31705061 None:intergenic 20.0%
!! TACTAAAAACACACAATAAA+TGG + chr5.2:31707622-31707641 None:intergenic 20.0%
!! TGGAATGAAATAGAATTATA+GGG - chr5.2:31706099-31706118 MS.gene55283:CDS 20.0%
!!! CAAGATTGTTTTTCTAAAAT+CGG + chr5.2:31708591-31708610 None:intergenic 20.0%
!!! CTGTTTTTATTTTCTTTTTG+CGG - chr5.2:31707426-31707445 MS.gene55283:CDS 20.0%
!!! GTATTTTTATGTTTCATGTT+TGG - chr5.2:31707167-31707186 MS.gene55283:intron 20.0%
!!! TGTTGGTAAATTTTGTTTTT+TGG - chr5.2:31704716-31704735 MS.gene55283:intron 20.0%
!!! TTGTACAAATTTTTTATGAC+AGG - chr5.2:31707649-31707668 MS.gene55283:intron 20.0%
!!! TTTAGACTTTAGAGATATTA+AGG - chr5.2:31707378-31707397 MS.gene55283:CDS 20.0%
!!! TTTTAGAAAAACAATCTTGT+TGG - chr5.2:31708592-31708611 MS.gene55283:intron 20.0%
!!! TTTTATTTTCTTGCTCATTT+TGG - chr5.2:31705264-31705283 MS.gene55283:intron 20.0%
! AAAAAGTTTAGCGGTAAATA+TGG - chr5.2:31705727-31705746 MS.gene55283:intron 25.0%
! AAAATCAGTGTTATCAATAG+TGG + chr5.2:31706465-31706484 None:intergenic 25.0%
! AAATAAAGGAAAGCCAAAAA+TGG + chr5.2:31706434-31706453 None:intergenic 25.0%
! AAATGTTTCGCAAAAGTAAA+AGG + chr5.2:31707554-31707573 None:intergenic 25.0%
! AAGCTTAAATACTCATTTAG+TGG - chr5.2:31705435-31705454 MS.gene55283:intron 25.0%
! AATAAAGGAAAGCCAAAAAT+GGG + chr5.2:31706433-31706452 None:intergenic 25.0%
! AATGTTTCGCAAAAGTAAAA+GGG + chr5.2:31707553-31707572 None:intergenic 25.0%
! ACAGGAAATTATACAAGTAA+TGG - chr5.2:31705318-31705337 MS.gene55283:intron 25.0%
! AGTGTAAATTGTATTTGTGT+TGG - chr5.2:31704699-31704718 MS.gene55283:intron 25.0%
! ATACCTATCCTCAAAATTAA+TGG + chr5.2:31705169-31705188 None:intergenic 25.0%
! ATGTTGCAGACAAATAAAAA+GGG + chr5.2:31706321-31706340 None:intergenic 25.0%
! CAATAATACTTATCGATGTA+TGG - chr5.2:31705200-31705219 MS.gene55283:CDS 25.0%
! CATGAACAAGTTTACTAAAT+AGG + chr5.2:31706543-31706562 None:intergenic 25.0%
! GAATCTTAGTTTCGTTATTA+GGG - chr5.2:31706027-31706046 MS.gene55283:CDS 25.0%
! GTCGAATGAAAAATATTACT+TGG - chr5.2:31705783-31705802 MS.gene55283:intron 25.0%
! GTGGAATGAAATAGAATTAT+AGG - chr5.2:31706098-31706117 MS.gene55283:CDS 25.0%
! TAAATACTCATTTAGTGGTA+TGG - chr5.2:31705440-31705459 MS.gene55283:intron 25.0%
! TGAATCTTAGTTTCGTTATT+AGG - chr5.2:31706026-31706045 MS.gene55283:CDS 25.0%
!! AAATGTTGCCATTAATTTTG+AGG - chr5.2:31705158-31705177 MS.gene55283:CDS 25.0%
!! CAGTTTTCTAATAAGACAAT+AGG + chr5.2:31706175-31706194 None:intergenic 25.0%
!! CATTTTTATGCTCATTGTTT+GGG - chr5.2:31708094-31708113 MS.gene55283:intron 25.0%
!! CTGATTTTCAAAGAAGTTAT+GGG - chr5.2:31706477-31706496 MS.gene55283:intron 25.0%
!! CTTATTAAAAAGGGTATATC+CGG + chr5.2:31705032-31705051 None:intergenic 25.0%
!! TATTAAGGCTCTTTTACTTT+TGG - chr5.2:31707393-31707412 MS.gene55283:CDS 25.0%
!! TATTGTGATTTAAGATTCTG+TGG - chr5.2:31707766-31707785 MS.gene55283:CDS 25.0%
!! TATTGTTCTTTGGATTTGTT+TGG - chr5.2:31704336-31704355 MS.gene55283:CDS 25.0%
!! TATTTACCGCTAAACTTTTT+AGG + chr5.2:31705727-31705746 None:intergenic 25.0%
!! TTATTAAAAAGGGTATATCC+GGG + chr5.2:31705031-31705050 None:intergenic 25.0%
!! TTCTAGCTATTTGCAATTTA+AGG - chr5.2:31705860-31705879 MS.gene55283:intron 25.0%
!! TTCTTTTTGCAGTAATTTTG+AGG - chr5.2:31705636-31705655 MS.gene55283:intron 25.0%
!!! AACACAACTTTAGAATGATA+TGG + chr5.2:31705613-31705632 None:intergenic 25.0%
!!! AACATGGCTTTTATTTTGAA+AGG + chr5.2:31706288-31706307 None:intergenic 25.0%
!!! AATTTGAAATGCTGATTCTA+GGG - chr5.2:31704871-31704890 MS.gene55283:intron 25.0%
!!! ACTGATTTTCAAAGAAGTTA+TGG - chr5.2:31706476-31706495 MS.gene55283:intron 25.0%
!!! AGCATTTCATTGATTCTTTA+CGG - chr5.2:31705674-31705693 MS.gene55283:intron 25.0%
!!! CTTGTTTTAATGTTGAATTG+TGG - chr5.2:31704746-31704765 MS.gene55283:CDS 25.0%
!!! TAATTTGAAATGCTGATTCT+AGG - chr5.2:31704870-31704889 MS.gene55283:intron 25.0%
!!! TTAATTTTGAGGATAGGTAT+AGG - chr5.2:31705169-31705188 MS.gene55283:CDS 25.0%
!!! TTTTGAAAGGCTTACATATA+TGG + chr5.2:31706275-31706294 None:intergenic 25.0%
AATAACATGTCAGCAACATT+AGG + chr5.2:31708429-31708448 None:intergenic 30.0%
AATAGGTCATGTTCTTTAAC+AGG + chr5.2:31706250-31706269 None:intergenic 30.0%
AATCTTGTTGGATCGAAAAA+AGG - chr5.2:31708604-31708623 MS.gene55283:intron 30.0%
ACAATGAGCATAAAAATGGA+AGG + chr5.2:31708092-31708111 None:intergenic 30.0%
ACTCCTCAAATTGAGAATTT+AGG - chr5.2:31707006-31707025 MS.gene55283:intron 30.0%
AGAAATTGTGATGAGTTTCT+AGG - chr5.2:31708806-31708825 MS.gene55283:CDS 30.0%
AGAGTTCCTAAAAAGTTTAG+CGG - chr5.2:31705718-31705737 MS.gene55283:intron 30.0%
ATAACATGTCAGCAACATTA+GGG + chr5.2:31708428-31708447 None:intergenic 30.0%
ATAAGACAATAGGTCATGTT+TGG + chr5.2:31706165-31706184 None:intergenic 30.0%
ATTGTTCTTGCACTCATTAA+TGG - chr5.2:31708137-31708156 MS.gene55283:intron 30.0%
CAACTAATCTCATATCCAAA+AGG + chr5.2:31707331-31707350 None:intergenic 30.0%
CAAGTTCATGAAAAGAGAAT+TGG - chr5.2:31708695-31708714 MS.gene55283:CDS 30.0%
CATGTTGCAGACAAATAAAA+AGG + chr5.2:31706322-31706341 None:intergenic 30.0%
CCAAACAATGAGCATAAAAA+TGG + chr5.2:31708096-31708115 None:intergenic 30.0%
CTCCTCAAATTGAGAATTTA+GGG - chr5.2:31707007-31707026 MS.gene55283:intron 30.0%
GATATTACAAAATAACGACC+AGG - chr5.2:31705068-31705087 MS.gene55283:CDS 30.0%
TAAATATGGATATTCTACCC+TGG - chr5.2:31705741-31705760 MS.gene55283:intron 30.0%
TACTGAAACCATAAAATCCA+AGG + chr5.2:31708329-31708348 None:intergenic 30.0%
TAGATATGAGATGGATATGT+TGG - chr5.2:31707083-31707102 MS.gene55283:intron 30.0%
TCAGAACAAAGTATATACCT+AGG + chr5.2:31705558-31705577 None:intergenic 30.0%
TGAAAAATATTACTTGGAGC+AGG - chr5.2:31705789-31705808 MS.gene55283:intron 30.0%
TGAAAACAAGATAGCATTGT+GGG + chr5.2:31706405-31706424 None:intergenic 30.0%
TGTTCTATAGTTGTTCTCTA+GGG - chr5.2:31704839-31704858 MS.gene55283:CDS 30.0%
TTAGAGTCAAGAAACTAACT+TGG + chr5.2:31704514-31704533 None:intergenic 30.0%
TTTCAAAGTTCCAATCAAGT+TGG + chr5.2:31706608-31706627 None:intergenic 30.0%
! AAGTCTTTGAAAACAGGAAA+TGG + chr5.2:31707486-31707505 None:intergenic 30.0%
! AGCTTGATAAGACATCATTT+TGG - chr5.2:31705526-31705545 MS.gene55283:intron 30.0%
! ATAATTTCCTGTAGTTTGTC+AGG + chr5.2:31705310-31705329 None:intergenic 30.0%
! ATCATAATGGAACCCTAAAA+TGG - chr5.2:31708648-31708667 MS.gene55283:CDS 30.0%
! ATTTAGGGCGAAAATTGATT+CGG - chr5.2:31707022-31707041 MS.gene55283:intron 30.0%
! CGGATATACCCTTTTTAATA+AGG - chr5.2:31705030-31705049 MS.gene55283:intron 30.0%
! GCTTGATAAGACATCATTTT+GGG - chr5.2:31705527-31705546 MS.gene55283:intron 30.0%
! GGTGTTATGTGACTTATATT+TGG - chr5.2:31704641-31704660 MS.gene55283:intron 30.0%
! TATTAAAAAGGGTATATCCG+GGG + chr5.2:31705030-31705049 None:intergenic 30.0%
! TGATTCTTGACCTATGTTTT+TGG - chr5.2:31705906-31705925 MS.gene55283:intron 30.0%
! TGTACAAAGTCTTTGAAAAC+AGG + chr5.2:31707492-31707511 None:intergenic 30.0%
! TGTGTTCAAGTATTGTTCTT+TGG - chr5.2:31704326-31704345 MS.gene55283:CDS 30.0%
! TTGGTTGATATGCATCATAA+TGG - chr5.2:31708635-31708654 MS.gene55283:CDS 30.0%
! TTTGCAATTTCAGGTGAAAA+AGG - chr5.2:31708243-31708262 MS.gene55283:intron 30.0%
!! ACAACTTTAGAATGATATGG+AGG + chr5.2:31705610-31705629 None:intergenic 30.0%
!! CAACTAAAATGAGTTGCTTT+TGG - chr5.2:31706719-31706738 MS.gene55283:intron 30.0%
!! CCATTTTTATGCTCATTGTT+TGG - chr5.2:31708093-31708112 MS.gene55283:intron 30.0%
!! GACTTATATTTGGTGTTAGA+TGG - chr5.2:31704651-31704670 MS.gene55283:intron 30.0%
!! GCATTTCATTGATTCTTTAC+GGG - chr5.2:31705675-31705694 MS.gene55283:intron 30.0%
!! GCTTTTGTGTATTGTTGATT+AGG - chr5.2:31704620-31704639 MS.gene55283:intron 30.0%
!! TAGTGGATTGCAGAAAATAA+AGG + chr5.2:31706448-31706467 None:intergenic 30.0%
!! TTGCCATTAATTTTGAGGAT+AGG - chr5.2:31705163-31705182 MS.gene55283:CDS 30.0%
!!! ACCTATGTTTTTGGATAGTA+TGG - chr5.2:31705915-31705934 MS.gene55283:intron 30.0%
AAAGGGAATAAAGCAGAACA+TGG + chr5.2:31706304-31706323 None:intergenic 35.0%
AACAGATTGAAAACAAGTGG+TGG - chr5.2:31707673-31707692 MS.gene55283:intron 35.0%
AATGATGTCTTATCAAGCTC+TGG + chr5.2:31705525-31705544 None:intergenic 35.0%
ACCTTTATCCCTACTTATGA+TGG - chr5.2:31708358-31708377 MS.gene55283:intron 35.0%
ACTGCATCTTAGATATGAGA+TGG - chr5.2:31707074-31707093 MS.gene55283:intron 35.0%
AGCAGAAAAGACTGAAAATG+AGG + chr5.2:31708201-31708220 None:intergenic 35.0%
AGTTATAATCGACAGACCAA+AGG - chr5.2:31708736-31708755 MS.gene55283:CDS 35.0%
ATCCTGTTATTCAGAAACAG+AGG + chr5.2:31707259-31707278 None:intergenic 35.0%
ATGAGGATCATTGAGAGAAA+AGG + chr5.2:31708184-31708203 None:intergenic 35.0%
ATGTTCTCATCATATATGCC+TGG + chr5.2:31705089-31705108 None:intergenic 35.0%
ATGTTGACAAACTCACAAGT+TGG + chr5.2:31708061-31708080 None:intergenic 35.0%
CATGCTTCTGTCATTAATTG+AGG - chr5.2:31707216-31707235 MS.gene55283:intron 35.0%
CCTTTATCCCTACTTATGAT+GGG - chr5.2:31708359-31708378 MS.gene55283:intron 35.0%
CTGTTCTATAGTTGTTCTCT+AGG - chr5.2:31704838-31704857 MS.gene55283:CDS 35.0%
CTTGGAGGAAGAAAAGTAAT+CGG + chr5.2:31704496-31704515 None:intergenic 35.0%
GACTTATTTCAACTGCTATG+CGG - chr5.2:31706366-31706385 MS.gene55283:intron 35.0%
GATGCACGTTTAGCAAATAA+CGG - chr5.2:31706925-31706944 MS.gene55283:intron 35.0%
GCATACCTGAATTACACAAA+GGG + chr5.2:31707846-31707865 None:intergenic 35.0%
GCCATACTATCCAAAAACAT+AGG + chr5.2:31705919-31705938 None:intergenic 35.0%
GGAAACAGATTGAAAACAAG+TGG - chr5.2:31707670-31707689 MS.gene55283:intron 35.0%
GGCATTCACATTTCATTTCT+GGG - chr5.2:31704386-31704405 MS.gene55283:CDS 35.0%
GGCTTACATATATGGTGAAT+AGG + chr5.2:31706267-31706286 None:intergenic 35.0%
GGTATTTCAGATATGTGACA+TGG - chr5.2:31705461-31705480 MS.gene55283:intron 35.0%
GTCATTAATTGAGGTTGAGA+GGG - chr5.2:31707225-31707244 MS.gene55283:intron 35.0%
GTGAAAACAAGATAGCATTG+TGG + chr5.2:31706406-31706425 None:intergenic 35.0%
GTTATGGTGACTACTAGTAT+TGG - chr5.2:31706688-31706707 MS.gene55283:intron 35.0%
TAACAGTGTAAGTGCATTGT+TGG - chr5.2:31708518-31708537 MS.gene55283:intron 35.0%
TCACCAGCTGCAATATATAT+CGG + chr5.2:31707990-31708009 None:intergenic 35.0%
TGAGTTTCTGTAGATCAAGT+GGG + chr5.2:31706954-31706973 None:intergenic 35.0%
TGCATACCTGAATTACACAA+AGG + chr5.2:31707847-31707866 None:intergenic 35.0%
TGGCATTCACATTTCATTTC+TGG - chr5.2:31704385-31704404 MS.gene55283:CDS 35.0%
TGTCATTAATTGAGGTTGAG+AGG - chr5.2:31707224-31707243 MS.gene55283:intron 35.0%
TGTTGACAAACTCACAAGTT+GGG + chr5.2:31708060-31708079 None:intergenic 35.0%
TTCTTGCACTCATTAATGGT+TGG - chr5.2:31708141-31708160 MS.gene55283:intron 35.0%
TTGAATCAACTAGCAGAAAC+TGG + chr5.2:31706070-31706089 None:intergenic 35.0%
TTTGTCCCTTTGTGTAATTC+AGG - chr5.2:31707838-31707857 MS.gene55283:intron 35.0%
! AGCAGGTGTGTTTCTTTTAT+GGG - chr5.2:31705806-31705825 MS.gene55283:intron 35.0%
! AGGAGATAATTTCTGAAGAG+AGG - chr5.2:31707886-31707905 MS.gene55283:intron 35.0%
! AGTTGATTCAATGGCAATAG+TGG - chr5.2:31706079-31706098 MS.gene55283:CDS 35.0%
! ATTATAACTTTTCGCCGAGT+TGG + chr5.2:31708725-31708744 None:intergenic 35.0%
! GTTTCTGCTAGTTGATTCAA+TGG - chr5.2:31706070-31706089 MS.gene55283:CDS 35.0%
! GTTTTCACATAGCCCATTTT+TGG - chr5.2:31706418-31706437 MS.gene55283:intron 35.0%
! TGTGGATTGTGAAATCTGTT+GGG - chr5.2:31704764-31704783 MS.gene55283:CDS 35.0%
! TTGTGGATTGTGAAATCTGT+TGG - chr5.2:31704763-31704782 MS.gene55283:CDS 35.0%
! TTTCTAAGAGTTTCCTGCAA+TGG - chr5.2:31705342-31705361 MS.gene55283:intron 35.0%
! TTTGTCAATGCTTTTCAGCA+CGG - chr5.2:31705956-31705975 MS.gene55283:intron 35.0%
!! AAGTTCCAATCAAGTTGGAA+AGG + chr5.2:31706603-31706622 None:intergenic 35.0%
!! ATCCTCTGTTTCTGAATAAC+AGG - chr5.2:31707254-31707273 MS.gene55283:intron 35.0%
!! TAACTAATTTGTTCGTCTGC+AGG - chr5.2:31708561-31708580 MS.gene55283:intron 35.0%
!! TCATGTTTGGCTCTATGTAT+CGG - chr5.2:31707180-31707199 MS.gene55283:intron 35.0%
!! TTCATTTCTGGGATTACTAC+TGG - chr5.2:31704397-31704416 MS.gene55283:CDS 35.0%
!!! AAATGAGTTGCTTTTGGTGT+AGG - chr5.2:31706725-31706744 MS.gene55283:intron 35.0%
!!! CTACTTTTTGGAACCTATGT+TGG + chr5.2:31706755-31706774 None:intergenic 35.0%
AACATGGCAAAACTTGTGGA+AGG - chr5.2:31708382-31708401 MS.gene55283:intron 40.0%
AATTCAGGTATGCATTCCCT+TGG - chr5.2:31707853-31707872 MS.gene55283:intron 40.0%
AATTGAGGTTGAGAGGGATT+TGG - chr5.2:31707231-31707250 MS.gene55283:intron 40.0%
ACACCGATATATATTGCAGC+TGG - chr5.2:31707984-31708003 MS.gene55283:intron 40.0%
ACCTTGTGCTTTCCATAAAG+TGG + chr5.2:31706886-31706905 None:intergenic 40.0%
ACTAGCAGAAACTGGAATAG+CGG + chr5.2:31706062-31706081 None:intergenic 40.0%
ATTGCAGCTGGTGAGATTTA+TGG - chr5.2:31707996-31708015 MS.gene55283:intron 40.0%
CACTTGATCTACAGAAACTC+AGG - chr5.2:31706953-31706972 MS.gene55283:intron 40.0%
CCAAAAAGTAGCACTTCACT+GGG - chr5.2:31706764-31706783 MS.gene55283:intron 40.0%
CCATGTTCCCATCATAAGTA+GGG + chr5.2:31708369-31708388 None:intergenic 40.0%
CCCATCATAAGTAGGGATAA+AGG + chr5.2:31708362-31708381 None:intergenic 40.0%
CGCCCTAAATTCTCAATTTG+AGG + chr5.2:31707012-31707031 None:intergenic 40.0%
CTGAGTTTCTGTAGATCAAG+TGG + chr5.2:31706955-31706974 None:intergenic 40.0%
CTTTCTGCGTTTGCAATTTC+AGG - chr5.2:31708234-31708253 MS.gene55283:intron 40.0%
GAGGAGTGAATTTAATAGCC+TGG + chr5.2:31706993-31707012 None:intergenic 40.0%
GAGTCAAGAAACTAACTTGG+AGG + chr5.2:31704511-31704530 None:intergenic 40.0%
GGGTAAATACATACCTTCGA+TGG + chr5.2:31708408-31708427 None:intergenic 40.0%
GTTGACAAACTCACAAGTTG+GGG + chr5.2:31708059-31708078 None:intergenic 40.0%
TAGAAATAGTCCTCCTCCTT+TGG + chr5.2:31708755-31708774 None:intergenic 40.0%
TAGTGACAGTGAGTGAACTA+TGG - chr5.2:31704365-31704384 MS.gene55283:CDS 40.0%
TATAATCGACAGACCAAAGG+AGG - chr5.2:31708739-31708758 MS.gene55283:CDS 40.0%
TCCAAAAAGTAGCACTTCAC+TGG - chr5.2:31706763-31706782 MS.gene55283:intron 40.0%
TCGAAAAAAGGTCGTGGAAT+TGG - chr5.2:31708616-31708635 MS.gene55283:CDS 40.0%
TCTTTGACCTGACAAACTAC+AGG - chr5.2:31705300-31705319 MS.gene55283:intron 40.0%
TGTGTCCTTTCCAACTTGAT+TGG - chr5.2:31706595-31706614 MS.gene55283:intron 40.0%
TTATCGATGTATGGGTCTGA+TGG - chr5.2:31705209-31705228 MS.gene55283:CDS 40.0%
! GAGCAGGTGTGTTTCTTTTA+TGG - chr5.2:31705805-31705824 MS.gene55283:intron 40.0%
! GCTCTGATAGAGAAACCTTT+TGG - chr5.2:31707313-31707332 MS.gene55283:intron 40.0%
! TTTTCATTCGACCAGCTAAC+AGG + chr5.2:31705775-31705794 None:intergenic 40.0%
! TTTTCGATAAAAGGGATCCC+CGG - chr5.2:31705010-31705029 MS.gene55283:intron 40.0%
!! AGGGTATACGTTTGAGGTTT+TGG - chr5.2:31704293-31704312 MS.gene55283:CDS 40.0%
!! ATGGATATGTTGGCTTTCTC+AGG - chr5.2:31707093-31707112 MS.gene55283:intron 40.0%
!! GAAAAGGCATCTTTCAGATC+AGG + chr5.2:31708168-31708187 None:intergenic 40.0%
!!! AGCAAACTCGTGCCATTTTA+GGG + chr5.2:31708663-31708682 None:intergenic 40.0%
!!! CCTCAATCTTTTGAGTTCCT+CGG + chr5.2:31707148-31707167 None:intergenic 40.0%
ACAGACACATACAACCATCG+TGG + chr5.2:31706568-31706587 None:intergenic 45.0%
ACCTAAGGCTCGAAGAACTA+AGG + chr5.2:31707952-31707971 None:intergenic 45.0%
AGAGAATTGGACAGCCAACT+CGG - chr5.2:31708708-31708727 MS.gene55283:CDS 45.0%
AGATTTATGGCGGTGAACGT+AGG - chr5.2:31708009-31708028 MS.gene55283:intron 45.0%
ATGTCCTTTGACACCAGAAG+AGG - chr5.2:31707923-31707942 MS.gene55283:intron 45.0%
ATTCCCTTGGTGGAGAGAAA+AGG - chr5.2:31707866-31707885 MS.gene55283:intron 45.0%
ATTCGGATGCTTCACGAGAA+GGG - chr5.2:31707039-31707058 MS.gene55283:intron 45.0%
CAAACGCAGAAAGTCAGATG+TGG + chr5.2:31708227-31708246 None:intergenic 45.0%
CAGTGTAGAGTCGATAGTGT+TGG + chr5.2:31706854-31706873 None:intergenic 45.0%
CCGAGGAACTCAAAAGATTG+AGG - chr5.2:31707145-31707164 MS.gene55283:intron 45.0%
CTAAGAGTTTCCTGCAATGG+TGG - chr5.2:31705345-31705364 MS.gene55283:intron 45.0%
CTAAGATGCAGTGCCACAAA+AGG + chr5.2:31707066-31707085 None:intergenic 45.0%
CTTGAATCAAATGCGTGCTG+CGG - chr5.2:31705368-31705387 MS.gene55283:intron 45.0%
GCCATGTTCCCATCATAAGT+AGG + chr5.2:31708370-31708389 None:intergenic 45.0%
GGAAGAAAAGTAATCGGAGG+AGG + chr5.2:31704490-31704509 None:intergenic 45.0%
GGAGGAAGAAAAGTAATCGG+AGG + chr5.2:31704493-31704512 None:intergenic 45.0%
GTTGGATCGAAAAAAGGTCG+TGG - chr5.2:31708610-31708629 MS.gene55283:intron 45.0%
TCTGAAGAGAGGAGATCACA+GGG - chr5.2:31707897-31707916 MS.gene55283:intron 45.0%
TGGGAACATGGCAAAACTTG+TGG - chr5.2:31708378-31708397 MS.gene55283:intron 45.0%
TGGTGTAGGATAGCCAACAT+AGG - chr5.2:31706739-31706758 MS.gene55283:intron 45.0%
TGTCTCCCTACCAAAACCTA+AGG + chr5.2:31707967-31707986 None:intergenic 45.0%
TTGATTCAAGCCACCATTGC+AGG + chr5.2:31705358-31705377 None:intergenic 45.0%
! AACTTGTTCATGAGCCACGA+TGG - chr5.2:31706551-31706570 MS.gene55283:intron 45.0%
! ATCTCCTTTTCTCTCCACCA+AGG + chr5.2:31707873-31707892 None:intergenic 45.0%
! CATCATTTTGGGCAGATCCT+AGG - chr5.2:31705538-31705557 MS.gene55283:intron 45.0%
! CCCTACTTATGATGGGAACA+TGG - chr5.2:31708366-31708385 MS.gene55283:intron 45.0%
! GATCAGAGGGTATACGTTTG+AGG - chr5.2:31704287-31704306 MS.gene55283:CDS 45.0%
! GATGGCAGCCTTGGATTTTA+TGG - chr5.2:31708318-31708337 MS.gene55283:intron 45.0%
! GCCACTTTATGGAAAGCACA+AGG - chr5.2:31706882-31706901 MS.gene55283:intron 45.0%
! GCTTTCTCAGGTTGTACTCA+GGG - chr5.2:31707105-31707124 MS.gene55283:intron 45.0%
! GTTCTTCGAGCCTTAGGTTT+TGG - chr5.2:31707954-31707973 MS.gene55283:intron 45.0%
! TCTCCTTTTCTCTCCACCAA+GGG + chr5.2:31707872-31707891 None:intergenic 45.0%
! TGTATGGGTCTGATGGATAG+AGG - chr5.2:31705216-31705235 MS.gene55283:CDS 45.0%
! TTCTGAAGAGAGGAGATCAC+AGG - chr5.2:31707896-31707915 MS.gene55283:intron 45.0%
!! AAATGGCACGAGTTTGCTGA+TGG - chr5.2:31708665-31708684 MS.gene55283:CDS 45.0%
!! AGTAGGGATAAAGGTGTCAC+TGG + chr5.2:31708353-31708372 None:intergenic 45.0%
!! CTGCAGATTCTGCCACTTTA+TGG - chr5.2:31706871-31706890 MS.gene55283:intron 45.0%
!! TCGAGCCTTAGGTTTTGGTA+GGG - chr5.2:31707959-31707978 MS.gene55283:intron 45.0%
!! TTCGAGCCTTAGGTTTTGGT+AGG - chr5.2:31707958-31707977 MS.gene55283:intron 45.0%
!!! CAGCAAACTCGTGCCATTTT+AGG + chr5.2:31708664-31708683 None:intergenic 45.0%
!!! CCCAGTGAAGTGCTACTTTT+TGG + chr5.2:31706767-31706786 None:intergenic 45.0%
!! GTATTATAATTAAATAATAA+TGG - chr5.2:31704917-31704936 MS.gene55283:intron 5.0%
AACTTGTGGAAGGCCATCGA+AGG - chr5.2:31708392-31708411 MS.gene55283:intron 50.0%
AATCGACAGACCAAAGGAGG+AGG - chr5.2:31708742-31708761 MS.gene55283:CDS 50.0%
ACATAGACACTCGTGAGGGT+TGG + chr5.2:31708780-31708799 None:intergenic 50.0%
CCTCACATAGACACTCGTGA+GGG + chr5.2:31708784-31708803 None:intergenic 50.0%
CTATGATATAGCGCTACCGC+TGG + chr5.2:31705996-31706015 None:intergenic 50.0%
GATTCGGATGCTTCACGAGA+AGG - chr5.2:31707038-31707057 MS.gene55283:intron 50.0%
GCAGCTGGTGAGATTTATGG+CGG - chr5.2:31707999-31708018 MS.gene55283:intron 50.0%
GGTTGTCAAATAGCAGCCAG+CGG - chr5.2:31705977-31705996 MS.gene55283:CDS 50.0%
TCAGGTATGCATTCCCTTGG+TGG - chr5.2:31707856-31707875 MS.gene55283:intron 50.0%
TCATTCGACCAGCTAACAGG+AGG + chr5.2:31705772-31705791 None:intergenic 50.0%
TCCTCACATAGACACTCGTG+AGG + chr5.2:31708785-31708804 None:intergenic 50.0%
TCCTTTGACACCAGAAGAGG+CGG - chr5.2:31707926-31707945 MS.gene55283:intron 50.0%
TTGCTCAGAGAAAGAAGCCG+AGG - chr5.2:31707128-31707147 MS.gene55283:intron 50.0%
! CAGGTGTCGTGTCAATTACC+AGG - chr5.2:31706972-31706991 MS.gene55283:intron 50.0%
! GCCTTAGTTCTTCGAGCCTT+AGG - chr5.2:31707948-31707967 MS.gene55283:intron 50.0%
! GGCTTTCTCAGGTTGTACTC+AGG - chr5.2:31707104-31707123 MS.gene55283:intron 50.0%
! TCACGAGAAGGGACCTTTTG+TGG - chr5.2:31707050-31707069 MS.gene55283:intron 50.0%
AGAACTAAGGCCGCCTCTTC+TGG + chr5.2:31707939-31707958 None:intergenic 55.0%
CCAGAATCACTCGTCGCAGA+TGG - chr5.2:31708300-31708319 MS.gene55283:intron 55.0%
CCATCTGCGACGAGTGATTC+TGG + chr5.2:31708303-31708322 None:intergenic 55.0%
CCCTCACGAGTGTCTATGTG+AGG - chr5.2:31708781-31708800 MS.gene55283:CDS 55.0%
TGGAGATGCCTCCTGTTAGC+TGG - chr5.2:31705761-31705780 MS.gene55283:intron 55.0%
!! AGCTAACAGGAGGCATCTCC+AGG + chr5.2:31705762-31705781 None:intergenic 55.0%
!! GCTAACAGGAGGCATCTCCA+GGG + chr5.2:31705761-31705780 None:intergenic 55.0%
! GCCGCCTCTTCTGGTGTCAA+AGG + chr5.2:31707930-31707949 None:intergenic 60.0%
CTCGTCGCAGATGGCAGCCT+TGG - chr5.2:31708309-31708328 MS.gene55283:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 31704277 31708853 31704277 ID=MS.gene55283
chr5.2 mRNA 31704277 31708853 31704277 ID=MS.gene55283.t1;Parent=MS.gene55283
chr5.2 exon 31708616 31708853 31708616 ID=MS.gene55283.t1.exon1;Parent=MS.gene55283.t1
chr5.2 CDS 31708616 31708853 31708616 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31707741 31707808 31707741 ID=MS.gene55283.t1.exon2;Parent=MS.gene55283.t1
chr5.2 CDS 31707741 31707808 31707741 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31707571 31707659 31707571 ID=MS.gene55283.t1.exon3;Parent=MS.gene55283.t1
chr5.2 CDS 31707571 31707659 31707571 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31707320 31707482 31707320 ID=MS.gene55283.t1.exon4;Parent=MS.gene55283.t1
chr5.2 CDS 31707320 31707482 31707320 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31705964 31706253 31705964 ID=MS.gene55283.t1.exon5;Parent=MS.gene55283.t1
chr5.2 CDS 31705964 31706253 31705964 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31705066 31705270 31705066 ID=MS.gene55283.t1.exon6;Parent=MS.gene55283.t1
chr5.2 CDS 31705066 31705270 31705066 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31704717 31704874 31704717 ID=MS.gene55283.t1.exon7;Parent=MS.gene55283.t1
chr5.2 CDS 31704717 31704874 31704717 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
chr5.2 exon 31704277 31704547 31704277 ID=MS.gene55283.t1.exon8;Parent=MS.gene55283.t1
chr5.2 CDS 31704277 31704547 31704277 ID=cds.MS.gene55283.t1;Parent=MS.gene55283.t1
Gene Sequence

>MS.gene55283

ATGGAGGTTAGATCAGAGGGTATACGTTTGAGGTTTTGGTTTGTTCGTTTGTGTTCAAGTATTGTTCTTTGGATTTGTTTGGTTCAGTTAGTGACAGTGAGTGAACTATGGCATTCACATTTCATTTCTGGGATTACTACTGGTATATATAACATTGCTCAAATTCAACTTCCTAAACAAAATAATGATAATAATAGTGTTGTTGATCAACCTCCTCCGATTACTTTTCTTCCTCCAAGTTAGTTTCTTGACTCTAATTCTACTCCTTTTTGTATCAGATATGTTTTTTGTTTTAATTTGATGATGTAATGCAACCTTTGATATAAATTAATTGATCAATGAAGCTTTTGTGTATTGTTGATTAGGTGTTATGTGACTTATATTTGGTGTTAGATGGTTATAATTGTGATTAGCTGAATTCAAGTGTAAATTGTATTTGTGTTGGTAAATTTTGTTTTTTGGTTATGTGCTTGTTTTAATGTTGAATTGTGGATTGTGAAATCTGTTGGGAGCATGAATGATGTATGCATTGATGTATGATGACTGTTAAGTGTTGTGAAACTGTTCTATAGTTGTTCTCTAGGGTTATTATATAATTTGAAATGCTGATTCTAGGGTGTTACATTTATAGATAACTGTCGTATTATAATTAAATAATAATGGATATGATTATAAATAAAATTTAGTGAAATAAGTCACACTATTGTTTATTTATTTTTAAATGATAAATCAATTTTCGATAAAAGGGATCCCCGGATATACCCTTTTTAATAAGGTACATCTTATACTGCGATATTACAAAATAACGACCAGGCATATATGATGAGAACATTAGAAGATACAAATTGAGAGAAAATCAGATAGTAATATTAGTAGATACTAAATGTTGCCATTAATTTTGAGGATAGGTATAGGATATAAAACAATAATACTTATCGATGTATGGGTCTGATGGATAGAGGTATAGAATATTTTTGATTGTTTTACTTTTATTTTCTTGCTCATTTTGGTAAATATTAAAGCTCTTTGACCTGACAAACTACAGGAAATTATACAAGTAATGGTTTTCTAAGAGTTTCCTGCAATGGTGGCTTGAATCAAATGCGTGCTGCGGTTTGTACTTCCTATTCTAAAATTTATCTGTTTGGATTATATCATAAGCTTAAATACTCATTTAGTGGTATGGTATTTCAGATATGTGACATGGTGACAATTGCTCGATTTTTGAATCTCACATTGATAGTGCCAGAGCTTGATAAGACATCATTTTGGGCAGATCCTAGGTATATACTTTGTTCTGATTTTATTTTTTGAGTATTCTCTAAGTTAACCTCCATATCATTCTAAAGTTGTGTTGTTTTCTTTTTGCAGTAATTTTGAGGACATTTTTGATGTGAAGCATTTCATTGATTCTTTACGGGACGAAGTTCGAATAGTGAAAAGAGTTCCTAAAAAGTTTAGCGGTAAATATGGATATTCTACCCTGGAGATGCCTCCTGTTAGCTGGTCGAATGAAAAATATTACTTGGAGCAGGTGTGTTTCTTTTATGGGCTGCGTTTGAGAAAACAGCTGAATAGTATTGTTCTAGCTATTTGCAATTTAAGGTTTGATAATATATGATTGATTAATGATTCTTGACCTATGTTTTTGGATAGTATGGCTTTCTTCAAATTGTTAATTTGTCAATGCTTTTCAGCACGGTTGTCAAATAGCAGCCAGCGGTAGCGCTATATCATAGCAGATTTTGATGAATCTTAGTTTCGTTATTAGGGCAATAGCGACCGCTATTCCAGTTTCTGCTAGTTGATTCAATGGCAATAGTGGAATGAAATAGAATTATAGGGCTATTTTTTGAAGAATAAAAATGAAGAATCTGCACGTGTGCCAAACATGACCTATTGTCTTATTAGAAAACTGAAAGAGTCAGTGTGTATTACTTTTCAATATTAAGATTATTAAGCTATTTCTACCTGTTAAAGAACATGACCTATTCACCATATATGTAAGCCTTTCAAAATAAAAGCCATGTTCTGCTTTATTCCCTTTTTATTTGTCTGCAACATGCCTTTTTTTTTCAATCATATAATTGACTTATTTCAACTGCTATGCGGATTCTACTATTTGCCCACAATGCTATCTTGTTTTCACATAGCCCATTTTTGGCTTTCCTTTATTTTCTGCAATCCACTATTGATAACACTGATTTTCAAAGAAGTTATGGGAGCTTTTATTTTTTATGATTGTATGTCATAAAGTTGTTTTCCTATTTAGTAAACTTGTTCATGAGCCACGATGGTTGTATGTGTCTGTCAGTTCTTGTGTCCTTTCCAACTTGATTGGAACTTTGAAATTATTATTATAATTTATTACTAGTCGATAATTATGAATCAGTTACATGAAGAAATTTATAGTTATGGTGACTACTAGTATTGGTTGTTTAGCAACTAAAATGAGTTGCTTTTGGTGTAGGATAGCCAACATAGGTTCCAAAAAGTAGCACTTCACTGGGTGTAGTATGATAAGATATAACGATTTTTTCTCTAACTTTGAGAAGTATATTCATTTTGTTTAATCCAACACTATCGACTCTACACTGCAGATTCTGCCACTTTATGGAAAGCACAAGGTGTTACACTTCAACAGAACTGATGCACGTTTAGCAAATAACGGTCTCCCACTTGATCTACAGAAACTCAGGTGTCGTGTCAATTACCAGGCTATTAAATTCACTCCTCAAATTGAGAATTTAGGGCGAAAATTGATTCGGATGCTTCACGAGAAGGGACCTTTTGTGGCACTGCATCTTAGATATGAGATGGATATGTTGGCTTTCTCAGGTTGTACTCAGGGTTGCTCAGAGAAAGAAGCCGAGGAACTCAAAAGATTGAGGTATTTTTATGTTTCATGTTTGGCTCTATGTATCGGCTTCTAATTCTTTCATGCTTCTGTCATTAATTGAGGTTGAGAGGGATTTGGATCCTCTGTTTCTGAATAACAGGATATGTTCCTCATATTAGTAAATGATAGTTACTTGTGCTCTGATAGAGAAACCTTTTGGATATGAGATTAGTTGTTATATATCTCATGAGTTATGAAATTATTTAGACTTTAGAGATATTAAGGCTCTTTTACTTTTGGAAAATCTTTTCTGTTTTTATTTTCTTTTTGCGGTTTTTCGTTACAAAACTGTCATATTTTTTTCAATCCATTTCCTGTTTTCAAAGACTTTGTACATACAACACTGACAATTTTTTTTTTTTGATATATTAAAGCCCTTTTACTTTTGCGAAACATTTTCTGTTTGTGCTTTTTAATTACAAAACTGTCAGATTGTTTTCAATCCATTTATTGTGTGTTTTTAGTATTATCTCTTGTACAAATTTTTTATGACAGGAAACAGATTGAAAACAAGTGGTGGATTTGTAATTCAGAAACATTTTCTTAAATTGAACAGACCCTTATTTACTTGATTATATGCTAACAAATATTATTGTGATTTAAGATTCTGTGGCACCCTTACAAAAATTAGATATCTATATGACATCAAACGTTGATTACACTTTGTCCCTTTGTGTAATTCAGGTATGCATTCCCTTGGTGGAGAGAAAAGGAGATAATTTCTGAAGAGAGGAGATCACAGGGTCTATGTCCTTTGACACCAGAAGAGGCGGCCTTAGTTCTTCGAGCCTTAGGTTTTGGTAGGGAGACACCGATATATATTGCAGCTGGTGAGATTTATGGCGGTGAACGTAGGCTTGCACAACTCAGAGCAGCATTTCCCCAACTTGTGAGTTTGTCAACATTTTAACTTCCTTCCATTTTTATGCTCATTGTTTGGGACATCGCACAACTGTTGAAAATTGTTCTTGCACTCATTAATGGTTGGACCTGATCTGAAAGATGCCTTTTCTCTCAATGATCCTCATTTTCAGTCTTTTCTGCTGTGCCACATCTGACTTTCTGCGTTTGCAATTTCAGGTGAAAAAGGAAATGTTGCTGACACGTGATGATTTGCAGCAGTTCCAGAATCACTCGTCGCAGATGGCAGCCTTGGATTTTATGGTTTCAGTAGCCAGTGACACCTTTATCCCTACTTATGATGGGAACATGGCAAAACTTGTGGAAGGCCATCGAAGGTATGTATTTACCCTAATGTTGCTGACATGTTATTAATACATTATTGTCGATACATTATCTATTATTGAAAACATTTAGAGTGACTAAAGTGAAATTTGCGAAATAACAGTGTAAGTGCATTGTTGGTATTATTTCTCTTCAATTTCTAACTAATTTGTTCGTCTGCAGGTATTCCGATTTTAGAAAAACAATCTTGTTGGATCGAAAAAAGGTCGTGGAATTGGTTGATATGCATCATAATGGAACCCTAAAATGGCACGAGTTTGCTGATGGCGTAAAACAAGTTCATGAAAAGAGAATTGGACAGCCAACTCGGCGAAAAGTTATAATCGACAGACCAAAGGAGGAGGACTATTTCTATGCCAACCCTCACGAGTGTCTATGTGAGGAAAGAAATTGTGATGAGTTTCTAGGTCATCACAACTCTAGTCAAGTATAG
Protein sequence

>MS.gene55283.t1

MEVRSEGIRLRFWFVRLCSSIVLWICLVQLVTVSELWHSHFISGITTGIYNIAQIQLPKQNNDNNSVVDQPPPITFLPPRNYTSNGFLRVSCNGGLNQMRAAICDMVTIARFLNLTLIVPELDKTSFWADPSNFEDIFDVKHFIDSLRDEVRIVKRVPKKFSGKYGYSTLEMPPVSWSNEKYYLEQILPLYGKHKVLHFNRTDARLANNGLPLDLQKLRCRVNYQAIKFTPQIENLGRKLIRMLHEKGPFVALHLRYEMDMLAFSGCTQGCSEKEAEELKRLRYAFPWWREKEIISEERRSQGLCPLTPEEAALVLRALGFGRETPIYIAAGEIYGGERRLAQLRAAFPQLVKKEMLLTRDDLQQFQNHSSQMAALDFMVSVASDTFIPTYDGNMAKLVEGHRRYSDFRKTILLDRKKVVELVDMHHNGTLKWHEFADGVKQVHEKRIGQPTRRKVIIDRPKEEDYFYANPHECLCEERNCDEFLGHHNSSQV