AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045607

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045607.t1 MTR_5g042200 96.146 467 14 2 1 463 28 494 0.0 939
MS.gene045607.t1 MTR_4g082310 79.698 463 91 2 1 463 47 506 0.0 785
MS.gene045607.t1 MTR_6g016015 60.850 447 170 3 1 445 64 507 0.0 580
MS.gene045607.t1 MTR_4g110030 62.084 451 162 4 1 445 61 508 0.0 579
MS.gene045607.t1 MTR_2g059350 61.521 447 162 3 1 445 69 507 0.0 574
MS.gene045607.t1 MTR_5g064620 49.392 411 196 4 48 446 101 511 9.07e-140 411
MS.gene045607.t1 MTR_4g125460 47.739 398 201 5 54 449 89 481 9.03e-136 400
MS.gene045607.t1 MTR_4g125460 47.739 398 201 5 54 449 228 620 3.46e-134 400
MS.gene045607.t1 MTR_4g019210 48.363 397 198 5 54 448 232 623 4.70e-134 401
MS.gene045607.t1 MTR_3g099480 47.887 426 203 6 41 450 119 541 1.00e-132 394
MS.gene045607.t1 MTR_5g081690 46.482 398 206 5 53 448 120 512 8.26e-130 386
MS.gene045607.t1 MTR_3g096020 47.433 409 190 7 57 450 192 590 1.20e-127 383
MS.gene045607.t1 MTR_4g100810 41.606 411 217 8 50 454 104 497 1.96e-99 308
MS.gene045607.t1 MTR_3g115220 43.434 396 209 9 55 448 112 494 6.40e-99 308
MS.gene045607.t1 MTR_5g099010 44.192 396 199 9 57 447 122 500 6.46e-98 306
MS.gene045607.t1 MTR_5g012770 42.157 408 212 9 50 456 120 504 5.53e-94 293
MS.gene045607.t1 MTR_3g086570 39.295 397 213 10 44 421 141 528 2.10e-86 275
MS.gene045607.t1 MTR_5g032100 37.442 430 220 10 54 447 86 502 1.65e-85 271
MS.gene045607.t1 MTR_3g100310 36.652 442 228 11 41 446 90 515 1.43e-84 269
MS.gene045607.t1 MTR_7g064210 79.762 168 24 2 167 325 22 188 1.05e-83 264
MS.gene045607.t1 MTR_4g084570 35.024 414 246 10 54 453 150 554 2.56e-80 259
MS.gene045607.t1 MTR_5g059260 37.864 412 226 11 55 446 158 559 8.90e-80 259
MS.gene045607.t1 MTR_4g132590 37.642 441 220 11 51 446 62 492 3.70e-79 254
MS.gene045607.t1 MTR_4g132590 37.642 441 220 11 51 446 161 591 4.83e-78 254
MS.gene045607.t1 MTR_1g102030 36.259 433 236 11 43 451 77 493 7.13e-78 252
MS.gene045607.t1 MTR_2g016470 35.520 442 236 8 48 448 183 616 1.86e-77 253
MS.gene045607.t1 MTR_1g031590 34.474 409 241 9 54 446 149 546 1.72e-76 249
MS.gene045607.t1 MTR_3g005340 34.719 409 244 11 54 448 147 546 1.43e-72 239
MS.gene045607.t1 MTR_4g023030 36.386 404 232 9 57 452 236 622 5.24e-68 228
MS.gene045607.t1 MTR_3g026650 35.264 397 238 8 57 448 176 558 9.10e-68 226
MS.gene045607.t1 MTR_3g086570 39.262 298 157 8 44 323 141 432 5.64e-64 213
MS.gene045607.t1 MTR_3g026650 37.618 319 187 5 57 370 176 487 3.34e-58 199
MS.gene045607.t1 MTR_4g010990 32.603 365 224 8 54 414 75 421 1.92e-57 196
MS.gene045607.t1 MTR_1g101990 37.793 299 164 8 163 451 3 289 5.82e-56 188
MS.gene045607.t1 MTR_4g010990 31.143 350 219 8 69 414 1 332 5.92e-49 171
MS.gene045607.t1 MTR_3g092590 31.715 309 183 9 51 336 82 385 3.01e-41 155
MS.gene045607.t1 MTR_3g092590 31.715 309 183 9 51 336 82 385 7.78e-41 155
MS.gene045607.t1 MTR_7g017330 30.693 303 191 6 43 329 87 386 2.11e-39 151
MS.gene045607.t1 MTR_3g026650 37.229 231 133 5 57 282 176 399 4.96e-36 137
MS.gene045607.t1 MTR_1g007390 29.524 315 188 10 51 336 82 391 3.83e-33 133
MS.gene045607.t1 MTR_1g101985 52.273 88 42 0 43 130 77 164 5.82e-25 101
MS.gene045607.t1 MTR_4g008200 26.888 331 193 14 54 373 35 327 2.10e-23 101
MS.gene045607.t1 MTR_4g008200 26.888 331 193 14 54 373 86 378 4.58e-23 101
MS.gene045607.t1 MTR_2g038320 25.000 344 201 10 54 383 92 392 1.15e-21 97.4
MS.gene045607.t1 MTR_1g052225 35.583 163 55 6 52 214 19 131 4.34e-18 80.9
MS.gene045607.t1 MTR_6g046230 39.252 107 57 2 102 200 34 140 3.20e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045607.t1 AT1G14020 71.242 459 124 1 1 459 46 496 0.0 698
MS.gene045607.t1 AT2G03280 69.406 438 124 3 9 445 52 480 0.0 649
MS.gene045607.t1 AT2G03280 65.376 465 124 4 9 445 52 507 0.0 634
MS.gene045607.t1 AT5G15740 59.865 446 174 3 1 445 57 498 0.0 563
MS.gene045607.t1 AT3G02250 58.744 446 179 3 1 445 57 498 0.0 551
MS.gene045607.t1 AT1G22460 46.925 439 219 6 18 447 125 558 4.26e-136 404
MS.gene045607.t1 AT2G37980 47.202 411 210 5 54 462 226 631 8.88e-135 402
MS.gene045607.t1 AT3G54100 46.731 413 208 6 49 454 212 619 6.26e-133 398
MS.gene045607.t1 AT5G35570 47.355 397 202 5 53 447 250 641 7.15e-130 390
MS.gene045607.t1 AT5G01100 48.241 398 198 5 54 447 216 609 3.67e-128 385
MS.gene045607.t1 AT5G64600 46.699 409 205 6 54 453 117 521 2.57e-126 377
MS.gene045607.t1 AT4G38390 44.557 395 205 7 54 446 123 505 6.80e-104 320
MS.gene045607.t1 AT1G76270 44.162 394 204 8 57 448 109 488 1.00e-103 320
MS.gene045607.t1 AT1G20550 41.176 408 224 7 57 462 112 505 1.52e-102 317
MS.gene045607.t1 AT4G16650 44.499 409 203 10 46 447 113 504 5.48e-95 297
MS.gene045607.t1 AT4G16650 44.499 409 203 10 46 447 113 504 5.48e-95 297
MS.gene045607.t1 AT4G24530 37.674 430 219 10 54 447 101 517 6.02e-87 275
MS.gene045607.t1 AT3G26370 38.287 397 217 9 44 421 149 536 8.79e-87 276
MS.gene045607.t1 AT1G04910 38.686 411 234 8 43 447 77 475 2.80e-86 274
MS.gene045607.t1 AT1G62330 35.682 440 227 10 55 448 222 651 1.19e-83 271
MS.gene045607.t1 AT1G38065 37.681 414 226 11 54 446 26 428 2.70e-83 264
MS.gene045607.t1 AT1G38065 37.681 414 226 11 54 446 36 438 2.87e-83 265
MS.gene045607.t1 AT1G11990 39.706 408 220 11 55 446 191 588 8.98e-83 266
MS.gene045607.t1 AT5G65470 35.431 429 226 10 56 446 87 502 1.05e-82 264
MS.gene045607.t1 AT1G38131 37.681 414 226 11 54 446 155 557 5.60e-82 265
MS.gene045607.t1 AT1G11990 36.629 445 219 11 55 446 176 610 9.27e-78 254
MS.gene045607.t1 AT1G14970 34.951 412 241 10 53 448 8 408 5.62e-77 246
MS.gene045607.t1 AT1G35510 35.366 410 242 9 53 448 158 558 1.45e-76 250
MS.gene045607.t1 AT1G29200 37.644 433 223 10 54 447 70 494 1.55e-76 248
MS.gene045607.t1 AT1G29200 37.644 433 223 10 54 447 70 494 1.55e-76 248
MS.gene045607.t1 AT1G14970 34.951 412 241 10 53 448 34 434 1.60e-76 246
MS.gene045607.t1 AT5G63390 37.845 399 228 8 57 449 167 551 4.79e-76 248
MS.gene045607.t1 AT1G29200 37.644 433 223 10 54 447 186 610 3.00e-75 248
MS.gene045607.t1 AT1G14970 34.951 412 241 10 53 448 154 554 3.52e-75 246
MS.gene045607.t1 AT2G01480 35.049 408 238 10 54 445 154 550 6.48e-75 245
MS.gene045607.t1 AT1G29200 37.705 427 219 10 60 447 2 420 1.99e-74 240
MS.gene045607.t1 AT2G01480 37.255 357 205 6 54 394 154 507 2.55e-74 243
MS.gene045607.t1 AT3G07900 34.596 396 247 5 57 450 191 576 1.45e-68 229
MS.gene045607.t1 AT2G44500 33.796 432 255 9 40 453 150 568 2.67e-67 226
MS.gene045607.t1 AT1G52630 33.333 372 226 9 47 415 67 419 3.96e-59 201
MS.gene045607.t1 AT1G52630 31.445 353 214 9 69 415 1 331 3.03e-50 174
MS.gene045607.t1 AT3G03810 33.981 309 187 6 43 336 78 384 1.67e-47 174
MS.gene045607.t1 AT3G03810 33.981 309 187 6 43 336 78 384 1.67e-47 174
MS.gene045607.t1 AT3G26370 38.636 220 122 6 44 253 149 365 7.05e-44 159
MS.gene045607.t1 AT3G30300 32.602 319 183 10 45 336 82 395 5.45e-43 161
MS.gene045607.t1 AT3G30300 32.602 319 183 10 45 336 82 395 5.45e-43 161
MS.gene045607.t1 AT2G44500 34.733 262 147 6 40 283 150 405 2.67e-36 139
MS.gene045607.t1 AT3G21190 25.076 331 196 15 45 363 81 371 4.42e-17 83.6

Find 99 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAGATTCTGCCGCTTTA+TGG 0.087587 5.3:-29789594 MS.gene045607:intron
ACTCCTCAAATTGAGAATTT+AGG 0.103676 5.3:-29789459 MS.gene045607:CDS
TGGCATTCACATTTCATTTC+TGG 0.140172 5.3:-29791975 MS.gene045607:CDS
CTCCTCAAATTGAGAATTTA+GGG 0.207048 5.3:-29789458 MS.gene045607:CDS
ATTGCAGCTGGTGAGATTTA+TGG 0.210044 5.3:-29788493 MS.gene045607:CDS
AGCTTGATAAGACATCATTT+TGG 0.262663 5.3:-29790886 MS.gene045607:CDS
TTTGCAATTTCAGGTGAAAA+AGG 0.267125 5.3:-29788238 MS.gene045607:intron
GTTCTTCGAGCCTTAGGTTT+TGG 0.287595 5.3:-29788535 MS.gene045607:CDS
GGCATTCACATTTCATTTCT+GGG 0.303223 5.3:-29791974 MS.gene045607:CDS
CGCCCTAAATTCTCAATTTG+AGG 0.307590 5.3:+29789456 None:intergenic
AGAACTAAGGCCGCCTCTTC+TGG 0.312939 5.3:+29788553 None:intergenic
ATCATAATGGAACCCTAAAA+TGG 0.324135 5.3:-29787833 MS.gene045607:CDS
CCATCTGCGATGAGTGATTC+TGG 0.327493 5.3:+29788181 None:intergenic
AGAAATTGTGATGAGTTTCT+AGG 0.340861 5.3:-29787675 MS.gene045607:CDS
TTGATTCAAGCCACCATTGC+AGG 0.359205 5.3:+29791057 None:intergenic
CTTTCATTGGACCAGCTAAC+AGG 0.361116 5.3:+29790639 None:intergenic
CAAGTTCATGAAAAGAGAAT+TGG 0.362522 5.3:-29787786 MS.gene045607:CDS
ATGGACATGTTGGCTTTCTC+AGG 0.373900 5.3:-29789372 MS.gene045607:CDS
TAGAAATAGTCCTCCTCCTT+TGG 0.381323 5.3:+29787729 None:intergenic
ACCTTTATCCCTACTTATGA+TGG 0.388352 5.3:-29788123 MS.gene045607:CDS
AGCTAACAGGAGGCATCTCC+AGG 0.388940 5.3:+29790652 None:intergenic
CTCCAAGTAATATCTTTCAT+TGG 0.409045 5.3:+29790626 None:intergenic
GCCTTAGTTCTTCGAGCCTT+AGG 0.411617 5.3:-29788541 MS.gene045607:CDS
TGTTGACAAACTCACAAGTT+GGG 0.416079 5.3:+29788432 None:intergenic
CTCATCGCAGATGGCCGCCT+TGG 0.420168 5.3:-29788172 MS.gene045607:CDS
GGCTTTCTCAGGCTGTACTC+AGG 0.422621 5.3:-29789361 MS.gene045607:CDS
TTCATTTCTGGGATTACTAC+TGG 0.431994 5.3:-29791963 MS.gene045607:CDS
CCCATCATAAGTAGGGATAA+AGG 0.444424 5.3:+29788122 None:intergenic
TCACCAGCTGCAATATATAT+CGG 0.453493 5.3:+29788502 None:intergenic
ATTTAGGGCGAAAATTGATT+CGG 0.453678 5.3:-29789443 MS.gene045607:CDS
TAGTGACAGTGAGTGAACTA+TGG 0.456536 5.3:-29791995 MS.gene045607:CDS
TGGAGATGCCTCCTGTTAGC+TGG 0.458292 5.3:-29790650 MS.gene045607:CDS
CTTGGAGGAAGAAAAGTAAT+CGG 0.481816 5.3:+29791876 None:intergenic
GCTTTCTCAGGCTGTACTCA+GGG 0.482246 5.3:-29789360 MS.gene045607:CDS
TTTCTAAGAGTTTCCTGCAA+TGG 0.482508 5.3:-29791070 MS.gene045607:CDS
TTGGTTGATATGCATCATAA+TGG 0.483990 5.3:-29787846 MS.gene045607:CDS
ACCTAAGGCTCGAAGAACTA+AGG 0.487906 5.3:+29788540 None:intergenic
AATTCAGGTATGCATTCCCT+TGG 0.488348 5.3:-29788636 MS.gene045607:intron
CTAAGAGTTTCCTGCAATGG+TGG 0.489996 5.3:-29791067 MS.gene045607:CDS
TCAGGTATGCATTCCCTTGG+TGG 0.491881 5.3:-29788633 MS.gene045607:intron
CTAAGATGCAGTGCCACAAA+AGG 0.492255 5.3:+29789402 None:intergenic
GTCCAATGAAAGATATTACT+TGG 0.492504 5.3:-29790628 MS.gene045607:CDS
ACAGGAAATTATACAAGTAA+TGG 0.492528 5.3:-29791094 MS.gene045607:intron
GCCATGTTCCCATCATAAGT+AGG 0.492805 5.3:+29788114 None:intergenic
AATGATGTCTTATCAAGCTC+TGG 0.501078 5.3:+29790890 None:intergenic
AGGAGATAATTTCTGAAGAG+AGG 0.503455 5.3:-29788603 MS.gene045607:CDS
TAGATATGAGATGGACATGT+TGG 0.506081 5.3:-29789382 MS.gene045607:CDS
CCATGTTCCCATCATAAGTA+GGG 0.511468 5.3:+29788115 None:intergenic
ATTCCCTTGGTGGAGAGAAA+AGG 0.524582 5.3:-29788623 MS.gene045607:CDS
GCCGCCTCTTCTGGTGTCAA+AGG 0.536521 5.3:+29788562 None:intergenic
GATTCGGATGCTTCACGAGA+AGG 0.536968 5.3:-29789427 MS.gene045607:CDS
CCTTTATCCCTACTTATGAT+GGG 0.537062 5.3:-29788122 MS.gene045607:CDS
AGTAGGGATAAAGGTGTCAC+TGG 0.538681 5.3:+29788131 None:intergenic
TTCTGAAGAGAGGAGATCAC+AGG 0.544928 5.3:-29788593 MS.gene045607:CDS
TGAAAGATATTACTTGGAGC+AGG 0.549066 5.3:-29790622 MS.gene045607:intron
CCCTACTTATGATGGGAACA+TGG 0.557915 5.3:-29788115 MS.gene045607:CDS
CTGAGTTTCTGTAGATCAAG+TGG 0.559172 5.3:+29789513 None:intergenic
ACCTTGTGCTTTCCATAAAG+CGG 0.559211 5.3:+29789582 None:intergenic
ATTCGGATGCTTCACGAGAA+GGG 0.561013 5.3:-29789426 MS.gene045607:CDS
CCGAGGAACTCAAAAGATTG+AGG 0.570538 5.3:-29789320 MS.gene045607:intron
CCAGAATCACTCATCGCAGA+TGG 0.574783 5.3:-29788181 MS.gene045607:CDS
TGGGAACATGGCAAAACTTG+TGG 0.580054 5.3:-29788103 MS.gene045607:CDS
CACTTGATCTACAGAAACTC+AGG 0.581030 5.3:-29789512 MS.gene045607:CDS
TACTGAAACCATAAAATCCA+AGG 0.582440 5.3:+29788155 None:intergenic
ACACCGATATATATTGCAGC+TGG 0.586158 5.3:-29788505 MS.gene045607:CDS
TCCTTTGACACCAGAAGAGG+CGG 0.587100 5.3:-29788563 MS.gene045607:CDS
AGAGAATTGGACAGCCAACT+CGG 0.589262 5.3:-29787773 MS.gene045607:CDS
GACGCACGTCTAGCAAATAA+CGG 0.591633 5.3:-29789540 MS.gene045607:CDS
TGTCTCCCTACCAAAACCTA+AGG 0.604346 5.3:+29788525 None:intergenic
AGATTTATGGCGGTGAACGT+AGG 0.606142 5.3:-29788480 MS.gene045607:CDS
TATAATCGACAGACCAAAGG+AGG 0.606405 5.3:-29787742 MS.gene045607:CDS
AAATGGCACGAGTTTGCTGA+TGG 0.607123 5.3:-29787816 MS.gene045607:CDS
TCCTAAACAAAATAATGTCG+TGG 0.607462 5.3:-29791913 MS.gene045607:CDS
AACTTGTGGAAGGCCATCGA+AGG 0.608718 5.3:-29788089 MS.gene045607:intron
AACATGGCAAAACTTGTGGA+AGG 0.609196 5.3:-29788099 MS.gene045607:CDS
ACATAGACACTCGTGAGGGT+TGG 0.612994 5.3:+29787704 None:intergenic
GTTGACAAACTCACAAGTTG+GGG 0.614088 5.3:+29788433 None:intergenic
ATGTCCTTTGACACCAGAAG+AGG 0.616187 5.3:-29788566 MS.gene045607:CDS
TTGCTCAGAGAAAGAAGCCG+AGG 0.622924 5.3:-29789337 MS.gene045607:CDS
GGAAGAAAAGTAATCGGAGG+CGG 0.623913 5.3:+29791882 None:intergenic
CTTGAATCAAATGCGTGCTG+CGG 0.623967 5.3:-29791044 MS.gene045607:intron
AGTTATAATCGACAGACCAA+AGG 0.626511 5.3:-29787745 MS.gene045607:CDS
ACTGCATCTTAGATATGAGA+TGG 0.633287 5.3:-29789391 MS.gene045607:CDS
GGGTAAATACATACCTTCGA+TGG 0.636072 5.3:+29788076 None:intergenic
CCCTCACGAGTGTCTATGTG+AGG 0.640114 5.3:-29787700 MS.gene045607:CDS
AATCGACAGACCAAAGGAGG+AGG 0.642909 5.3:-29787739 MS.gene045607:CDS
TAAATATGGATATTCTACCC+TGG 0.644817 5.3:-29790670 MS.gene045607:CDS
GCCGCTTTATGGAAAGCACA+AGG 0.648292 5.3:-29789583 MS.gene045607:CDS
TGAGTTTCTGTAGATCAAGT+GGG 0.659206 5.3:+29789514 None:intergenic
TCATTGGACCAGCTAACAGG+AGG 0.662833 5.3:+29790642 None:intergenic
TCCTCACATAGACACTCGTG+AGG 0.666757 5.3:+29787699 None:intergenic
CCTCACATAGACACTCGTGA+GGG 0.677641 5.3:+29787700 None:intergenic
GCTAACAGGAGGCATCTCCA+GGG 0.682429 5.3:+29790653 None:intergenic
CAGGTGTCGTGTCAATTACG+AGG 0.683646 5.3:-29789493 MS.gene045607:CDS
TCTGAAGAGAGGAGATCACA+GGG 0.690255 5.3:-29788592 MS.gene045607:CDS
GGAGGAAGAAAAGTAATCGG+AGG 0.701615 5.3:+29791879 None:intergenic
GCAGCTGGTGAGATTTATGG+CGG 0.732613 5.3:-29788490 MS.gene045607:CDS
GGTATTTCAGATATGTGACA+TGG 0.740956 5.3:-29790951 MS.gene045607:intron
TGAAACCATAAAATCCAAGG+CGG 0.765862 5.3:+29788158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGAAAAAAAAAAAAAAAAAA+AGG + chr5.3:29789678-29789697 None:intergenic 10.0%
!! AAATATCATTTACTAATATG+AGG + chr5.3:29790553-29790572 None:intergenic 15.0%
!! AATACTAAAAACACAATAAA+TGG + chr5.3:29790858-29790877 None:intergenic 15.0%
!! ATAAATCAATGTTCAATAAA+AGG - chr5.3:29788352-29788371 MS.gene045607:intron 15.0%
!! ATGAAGAAATTTATAGTTAT+GGG - chr5.3:29789914-29789933 MS.gene045607:intron 15.0%
!! ATTGAAAAATTAACAATTTG+GGG + chr5.3:29789267-29789286 None:intergenic 15.0%
!! CATTGAAAAATTAACAATTT+GGG + chr5.3:29789268-29789287 None:intergenic 15.0%
!! GATCAATTAATTTATATCAA+AGG + chr5.3:29787958-29787977 None:intergenic 15.0%
!! TAAATCAATGTTCAATAAAA+GGG - chr5.3:29788353-29788372 MS.gene045607:intron 15.0%
!! TGGAATAAAATAGAATTATA+GGG - chr5.3:29789441-29789460 MS.gene045607:CDS 15.0%
!!! AAACAGATAAATTTTAGAAT+AGG + chr5.3:29788724-29788743 None:intergenic 15.0%
!!! TTCTAACTATTTGTATTTTA+AGG - chr5.3:29789182-29789201 MS.gene045607:intron 15.0%
!! AAAAACCAAGTTTACTAAAT+AGG + chr5.3:29789960-29789979 None:intergenic 20.0%
!! AAAAAGTTTAGCAGTAAATA+TGG - chr5.3:29789049-29789068 MS.gene045607:intron 20.0%
!! AAAACATATCTGATACAAAA+AGG + chr5.3:29787908-29787927 None:intergenic 20.0%
!! AAGTCAATTATATGTTTGAA+AGG + chr5.3:29789700-29789719 None:intergenic 20.0%
!! AGCATATAATCAAGTAAATA+AGG + chr5.3:29790964-29790983 None:intergenic 20.0%
!! AGTCAATTATATGTTTGAAA+GGG + chr5.3:29789699-29789718 None:intergenic 20.0%
!! CATGAAGAAATTTATAGTTA+TGG - chr5.3:29789913-29789932 MS.gene045607:intron 20.0%
!! GCATATAATCAAGTAAATAA+GGG + chr5.3:29790963-29790982 None:intergenic 20.0%
!! GCATTGAAAAATTAACAATT+TGG + chr5.3:29789269-29789288 None:intergenic 20.0%
!! GTGGAATAAAATAGAATTAT+AGG - chr5.3:29789440-29789459 MS.gene045607:CDS 20.0%
!!! CAAGATTGTTTTTCTAAAAT+CGG + chr5.3:29791843-29791862 None:intergenic 20.0%
!!! GTATTTTTATGTTTCATGTT+TGG - chr5.3:29790435-29790454 MS.gene045607:intron 20.0%
!!! GTTGGTAAATTTTGTTTTTT+TGG - chr5.3:29788081-29788100 MS.gene045607:intron 20.0%
!!! TATTTACTGCTAAACTTTTT+AGG + chr5.3:29789049-29789068 None:intergenic 20.0%
!!! TTTTAGAAAAACAATCTTGT+TGG - chr5.3:29791844-29791863 MS.gene045607:intron 20.0%
!!! TTTTATTTTCTCACTCATTT+TGG - chr5.3:29788585-29788604 MS.gene045607:CDS 20.0%
! AAAATCAGTGTTATCAATAG+TGG + chr5.3:29789815-29789834 None:intergenic 25.0%
! AAGCTTAAATACTCATTTAG+TGG - chr5.3:29788756-29788775 MS.gene045607:intron 25.0%
! AAGTCTATGAAAACAAGAAA+TGG + chr5.3:29790715-29790734 None:intergenic 25.0%
! AATAGGTCATGTTCTTTAAA+AGG + chr5.3:29789583-29789602 None:intergenic 25.0%
! AATTTCAAAGACTGAAAATG+AGG + chr5.3:29791445-29791464 None:intergenic 25.0%
! ACAGGAAATTATACAAGTAA+TGG - chr5.3:29788639-29788658 MS.gene045607:intron 25.0%
! AGTGTAAATTGTATTTGTGT+TGG - chr5.3:29788063-29788082 MS.gene045607:intron 25.0%
! ATACCTATCCTCAAAATTAA+TGG + chr5.3:29788492-29788511 None:intergenic 25.0%
! ATAGATATCTAATTGCTGTA+AGG + chr5.3:29791022-29791041 None:intergenic 25.0%
! ATGTTGCAGACAAATAAAAA+GGG + chr5.3:29789654-29789673 None:intergenic 25.0%
! GAGATGTACCTTATTAAAAA+GGG + chr5.3:29788392-29788411 None:intergenic 25.0%
! TAGATATCTAATTGCTGTAA+GGG + chr5.3:29791021-29791040 None:intergenic 25.0%
! TGAGATGTACCTTATTAAAA+AGG + chr5.3:29788393-29788412 None:intergenic 25.0%
! TTACTTGTATAATTTCCTGT+AGG + chr5.3:29788639-29788658 None:intergenic 25.0%
! TTTCAAATTATAATAACCCC+AGG + chr5.3:29788213-29788232 None:intergenic 25.0%
!! CAGTTTTCTAATAAGACAAT+AGG + chr5.3:29789517-29789536 None:intergenic 25.0%
!! CTGATTTTCAAAGAAGTTAT+GGG - chr5.3:29789827-29789846 MS.gene045607:intron 25.0%
!! GTTTTCCTATTTAGTAAACT+TGG - chr5.3:29789952-29789971 MS.gene045607:intron 25.0%
!! TATTAAAGCCCTTTTACTTT+TGG - chr5.3:29790778-29790797 MS.gene045607:intron 25.0%
!! TATTGTGATTTAAGATTCTG+TGG - chr5.3:29790993-29791012 MS.gene045607:intron 25.0%
!! TATTGTTCTTTGGATTTGTT+TGG - chr5.3:29787709-29787728 MS.gene045607:CDS 25.0%
!! TGATTCTTGACCTATATTTT+TGG - chr5.3:29789228-29789247 MS.gene045607:intron 25.0%
!! TTCTTTTTGCAGTAATTTTG+AGG - chr5.3:29788958-29788977 MS.gene045607:intron 25.0%
!! TTTTTAATAAGGTACATCTC+AGG - chr5.3:29788392-29788411 MS.gene045607:intron 25.0%
!!! AACATGGCTTATATTTTGAA+AGG + chr5.3:29789621-29789640 None:intergenic 25.0%
!!! AATTTGAAATGCTGATTCTA+GGG - chr5.3:29788224-29788243 MS.gene045607:CDS 25.0%
!!! ACCTATATTTTTGGATAGTA+TGG - chr5.3:29789237-29789256 MS.gene045607:intron 25.0%
!!! ACTGATTTTCAAAGAAGTTA+TGG - chr5.3:29789826-29789845 MS.gene045607:intron 25.0%
!!! ATTAAAGCCCTTTTACTTTT+GGG - chr5.3:29790779-29790798 MS.gene045607:intron 25.0%
!!! CAACTAAAATAAGTTGCTTT+TGG - chr5.3:29789982-29790001 MS.gene045607:intron 25.0%
!!! CTGTTTTTATTTTCCTTCTA+CGG - chr5.3:29790656-29790675 MS.gene045607:CDS 25.0%
!!! CTTGTTTTAATGTTGAATTG+TGG - chr5.3:29788111-29788130 MS.gene045607:CDS 25.0%
!!! TAATTTGAAATGCTGATTCT+AGG - chr5.3:29788223-29788242 MS.gene045607:CDS 25.0%
!!! TACACAACTTTAGAATGATA+TGG + chr5.3:29788935-29788954 None:intergenic 25.0%
!!! TTAATTTTGAGGATAGGTAT+AGG - chr5.3:29788492-29788511 MS.gene045607:CDS 25.0%
!!! TTTTGAAAGGCTTACATATA+TGG + chr5.3:29789608-29789627 None:intergenic 25.0%
AAACGTTTCCCAAAAGTAAA+AGG + chr5.3:29790790-29790809 None:intergenic 30.0%
AACGTTTCCCAAAAGTAAAA+GGG + chr5.3:29790789-29790808 None:intergenic 30.0%
AATAACATGTCAGCAACATT+CGG + chr5.3:29791681-29791700 None:intergenic 30.0%
AATCTTGTTGGATCGAAAAA+AGG - chr5.3:29791856-29791875 MS.gene045607:intron 30.0%
ACTCCTCAAATTGAGAATTT+AGG - chr5.3:29790274-29790293 MS.gene045607:intron 30.0%
AGAAATTGTGATGAGTTTCT+AGG - chr5.3:29792058-29792077 MS.gene045607:intron 30.0%
ATAAAAATGAAGAATCTGCG+CGG - chr5.3:29789478-29789497 MS.gene045607:CDS 30.0%
ATAAGACAATAGGTCATGTT+TGG + chr5.3:29789507-29789526 None:intergenic 30.0%
CAAGTTCATGAAAAGAGAAT+TGG - chr5.3:29791947-29791966 MS.gene045607:CDS 30.0%
CAATATTGCTTATCGATGAA+TGG - chr5.3:29788523-29788542 MS.gene045607:CDS 30.0%
CAGAACAAAGTATATACCTA+GGG + chr5.3:29788878-29788897 None:intergenic 30.0%
CATGTTGCAGACAAATAAAA+AGG + chr5.3:29789655-29789674 None:intergenic 30.0%
CTATCCTAGTTTCGTTATTA+GGG - chr5.3:29789369-29789388 MS.gene045607:CDS 30.0%
CTATCTTGTATTTCACATAG+CGG - chr5.3:29789760-29789779 MS.gene045607:intron 30.0%
CTCCAAGTAATATCTTTCAT+TGG + chr5.3:29789110-29789129 None:intergenic 30.0%
CTCCTCAAATTGAGAATTTA+GGG - chr5.3:29790275-29790294 MS.gene045607:intron 30.0%
GAAATACAAGATAGCATTGT+GGG + chr5.3:29789754-29789773 None:intergenic 30.0%
GACTTATATTAGGTGTTAGA+TGG - chr5.3:29788015-29788034 MS.gene045607:intron 30.0%
GCATACCTGAATTACAAAAA+GGG + chr5.3:29791090-29791109 None:intergenic 30.0%
GCCATACTATCCAAAAATAT+AGG + chr5.3:29789241-29789260 None:intergenic 30.0%
GTCCAATGAAAGATATTACT+TGG - chr5.3:29789105-29789124 MS.gene045607:intron 30.0%
TAAATACTCATTTAGTGGCA+TGG - chr5.3:29788761-29788780 MS.gene045607:intron 30.0%
TAAATATGGATATTCTACCC+TGG - chr5.3:29789063-29789082 MS.gene045607:intron 30.0%
TACTGAAACCATAAAATCCA+AGG + chr5.3:29791581-29791600 None:intergenic 30.0%
TCAAACAATGAGCAGAAAAA+TGG + chr5.3:29791340-29791359 None:intergenic 30.0%
TCAGAACAAAGTATATACCT+AGG + chr5.3:29788879-29788898 None:intergenic 30.0%
TCCTAAACAAAATAATGTCG+TGG - chr5.3:29787820-29787839 MS.gene045607:CDS 30.0%
TGAAATACAAGATAGCATTG+TGG + chr5.3:29789755-29789774 None:intergenic 30.0%
TGATATGGAGGTTAAATTAG+AGG + chr5.3:29788920-29788939 None:intergenic 30.0%
TGCATACCTGAATTACAAAA+AGG + chr5.3:29791091-29791110 None:intergenic 30.0%
TTAGAGTCAAGAAACTAACT+TGG + chr5.3:29787878-29787897 None:intergenic 30.0%
TTCTGTAATTGAGGATAAGA+GGG - chr5.3:29790489-29790508 MS.gene045607:intron 30.0%
! AGCTTGATAAGACATCATTT+TGG - chr5.3:29788847-29788866 MS.gene045607:intron 30.0%
! ATCATAATGGAACCCTAAAA+TGG - chr5.3:29791900-29791919 MS.gene045607:CDS 30.0%
! ATTTAGGGCGAAAATTGATT+CGG - chr5.3:29790290-29790309 MS.gene045607:intron 30.0%
! CTTATTAAAAAGGGCATATC+CGG + chr5.3:29788383-29788402 None:intergenic 30.0%
! GCTTGATAAGACATCATTTT+GGG - chr5.3:29788848-29788867 MS.gene045607:intron 30.0%
! GGTGGATTTGTAATTCAAAA+AGG - chr5.3:29790893-29790912 MS.gene045607:CDS 30.0%
! GGTGTTATGTGACTTATATT+AGG - chr5.3:29788005-29788024 MS.gene045607:intron 30.0%
! TGTGTTCAAGTATTGTTCTT+TGG - chr5.3:29787699-29787718 MS.gene045607:CDS 30.0%
! TGTTAAGTGTTGTTCTATAG+TGG - chr5.3:29788174-29788193 MS.gene045607:CDS 30.0%
! TTGGTTGATATGCATCATAA+TGG - chr5.3:29791887-29791906 MS.gene045607:CDS 30.0%
! TTTGCAATTTCAGGTGAAAA+AGG - chr5.3:29791495-29791514 MS.gene045607:intron 30.0%
!! AAGTGTTGCCATTAATTTTG+AGG - chr5.3:29788481-29788500 MS.gene045607:CDS 30.0%
!! ACAACTTTAGAATGATATGG+AGG + chr5.3:29788932-29788951 None:intergenic 30.0%
!! ACCACGACATTATTTTGTTT+AGG + chr5.3:29787824-29787843 None:intergenic 30.0%
!! GCTTTTGTGTATTGTTGATT+AGG - chr5.3:29787984-29788003 MS.gene045607:intron 30.0%
!! TAGTGGATTGCAGAAAATAA+AGG + chr5.3:29789798-29789817 None:intergenic 30.0%
!! TTCTAAAGTTCCAATCAAGT+TGG + chr5.3:29789869-29789888 None:intergenic 30.0%
!! TTGCCATTAATTTTGAGGAT+AGG - chr5.3:29788486-29788505 MS.gene045607:CDS 30.0%
!!! AAATAAGTTGCTTTTGGTGT+AGG - chr5.3:29789988-29790007 MS.gene045607:intron 30.0%
!!! TATTTCACATAGCGGATTTT+TGG - chr5.3:29789768-29789787 MS.gene045607:intron 30.0%
AAAGGGAATAAAGCAGAACA+TGG + chr5.3:29789637-29789656 None:intergenic 35.0%
AATGATGTCTTATCAAGCTC+TGG + chr5.3:29788846-29788865 None:intergenic 35.0%
AATTGAGGATAAGAGGGATT+TGG - chr5.3:29790495-29790514 MS.gene045607:intron 35.0%
ACAACTCTAGTCAAGTATAG+TGG - chr5.3:29792086-29792105 MS.gene045607:intron 35.0%
ACAATGAGCAGAAAAATGGA+AGG + chr5.3:29791336-29791355 None:intergenic 35.0%
ACCTTTATCCCTACTTATGA+TGG - chr5.3:29791610-29791629 MS.gene045607:intron 35.0%
ACTGCATCTTAGATATGAGA+TGG - chr5.3:29790342-29790361 MS.gene045607:intron 35.0%
AGTATTATCTCTTGTACACG+TGG - chr5.3:29790872-29790891 MS.gene045607:intron 35.0%
AGTTATAATCGACAGACCAA+AGG - chr5.3:29791988-29792007 MS.gene045607:CDS 35.0%
ATAACATGTCAGCAACATTC+GGG + chr5.3:29791680-29791699 None:intergenic 35.0%
ATAATTTCCTGTAGGTTGTC+AGG + chr5.3:29788631-29788650 None:intergenic 35.0%
ATGTTGACAAACTCACAAGT+TGG + chr5.3:29791305-29791324 None:intergenic 35.0%
ATTGCCCTAATAACGAAACT+AGG + chr5.3:29789376-29789395 None:intergenic 35.0%
ATTGTTCTTGCGCTCATTAA+TGG - chr5.3:29791381-29791400 MS.gene045607:intron 35.0%
CATTCTTGCTTCTGTAATTG+AGG - chr5.3:29790480-29790499 MS.gene045607:intron 35.0%
CCTTTATCCCTACTTATGAT+GGG - chr5.3:29791611-29791630 MS.gene045607:intron 35.0%
CTTCTGTAATTGAGGATAAG+AGG - chr5.3:29790488-29790507 MS.gene045607:intron 35.0%
CTTGGAGGAAGAAAAGTAAT+CGG + chr5.3:29787860-29787879 None:intergenic 35.0%
CTTTCTGTGTTTGCAATTTC+AGG - chr5.3:29791486-29791505 MS.gene045607:intron 35.0%
GAAAATGCATCTTTCAGATC+AGG + chr5.3:29791412-29791431 None:intergenic 35.0%
GACTTATTTCAACTGCTATG+CGG - chr5.3:29789715-29789734 MS.gene045607:intron 35.0%
GCTATCCTAGTTTCGTTATT+AGG - chr5.3:29789368-29789387 MS.gene045607:CDS 35.0%
GGCATTCACATTTCATTTCT+GGG - chr5.3:29787759-29787778 MS.gene045607:CDS 35.0%
GGCTTACATATATGGTGAAT+AGG + chr5.3:29789600-29789619 None:intergenic 35.0%
GGTATTTCAGATATGTGACA+TGG - chr5.3:29788782-29788801 MS.gene045607:intron 35.0%
TAAAAATGAAGAATCTGCGC+GGG - chr5.3:29789479-29789498 MS.gene045607:CDS 35.0%
TAACAGTGTAAGTGCATTGT+TGG - chr5.3:29791770-29791789 MS.gene045607:intron 35.0%
TAGATATGAGATGGACATGT+TGG - chr5.3:29790351-29790370 MS.gene045607:intron 35.0%
TCACCAGCTGCAATATATAT+CGG + chr5.3:29791234-29791253 None:intergenic 35.0%
TGAAACCATAAAATCCAAGG+CGG + chr5.3:29791578-29791597 None:intergenic 35.0%
TGAAAGATATTACTTGGAGC+AGG - chr5.3:29789111-29789130 MS.gene045607:intron 35.0%
TGAGTTTCTGTAGATCAAGT+GGG + chr5.3:29790222-29790241 None:intergenic 35.0%
TGGCATTCACATTTCATTTC+TGG - chr5.3:29787758-29787777 MS.gene045607:CDS 35.0%
TGTTCAATAAAAGGGATCTC+CGG - chr5.3:29788361-29788380 MS.gene045607:intron 35.0%
TGTTGACAAACTCACAAGTT+GGG + chr5.3:29791304-29791323 None:intergenic 35.0%
TTGAATCAACTAGCAGAAAC+TGG + chr5.3:29789412-29789431 None:intergenic 35.0%
TTGTAACGAAAAACCGTAGA+AGG + chr5.3:29790672-29790691 None:intergenic 35.0%
! ACTGTCCCTTTTTGTAATTC+AGG - chr5.3:29791082-29791101 MS.gene045607:CDS 35.0%
! AGGAGATAATTTCTGAAGAG+AGG - chr5.3:29791130-29791149 MS.gene045607:intron 35.0%
! AGTTGATTCAATGGCAATAG+TGG - chr5.3:29789421-29789440 MS.gene045607:CDS 35.0%
! ATTATAACTTTTCGCCGAGT+TGG + chr5.3:29791977-29791996 None:intergenic 35.0%
! CGGATATGCCCTTTTTAATA+AGG - chr5.3:29788381-29788400 MS.gene045607:intron 35.0%
! GTTTCTGCTAGTTGATTCAA+TGG - chr5.3:29789412-29789431 MS.gene045607:CDS 35.0%
! TGTGGATTGTGAAATCTGTT+GGG - chr5.3:29788129-29788148 MS.gene045607:CDS 35.0%
! TTGTGGATTGTGAAATCTGT+TGG - chr5.3:29788128-29788147 MS.gene045607:CDS 35.0%
! TTTCTAAGAGTTTCCTGCAA+TGG - chr5.3:29788663-29788682 MS.gene045607:intron 35.0%
!! AAGTTCCAATCAAGTTGGAA+AGG + chr5.3:29789864-29789883 None:intergenic 35.0%
!! TAACTAATTTGTTCGTCTGC+AGG - chr5.3:29791813-29791832 MS.gene045607:intron 35.0%
!! TTATCGATGAATGGTTCTGA+TGG - chr5.3:29788532-29788551 MS.gene045607:CDS 35.0%
!! TTCATTTCTGGGATTACTAC+TGG - chr5.3:29787770-29787789 MS.gene045607:CDS 35.0%
!!! AGTGGTTTTTGAAATTGTCC+TGG - chr5.3:29788192-29788211 MS.gene045607:CDS 35.0%
!!! CTACTTTTTGGAACCTATGT+TGG + chr5.3:29790018-29790037 None:intergenic 35.0%
!!! GTGGTTTTTGAAATTGTCCT+GGG - chr5.3:29788193-29788212 MS.gene045607:CDS 35.0%
!!! TGGTTTTTGAAATTGTCCTG+GGG - chr5.3:29788194-29788213 MS.gene045607:CDS 35.0%
AAGAGGGATTTGGATCTTCT+CGG - chr5.3:29790505-29790524 MS.gene045607:intron 40.0%
AATTCAGGTATGCATTCCCT+TGG - chr5.3:29791097-29791116 MS.gene045607:intron 40.0%
ACACCGATATATATTGCAGC+TGG - chr5.3:29791228-29791247 MS.gene045607:intron 40.0%
ACCTTGTGCTTTCCATAAAG+CGG + chr5.3:29790154-29790173 None:intergenic 40.0%
ACTAGCAGAAACTGGAATAG+CGG + chr5.3:29789404-29789423 None:intergenic 40.0%
ATAGCATTGTGGGCAAATAG+TGG + chr5.3:29789744-29789763 None:intergenic 40.0%
ATGAATTAGAAGCCGATGCA+TGG + chr5.3:29790463-29790482 None:intergenic 40.0%
ATTATCTCTTGTACACGTGG+TGG - chr5.3:29790875-29790894 MS.gene045607:CDS 40.0%
ATTGCAGCTGGTGAGATTTA+TGG - chr5.3:29791240-29791259 MS.gene045607:intron 40.0%
CACTTGATCTACAGAAACTC+AGG - chr5.3:29790221-29790240 MS.gene045607:intron 40.0%
CAGTGTAGAGTCAATAGTGT+TGG + chr5.3:29790122-29790141 None:intergenic 40.0%
CCATGTTCCCATCATAAGTA+GGG + chr5.3:29791621-29791640 None:intergenic 40.0%
CCCATCATAAGTAGGGATAA+AGG + chr5.3:29791614-29791633 None:intergenic 40.0%
CGCCCTAAATTCTCAATTTG+AGG + chr5.3:29790280-29790299 None:intergenic 40.0%
CTGAGTTTCTGTAGATCAAG+TGG + chr5.3:29790223-29790242 None:intergenic 40.0%
CTTCTCGGTTTCTGAATAAC+AGG - chr5.3:29790520-29790539 MS.gene045607:intron 40.0%
GAGTCAAGAAACTAACTTGG+AGG + chr5.3:29787875-29787894 None:intergenic 40.0%
GGGTAAATACATACCTTCGA+TGG + chr5.3:29791660-29791679 None:intergenic 40.0%
GTTGACAAACTCACAAGTTG+GGG + chr5.3:29791303-29791322 None:intergenic 40.0%
TAGAAATAGTCCTCCTCCTT+TGG + chr5.3:29792007-29792026 None:intergenic 40.0%
TAGTGACAGTGAGTGAACTA+TGG - chr5.3:29787738-29787757 MS.gene045607:CDS 40.0%
TATAATCGACAGACCAAAGG+AGG - chr5.3:29791991-29792010 MS.gene045607:CDS 40.0%
TCGAAAAAAGGTCGTGGAAT+TGG - chr5.3:29791868-29791887 MS.gene045607:intron 40.0%
TGTGTCCTTTCCAACTTGAT+TGG - chr5.3:29789856-29789875 MS.gene045607:intron 40.0%
TTCTTGCGCTCATTAATGGT+TGG - chr5.3:29791385-29791404 MS.gene045607:intron 40.0%
! GCTCTGATAGAGAAACCTTT+TGG - chr5.3:29790579-29790598 MS.gene045607:intron 40.0%
!! AGGGTATACGTTTGAGGTTT+TGG - chr5.3:29787666-29787685 MS.gene045607:CDS 40.0%
!! GATGAATGGTTCTGATGGAT+AGG - chr5.3:29788537-29788556 MS.gene045607:CDS 40.0%
!!! AGCAAACTCGTGCCATTTTA+GGG + chr5.3:29791915-29791934 None:intergenic 40.0%
!!! CCTCAATCTTTTGAGTTCCT+CGG + chr5.3:29790416-29790435 None:intergenic 40.0%
!!! CTCAGTGAAGTGCTACTTTT+TGG + chr5.3:29790030-29790049 None:intergenic 40.0%
ACCTAAGGCTCGAAGAACTA+AGG + chr5.3:29791196-29791215 None:intergenic 45.0%
AGAGAATTGGACAGCCAACT+CGG - chr5.3:29791960-29791979 MS.gene045607:CDS 45.0%
AGATTTATGGCGGTGAACGT+AGG - chr5.3:29791253-29791272 MS.gene045607:intron 45.0%
ATGTCCTTTGACACCAGAAG+AGG - chr5.3:29791167-29791186 MS.gene045607:intron 45.0%
ATTCCCTTGGTGGAGAGAAA+AGG - chr5.3:29791110-29791129 MS.gene045607:intron 45.0%
ATTCGGATGCTTCACGAGAA+GGG - chr5.3:29790307-29790326 MS.gene045607:intron 45.0%
CCACTACTCTCGTATCCAAA+AGG + chr5.3:29790597-29790616 None:intergenic 45.0%
CCGAGGAACTCAAAAGATTG+AGG - chr5.3:29790413-29790432 MS.gene045607:intron 45.0%
CTAAGAGTTTCCTGCAATGG+TGG - chr5.3:29788666-29788685 MS.gene045607:intron 45.0%
CTAAGATGCAGTGCCACAAA+AGG + chr5.3:29790334-29790353 None:intergenic 45.0%
CTTGAATCAAATGCGTGCTG+CGG - chr5.3:29788689-29788708 MS.gene045607:intron 45.0%
CTTTCATTGGACCAGCTAAC+AGG + chr5.3:29789097-29789116 None:intergenic 45.0%
GACGCACGTCTAGCAAATAA+CGG - chr5.3:29790193-29790212 MS.gene045607:intron 45.0%
GCACTGTTGTCAAATAGCAG+CGG - chr5.3:29789295-29789314 MS.gene045607:intron 45.0%
GCCATGTTCCCATCATAAGT+AGG + chr5.3:29791622-29791641 None:intergenic 45.0%
GGAAGAAAAGTAATCGGAGG+CGG + chr5.3:29787854-29787873 None:intergenic 45.0%
GGAGGAAGAAAAGTAATCGG+AGG + chr5.3:29787857-29787876 None:intergenic 45.0%
GTTGGATCGAAAAAAGGTCG+TGG - chr5.3:29791862-29791881 MS.gene045607:intron 45.0%
TCTGAAGAGAGGAGATCACA+GGG - chr5.3:29791141-29791160 MS.gene045607:intron 45.0%
TCTTTGACCTGACAACCTAC+AGG - chr5.3:29788621-29788640 MS.gene045607:CDS 45.0%
TGGTGTAGGATAGCCAACAT+AGG - chr5.3:29790002-29790021 MS.gene045607:intron 45.0%
TGTCTCCCTACCAAAACCTA+AGG + chr5.3:29791211-29791230 None:intergenic 45.0%
TTGATTCAAGCCACCATTGC+AGG + chr5.3:29788679-29788698 None:intergenic 45.0%
! ATCTCCTTTTCTCTCCACCA+AGG + chr5.3:29791117-29791136 None:intergenic 45.0%
! CCCTACTTATGATGGGAACA+TGG - chr5.3:29791618-29791637 MS.gene045607:intron 45.0%
! CCTTTTGGATACGAGAGTAG+TGG - chr5.3:29790594-29790613 MS.gene045607:intron 45.0%
! GATCAGAGGGTATACGTTTG+AGG - chr5.3:29787660-29787679 MS.gene045607:CDS 45.0%
! GTTCTTCGAGCCTTAGGTTT+TGG - chr5.3:29791198-29791217 MS.gene045607:intron 45.0%
! TCATGTTTGGCTCCATGCAT+CGG - chr5.3:29790448-29790467 MS.gene045607:intron 45.0%
! TCTCCTTTTCTCTCCACCAA+GGG + chr5.3:29791116-29791135 None:intergenic 45.0%
! TTCTGAAGAGAGGAGATCAC+AGG - chr5.3:29791140-29791159 MS.gene045607:intron 45.0%
!! AAATGGCACGAGTTTGCTGA+TGG - chr5.3:29791917-29791936 MS.gene045607:CDS 45.0%
!! AGTAGGGATAAAGGTGTCAC+TGG + chr5.3:29791605-29791624 None:intergenic 45.0%
!! ATGGACATGTTGGCTTTCTC+AGG - chr5.3:29790361-29790380 MS.gene045607:intron 45.0%
!! TCGAGCCTTAGGTTTTGGTA+GGG - chr5.3:29791203-29791222 MS.gene045607:intron 45.0%
!! TTCGAGCCTTAGGTTTTGGT+AGG - chr5.3:29791202-29791221 MS.gene045607:intron 45.0%
!!! CAGCAAACTCGTGCCATTTT+AGG + chr5.3:29791916-29791935 None:intergenic 45.0%
!! GTATTATAATTAAATAATAA+CGG - chr5.3:29788270-29788289 MS.gene045607:intron 5.0%
AATCGACAGACCAAAGGAGG+AGG - chr5.3:29791994-29792013 MS.gene045607:CDS 50.0%
ACATAGACACTCGTGAGGGT+TGG + chr5.3:29792032-29792051 None:intergenic 50.0%
CCAGAATCACTCATCGCAGA+TGG - chr5.3:29791552-29791571 MS.gene045607:intron 50.0%
CCATCTGCGATGAGTGATTC+TGG + chr5.3:29791555-29791574 None:intergenic 50.0%
CCTCACATAGACACTCGTGA+GGG + chr5.3:29792036-29792055 None:intergenic 50.0%
GATTCGGATGCTTCACGAGA+AGG - chr5.3:29790306-29790325 MS.gene045607:intron 50.0%
GCAGCTGGTGAGATTTATGG+CGG - chr5.3:29791243-29791262 MS.gene045607:intron 50.0%
GCTTTCTCAGGCTGTACTCA+GGG - chr5.3:29790373-29790392 MS.gene045607:intron 50.0%
TCAGGTATGCATTCCCTTGG+TGG - chr5.3:29791100-29791119 MS.gene045607:intron 50.0%
TCATTGGACCAGCTAACAGG+AGG + chr5.3:29789094-29789113 None:intergenic 50.0%
TCCTCACATAGACACTCGTG+AGG + chr5.3:29792037-29792056 None:intergenic 50.0%
TCCTTTGACACCAGAAGAGG+CGG - chr5.3:29791170-29791189 MS.gene045607:intron 50.0%
TTGCTCAGAGAAAGAAGCCG+AGG - chr5.3:29790396-29790415 MS.gene045607:intron 50.0%
! CAGGTGTCGTGTCAATTACG+AGG - chr5.3:29790240-29790259 MS.gene045607:intron 50.0%
! CATCATTTTGGGCAGACCCT+AGG - chr5.3:29788859-29788878 MS.gene045607:intron 50.0%
! GATGGCCGCCTTGGATTTTA+TGG - chr5.3:29791570-29791589 MS.gene045607:intron 50.0%
! GCCGCTTTATGGAAAGCACA+AGG - chr5.3:29790150-29790169 MS.gene045607:intron 50.0%
! GCCTTAGTTCTTCGAGCCTT+AGG - chr5.3:29791192-29791211 MS.gene045607:intron 50.0%
! TCACGAGAAGGGACCTTTTG+TGG - chr5.3:29790318-29790337 MS.gene045607:intron 50.0%
!! CTGCAGATTCTGCCGCTTTA+TGG - chr5.3:29790139-29790158 MS.gene045607:intron 50.0%
AGAACTAAGGCCGCCTCTTC+TGG + chr5.3:29791183-29791202 None:intergenic 55.0%
CCCTCACGAGTGTCTATGTG+AGG - chr5.3:29792033-29792052 MS.gene045607:intron 55.0%
GGCTTTCTCAGGCTGTACTC+AGG - chr5.3:29790372-29790391 MS.gene045607:intron 55.0%
TGGAGATGCCTCCTGTTAGC+TGG - chr5.3:29789083-29789102 MS.gene045607:intron 55.0%
!! AGCTAACAGGAGGCATCTCC+AGG + chr5.3:29789084-29789103 None:intergenic 55.0%
!! GCTAACAGGAGGCATCTCCA+GGG + chr5.3:29789083-29789102 None:intergenic 55.0%
! GCCGCCTCTTCTGGTGTCAA+AGG + chr5.3:29791174-29791193 None:intergenic 60.0%
CTCATCGCAGATGGCCGCCT+TGG - chr5.3:29791561-29791580 MS.gene045607:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 29787650 29792105 29787650 ID=MS.gene045607
chr5.3 mRNA 29787650 29792105 29787650 ID=MS.gene045607.t1;Parent=MS.gene045607
chr5.3 exon 29792100 29792105 29792100 ID=MS.gene045607.t1.exon1;Parent=MS.gene045607.t1
chr5.3 CDS 29792100 29792105 29792100 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29791877 29792018 29791877 ID=MS.gene045607.t1.exon2;Parent=MS.gene045607.t1
chr5.3 CDS 29791877 29792018 29791877 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29791045 29791112 29791045 ID=MS.gene045607.t1.exon3;Parent=MS.gene045607.t1
chr5.3 CDS 29791045 29791112 29791045 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29790875 29790963 29790875 ID=MS.gene045607.t1.exon4;Parent=MS.gene045607.t1
chr5.3 CDS 29790875 29790963 29790875 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29790623 29790785 29790623 ID=MS.gene045607.t1.exon5;Parent=MS.gene045607.t1
chr5.3 CDS 29790623 29790785 29790623 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29789321 29789610 29789321 ID=MS.gene045607.t1.exon6;Parent=MS.gene045607.t1
chr5.3 CDS 29789321 29789610 29789321 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29788447 29788651 29788447 ID=MS.gene045607.t1.exon7;Parent=MS.gene045607.t1
chr5.3 CDS 29788447 29788651 29788447 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29788090 29788247 29788090 ID=MS.gene045607.t1.exon8;Parent=MS.gene045607.t1
chr5.3 CDS 29788090 29788247 29788090 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
chr5.3 exon 29787650 29787920 29787650 ID=MS.gene045607.t1.exon9;Parent=MS.gene045607.t1
chr5.3 CDS 29787650 29787920 29787650 ID=cds.MS.gene045607.t1;Parent=MS.gene045607.t1
Gene Sequence

>MS.gene045607

ATGGAGGTTAGATCAGAGGGTATACGTTTGAGGTTTTGGTTTGTTCGTTTGTGTTCAAGTATTGTTCTTTGGATTTGTTTGGTTCAGTTAGTGACAGTGAGTGAACTATGGCATTCACATTTCATTTCTGGGATTACTACTGGTATATATAACATTGCTCAAATTCAACTTCCTAAACAAAATAATGTCGTGGTTGATCAACCGCCTCCGATTACTTTTCTTCCTCCAAGTTAGTTTCTTGACTCTAATTCTAGTCCTTTTTGTATCAGATATGTTTTTTGTTTTAATTTGATGCTTTAATGCAACCTTTGATATAAATTAATTGATCAATGAAGCTTTTGTGTATTGTTGATTAGGTGTTATGTGACTTATATTAGGTGTTAGATGGTTATAATTGTGATTAACTGAATTCAAGTGTAAATTGTATTTGTGTTGGTAAATTTTGTTTTTTTGGTTATGTGCTTGTTTTAATGTTGAATTGTGGATTGTGAAATCTGTTGGGAGCATGAATGATGTATGATGATTGTTAAGTGTTGTTCTATAGTGGTTTTTGAAATTGTCCTGGGGTTATTATAATTTGAAATGCTGATTCTAGGGTGTTACATTTATAGATAACTGTCGTATTATAATTAAATAATAACGGATATGATTATAAATAAAATTTAGTGAAATAAGTCACTATCGTTTATTTATTTTTAGATGATAAATCAATGTTCAATAAAAGGGATCTCCGGATATGCCCTTTTTAATAAGGTACATCTCAGGATATATGACGAGAACATTAGAAGTTACAAATTGAGAGAAAATCAGATCTTAATCTTAGTTGATACTAAGTGTTGCCATTAATTTTGAGGATAGGTATAGGATATAAAGCAATATTGCTTATCGATGAATGGTTCTGATGGATAGGTATAGAATATTTTTGATTGTTTTACTTTTATTTTCTCACTCATTTTGGTAAATATTAAAGCTCTTTGACCTGACAACCTACAGGAAATTATACAAGTAATGGTTTTCTAAGAGTTTCCTGCAATGGTGGCTTGAATCAAATGCGTGCTGCGGTTTGTACTTCCTATTCTAAAATTTATCTGTTTGTATGATATCATAAGCTTAAATACTCATTTAGTGGCATGGTATTTCAGATATGTGACATGGTGACAATTGCTCGATTTTTGAATCTCACATTGATCGTGCCAGAGCTTGATAAGACATCATTTTGGGCAGACCCTAGGTATATACTTTGTTCTGATTTTTATTGTTTGAGTATCCTCTAATTTAACCTCCATATCATTCTAAAGTTGTGTAGTTTTCTTTTTGCAGTAATTTTGAGGACATTTTTGATGTGAAGCATTTCATTGATTCTTTACGAGACGAAGTTCGAATAGTGAAAAGAGTTCCTAAAAAGTTTAGCAGTAAATATGGATATTCTACCCTGGAGATGCCTCCTGTTAGCTGGTCCAATGAAAGATATTACTTGGAGCAGGTGTGTTTCTTTTCTGAGCTGCGTTTGAGAAAACAGCTGAATAGTATTGTTCTAACTATTTGTATTTTAAGGTTTGATAATATATGATTGATTAATGATTCTTGACCTATATTTTTGGATAGTATGGCTTTCCCCAAATTGTTAATTTTTCAATGCTTTTCAGCACTGTTGTCAAATAGCAGCGGTAGCGCTATATCATAGCAGATTTTGATGAATCTTCTATGAAAACTTCGAAGCTATCCTAGTTTCGTTATTAGGGCAATAGCGACCGCTATTCCAGTTTCTGCTAGTTGATTCAATGGCAATAGTGGAATAAAATAGAATTATAGGGCTATTTTTTGAAGAATAAAAATGAAGAATCTGCGCGGGTGCCAAACATGACCTATTGTCTTATTAGAAAACTGAAAGATTCAGTGTGTATTACTTTTCAATATTAAGCTATTTCTACCTTTTAAAGAACATGACCTATTCACCATATATGTAAGCCTTTCAAAATATAAGCCATGTTCTGCTTTATTCCCTTTTTATTTGTCTGCAACATGCCTTTTTTTTTTTTTTTTTTTCCCTTTCAAACATATAATTGACTTATTTCAACTGCTATGCGGCTTCCACTATTTGCCCACAATGCTATCTTGTATTTCACATAGCGGATTTTTGGCGTTCCTTTATTTTCTGCAATCCACTATTGATAACACTGATTTTCAAAGAAGTTATGGGAGCTTTTGTGTCCTTTCCAACTTGATTGGAACTTTAGAATTATCGATAATTATGAATCAGTCACATGAAGAAATTTATAGTTATGGGAAGAAATTTATAGTTGTTTTCCTATTTAGTAAACTTGGTTTTTAGCAACTAAAATAAGTTGCTTTTGGTGTAGGATAGCCAACATAGGTTCCAAAAAGTAGCACTTCACTGAGTGTATAAAAGTATGATAAGATATAACGATTTTTTCTCTAACTTTGAGAAGTATATACATTTTGTTTAATCCAACACTATTGACTCTACACTGCAGATTCTGCCGCTTTATGGAAAGCACAAGGTGTTACACTTCAACAGAACTGACGCACGTCTAGCAAATAACGGTCTCCCACTTGATCTACAGAAACTCAGGTGTCGTGTCAATTACGAGGCTATTAAATTCACTCCTCAAATTGAGAATTTAGGGCGAAAATTGATTCGGATGCTTCACGAGAAGGGACCTTTTGTGGCACTGCATCTTAGATATGAGATGGACATGTTGGCTTTCTCAGGCTGTACTCAGGGTTGCTCAGAGAAAGAAGCCGAGGAACTCAAAAGATTGAGGTATTTTTATGTTTCATGTTTGGCTCCATGCATCGGCTTCTAATTCATTCTTGCTTCTGTAATTGAGGATAAGAGGGATTTGGATCTTCTCGGTTTCTGAATAACAGGATATGTTCCTCATATTAGTAAATGATATTTACTTGTGCTCTGATAGAGAAACCTTTTGGATACGAGAGTAGTGGTTATGTATCTCATGAGTTATTAAATTTAGAAAATCTCTTCTGTTTTTATTTTCCTTCTACGGTTTTTCGTTACAAAACTGTCATATTTTTTCAATCCATTTCTTGTTTTCATAGACTTTGTACATGCAACACTGACAACAATTTTTTTATTTATTTTTAGATATTAAAGCCCTTTTACTTTTGGGAAACGTTTTCTGTTTGTGCTTTTTAATTACAAAGCTGTCAGATTGTTTTCAATCCATTTATTGTGTTTTTAGTATTATCTCTTGTACACGTGGTGGATTTGTAATTCAAAAAGGAAAACATGAAATGAAATCAGAAACATTTTCTTAAATTGAACAGACCCTTATTTACTTGATTATATGCTAACAAATACTATTGTGATTTAAGATTCTGTGGCACCCTTACAGCAATTAGATATCTATATGACATCAAATGTTGATTACTTGATTATATGCTAACAAAACTGTCCCTTTTTGTAATTCAGGTATGCATTCCCTTGGTGGAGAGAAAAGGAGATAATTTCTGAAGAGAGGAGATCACAGGGTCTATGTCCTTTGACACCAGAAGAGGCGGCCTTAGTTCTTCGAGCCTTAGGTTTTGGTAGGGAGACACCGATATATATTGCAGCTGGTGAGATTTATGGCGGTGAACGTAGGCTTGCACAACTCAGAGCAGCATTTCCCCAACTTGTGAGTTTGTCAACATTTTAACTTCCTTCCATTTTTCTGCTCATTGTTTGAGACATCGCACAACTGTTGAAAATTGTTCTTGCGCTCATTAATGGTTGGACCTGATCTGAAAGATGCATTTTCTCTCAATGATCCTCATTTTCAGTCTTTGAAATTATTCTGCTGTGCTACATCTGACTTTCTGTGTTTGCAATTTCAGGTGAAAAAGGAAATGTTGCTGACACGTGATGATTTGCAGCAGTTCCAGAATCACTCATCGCAGATGGCCGCCTTGGATTTTATGGTTTCAGTAGCCAGTGACACCTTTATCCCTACTTATGATGGGAACATGGCAAAACTTGTGGAAGGCCATCGAAGGTATGTATTTACCCGAATGTTGCTGACATGTTATTAATACATTATTGTCGATACATTATCTATTATTGAAAACATTTAGAGTGACTAAAGTGAAATTTGCGTAATAACAGTGTAAGTGCATTGTTGGTATTATTTCTCTTCAATTTCTAACTAATTTGTTCGTCTGCAGGTATTCCGATTTTAGAAAAACAATCTTGTTGGATCGAAAAAAGGTCGTGGAATTGGTTGATATGCATCATAATGGAACCCTAAAATGGCACGAGTTTGCTGATGGCGTAAAACAAGTTCATGAAAAGAGAATTGGACAGCCAACTCGGCGAAAAGTTATAATCGACAGACCAAAGGAGGAGGACTATTTCTATGCCAACCCTCACGAGTGTCTATGTGAGGAAAGAAATTGTGATGAGTTTCTAGGTCATCACAACTCTAGTCAAGTATAG
Protein sequence

>MS.gene045607.t1

MELVTVSELWHSHFISGITTGIYNIAQIQLPKQNNVVVDQPPPITFLPPRNYTSNGFLRVSCNGGLNQMRAAICDMVTIARFLNLTLIVPELDKTSFWADPSNFEDIFDVKHFIDSLRDEVRIVKRVPKKFSSKYGYSTLEMPPVSWSNERYYLEQILPLYGKHKVLHFNRTDARLANNGLPLDLQKLRCRVNYEAIKFTPQIENLGRKLIRMLHEKGPFVALHLRYEMDMLAFSGCTQGCSEKEAEELKRLRYAFPWWREKEIISEERRSQGLCPLTPEEAALVLRALGFGRETPIYIAAGEIYGGERRLAQLRAAFPQLVKKEMLLTRDDLQQFQNHSSQMAALDFMVSVASDTFIPTYDGNMAKLVEGHRRYSDFRKTILLDRKKVVELVDMHHNGTLKWHEFADGVKQVHEKRIGQPTRRKVIIDRPKEEDYFYANPHECLCEERNCDEFLGHHNSSQV