Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018678.t1 | XP_013449918.1 | 99.1 | 212 | 2 | 0 | 1 | 212 | 1 | 212 | 4.30E-74 | 287.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018678.t1 | Q941D5 | 87.6 | 210 | 26 | 0 | 1 | 210 | 1 | 210 | 5.0e-63 | 242.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018678.t1 | A0A072U3L4 | 99.1 | 212 | 2 | 0 | 1 | 212 | 1 | 212 | 3.1e-74 | 287.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018678 | MS.gene09166 | PPI |
| MS.gene018678 | MS.gene98009 | PPI |
| MS.gene018678 | MS.gene033909 | PPI |
| MS.gene018678 | MS.gene09111 | PPI |
| MS.gene018678 | MS.gene051184 | PPI |
| MS.gene018678 | MS.gene007726 | PPI |
| MS.gene018678 | MS.gene75244 | PPI |
| MS.gene018678 | MS.gene049786 | PPI |
| MS.gene018678 | MS.gene025196 | PPI |
| MS.gene018678 | MS.gene75911 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018678.t1 | MTR_7g097170 | 98.585 | 212 | 3 | 0 | 1 | 212 | 1 | 212 | 2.05e-153 | 424 |
| MS.gene018678.t1 | MTR_1g069715 | 81.604 | 212 | 39 | 0 | 1 | 212 | 466 | 677 | 9.49e-124 | 365 |
| MS.gene018678.t1 | MTR_2g047875 | 78.037 | 214 | 43 | 1 | 1 | 210 | 1 | 214 | 3.13e-112 | 320 |
| MS.gene018678.t1 | MTR_2g041190 | 44.037 | 218 | 112 | 2 | 3 | 210 | 4 | 221 | 7.26e-44 | 146 |
| MS.gene018678.t1 | MTR_8g019700 | 47.727 | 176 | 92 | 0 | 3 | 178 | 4 | 179 | 4.61e-41 | 139 |
| MS.gene018678.t1 | MTR_4g057565 | 33.333 | 186 | 114 | 2 | 1 | 181 | 5 | 185 | 5.94e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018678.t1 | AT1G03950 | 85.714 | 210 | 30 | 0 | 1 | 210 | 1 | 210 | 4.75e-131 | 367 |
| MS.gene018678.t1 | AT5G44560 | 73.636 | 220 | 48 | 1 | 1 | 210 | 1 | 220 | 1.06e-111 | 318 |
| MS.gene018678.t1 | AT5G44560 | 73.500 | 200 | 43 | 1 | 21 | 210 | 1 | 200 | 1.43e-100 | 290 |
| MS.gene018678.t1 | AT5G44560 | 77.528 | 178 | 40 | 0 | 1 | 178 | 1 | 178 | 5.97e-98 | 283 |
| MS.gene018678.t1 | AT5G44560 | 78.261 | 138 | 30 | 0 | 1 | 138 | 1 | 138 | 1.25e-74 | 222 |
| MS.gene018678.t1 | AT2G06530 | 47.273 | 220 | 105 | 4 | 2 | 210 | 4 | 223 | 1.53e-47 | 156 |
| MS.gene018678.t1 | AT2G06530 | 46.766 | 201 | 96 | 4 | 21 | 210 | 2 | 202 | 9.08e-41 | 138 |
| MS.gene018678.t1 | AT5G22950 | 30.870 | 230 | 135 | 4 | 1 | 211 | 5 | 229 | 2.48e-19 | 83.2 |
Find 46 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTGTGCCGATTGTTTC+TGG | 0.092577 | 7.1:-10617218 | None:intergenic |
| ATAACTTTGGCTTGCTTTGC+TGG | 0.189100 | 7.1:-10617186 | None:intergenic |
| CTTTGCTGCGATTCTCCCTT+TGG | 0.282052 | 7.1:-10618440 | None:intergenic |
| GCAACAGATTGCTAATCTTC+AGG | 0.286548 | 7.1:+10616145 | MS.gene018678:CDS |
| ATAGGTATTGAGAGGGAAAT+TGG | 0.295401 | 7.1:+10615759 | MS.gene018678:intron |
| ACCTTTGGCGGTGGGTTTCT+TGG | 0.303398 | 7.1:-10615528 | None:intergenic |
| TTTGCTGCGATTCTCCCTTT+GGG | 0.310942 | 7.1:-10618439 | None:intergenic |
| GGCAATGTCAGCTATGAATA+AGG | 0.369472 | 7.1:+10616384 | MS.gene018678:CDS |
| TACTAGCTCGTCAGCTGATA+AGG | 0.390691 | 7.1:+10616117 | MS.gene018678:CDS |
| CTGGAATTCCTGCATAACTT+TGG | 0.413362 | 7.1:-10617199 | None:intergenic |
| GGAAATTGGATCATTACAAT+TGG | 0.414552 | 7.1:+10615773 | MS.gene018678:CDS |
| TGCTAATCTTCAGGGTAGTC+GGG | 0.416103 | 7.1:+10616154 | MS.gene018678:CDS |
| TGATGACCTTGAGAAGCGTT+TGG | 0.421971 | 7.1:+10618707 | MS.gene018678:CDS |
| GCACATTCTTCTGTTGCTGT+TGG | 0.431120 | 7.1:+10616343 | MS.gene018678:CDS |
| TCTGTTGCTGTTGGCATGAA+AGG | 0.439539 | 7.1:+10616352 | MS.gene018678:CDS |
| TAACAGGTGCTTGATGAAAT+CGG | 0.440062 | 7.1:+10618292 | MS.gene018678:intron |
| TTGCTGCGATTCTCCCTTTG+GGG | 0.441450 | 7.1:-10618438 | None:intergenic |
| CAACAGATTGCTAATCTTCA+GGG | 0.455803 | 7.1:+10616146 | MS.gene018678:CDS |
| TTGCTAATCTTCAGGGTAGT+CGG | 0.468100 | 7.1:+10616153 | MS.gene018678:CDS |
| TGGCATGAAAGGCGCTACTA+AGG | 0.493496 | 7.1:+10616363 | MS.gene018678:CDS |
| CGGTGTCGATATTGCCTCAC+AGG | 0.505099 | 7.1:+10618312 | MS.gene018678:CDS |
| AGAAGAAGAACCTTTGGCGG+TGG | 0.519227 | 7.1:-10615537 | None:intergenic |
| ATTAAGAGAACTGCTAAGAC+AGG | 0.519875 | 7.1:+10615917 | MS.gene018678:CDS |
| CTCGTCAGCTGATAAGGCTT+AGG | 0.530813 | 7.1:+10616123 | MS.gene018678:CDS |
| AAAGCAAGCCAAAGTTATGC+AGG | 0.535984 | 7.1:+10617191 | MS.gene018678:CDS |
| TGACCTTGAGAAGCGTTTGG+CGG | 0.541826 | 7.1:+10618710 | MS.gene018678:CDS |
| GAAGAAGAACCTTTGGCGGT+GGG | 0.543040 | 7.1:-10615536 | None:intergenic |
| ACCAAGAAACCCACCGCCAA+AGG | 0.550200 | 7.1:+10615527 | MS.gene018678:CDS |
| CCAGAAACAATCGGCACAGA+TGG | 0.552247 | 7.1:+10617218 | MS.gene018678:CDS |
| GCAGGAATTCCAGAAACAAT+CGG | 0.554202 | 7.1:+10617209 | MS.gene018678:CDS |
| GCAAAGAATACTGAAAATGT+TGG | 0.554829 | 7.1:+10618457 | MS.gene018678:CDS |
| AGAATACTGAAAATGTTGGC+AGG | 0.560171 | 7.1:+10618461 | MS.gene018678:CDS |
| TGCTGCGATTCTCCCTTTGG+GGG | 0.568717 | 7.1:-10618437 | None:intergenic |
| AGATGTCATAGATGATGCCT+TGG | 0.571244 | 7.1:+10617356 | MS.gene018678:CDS |
| TTCAGCTTCATCATCATCCA+AGG | 0.587316 | 7.1:-10617373 | None:intergenic |
| AGAAGAAGAAGAACCTTTGG+CGG | 0.589246 | 7.1:-10615540 | None:intergenic |
| GAGCCGCCAAACGCTTCTCA+AGG | 0.592287 | 7.1:-10618713 | None:intergenic |
| TCATATATATAGGTATTGAG+AGG | 0.599716 | 7.1:+10615751 | MS.gene018678:intron |
| AGAGAATAGATTACCTCTAG+TGG | 0.604125 | 7.1:-10615670 | None:intergenic |
| GGATGATGATGAAGCTGAAG+AGG | 0.605718 | 7.1:+10617377 | MS.gene018678:CDS |
| GGTAGTCGGGCTCAGATGAG+AGG | 0.622685 | 7.1:+10616167 | MS.gene018678:CDS |
| CATATATATAGGTATTGAGA+GGG | 0.628943 | 7.1:+10615752 | MS.gene018678:intron |
| GAAATGACTAACGCCACTAG+AGG | 0.662249 | 7.1:+10615657 | MS.gene018678:CDS |
| AGGCATAGCAACTCACACGC+AGG | 0.676531 | 7.1:+10616187 | MS.gene018678:CDS |
| AACTGCTAAGACAGGAAACG+AGG | 0.681032 | 7.1:+10615925 | MS.gene018678:CDS |
| AAAGCTTATTCCTACCTGTG+AGG | 0.707349 | 7.1:-10618326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATTATAATAAA+AGG | - | chr7.1:10617441-10617460 | None:intergenic | 0.0% |
| !! | TTAAATTAATTAATAAAATT+AGG | - | chr7.1:10615726-10615745 | None:intergenic | 0.0% |
| !! | TAAAGTTAGTAATAATAATA+TGG | + | chr7.1:10615856-10615875 | MS.gene018678:intron | 10.0% |
| !! | TTTAATACTATCATATATAT+AGG | + | chr7.1:10615741-10615760 | MS.gene018678:intron | 10.0% |
| !!! | ATTTATAAATTAGTTTAAGA+GGG | - | chr7.1:10618030-10618049 | None:intergenic | 10.0% |
| !!! | TATTTATAAATTAGTTTAAG+AGG | - | chr7.1:10618031-10618050 | None:intergenic | 10.0% |
| !!! | TAGCATTTGATTTTTATTTA+TGG | + | chr7.1:10616816-10616835 | MS.gene018678:intron | 15.0% |
| !! | GTTAAACAAAACATTGATAT+TGG | + | chr7.1:10617085-10617104 | MS.gene018678:intron | 20.0% |
| !!! | AAACAAAAGTATAGTTACAT+GGG | + | chr7.1:10617925-10617944 | MS.gene018678:intron | 20.0% |
| !!! | AAATGAAAATTCTTTTTTGG+AGG | + | chr7.1:10616742-10616761 | MS.gene018678:intron | 20.0% |
| !!! | AAATTTGATGTTTTATTCTC+AGG | + | chr7.1:10616082-10616101 | MS.gene018678:intron | 20.0% |
| !!! | AACTTTCTTATTGTTTTTAG+AGG | - | chr7.1:10618513-10618532 | None:intergenic | 20.0% |
| !!! | AATTTGATGTTTTATTCTCA+GGG | + | chr7.1:10616083-10616102 | MS.gene018678:intron | 20.0% |
| !!! | GTATTTTATTTGTACTCTTT+TGG | + | chr7.1:10618401-10618420 | MS.gene018678:intron | 20.0% |
| !!! | GTCCATTTTCATAATATAAA+GGG | + | chr7.1:10616443-10616462 | MS.gene018678:intron | 20.0% |
| !!! | TATCAATGTTTTGTTTAACT+CGG | - | chr7.1:10617084-10617103 | None:intergenic | 20.0% |
| !!! | TGCAAATGAAAATTCTTTTT+TGG | + | chr7.1:10616739-10616758 | MS.gene018678:intron | 20.0% |
| !!! | TGTCCATTTTCATAATATAA+AGG | + | chr7.1:10616442-10616461 | MS.gene018678:intron | 20.0% |
| !!! | TTTTCTAGAATTTTACAAGT+TGG | + | chr7.1:10617265-10617284 | MS.gene018678:intron | 20.0% |
| ! | AAGAAACACAACAAAAACAA+AGG | - | chr7.1:10616231-10616250 | None:intergenic | 25.0% |
| ! | AATCATTGTTTACACTTCAA+TGG | + | chr7.1:10617300-10617319 | MS.gene018678:intron | 25.0% |
| ! | AATGGTGTAGAAAATATTTG+TGG | - | chr7.1:10617114-10617133 | None:intergenic | 25.0% |
| ! | ACAAGTTCAAATTTCTTAAG+CGG | + | chr7.1:10618630-10618649 | MS.gene018678:intron | 25.0% |
| ! | AGAAACACAACAAAAACAAA+GGG | - | chr7.1:10616230-10616249 | None:intergenic | 25.0% |
| ! | ATATTGTTCCAAAACTTGAT+TGG | + | chr7.1:10616673-10616692 | MS.gene018678:intron | 25.0% |
| ! | CAATAAGAAAGTTAAGAGAA+AGG | + | chr7.1:10618520-10618539 | MS.gene018678:intron | 25.0% |
| ! | CACCCTTTATATTATGAAAA+TGG | - | chr7.1:10616448-10616467 | None:intergenic | 25.0% |
| ! | GTAAATAAACCAATCCAAAT+AGG | - | chr7.1:10617707-10617726 | None:intergenic | 25.0% |
| ! | GTAATAACATCAAAATTCCA+AGG | - | chr7.1:10618676-10618695 | None:intergenic | 25.0% |
| ! | TATTGTTCCAAAACTTGATT+GGG | + | chr7.1:10616674-10616693 | MS.gene018678:intron | 25.0% |
| ! | TCAAATAAGTTAATTCGAAC+AGG | + | chr7.1:10616052-10616071 | MS.gene018678:intron | 25.0% |
| ! | TTAAAATGACCTGTAGTTTA+TGG | + | chr7.1:10617521-10617540 | MS.gene018678:intron | 25.0% |
| ! | TTATCTACTGACATAAACAA+AGG | - | chr7.1:10616030-10616049 | None:intergenic | 25.0% |
| ! | TTATTCACAAAGAGTAAGAT+GGG | + | chr7.1:10618184-10618203 | MS.gene018678:intron | 25.0% |
| ! | TTTATTCACAAAGAGTAAGA+TGG | + | chr7.1:10618183-10618202 | MS.gene018678:intron | 25.0% |
| !! | CAAACAAAAGTATAGTTACA+TGG | + | chr7.1:10617924-10617943 | MS.gene018678:intron | 25.0% |
| !! | CATGTAACTATACTTTTGTT+TGG | - | chr7.1:10617926-10617945 | None:intergenic | 25.0% |
| !! | CATTTTCATAATATAAAGGG+TGG | + | chr7.1:10616446-10616465 | MS.gene018678:intron | 25.0% |
| !! | TAGAGTTTTCATGAATTTTG+AGG | + | chr7.1:10616776-10616795 | MS.gene018678:intron | 25.0% |
| !! | TATGATATTTGACTTAGCTA+TGG | + | chr7.1:10616291-10616310 | MS.gene018678:intron | 25.0% |
| !! | TGTAATAGCAACATTTTGTT+TGG | + | chr7.1:10616698-10616717 | MS.gene018678:intron | 25.0% |
| !! | TGTTCATTTGCTAAATATTG+TGG | + | chr7.1:10616925-10616944 | MS.gene018678:intron | 25.0% |
| !!! | ATCTGCAAATTTTTAGTCAT+AGG | + | chr7.1:10615961-10615980 | MS.gene018678:intron | 25.0% |
| !!! | ATTTTGATGTTATTACAGCT+CGG | + | chr7.1:10618680-10618699 | MS.gene018678:intron | 25.0% |
| !!! | CATATATATAGGTATTGAGA+GGG | + | chr7.1:10615752-10615771 | MS.gene018678:intron | 25.0% |
| !!! | CTTATTGTTTTTAGAGGATA+GGG | - | chr7.1:10618507-10618526 | None:intergenic | 25.0% |
| !!! | TATGGATTGTTTGTTTTGTT+AGG | + | chr7.1:10615874-10615893 | MS.gene018678:intron | 25.0% |
| !!! | TCATATATATAGGTATTGAG+AGG | + | chr7.1:10615751-10615770 | MS.gene018678:intron | 25.0% |
| !!! | TCTTATTGTTTTTAGAGGAT+AGG | - | chr7.1:10618508-10618527 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGACTTGTGTTT+GGG | + | chr7.1:10616255-10616274 | MS.gene018678:intron | 25.0% |
| !!! | TTTTTTTGTTGACTTGTGTT+TGG | + | chr7.1:10616254-10616273 | MS.gene018678:intron | 25.0% |
| AAATTATCTCCACAAGATCA+TGG | - | chr7.1:10617968-10617987 | None:intergenic | 30.0% | |
| AACAATATTAAGGGTTGCTA+TGG | + | chr7.1:10616882-10616901 | MS.gene018678:intron | 30.0% | |
| AACGGTAAAAGACTGAAAAA+TGG | - | chr7.1:10617132-10617151 | None:intergenic | 30.0% | |
| AAGGGACTTCAGAAATTAAA+AGG | + | chr7.1:10617008-10617027 | MS.gene018678:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr7.1:10617789-10617808 | None:intergenic | 30.0% | |
| AATTATGCTTCTCTGTTTAC+AGG | + | chr7.1:10617468-10617487 | MS.gene018678:intron | 30.0% | |
| ATCTTGTGGAGATAATTTAG+GGG | + | chr7.1:10617970-10617989 | MS.gene018678:intron | 30.0% | |
| ATTGTTCCAAAACTTGATTG+GGG | + | chr7.1:10616675-10616694 | MS.gene018678:intron | 30.0% | |
| CTAATAATCAGTGAAAGCTT+AGG | + | chr7.1:10617993-10618012 | MS.gene018678:intron | 30.0% | |
| GAATCCAACAAATTAGGAAA+CGG | - | chr7.1:10617150-10617169 | None:intergenic | 30.0% | |
| GATCTTGTGGAGATAATTTA+GGG | + | chr7.1:10617969-10617988 | MS.gene018678:intron | 30.0% | |
| GCAAAGAATACTGAAAATGT+TGG | + | chr7.1:10618457-10618476 | MS.gene018678:CDS | 30.0% | |
| GCTAATATCACCTTAATGTA+AGG | - | chr7.1:10618223-10618242 | None:intergenic | 30.0% | |
| GGAAATTGGATCATTACAAT+TGG | + | chr7.1:10615773-10615792 | MS.gene018678:CDS | 30.0% | |
| GGAGCAATGAACAATATTAA+GGG | + | chr7.1:10616873-10616892 | MS.gene018678:intron | 30.0% | |
| TAGTTACAAGGTTTAAGGAA+TGG | + | chr7.1:10618157-10618176 | MS.gene018678:intron | 30.0% | |
| TCACTTAGTTACAAGGTTTA+AGG | + | chr7.1:10618152-10618171 | MS.gene018678:intron | 30.0% | |
| TGATCTTGTGGAGATAATTT+AGG | + | chr7.1:10617968-10617987 | MS.gene018678:intron | 30.0% | |
| TGCAATGAATCCAACAAATT+AGG | - | chr7.1:10617156-10617175 | None:intergenic | 30.0% | |
| TGGAGCAATGAACAATATTA+AGG | + | chr7.1:10616872-10616891 | MS.gene018678:intron | 30.0% | |
| TTGAAGAACTGCTATTATCA+AGG | - | chr7.1:10617057-10617076 | None:intergenic | 30.0% | |
| TTTATTCTTGATTTCCCCAA+GGG | - | chr7.1:10617638-10617657 | None:intergenic | 30.0% | |
| ! | AATTAGTTTAAGAGGGTATG+CGG | - | chr7.1:10618023-10618042 | None:intergenic | 30.0% |
| ! | CCTATTTTGTATCCTAACTT+CGG | + | chr7.1:10617604-10617623 | MS.gene018678:intron | 30.0% |
| ! | TTTACCGTTTCCTAATTTGT+TGG | + | chr7.1:10617143-10617162 | MS.gene018678:intron | 30.0% |
| ! | TTTTATTCTTGATTTCCCCA+AGG | - | chr7.1:10617639-10617658 | None:intergenic | 30.0% |
| ! | TTTTGATGTTATTACAGCTC+GGG | + | chr7.1:10618681-10618700 | MS.gene018678:intron | 30.0% |
| !! | TTTAATTGATTTTCCTGCAG+AGG | + | chr7.1:10615614-10615633 | MS.gene018678:intron | 30.0% |
| !! | TTTGCAAGTTTTAATGACCT+TGG | + | chr7.1:10618656-10618675 | MS.gene018678:intron | 30.0% |
| AAGAGAAGAAGAAGAACCTT+TGG | - | chr7.1:10615546-10615565 | None:intergenic | 35.0% | |
| AAGAGCTTGTGAGATTGTTT+GGG | + | chr7.1:10617733-10617752 | MS.gene018678:intron | 35.0% | |
| AGAATACTGAAAATGTTGGC+AGG | + | chr7.1:10618461-10618480 | MS.gene018678:CDS | 35.0% | |
| AGAGAATAGATTACCTCTAG+TGG | - | chr7.1:10615673-10615692 | None:intergenic | 35.0% | |
| ATCAAGCACCTGTTAAGAAA+AGG | - | chr7.1:10618287-10618306 | None:intergenic | 35.0% | |
| ATTAAGAGAACTGCTAAGAC+AGG | + | chr7.1:10615917-10615936 | MS.gene018678:CDS | 35.0% | |
| CAACAGATTGCTAATCTTCA+GGG | + | chr7.1:10616146-10616165 | MS.gene018678:CDS | 35.0% | |
| CAGACTGTCATGATTTCTTA+TGG | + | chr7.1:10618124-10618143 | MS.gene018678:intron | 35.0% | |
| CATGTTAGTCCATAAACTAC+AGG | - | chr7.1:10617533-10617552 | None:intergenic | 35.0% | |
| CCGAAGTTAGGATACAAAAT+AGG | - | chr7.1:10617607-10617626 | None:intergenic | 35.0% | |
| CTACTAGGTGAAGTTAGTTA+AGG | + | chr7.1:10617681-10617700 | MS.gene018678:intron | 35.0% | |
| CTTAACTAACTTCACCTAGT+AGG | - | chr7.1:10617683-10617702 | None:intergenic | 35.0% | |
| CTTGTAATTCGCGAAGAATT+TGG | + | chr7.1:10618588-10618607 | MS.gene018678:intron | 35.0% | |
| GAAGTTAGTTAAGGCCTATT+TGG | + | chr7.1:10617690-10617709 | MS.gene018678:intron | 35.0% | |
| GAATTCAAGGCCTTACATTA+AGG | + | chr7.1:10618210-10618229 | MS.gene018678:intron | 35.0% | |
| GTAAGATGGGAATGAATTCA+AGG | + | chr7.1:10618197-10618216 | MS.gene018678:intron | 35.0% | |
| GTCTTCAGAAGGAAACATAA+TGG | - | chr7.1:10618084-10618103 | None:intergenic | 35.0% | |
| TAACAGGTGCTTGATGAAAT+CGG | + | chr7.1:10618292-10618311 | MS.gene018678:intron | 35.0% | |
| TAAGAGCTTGTGAGATTGTT+TGG | + | chr7.1:10617732-10617751 | MS.gene018678:intron | 35.0% | |
| TAGTTAAGGCCTATTTGGAT+TGG | + | chr7.1:10617695-10617714 | MS.gene018678:intron | 35.0% | |
| TCAAGCACCTGTTAAGAAAA+GGG | - | chr7.1:10618286-10618305 | None:intergenic | 35.0% | |
| TCTGATTTCTTAAGCTATCC+TGG | - | chr7.1:10617824-10617843 | None:intergenic | 35.0% | |
| TGAAGTTCAGAAGTAGTTTC+AGG | - | chr7.1:10618106-10618125 | None:intergenic | 35.0% | |
| ! | ATATCATCTGACAGTGCTTT+TGG | + | chr7.1:10618366-10618385 | MS.gene018678:intron | 35.0% |
| ! | ATTACACCCCAATCAAGTTT+TGG | - | chr7.1:10616684-10616703 | None:intergenic | 35.0% |
| ! | ATTAGTTTAAGAGGGTATGC+GGG | - | chr7.1:10618022-10618041 | None:intergenic | 35.0% |
| ! | CTTATTTCTTAAAGCTCTCC+AGG | + | chr7.1:10617803-10617822 | MS.gene018678:intron | 35.0% |
| ! | TCACTTACCCTTTTCTTAAC+AGG | + | chr7.1:10618276-10618295 | MS.gene018678:intron | 35.0% |
| !! | ATAGGTATTGAGAGGGAAAT+TGG | + | chr7.1:10615759-10615778 | MS.gene018678:intron | 35.0% |
| !! | TGCATAAGCTATTTCTGTGA+CGG | - | chr7.1:10617856-10617875 | None:intergenic | 35.0% |
| !!! | CTTTTTTGGAGGTGATATAG+AGG | + | chr7.1:10616753-10616772 | MS.gene018678:intron | 35.0% |
| AAAGCAAGCCAAAGTTATGC+AGG | + | chr7.1:10617191-10617210 | MS.gene018678:CDS | 40.0% | |
| AAAGCTTATTCCTACCTGTG+AGG | - | chr7.1:10618329-10618348 | None:intergenic | 40.0% | |
| ACCTTGTGTTACAATCCTTG+AGG | + | chr7.1:10617556-10617575 | MS.gene018678:intron | 40.0% | |
| AGAACTGCTATTATCAAGGC+TGG | - | chr7.1:10617053-10617072 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAACCTTTGG+CGG | - | chr7.1:10615543-10615562 | None:intergenic | 40.0% | |
| AGATGTCATAGATGATGCCT+TGG | + | chr7.1:10617356-10617375 | MS.gene018678:CDS | 40.0% | |
| AGGATAGGGAAAGAGTTACA+CGG | - | chr7.1:10618493-10618512 | None:intergenic | 40.0% | |
| CAAAGGGTTCAAGTGAACAA+TGG | - | chr7.1:10616214-10616233 | None:intergenic | 40.0% | |
| CCTTGTGTTACAATCCTTGA+GGG | + | chr7.1:10617557-10617576 | MS.gene018678:intron | 40.0% | |
| CTACCAAATCGTATCCTACT+AGG | + | chr7.1:10617666-10617685 | MS.gene018678:intron | 40.0% | |
| CTGGAATTCCTGCATAACTT+TGG | - | chr7.1:10617202-10617221 | None:intergenic | 40.0% | |
| GATTTGAATCTGTGACATCC+AGG | + | chr7.1:10616591-10616610 | MS.gene018678:intron | 40.0% | |
| GCAACAGATTGCTAATCTTC+AGG | + | chr7.1:10616145-10616164 | MS.gene018678:CDS | 40.0% | |
| GCAGGAATTCCAGAAACAAT+CGG | + | chr7.1:10617209-10617228 | MS.gene018678:CDS | 40.0% | |
| GGCAATGTCAGCTATGAATA+AGG | + | chr7.1:10616384-10616403 | MS.gene018678:CDS | 40.0% | |
| GTTGGATTCATTGCAGCAAA+TGG | + | chr7.1:10617161-10617180 | MS.gene018678:intron | 40.0% | |
| TACACCAGGTTTCCAAGAAA+GGG | + | chr7.1:10616509-10616528 | MS.gene018678:intron | 40.0% | |
| TCACCTAGTAGGATACGATT+TGG | - | chr7.1:10617672-10617691 | None:intergenic | 40.0% | |
| TCATGAACTAACATGAGAGC+AGG | - | chr7.1:10616652-10616671 | None:intergenic | 40.0% | |
| TTCAGCTTCATCATCATCCA+AGG | - | chr7.1:10617376-10617395 | None:intergenic | 40.0% | |
| TTGCTAATCTTCAGGGTAGT+CGG | + | chr7.1:10616153-10616172 | MS.gene018678:CDS | 40.0% | |
| TTTGTGCGAGTTTGATGGAA+TGG | + | chr7.1:10616852-10616871 | MS.gene018678:intron | 40.0% | |
| ! | ACATTATCAAGAGAAGCGTG+TGG | + | chr7.1:10618050-10618069 | MS.gene018678:intron | 40.0% |
| ! | AGTAGTTTCAGGTCTTCAGA+AGG | - | chr7.1:10618095-10618114 | None:intergenic | 40.0% |
| ! | GGCTTTGTCACTTAGTTACA+AGG | + | chr7.1:10618145-10618164 | MS.gene018678:intron | 40.0% |
| !! | ATAACTTTGGCTTGCTTTGC+TGG | - | chr7.1:10617189-10617208 | None:intergenic | 40.0% |
| !! | CAAGCTGAGAAGTTGTTTCT+AGG | + | chr7.1:10616569-10616588 | MS.gene018678:intron | 40.0% |
| !! | TTGTTGACTTGTGTTTGGGA+TGG | + | chr7.1:10616259-10616278 | MS.gene018678:intron | 40.0% |
| AACTGCTAAGACAGGAAACG+AGG | + | chr7.1:10615925-10615944 | MS.gene018678:CDS | 45.0% | |
| ACACCAGGTTTCCAAGAAAG+GGG | + | chr7.1:10616510-10616529 | MS.gene018678:intron | 45.0% | |
| AGTTACATGGGTCATGCCAT+TGG | + | chr7.1:10617937-10617956 | MS.gene018678:intron | 45.0% | |
| CAAGATCATGGATAGCCCAA+TGG | - | chr7.1:10617956-10617975 | None:intergenic | 45.0% | |
| CCCTCAAGGATTGTAACACA+AGG | - | chr7.1:10617560-10617579 | None:intergenic | 45.0% | |
| CTGGGGAGGGTAAATCTATA+TGG | + | chr7.1:10616535-10616554 | MS.gene018678:intron | 45.0% | |
| GAAATGACTAACGCCACTAG+AGG | + | chr7.1:10615657-10615676 | MS.gene018678:CDS | 45.0% | |
| GCAAGTTTGTGCGAGTTTGA+TGG | + | chr7.1:10616847-10616866 | MS.gene018678:intron | 45.0% | |
| GCACATTCTTCTGTTGCTGT+TGG | + | chr7.1:10616343-10616362 | MS.gene018678:CDS | 45.0% | |
| GTACACCAGGTTTCCAAGAA+AGG | + | chr7.1:10616508-10616527 | MS.gene018678:intron | 45.0% | |
| GTTACATGGGTCATGCCATT+GGG | + | chr7.1:10617938-10617957 | MS.gene018678:intron | 45.0% | |
| TACTAGCTCGTCAGCTGATA+AGG | + | chr7.1:10616117-10616136 | MS.gene018678:CDS | 45.0% | |
| TGCTAATCTTCAGGGTAGTC+GGG | + | chr7.1:10616154-10616173 | MS.gene018678:CDS | 45.0% | |
| TTGGGCTATCCATGATCTTG+TGG | + | chr7.1:10617956-10617975 | MS.gene018678:intron | 45.0% | |
| TTTGCTGCGATTCTCCCTTT+GGG | - | chr7.1:10618442-10618461 | None:intergenic | 45.0% | |
| ! | CTAAGCATTGCTAACCCTCA+AGG | - | chr7.1:10617574-10617593 | None:intergenic | 45.0% |
| ! | GGATGATGATGAAGCTGAAG+AGG | + | chr7.1:10617377-10617396 | MS.gene018678:CDS | 45.0% |
| ! | TCTGTTGCTGTTGGCATGAA+AGG | + | chr7.1:10616352-10616371 | MS.gene018678:CDS | 45.0% |
| !! | TGATGACCTTGAGAAGCGTT+TGG | + | chr7.1:10618707-10618726 | MS.gene018678:CDS | 45.0% |
| !! | GTTAAATTAAATATATTAAA+AGG | - | chr7.1:10615822-10615841 | None:intergenic | 5.0% |
| AAAGGGTGGTCTAGTACACC+AGG | + | chr7.1:10616495-10616514 | MS.gene018678:intron | 50.0% | |
| ACACACACACACACACGGAA+AGG | + | chr7.1:10616989-10617008 | MS.gene018678:intron | 50.0% | |
| ACTAACATGAGAGCAGGCCT+TGG | - | chr7.1:10616646-10616665 | None:intergenic | 50.0% | |
| AGAAGAAGAACCTTTGGCGG+TGG | - | chr7.1:10615540-10615559 | None:intergenic | 50.0% | |
| AGTTATCGTCAGCCCCCAAA+GGG | + | chr7.1:10618425-10618444 | MS.gene018678:intron | 50.0% | |
| CACACACACACACACGGAAA+GGG | + | chr7.1:10616990-10617009 | MS.gene018678:intron | 50.0% | |
| CACCAGGTTTCCAAGAAAGG+GGG | + | chr7.1:10616511-10616530 | MS.gene018678:intron | 50.0% | |
| CCAGAAACAATCGGCACAGA+TGG | + | chr7.1:10617218-10617237 | MS.gene018678:CDS | 50.0% | |
| CTCGTCAGCTGATAAGGCTT+AGG | + | chr7.1:10616123-10616142 | MS.gene018678:CDS | 50.0% | |
| CTTTGCTGCGATTCTCCCTT+TGG | - | chr7.1:10618443-10618462 | None:intergenic | 50.0% | |
| GAAGAAGAACCTTTGGCGGT+GGG | - | chr7.1:10615539-10615558 | None:intergenic | 50.0% | |
| GTCGATATTGCCTCACAGGT+AGG | + | chr7.1:10618316-10618335 | MS.gene018678:intron | 50.0% | |
| GTTTCCAAGAAAGGGGGTCT+GGG | + | chr7.1:10616517-10616536 | MS.gene018678:intron | 50.0% | |
| TGCACACACACACACACACA+CGG | + | chr7.1:10616984-10617003 | MS.gene018678:intron | 50.0% | |
| TGTGACATCCAGGTCACACA+AGG | + | chr7.1:10616601-10616620 | MS.gene018678:intron | 50.0% | |
| TGTGTGTGCATGTGACAGGA+GGG | - | chr7.1:10616974-10616993 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGCATGTGAC+AGG | - | chr7.1:10616978-10616997 | None:intergenic | 50.0% | |
| TTGCTGCGATTCTCCCTTTG+GGG | - | chr7.1:10618441-10618460 | None:intergenic | 50.0% | |
| TTTCCAAGAAAGGGGGTCTG+GGG | + | chr7.1:10616518-10616537 | MS.gene018678:intron | 50.0% | |
| ! | GGTTGCTTGTCATTTCGTGC+AGG | + | chr7.1:10616312-10616331 | MS.gene018678:intron | 50.0% |
| !! | CCATCTGTGCCGATTGTTTC+TGG | - | chr7.1:10617221-10617240 | None:intergenic | 50.0% |
| !! | TGACCTTGAGAAGCGTTTGG+CGG | + | chr7.1:10618710-10618729 | MS.gene018678:CDS | 50.0% |
| !! | TGGCATGAAAGGCGCTACTA+AGG | + | chr7.1:10616363-10616382 | MS.gene018678:CDS | 50.0% |
| AACTTCGGCAGTAGCACCCT+TGG | + | chr7.1:10617619-10617638 | MS.gene018678:intron | 55.0% | |
| ACCAAGAAACCCACCGCCAA+AGG | + | chr7.1:10615527-10615546 | MS.gene018678:CDS | 55.0% | |
| ACTTCGGCAGTAGCACCCTT+GGG | + | chr7.1:10617620-10617639 | MS.gene018678:intron | 55.0% | |
| AGGCATAGCAACTCACACGC+AGG | + | chr7.1:10616187-10616206 | MS.gene018678:CDS | 55.0% | |
| CAGTTATCGTCAGCCCCCAA+AGG | + | chr7.1:10618424-10618443 | MS.gene018678:intron | 55.0% | |
| GACCCCCTTTCTTGGAAACC+TGG | - | chr7.1:10616516-10616535 | None:intergenic | 55.0% | |
| GCAACCTTGCGATTGTGCCA+AGG | + | chr7.1:10616626-10616645 | MS.gene018678:intron | 55.0% | |
| GGTTTCCAAGAAAGGGGGTC+TGG | + | chr7.1:10616516-10616535 | MS.gene018678:intron | 55.0% | |
| GTGTGTGTGCATGTGACAGG+AGG | - | chr7.1:10616975-10616994 | None:intergenic | 55.0% | |
| TGCTGCGATTCTCCCTTTGG+GGG | - | chr7.1:10618440-10618459 | None:intergenic | 55.0% | |
| ! | ACCTTTGGCGGTGGGTTTCT+TGG | - | chr7.1:10615531-10615550 | None:intergenic | 55.0% |
| !! | AGGGTGCTACTGCCGAAGTT+AGG | - | chr7.1:10617619-10617638 | None:intergenic | 55.0% |
| !! | CGGTGTCGATATTGCCTCAC+AGG | + | chr7.1:10618312-10618331 | MS.gene018678:CDS | 55.0% |
| CAAGAAAGGGGGTCTGGGGA+GGG | + | chr7.1:10616522-10616541 | MS.gene018678:intron | 60.0% | |
| CAGGCCTTGGCACAATCGCA+AGG | - | chr7.1:10616633-10616652 | None:intergenic | 60.0% | |
| CTCTCACGAAGAGCCTCTGC+AGG | - | chr7.1:10615630-10615649 | None:intergenic | 60.0% | |
| CTTCGGCAGTAGCACCCTTG+GGG | + | chr7.1:10617621-10617640 | MS.gene018678:intron | 60.0% | |
| GAGCCGCCAAACGCTTCTCA+AGG | - | chr7.1:10618716-10618735 | None:intergenic | 60.0% | |
| GGTAGTCGGGCTCAGATGAG+AGG | + | chr7.1:10616167-10616186 | MS.gene018678:CDS | 60.0% | |
| GGTTGCTGCCTTGTGTGACC+TGG | - | chr7.1:10616612-10616631 | None:intergenic | 60.0% | |
| CCAAGAAAGGGGGTCTGGGG+AGG | + | chr7.1:10616521-10616540 | MS.gene018678:intron | 65.0% | |
| CCTCCCCAGACCCCCTTTCT+TGG | - | chr7.1:10616524-10616543 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 10615515 | 10618749 | 10615515 | ID=MS.gene018678 |
| chr7.1 | mRNA | 10615515 | 10618749 | 10615515 | ID=MS.gene018678.t1;Parent=MS.gene018678 |
| chr7.1 | exon | 10615515 | 10615548 | 10615515 | ID=MS.gene018678.t1.exon1;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10615515 | 10615548 | 10615515 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10615634 | 10615678 | 10615634 | ID=MS.gene018678.t1.exon2;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10615634 | 10615678 | 10615634 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10615763 | 10615797 | 10615763 | ID=MS.gene018678.t1.exon3;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10615763 | 10615797 | 10615763 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10615896 | 10615946 | 10615896 | ID=MS.gene018678.t1.exon4;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10615896 | 10615946 | 10615896 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10616104 | 10616208 | 10616104 | ID=MS.gene018678.t1.exon5;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10616104 | 10616208 | 10616104 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10616334 | 10616405 | 10616334 | ID=MS.gene018678.t1.exon6;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10616334 | 10616405 | 10616334 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10617177 | 10617248 | 10617177 | ID=MS.gene018678.t1.exon7;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10617177 | 10617248 | 10617177 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10617342 | 10617422 | 10617342 | ID=MS.gene018678.t1.exon8;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10617342 | 10617422 | 10617342 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10618298 | 10618333 | 10618298 | ID=MS.gene018678.t1.exon9;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10618298 | 10618333 | 10618298 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10618427 | 10618482 | 10618427 | ID=MS.gene018678.t1.exon10;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10618427 | 10618482 | 10618427 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| chr7.1 | exon | 10618698 | 10618749 | 10618698 | ID=MS.gene018678.t1.exon11;Parent=MS.gene018678.t1 |
| chr7.1 | CDS | 10618698 | 10618749 | 10618698 | ID=cds.MS.gene018678.t1;Parent=MS.gene018678.t1 |
| Gene Sequence |
| Protein sequence |
