Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09111.t1 | XP_013455932.1 | 99.6 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.70E-31 | 146.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09111.t1 | Q9FFB3 | 75.5 | 229 | 54 | 1 | 1 | 227 | 1 | 229 | 2.1e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09111.t1 | I3S694 | 99.6 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.2e-31 | 146.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene09111 | 0.826828 | 2.19E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene09111 | 0.804113 | 2.53E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene09111 | 0.978806 | 1.33E-146 | -1.69E-46 |
| MS.gene050654 | MS.gene09111 | 0.81686 | 4.45E-52 | -1.69E-46 |
| MS.gene051490 | MS.gene09111 | 0.827237 | 1.75E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene09111 | 0.823899 | 1.08E-53 | -1.69E-46 |
| MS.gene054943 | MS.gene09111 | 0.811254 | 7.68E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene09111 | 0.820082 | 8.28E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene09111 | 0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene09111 | 0.83702 | 6.65E-57 | -1.69E-46 |
| MS.gene056181 | MS.gene09111 | 0.830418 | 2.97E-55 | -1.69E-46 |
| MS.gene056638 | MS.gene09111 | 0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene09111 | 0.807755 | 4.33E-50 | -1.69E-46 |
| MS.gene056901 | MS.gene09111 | 0.811045 | 8.52E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene09111 | 0.818026 | 2.43E-52 | -1.69E-46 |
| MS.gene058681 | MS.gene09111 | 0.801529 | 8.63E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene09111 | 0.81783 | 2.69E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene09111 | 0.802891 | 4.52E-49 | -1.69E-46 |
| MS.gene060527 | MS.gene09111 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene09111 | 0.822128 | 2.80E-53 | -1.69E-46 |
| MS.gene060932 | MS.gene09111 | 0.806487 | 8.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23464 | MS.gene09111 | PPI |
| MS.gene033909 | MS.gene09111 | PPI |
| MS.gene98009 | MS.gene09111 | PPI |
| MS.gene96973 | MS.gene09111 | PPI |
| MS.gene75244 | MS.gene09111 | PPI |
| MS.gene09111 | MS.gene025196 | PPI |
| MS.gene09111 | MS.gene75911 | PPI |
| MS.gene018678 | MS.gene09111 | PPI |
| MS.gene020387 | MS.gene09111 | PPI |
| MS.gene051184 | MS.gene09111 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09111.t1 | MTR_4g057565 | 99.559 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.44e-162 | 448 |
| MS.gene09111.t1 | MTR_1g069715 | 31.892 | 185 | 126 | 0 | 1 | 185 | 462 | 646 | 1.09e-22 | 96.3 |
| MS.gene09111.t1 | MTR_2g047875 | 29.730 | 222 | 148 | 1 | 5 | 226 | 1 | 214 | 6.29e-21 | 87.4 |
| MS.gene09111.t1 | MTR_7g097170 | 32.018 | 228 | 133 | 4 | 5 | 227 | 1 | 211 | 1.74e-18 | 80.9 |
| MS.gene09111.t1 | MTR_2g041190 | 28.634 | 227 | 146 | 5 | 7 | 226 | 4 | 221 | 6.65e-15 | 71.2 |
| MS.gene09111.t1 | MTR_8g019700 | 27.684 | 177 | 126 | 2 | 7 | 182 | 4 | 179 | 1.81e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09111.t1 | AT5G22950 | 82.969 | 229 | 37 | 1 | 1 | 227 | 1 | 229 | 4.15e-126 | 356 |
| MS.gene09111.t1 | AT3G45000 | 72.362 | 199 | 53 | 1 | 31 | 227 | 2 | 200 | 1.00e-87 | 258 |
| MS.gene09111.t1 | AT3G45000 | 76.259 | 139 | 31 | 1 | 91 | 227 | 1 | 139 | 6.33e-59 | 182 |
| MS.gene09111.t1 | AT1G03950 | 31.532 | 222 | 140 | 3 | 5 | 226 | 1 | 210 | 1.02e-28 | 107 |
| MS.gene09111.t1 | AT5G44560 | 29.834 | 181 | 127 | 0 | 5 | 185 | 1 | 181 | 9.15e-21 | 87.0 |
| MS.gene09111.t1 | AT5G44560 | 29.213 | 178 | 126 | 0 | 5 | 182 | 1 | 178 | 6.07e-20 | 84.3 |
| MS.gene09111.t1 | AT2G06530 | 29.362 | 235 | 142 | 7 | 4 | 226 | 1 | 223 | 6.77e-17 | 77.0 |
| MS.gene09111.t1 | AT5G44560 | 28.662 | 157 | 112 | 0 | 29 | 185 | 5 | 161 | 1.16e-14 | 70.5 |
| MS.gene09111.t1 | AT2G06530 | 28.638 | 213 | 129 | 6 | 25 | 226 | 2 | 202 | 9.00e-13 | 65.5 |
| MS.gene09111.t1 | AT5G44560 | 30.534 | 131 | 91 | 0 | 5 | 135 | 1 | 131 | 1.02e-12 | 64.3 |
Find 42 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATAACTGTTGCGGATT+TGG | 0.162141 | 4.1:+40714515 | None:intergenic |
| AAGAAGAAATGGAAGAAATT+AGG | 0.185877 | 4.1:-40710057 | MS.gene09111:CDS |
| TGCATAGCAACAGCCATTTC+AGG | 0.256684 | 4.1:+40710505 | None:intergenic |
| AACTGTTGCGGATTTGGTTT+CGG | 0.312520 | 4.1:+40714521 | None:intergenic |
| TAACCGTCTGCATGAAAATA+AGG | 0.340473 | 4.1:-40713127 | MS.gene09111:CDS |
| CGCAACAGTTATTGAGAGAT+TGG | 0.341374 | 4.1:-40714508 | MS.gene09111:CDS |
| TGACCTGACTTTAGCGAGTC+TGG | 0.371271 | 4.1:+40710033 | None:intergenic |
| AGAAGAAATGGAAGAAATTA+GGG | 0.376649 | 4.1:-40710056 | MS.gene09111:CDS |
| CTACAGAACTTGTGAGATCT+AGG | 0.401420 | 4.1:-40713158 | MS.gene09111:CDS |
| CCTCATGAAGGCTCCTGAAA+TGG | 0.421101 | 4.1:-40710518 | MS.gene09111:CDS |
| TCCTCTGCGGCACTTTGAGC+AGG | 0.453503 | 4.1:+40710197 | None:intergenic |
| TTCAGCAATTGCTCGTACTG+TGG | 0.454062 | 4.1:-40710584 | MS.gene09111:intron |
| TGATTTAGATATTCAGAGAG+AGG | 0.474813 | 4.1:-40714343 | MS.gene09111:intron |
| TGTTGATGATGAAGAAGAAA+TGG | 0.478357 | 4.1:-40710068 | MS.gene09111:CDS |
| TTCTTCATCATCAACACCCT+CGG | 0.485224 | 4.1:+40710075 | None:intergenic |
| GTTTCAGGCAGGAGTAATTG+AGG | 0.506660 | 4.1:-40710369 | MS.gene09111:intron |
| GGGCCAGACTCGCTAAAGTC+AGG | 0.512607 | 4.1:-40710036 | MS.gene09111:CDS |
| CTATTAAAGAAGCTGCTAAG+AGG | 0.518339 | 4.1:-40714302 | MS.gene09111:CDS |
| TCAGCAATTGCTCGTACTGT+GGG | 0.530452 | 4.1:-40710583 | MS.gene09111:intron |
| AACATTGAACGACAAATTCG+CGG | 0.539995 | 4.1:-40714458 | MS.gene09111:intron |
| TGAAGCTGTGAGGAAACAAA+AGG | 0.551851 | 4.1:-40710228 | MS.gene09111:CDS |
| CAATCTCTCAATAACTGTTG+CGG | 0.557549 | 4.1:+40714509 | None:intergenic |
| TGCTCAAAGTGCCGCAGAGG+AGG | 0.582103 | 4.1:-40710195 | MS.gene09111:intron |
| AAAGTCTTAACTGAATTAGC+CGG | 0.583548 | 4.1:-40710272 | MS.gene09111:CDS |
| AACTCAATATCAATGCACCT+TGG | 0.594406 | 4.1:-40713096 | MS.gene09111:CDS |
| ACCTGCTCAAAGTGCCGCAG+AGG | 0.595296 | 4.1:-40710198 | MS.gene09111:CDS |
| TGACTCAGCATTAGATTCTG+AGG | 0.600712 | 4.1:-40710327 | MS.gene09111:CDS |
| CAGGAAGATGCTATAGCCGA+GGG | 0.609938 | 4.1:-40710091 | MS.gene09111:CDS |
| AAGTTGTGCGGCTGTCTCAC+CGG | 0.610913 | 4.1:+40710253 | None:intergenic |
| GCTTGTCAATAACCTCATGA+AGG | 0.612171 | 4.1:-40710530 | MS.gene09111:CDS |
| ACCTACCAACACTTTCTCCA+AGG | 0.615558 | 4.1:+40713079 | None:intergenic |
| CCATTTCAGGAGCCTTCATG+AGG | 0.615981 | 4.1:+40710518 | None:intergenic |
| GAATGACATTGGTTCTGCAA+AGG | 0.618815 | 4.1:-40714280 | MS.gene09111:intron |
| GCAGGAAGATGCTATAGCCG+AGG | 0.620355 | 4.1:-40710092 | MS.gene09111:intron |
| ATGCACCTTGGAGAAAGTGT+TGG | 0.628455 | 4.1:-40713084 | MS.gene09111:intron |
| ATTGACAAGCTTCATAACCT+CGG | 0.641959 | 4.1:+40710543 | None:intergenic |
| CACAACTTCCTGAAGCTGTG+AGG | 0.670413 | 4.1:-40710238 | MS.gene09111:CDS |
| GCTGCTAAGAGGAATGACAT+TGG | 0.677222 | 4.1:-40714291 | MS.gene09111:CDS |
| CACAGCTTCAGGAAGTTGTG+CGG | 0.680019 | 4.1:+40710241 | None:intergenic |
| ACATCTATCAAAGAGTGCCG+AGG | 0.689000 | 4.1:-40710560 | MS.gene09111:CDS |
| GTTCAGCAAAGAAATGACCA+AGG | 0.706921 | 4.1:-40710479 | MS.gene09111:intron |
| AACTGCACGTACCTCCTCTG+CGG | 0.719337 | 4.1:+40710184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTTTATTTT+GGG | - | chr4.1:40710899-40710918 | MS.gene09111:intron | 0.0% |
| !!! | TTTTTTATTTTTTTTTATTT+TGG | - | chr4.1:40710898-40710917 | MS.gene09111:intron | 0.0% |
| !!! | ATATTTTTTAATCTTTACAA+TGG | - | chr4.1:40712932-40712951 | MS.gene09111:intron | 10.0% |
| !! | AAAAAAAACCTAAGTTAAAT+AGG | - | chr4.1:40711888-40711907 | MS.gene09111:intron | 15.0% |
| !! | CAAAAAACTATAGATAAAAT+CGG | + | chr4.1:40712189-40712208 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAAATTACTAC+AGG | + | chr4.1:40710384-40710403 | None:intergenic | 15.0% |
| !!! | TTTTTAATTAAGAGTATGTT+TGG | + | chr4.1:40711755-40711774 | None:intergenic | 15.0% |
| !! | AAAATCTAATCTCCTTATTA+TGG | - | chr4.1:40711372-40711391 | MS.gene09111:intron | 20.0% |
| !! | AAATTTAGTGATTAATGAGT+TGG | - | chr4.1:40710661-40710680 | MS.gene09111:intron | 20.0% |
| !! | AAGATAAAACTTCATGAAAT+TGG | - | chr4.1:40713400-40713419 | MS.gene09111:intron | 20.0% |
| !! | ATGGTTTATGATAAAACATA+GGG | - | chr4.1:40710692-40710711 | MS.gene09111:intron | 20.0% |
| !! | ATTGAACAAATACCATAATA+AGG | + | chr4.1:40711387-40711406 | None:intergenic | 20.0% |
| !! | CATAATATAGTCATTGTATA+AGG | + | chr4.1:40713780-40713799 | None:intergenic | 20.0% |
| !! | GTTAATTGCATGATAATTAT+TGG | - | chr4.1:40714175-40714194 | MS.gene09111:intron | 20.0% |
| !! | GTTTCTCTTAAAAAATTTCT+AGG | + | chr4.1:40710632-40710651 | None:intergenic | 20.0% |
| !! | TACATGTGTAAATATATTCT+TGG | - | chr4.1:40713808-40713827 | MS.gene09111:intron | 20.0% |
| !! | TATGGTTTATGATAAAACAT+AGG | - | chr4.1:40710691-40710710 | MS.gene09111:intron | 20.0% |
| !!! | AGTGTATATACAAGTTTTTA+TGG | - | chr4.1:40711086-40711105 | MS.gene09111:intron | 20.0% |
| !!! | CATAATTGTTTCATTTTAGA+TGG | - | chr4.1:40712855-40712874 | MS.gene09111:intron | 20.0% |
| !!! | GTTTTATCATAAACCATATT+TGG | + | chr4.1:40710689-40710708 | None:intergenic | 20.0% |
| !!! | TAAGAATAAAATTAGCTTAG+TGG | - | chr4.1:40710393-40710412 | MS.gene09111:intron | 20.0% |
| !!! | TATGGTGTTTTACAATTATA+AGG | - | chr4.1:40713037-40713056 | MS.gene09111:intron | 20.0% |
| !!! | TTTCTTTTGAGAAAATAAAG+CGG | - | chr4.1:40712891-40712910 | MS.gene09111:intron | 20.0% |
| !!! | TTTTTTAATCTTTACAATGG+CGG | - | chr4.1:40712935-40712954 | MS.gene09111:intron | 20.0% |
| ! | AAGAAGAAATGGAAGAAATT+AGG | - | chr4.1:40714521-40714540 | MS.gene09111:CDS | 25.0% |
| ! | AATGTTCGATAGAATAAAGT+AGG | - | chr4.1:40711332-40711351 | MS.gene09111:intron | 25.0% |
| ! | AGAAGAAATGGAAGAAATTA+GGG | - | chr4.1:40714522-40714541 | MS.gene09111:CDS | 25.0% |
| ! | AGAAGAATCAAGTATCAATT+AGG | + | chr4.1:40710175-40710194 | None:intergenic | 25.0% |
| ! | ATGGTATTTGTTCAATTTAC+AGG | - | chr4.1:40711391-40711410 | MS.gene09111:intron | 25.0% |
| ! | GAAGAATCAAGTATCAATTA+GGG | + | chr4.1:40710174-40710193 | None:intergenic | 25.0% |
| ! | TCTTATCTCAAGCATTTATT+TGG | - | chr4.1:40713754-40713773 | MS.gene09111:intron | 25.0% |
| ! | TGATTATATGTGGTTATGAT+TGG | - | chr4.1:40710194-40710213 | MS.gene09111:intron | 25.0% |
| ! | TTGATTCTTCTGATTATATG+TGG | - | chr4.1:40710184-40710203 | MS.gene09111:intron | 25.0% |
| !! | CAAGTTTACCTATTTAACTT+AGG | + | chr4.1:40711899-40711918 | None:intergenic | 25.0% |
| !! | TAAGTGTGATTTTCATACAA+AGG | + | chr4.1:40713372-40713391 | None:intergenic | 25.0% |
| !! | TAGATTTTGCAAAATCACAA+TGG | + | chr4.1:40711606-40711625 | None:intergenic | 25.0% |
| !! | TCATTGGAAATTCCTAATTT+TGG | - | chr4.1:40713964-40713983 | MS.gene09111:intron | 25.0% |
| !! | TGATGATCAAATGTTTGTTA+TGG | - | chr4.1:40711938-40711957 | MS.gene09111:intron | 25.0% |
| !! | TGATTTTCATACAAAGGATT+AGG | + | chr4.1:40713366-40713385 | None:intergenic | 25.0% |
| !! | TTGATAATAGAACTGTTCAT+TGG | - | chr4.1:40713948-40713967 | MS.gene09111:intron | 25.0% |
| !!! | ATGATCAAATGTTTGTTATG+GGG | - | chr4.1:40711940-40711959 | MS.gene09111:intron | 25.0% |
| !!! | CATTTTTAGGTTTTACTTTG+GGG | - | chr4.1:40713617-40713636 | MS.gene09111:intron | 25.0% |
| !!! | CTATAGTTTTTTGATGTTGA+GGG | - | chr4.1:40712196-40712215 | MS.gene09111:intron | 25.0% |
| !!! | GATGATCAAATGTTTGTTAT+GGG | - | chr4.1:40711939-40711958 | MS.gene09111:intron | 25.0% |
| !!! | GCATTTTTAGGTTTTACTTT+GGG | - | chr4.1:40713616-40713635 | MS.gene09111:intron | 25.0% |
| !!! | GTTTTAAGAGAGATCAAAAA+TGG | + | chr4.1:40710152-40710171 | None:intergenic | 25.0% |
| !!! | TACGAATTTATGTGTTTTTG+AGG | - | chr4.1:40711983-40712002 | MS.gene09111:intron | 25.0% |
| !!! | TCTATAGTTTTTTGATGTTG+AGG | - | chr4.1:40712195-40712214 | MS.gene09111:intron | 25.0% |
| !!! | TGCATTTTTAGGTTTTACTT+TGG | - | chr4.1:40713615-40713634 | MS.gene09111:intron | 25.0% |
| !!! | TTCATAACCAATGCTATTTT+TGG | - | chr4.1:40711262-40711281 | MS.gene09111:intron | 25.0% |
| AAAGTCTTAACTGAATTAGC+CGG | - | chr4.1:40714306-40714325 | MS.gene09111:CDS | 30.0% | |
| AAATTAAAACAGGAAGAGAG+GGG | - | chr4.1:40713680-40713699 | MS.gene09111:intron | 30.0% | |
| AATTAACTTCTATGACTACG+GGG | + | chr4.1:40714162-40714181 | None:intergenic | 30.0% | |
| ACTTATTCCACTTAGTTAAC+TGG | + | chr4.1:40711862-40711881 | None:intergenic | 30.0% | |
| AGCAACAATTATCATACAAC+TGG | + | chr4.1:40711806-40711825 | None:intergenic | 30.0% | |
| AGCCAAATAACAAACTTAAC+AGG | - | chr4.1:40713162-40713181 | MS.gene09111:CDS | 30.0% | |
| AGTAAGGAGTTTAGATTAGA+TGG | - | chr4.1:40710574-40710593 | MS.gene09111:CDS | 30.0% | |
| AGTTCAATTTCCTGTTAACA+AGG | - | chr4.1:40714413-40714432 | MS.gene09111:intron | 30.0% | |
| CAAATAACAAACTTAACAGG+AGG | - | chr4.1:40713165-40713184 | MS.gene09111:CDS | 30.0% | |
| CAAATTAAAACAGGAAGAGA+GGG | - | chr4.1:40713679-40713698 | MS.gene09111:intron | 30.0% | |
| CAATTAACTTCTATGACTAC+GGG | + | chr4.1:40714163-40714182 | None:intergenic | 30.0% | |
| CTGATATCAAGAAAGAGAAA+AGG | + | chr4.1:40713328-40713347 | None:intergenic | 30.0% | |
| GAATAAAATTCAGACTTGCA+AGG | + | chr4.1:40712593-40712612 | None:intergenic | 30.0% | |
| GCAATTAACTTCTATGACTA+CGG | + | chr4.1:40714164-40714183 | None:intergenic | 30.0% | |
| GTACAAACCAAAAATAGCAT+TGG | + | chr4.1:40711272-40711291 | None:intergenic | 30.0% | |
| TAGTCATCTTGAGATATTTG+AGG | - | chr4.1:40713915-40713934 | MS.gene09111:intron | 30.0% | |
| TATCTTAACATGCTATAGCT+AGG | - | chr4.1:40712292-40712311 | MS.gene09111:intron | 30.0% | |
| TGATTTAGATATTCAGAGAG+AGG | - | chr4.1:40710235-40710254 | MS.gene09111:CDS | 30.0% | |
| TGGAATGCATTATTATTTGC+AGG | - | chr4.1:40714468-40714487 | MS.gene09111:CDS | 30.0% | |
| ! | AAGTCTGAATTTTATTCACG+AGG | - | chr4.1:40712596-40712615 | MS.gene09111:intron | 30.0% |
| ! | ACTTATTCTCTTATTGACTG+TGG | + | chr4.1:40713119-40713138 | None:intergenic | 30.0% |
| ! | AGAAAAAGAGAAAGCTTGTT+AGG | - | chr4.1:40712544-40712563 | MS.gene09111:intron | 30.0% |
| ! | GACATGTAGATTTTGTAGTA+AGG | - | chr4.1:40710558-40710577 | MS.gene09111:CDS | 30.0% |
| ! | GGGGATAAAATTTTACTAAC+CGG | - | chr4.1:40713636-40713655 | MS.gene09111:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr4.1:40710673-40710692 | MS.gene09111:intron | 30.0% |
| ! | TCATTCTATGGTGTTAATCT+TGG | + | chr4.1:40712999-40713018 | None:intergenic | 30.0% |
| ! | TCTTGAGATATTTGAGGTAT+TGG | - | chr4.1:40713921-40713940 | MS.gene09111:intron | 30.0% |
| ! | TTCATGAAATTGGAAGTATG+TGG | - | chr4.1:40713410-40713429 | MS.gene09111:intron | 30.0% |
| !! | CTCCTGTTAAGTTTGTTATT+TGG | + | chr4.1:40713167-40713186 | None:intergenic | 30.0% |
| !! | TGTTGATGATGAAGAAGAAA+TGG | - | chr4.1:40714510-40714529 | MS.gene09111:CDS | 30.0% |
| !!! | ATGCTATTTTTGGTTTGTAC+TGG | - | chr4.1:40711272-40711291 | MS.gene09111:intron | 30.0% |
| !!! | TTATGTGTTTTTGAGGTTGA+GGG | - | chr4.1:40711990-40712009 | MS.gene09111:intron | 30.0% |
| !!! | TTTATGTGTTTTTGAGGTTG+AGG | - | chr4.1:40711989-40712008 | MS.gene09111:intron | 30.0% |
| AAAAGAGAAGACTGCCTAAA+AGG | + | chr4.1:40711305-40711324 | None:intergenic | 35.0% | |
| AAAAGAGGTAGAGCAAAAAG+AGG | - | chr4.1:40712335-40712354 | MS.gene09111:intron | 35.0% | |
| AACATTGAACGACAAATTCG+CGG | - | chr4.1:40710120-40710139 | MS.gene09111:intron | 35.0% | |
| AACCTAAAAATGCACCACAA+AGG | + | chr4.1:40713609-40713628 | None:intergenic | 35.0% | |
| AACTCAATATCAATGCACCT+TGG | - | chr4.1:40711482-40711501 | MS.gene09111:intron | 35.0% | |
| AAGAGAATAAGTCAGCAAAG+CGG | - | chr4.1:40713127-40713146 | MS.gene09111:CDS | 35.0% | |
| AAGGAGTTTAGATTAGATGG+AGG | - | chr4.1:40710577-40710596 | MS.gene09111:CDS | 35.0% | |
| AATCTACACTTTGTGCATGT+TGG | - | chr4.1:40711620-40711639 | MS.gene09111:intron | 35.0% | |
| AATGTATGGAAGAGTTAGAG+AGG | - | chr4.1:40713216-40713235 | MS.gene09111:intron | 35.0% | |
| ACCATAGAATGACATTGACA+AGG | - | chr4.1:40713007-40713026 | MS.gene09111:intron | 35.0% | |
| ACCTATAGTAGAAAAGATCG+TGG | - | chr4.1:40710499-40710518 | MS.gene09111:CDS | 35.0% | |
| ATCAAGCACAAAAGCTAACT+TGG | + | chr4.1:40711782-40711801 | None:intergenic | 35.0% | |
| ATTCCACTTAGTTAACTGGA+GGG | + | chr4.1:40711858-40711877 | None:intergenic | 35.0% | |
| ATTGACAAGCTTCATAACCT+CGG | + | chr4.1:40714038-40714057 | None:intergenic | 35.0% | |
| CAACATAAATGTTCCACTCT+TGG | - | chr4.1:40712249-40712268 | MS.gene09111:intron | 35.0% | |
| CAATCTCTCAATAACTGTTG+CGG | + | chr4.1:40710072-40710091 | None:intergenic | 35.0% | |
| CATAACTGAACTTGACTAGT+AGG | - | chr4.1:40713072-40713091 | MS.gene09111:intron | 35.0% | |
| CCAAATTAAAACAGGAAGAG+AGG | - | chr4.1:40713678-40713697 | MS.gene09111:intron | 35.0% | |
| CCATAGAATGACATTGACAA+GGG | - | chr4.1:40713008-40713027 | MS.gene09111:intron | 35.0% | |
| CTAAAAGAGACCAAACTAGA+GGG | - | chr4.1:40712146-40712165 | MS.gene09111:intron | 35.0% | |
| CTAGAAATTGTTTAGTCTGC+AGG | - | chr4.1:40712832-40712851 | MS.gene09111:intron | 35.0% | |
| CTATCCCACTTAATGTGATA+AGG | - | chr4.1:40710734-40710753 | MS.gene09111:intron | 35.0% | |
| CTATTAAAGAAGCTGCTAAG+AGG | - | chr4.1:40710276-40710295 | MS.gene09111:CDS | 35.0% | |
| CTCAAGATGACTAATTGCAA+AGG | + | chr4.1:40713908-40713927 | None:intergenic | 35.0% | |
| CTCTCAAGTCACACTAATTA+TGG | - | chr4.1:40714448-40714467 | MS.gene09111:intron | 35.0% | |
| CTTATCACATTAAGTGGGAT+AGG | + | chr4.1:40710736-40710755 | None:intergenic | 35.0% | |
| CTTGTTAGGAAAGATTCCAA+AGG | - | chr4.1:40712558-40712577 | MS.gene09111:intron | 35.0% | |
| GAAAGACAGTACATTGAATG+AGG | + | chr4.1:40711038-40711057 | None:intergenic | 35.0% | |
| GTAGGTAAGAAACCTTTGAT+AGG | - | chr4.1:40713090-40713109 | MS.gene09111:CDS | 35.0% | |
| GTTTCAAAAGGCTAGAAGTT+TGG | + | chr4.1:40710992-40711011 | None:intergenic | 35.0% | |
| TAACAGGAGGTAATAGTTGT+GGG | - | chr4.1:40713178-40713197 | MS.gene09111:intron | 35.0% | |
| TAACCGTCTGCATGAAAATA+AGG | - | chr4.1:40711451-40711470 | MS.gene09111:intron | 35.0% | |
| TATAGCTAGGAACAGGAAAA+GGG | - | chr4.1:40712305-40712324 | MS.gene09111:intron | 35.0% | |
| TATTCCACTTAGTTAACTGG+AGG | + | chr4.1:40711859-40711878 | None:intergenic | 35.0% | |
| TGCACGAAGAGGATAAATTA+AGG | + | chr4.1:40711544-40711563 | None:intergenic | 35.0% | |
| TGTGCACTTAACATGATCAA+TGG | - | chr4.1:40712375-40712394 | MS.gene09111:intron | 35.0% | |
| TTAACAGGAGGTAATAGTTG+TGG | - | chr4.1:40713177-40713196 | MS.gene09111:intron | 35.0% | |
| TTCGTGCATGTTTGATATCA+TGG | - | chr4.1:40711556-40711575 | MS.gene09111:intron | 35.0% | |
| TTGGTACTGTATTCTGTTTC+AGG | - | chr4.1:40714194-40714213 | MS.gene09111:intron | 35.0% | |
| TTTAATTGACACCTCCTTTG+TGG | - | chr4.1:40713592-40713611 | MS.gene09111:intron | 35.0% | |
| ! | CAAGCCTTATCACATTAAGT+GGG | + | chr4.1:40710741-40710760 | None:intergenic | 35.0% |
| ! | GCAGACTAAACAATTTCTAG+AGG | + | chr4.1:40712832-40712851 | None:intergenic | 35.0% |
| ! | TACCCAATTGAAGGCATATT+CGG | - | chr4.1:40711143-40711162 | MS.gene09111:intron | 35.0% |
| ! | TCCACGATCTTTTCTACTAT+AGG | + | chr4.1:40710503-40710522 | None:intergenic | 35.0% |
| ! | TTTCTCTTTTTCTTACGCCT+TGG | + | chr4.1:40712537-40712556 | None:intergenic | 35.0% |
| !! | ATTTTATTCACGAGGCATTC+TGG | - | chr4.1:40712604-40712623 | MS.gene09111:intron | 35.0% |
| !! | GTAAAAAGAGCCTTGTTAAC+AGG | + | chr4.1:40714426-40714445 | None:intergenic | 35.0% |
| !! | GTGCTTATGCATGTTTTTGA+GGG | - | chr4.1:40712680-40712699 | MS.gene09111:intron | 35.0% |
| !! | TTTTATTCACGAGGCATTCT+GGG | - | chr4.1:40712605-40712624 | MS.gene09111:intron | 35.0% |
| !!! | CCTCTCTTCCTGTTTTAATT+TGG | + | chr4.1:40713681-40713700 | None:intergenic | 35.0% |
| !!! | GGGGATAGTTTTATATAACC+AGG | - | chr4.1:40712462-40712481 | MS.gene09111:intron | 35.0% |
| !!! | TTCTAGCCTTTTGAAACAAC+AGG | - | chr4.1:40710995-40711014 | MS.gene09111:intron | 35.0% |
| AACATGCTATAGCTAGGAAC+AGG | - | chr4.1:40712298-40712317 | MS.gene09111:intron | 40.0% | |
| AACTGACTGTGATGTCTGTT+TGG | - | chr4.1:40712222-40712241 | MS.gene09111:intron | 40.0% | |
| ACACCGAATATGCCTTCAAT+TGG | + | chr4.1:40711149-40711168 | None:intergenic | 40.0% | |
| AGATCGTGGAAGTTATGCTT+AGG | - | chr4.1:40710513-40710532 | MS.gene09111:CDS | 40.0% | |
| AGGCATTCATTCCTTAGTCA+TGG | - | chr4.1:40712482-40712501 | MS.gene09111:intron | 40.0% | |
| AGTACGAGCAATTGCTGAAA+AGG | + | chr4.1:40713993-40714012 | None:intergenic | 40.0% | |
| AGTATGTTTGGTATCGCAGT+GGG | + | chr4.1:40711743-40711762 | None:intergenic | 40.0% | |
| AGTGAGGGCCAAATTAAAAC+AGG | - | chr4.1:40713670-40713689 | MS.gene09111:intron | 40.0% | |
| ATGACTAAGGAATGAATGCC+TGG | + | chr4.1:40712483-40712502 | None:intergenic | 40.0% | |
| ATGTGGTCATGTAGAGACTA+GGG | - | chr4.1:40713250-40713269 | MS.gene09111:intron | 40.0% | |
| CACCGAATATGCCTTCAATT+GGG | + | chr4.1:40711148-40711167 | None:intergenic | 40.0% | |
| CCACTTAATGTGATAAGGCT+TGG | - | chr4.1:40710739-40710758 | MS.gene09111:intron | 40.0% | |
| CCCTTGTCAATGTCATTCTA+TGG | + | chr4.1:40713011-40713030 | None:intergenic | 40.0% | |
| CGCAACAGTTATTGAGAGAT+TGG | - | chr4.1:40710070-40710089 | MS.gene09111:CDS | 40.0% | |
| CGCATGTTTGGTATCACAAT+GGG | + | chr4.1:40711677-40711696 | None:intergenic | 40.0% | |
| CGTTGGATGTGTTGTAATAC+TGG | - | chr4.1:40710430-40710449 | MS.gene09111:intron | 40.0% | |
| CTAAAAATGCACCACAAAGG+AGG | + | chr4.1:40713606-40713625 | None:intergenic | 40.0% | |
| CTACAGAACTTGTGAGATCT+AGG | - | chr4.1:40711420-40711439 | MS.gene09111:intron | 40.0% | |
| CTATAGCTAGGAACAGGAAA+AGG | - | chr4.1:40712304-40712323 | MS.gene09111:intron | 40.0% | |
| CTCAATAACTGTTGCGGATT+TGG | + | chr4.1:40710066-40710085 | None:intergenic | 40.0% | |
| CTGAAAAGGCAGCCAAAATT+AGG | + | chr4.1:40713979-40713998 | None:intergenic | 40.0% | |
| CTGTCTTTCTGCTGAATGTA+AGG | - | chr4.1:40711049-40711068 | MS.gene09111:intron | 40.0% | |
| GAAAAGGGTCTTAGCAAAAG+AGG | - | chr4.1:40712320-40712339 | MS.gene09111:intron | 40.0% | |
| GAATATGCCTTCAATTGGGT+AGG | + | chr4.1:40711144-40711163 | None:intergenic | 40.0% | |
| GATATCAAACATGCACGAAG+AGG | + | chr4.1:40711555-40711574 | None:intergenic | 40.0% | |
| GCAGGAGAAATGAAGTATGA+AGG | + | chr4.1:40714129-40714148 | None:intergenic | 40.0% | |
| GCTAAAAGAGACCAAACTAG+AGG | - | chr4.1:40712145-40712164 | MS.gene09111:intron | 40.0% | |
| GCTTGTCAATAACCTCATGA+AGG | - | chr4.1:40714048-40714067 | MS.gene09111:intron | 40.0% | |
| GGAAGAGTTAGAGAGGAAAT+TGG | - | chr4.1:40713223-40713242 | MS.gene09111:intron | 40.0% | |
| GGATCTCGAAATAACTAGCA+AGG | - | chr4.1:40713271-40713290 | MS.gene09111:intron | 40.0% | |
| GGCATTCATTCCTTAGTCAT+GGG | - | chr4.1:40712483-40712502 | MS.gene09111:intron | 40.0% | |
| GTGATCGGTCTTAACATGTA+TGG | + | chr4.1:40711118-40711137 | None:intergenic | 40.0% | |
| GTGCATGTTTGATATCATGG+TGG | - | chr4.1:40711559-40711578 | MS.gene09111:intron | 40.0% | |
| GTTCAGCAAAGAAATGACCA+AGG | - | chr4.1:40714099-40714118 | MS.gene09111:intron | 40.0% | |
| TACTGTATTCTGTTTCAGGC+AGG | - | chr4.1:40714198-40714217 | MS.gene09111:intron | 40.0% | |
| TATACCTAGGGACAGGAAAA+GGG | - | chr4.1:40712103-40712122 | MS.gene09111:intron | 40.0% | |
| TATGTGGTCATGTAGAGACT+AGG | - | chr4.1:40713249-40713268 | MS.gene09111:intron | 40.0% | |
| TCAGGCGTATATATCAGTGT+TGG | - | chr4.1:40712658-40712677 | MS.gene09111:intron | 40.0% | |
| TCTTTCTGCTGAATGTAAGG+TGG | - | chr4.1:40711052-40711071 | MS.gene09111:intron | 40.0% | |
| TGAAGCTGTGAGGAAACAAA+AGG | - | chr4.1:40714350-40714369 | MS.gene09111:intron | 40.0% | |
| TGACTCAGCATTAGATTCTG+AGG | - | chr4.1:40714251-40714270 | MS.gene09111:intron | 40.0% | |
| TGCTGAATGTAAGGTGGAAT+AGG | - | chr4.1:40711058-40711077 | MS.gene09111:intron | 40.0% | |
| TGTCAAAAGTTGCGCATGTT+TGG | + | chr4.1:40711689-40711708 | None:intergenic | 40.0% | |
| TGTGCATGTTGGTATCATAG+CGG | - | chr4.1:40711631-40711650 | MS.gene09111:intron | 40.0% | |
| TTCTTCATCATCAACACCCT+CGG | + | chr4.1:40714506-40714525 | None:intergenic | 40.0% | |
| ! | AACTGTTGCGGATTTGGTTT+CGG | + | chr4.1:40710060-40710079 | None:intergenic | 40.0% |
| ! | AATAGCTTGTACGGAGCTTA+TGG | - | chr4.1:40712760-40712779 | MS.gene09111:intron | 40.0% |
| ! | AATCACATGTGTCGATGTGT+CGG | - | chr4.1:40710772-40710791 | MS.gene09111:intron | 40.0% |
| ! | AGCATCTGCTTCTAAAGACT+GGG | - | chr4.1:40712508-40712527 | MS.gene09111:intron | 40.0% |
| ! | CAACTTTTGACAAATCACGG+TGG | - | chr4.1:40711697-40711716 | MS.gene09111:intron | 40.0% |
| ! | CCAAGCCTTATCACATTAAG+TGG | + | chr4.1:40710742-40710761 | None:intergenic | 40.0% |
| ! | CTCCTTTGTGGTGCATTTTT+AGG | - | chr4.1:40713604-40713623 | MS.gene09111:intron | 40.0% |
| ! | GAGAGGAAATTGGAAGTATG+TGG | - | chr4.1:40713233-40713252 | MS.gene09111:intron | 40.0% |
| ! | GAGGGAGCTTATGAAAGTAT+TGG | - | chr4.1:40712698-40712717 | MS.gene09111:intron | 40.0% |
| ! | GCGCAACTTTTGACAAATCA+CGG | - | chr4.1:40711694-40711713 | MS.gene09111:intron | 40.0% |
| ! | TGAAGTATGAAGGCATACCT+TGG | + | chr4.1:40714119-40714138 | None:intergenic | 40.0% |
| !! | CAATGGGTTTGCTAGAATCA+CGG | + | chr4.1:40711661-40711680 | None:intergenic | 40.0% |
| !! | CCAACACCTGTTGTTTCAAA+AGG | + | chr4.1:40711004-40711023 | None:intergenic | 40.0% |
| !! | GAATGACATTGGTTCTGCAA+AGG | - | chr4.1:40710298-40710317 | MS.gene09111:CDS | 40.0% |
| !! | GGTGCTTATGCATGTTTTTG+AGG | - | chr4.1:40712679-40712698 | MS.gene09111:intron | 40.0% |
| !! | GTACTGGTGTATCACCTTTT+AGG | - | chr4.1:40711288-40711307 | MS.gene09111:intron | 40.0% |
| !! | TGGTGGATTTGCTAGAATCA+CGG | - | chr4.1:40711576-40711595 | MS.gene09111:intron | 40.0% |
| !! | TTTTGTTTCCTCACAGCTTC+AGG | + | chr4.1:40714351-40714370 | None:intergenic | 40.0% |
| !!! | CCTTTTGAAACAACAGGTGT+TGG | - | chr4.1:40711001-40711020 | MS.gene09111:intron | 40.0% |
| !!! | GAGAAAGTGTTGGTAGGTTT+TGG | - | chr4.1:40711504-40711523 | MS.gene09111:intron | 40.0% |
| !!! | GTGCCTTATTTTCATGCAGA+CGG | + | chr4.1:40711457-40711476 | None:intergenic | 40.0% |
| AAAAAGAGGCCAACCTAGAG+GGG | - | chr4.1:40712349-40712368 | MS.gene09111:intron | 45.0% | |
| AAAACAGGAAGAGAGGGGAA+AGG | - | chr4.1:40713685-40713704 | MS.gene09111:intron | 45.0% | |
| AAACAGGAAGAGAGGGGAAA+GGG | - | chr4.1:40713686-40713705 | MS.gene09111:intron | 45.0% | |
| AATAAGTCAGCAAAGCGGCA+GGG | - | chr4.1:40713132-40713151 | MS.gene09111:CDS | 45.0% | |
| ACCTACCAACACTTTCTCCA+AGG | + | chr4.1:40711502-40711521 | None:intergenic | 45.0% | |
| ACGCCTGAATAAGCTACTCA+TGG | + | chr4.1:40712646-40712665 | None:intergenic | 45.0% | |
| ACTCCCTCCAGTTAACTAAG+TGG | - | chr4.1:40711852-40711871 | MS.gene09111:intron | 45.0% | |
| ACTCTTGGCACACAATCTCT+AGG | - | chr4.1:40712264-40712283 | MS.gene09111:intron | 45.0% | |
| ACTCTTTGCACACACTCTCT+AGG | - | chr4.1:40712060-40712079 | MS.gene09111:intron | 45.0% | |
| ATGTGGTCATGTAGAGACCA+GGG | - | chr4.1:40713427-40713446 | MS.gene09111:intron | 45.0% | |
| CAAAAAGAGGCCAACCTAGA+GGG | - | chr4.1:40712348-40712367 | MS.gene09111:intron | 45.0% | |
| CAATTGGGTAGGACTGTGAT+CGG | + | chr4.1:40711133-40711152 | None:intergenic | 45.0% | |
| CATTCTGGGTTCATTTGGGT+TGG | - | chr4.1:40712619-40712638 | MS.gene09111:intron | 45.0% | |
| CATTGACAAGGGTTGCTGTA+TGG | - | chr4.1:40713019-40713038 | MS.gene09111:intron | 45.0% | |
| CCGGTTTACAAGTCAAGTGA+GGG | - | chr4.1:40713655-40713674 | MS.gene09111:intron | 45.0% | |
| CTAAACCTGCGCTATACCTA+GGG | - | chr4.1:40712091-40712110 | MS.gene09111:intron | 45.0% | |
| CTATACCTAGGGACAGGAAA+AGG | - | chr4.1:40712102-40712121 | MS.gene09111:intron | 45.0% | |
| CTCCGTACAAGCTATTCTCT+GGG | + | chr4.1:40712756-40712775 | None:intergenic | 45.0% | |
| GAAAAGGGTCTTAGCGAAAG+AGG | - | chr4.1:40712118-40712137 | MS.gene09111:intron | 45.0% | |
| GAGGATAGTCAGATCACTAG+AGG | - | chr4.1:40710596-40710615 | MS.gene09111:intron | 45.0% | |
| GAGTATGTTTGGTATCGCAG+TGG | + | chr4.1:40711744-40711763 | None:intergenic | 45.0% | |
| GCGCATGTTTGGTATCACAA+TGG | + | chr4.1:40711678-40711697 | None:intergenic | 45.0% | |
| GCTCTGACACACACAAAAAC+AGG | + | chr4.1:40711242-40711261 | None:intergenic | 45.0% | |
| GCTGCTAAGAGGAATGACAT+TGG | - | chr4.1:40710287-40710306 | MS.gene09111:CDS | 45.0% | |
| GGTCCATGAGTAGCTTATTC+AGG | - | chr4.1:40712640-40712659 | MS.gene09111:intron | 45.0% | |
| GTAATAGTTGTGGGTAGCAG+AGG | - | chr4.1:40713187-40713206 | MS.gene09111:intron | 45.0% | |
| GTTTCAGGCAGGAGTAATTG+AGG | - | chr4.1:40714209-40714228 | MS.gene09111:intron | 45.0% | |
| TAGAGATTGTGTGCCAAGAG+TGG | + | chr4.1:40712265-40712284 | None:intergenic | 45.0% | |
| TATGTGGTCATGTAGAGACC+AGG | - | chr4.1:40713426-40713445 | MS.gene09111:intron | 45.0% | |
| TCACAGTCCTACCCAATTGA+AGG | - | chr4.1:40711134-40711153 | MS.gene09111:intron | 45.0% | |
| TCAGCAATTGCTCGTACTGT+GGG | - | chr4.1:40713995-40714014 | MS.gene09111:intron | 45.0% | |
| TCCGTACAAGCTATTCTCTG+GGG | + | chr4.1:40712755-40712774 | None:intergenic | 45.0% | |
| TCGTGGAAGTTATGCTTAGG+TGG | - | chr4.1:40710516-40710535 | MS.gene09111:CDS | 45.0% | |
| TCTAAACCTGCGCTATACCT+AGG | - | chr4.1:40712090-40712109 | MS.gene09111:intron | 45.0% | |
| TGACTGTGGAAGCCTATCAA+AGG | + | chr4.1:40713105-40713124 | None:intergenic | 45.0% | |
| TGCATAGCAACAGCCATTTC+AGG | + | chr4.1:40714076-40714095 | None:intergenic | 45.0% | |
| TGGAGATGAGAAAGTTGCGT+TGG | - | chr4.1:40710413-40710432 | MS.gene09111:intron | 45.0% | |
| TGGCTAAGTCATGCATTGTC+TGG | - | chr4.1:40713723-40713742 | MS.gene09111:intron | 45.0% | |
| TTCAGCAATTGCTCGTACTG+TGG | - | chr4.1:40713994-40714013 | MS.gene09111:intron | 45.0% | |
| TTGAGATCTGTCACTGACAC+CGG | - | chr4.1:40710340-40710359 | MS.gene09111:CDS | 45.0% | |
| ! | ACCGGTTTACAAGTCAAGTG+AGG | - | chr4.1:40713654-40713673 | MS.gene09111:intron | 45.0% |
| ! | ACGGTGGCTCACTGTAATTT+TGG | - | chr4.1:40711713-40711732 | MS.gene09111:intron | 45.0% |
| ! | AGAGAGTGTGTGCAAAGAGT+GGG | + | chr4.1:40712060-40712079 | None:intergenic | 45.0% |
| ! | ATGCACCTTGGAGAAAGTGT+TGG | - | chr4.1:40711494-40711513 | MS.gene09111:intron | 45.0% |
| ! | GAGCATCTGCTTCTAAAGAC+TGG | - | chr4.1:40712507-40712526 | MS.gene09111:intron | 45.0% |
| ! | GAGGCATTCTGGGTTCATTT+GGG | - | chr4.1:40712615-40712634 | MS.gene09111:intron | 45.0% |
| ! | GCACTGACAGTTCTAATCGA+AGG | + | chr4.1:40710847-40710866 | None:intergenic | 45.0% |
| ! | GCTAGTTATTTCGAGATCCC+TGG | + | chr4.1:40713270-40713289 | None:intergenic | 45.0% |
| ! | TAGAGAGTGTGTGCAAAGAG+TGG | + | chr4.1:40712061-40712080 | None:intergenic | 45.0% |
| ! | TTCTAAAGACTGGGCTTCCA+AGG | - | chr4.1:40712517-40712536 | MS.gene09111:intron | 45.0% |
| !! | ACCTTGGAGAAAGTGTTGGT+AGG | - | chr4.1:40711498-40711517 | MS.gene09111:intron | 45.0% |
| !! | CATATTCGGTGTCAGACATG+TGG | - | chr4.1:40711157-40711176 | MS.gene09111:intron | 45.0% |
| !! | CCCTCACTTGACTTGTAAAC+CGG | + | chr4.1:40713658-40713677 | None:intergenic | 45.0% |
| !! | TGGCACACAATCTCTAGGAT+AGG | - | chr4.1:40712269-40712288 | MS.gene09111:intron | 45.0% |
| !! | TTGCACACACTCTCTAGGAT+AGG | - | chr4.1:40712065-40712084 | MS.gene09111:intron | 45.0% |
| AATCGGTAGACAGTCGCAGA+AGG | + | chr4.1:40712172-40712191 | None:intergenic | 50.0% | |
| ACCTATCTCCAGCTCGTACA+GGG | - | chr4.1:40712429-40712448 | MS.gene09111:intron | 50.0% | |
| ACTTCTATGACTACGGGGAG+AGG | + | chr4.1:40714157-40714176 | None:intergenic | 50.0% | |
| AGCAGAGGCGACAGAATGTA+TGG | - | chr4.1:40713202-40713221 | MS.gene09111:intron | 50.0% | |
| AGGGTCTTAGCGAAAGAGGT+AGG | - | chr4.1:40712122-40712141 | MS.gene09111:intron | 50.0% | |
| CAACACTAACACGTCAACGC+TGG | + | chr4.1:40711216-40711235 | None:intergenic | 50.0% | |
| CACAACTTCCTGAAGCTGTG+AGG | - | chr4.1:40714340-40714359 | MS.gene09111:intron | 50.0% | |
| CACAGCTTCAGGAAGTTGTG+CGG | + | chr4.1:40714340-40714359 | None:intergenic | 50.0% | |
| CAGATGCTCACCCATGACTA+AGG | + | chr4.1:40712496-40712515 | None:intergenic | 50.0% | |
| CAGGAAGATGCTATAGCCGA+GGG | - | chr4.1:40714487-40714506 | MS.gene09111:CDS | 50.0% | |
| CCATTTCAGGAGCCTTCATG+AGG | + | chr4.1:40714063-40714082 | None:intergenic | 50.0% | |
| CCTCATGAAGGCTCCTGAAA+TGG | - | chr4.1:40714060-40714079 | MS.gene09111:intron | 50.0% | |
| CTTTACAATGGCGGCTGTAG+TGG | - | chr4.1:40712944-40712963 | MS.gene09111:intron | 50.0% | |
| GAATAAGTCAGCAAAGCGGC+AGG | - | chr4.1:40713131-40713150 | MS.gene09111:CDS | 50.0% | |
| GCAAAAAGAGGCCAACCTAG+AGG | - | chr4.1:40712347-40712366 | MS.gene09111:intron | 50.0% | |
| GCTCCGTACAAGCTATTCTC+TGG | + | chr4.1:40712757-40712776 | None:intergenic | 50.0% | |
| GGGTCTTAGCGAAAGAGGTA+GGG | - | chr4.1:40712123-40712142 | MS.gene09111:intron | 50.0% | |
| TACCTATCTCCAGCTCGTAC+AGG | - | chr4.1:40712428-40712447 | MS.gene09111:intron | 50.0% | |
| TCGTACAGGGGAAAGGGAAT+GGG | - | chr4.1:40712442-40712461 | MS.gene09111:intron | 50.0% | |
| TCTGTCACTGACACCGGATA+CGG | - | chr4.1:40710346-40710365 | MS.gene09111:CDS | 50.0% | |
| TGACCTGACTTTAGCGAGTC+TGG | + | chr4.1:40714548-40714567 | None:intergenic | 50.0% | |
| TGCAAGGAGCAAGCAACCTT+TGG | + | chr4.1:40712577-40712596 | None:intergenic | 50.0% | |
| ! | AAGACCCTTTTCCTGTCCCT+AGG | + | chr4.1:40712110-40712129 | None:intergenic | 50.0% |
| ! | AATGGCGGCTGTAGTGGTTT+TGG | - | chr4.1:40712950-40712969 | MS.gene09111:intron | 50.0% |
| ! | ATGGCGGCTGTAGTGGTTTT+GGG | - | chr4.1:40712951-40712970 | MS.gene09111:intron | 50.0% |
| ! | CGAGGCATTCTGGGTTCATT+TGG | - | chr4.1:40712614-40712633 | MS.gene09111:intron | 50.0% |
| ! | GACAGTTCTAATCGAAGGCG+TGG | + | chr4.1:40710842-40710861 | None:intergenic | 50.0% |
| ! | GCCCCAGAGAATAGCTTGTA+CGG | - | chr4.1:40712751-40712770 | MS.gene09111:intron | 50.0% |
| AACTGCACGTACCTCCTCTG+CGG | + | chr4.1:40714397-40714416 | None:intergenic | 55.0% | |
| AAGTTGTGCGGCTGTCTCAC+CGG | + | chr4.1:40714328-40714347 | None:intergenic | 55.0% | |
| CCTATCTCCAGCTCGTACAG+GGG | - | chr4.1:40712430-40712449 | MS.gene09111:intron | 55.0% | |
| CGTACAGGGGAAAGGGAATG+GGG | - | chr4.1:40712443-40712462 | MS.gene09111:intron | 55.0% | |
| CTCGTACAGGGGAAAGGGAA+TGG | - | chr4.1:40712441-40712460 | MS.gene09111:intron | 55.0% | |
| GCAGGAAGATGCTATAGCCG+AGG | - | chr4.1:40714486-40714505 | MS.gene09111:CDS | 55.0% | |
| GTGAGTGTCAGTGCCGTATC+CGG | + | chr4.1:40710362-40710381 | None:intergenic | 55.0% | |
| TAAGTGCACACAGCCCCTCT+AGG | + | chr4.1:40712365-40712384 | None:intergenic | 55.0% | |
| TCCAGCTCGTACAGGGGAAA+GGG | - | chr4.1:40712436-40712455 | MS.gene09111:intron | 55.0% | |
| TCGCAGAAGGCCCTCTAGTT+TGG | + | chr4.1:40712159-40712178 | None:intergenic | 55.0% | |
| ! | GTTCTAATCGAAGGCGTGGC+TGG | + | chr4.1:40710838-40710857 | None:intergenic | 55.0% |
| !! | AAAGGGTGCTTGGGGGTAAC+TGG | - | chr4.1:40713703-40713722 | MS.gene09111:intron | 55.0% |
| !! | AAGAGAGGGGAAAGGGTGCT+TGG | - | chr4.1:40713693-40713712 | MS.gene09111:intron | 55.0% |
| !! | AGAGAGGGGAAAGGGTGCTT+GGG | - | chr4.1:40713694-40713713 | MS.gene09111:intron | 55.0% |
| !! | TGGCGGCTGTAGTGGTTTTG+GGG | - | chr4.1:40712952-40712971 | MS.gene09111:intron | 55.0% |
| !!! | GCTGTAGTGGTTTTGGGGTC+TGG | - | chr4.1:40712957-40712976 | MS.gene09111:intron | 55.0% |
| CCCCTGTACGAGCTGGAGAT+AGG | + | chr4.1:40712433-40712452 | None:intergenic | 60.0% | |
| CCTGCGCTATACCTAGGGAC+AGG | - | chr4.1:40712096-40712115 | MS.gene09111:intron | 60.0% | |
| CCTGTCCCTAGGTATAGCGC+AGG | + | chr4.1:40712099-40712118 | None:intergenic | 60.0% | |
| CTCCAGCTCGTACAGGGGAA+AGG | - | chr4.1:40712435-40712454 | MS.gene09111:intron | 60.0% | |
| GGGCCAGACTCGCTAAAGTC+AGG | - | chr4.1:40714542-40714561 | MS.gene09111:CDS | 60.0% | |
| TCCCTTTCCCCTGTACGAGC+TGG | + | chr4.1:40712440-40712459 | None:intergenic | 60.0% | |
| TCCTCTGCGGCACTTTGAGC+AGG | + | chr4.1:40714384-40714403 | None:intergenic | 60.0% | |
| TGCACACAGCCCCTCTAGGT+TGG | + | chr4.1:40712361-40712380 | None:intergenic | 60.0% | |
| !! | ACCTGCTCAAAGTGCCGCAG+AGG | - | chr4.1:40714380-40714399 | MS.gene09111:intron | 60.0% |
| !! | AGAGGGGAAAGGGTGCTTGG+GGG | - | chr4.1:40713696-40713715 | MS.gene09111:intron | 60.0% |
| !! | GAGAGGGGAAAGGGTGCTTG+GGG | - | chr4.1:40713695-40713714 | MS.gene09111:intron | 60.0% |
| !! | TGCTCAAAGTGCCGCAGAGG+AGG | - | chr4.1:40714383-40714402 | MS.gene09111:intron | 60.0% |
| CTACGGGGAGAGGAGAGAGC+AGG | + | chr4.1:40714147-40714166 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40710030 | 40714570 | 40710030 | ID=MS.gene09111 |
| chr4.1 | mRNA | 40710030 | 40714570 | 40710030 | ID=MS.gene09111.t1;Parent=MS.gene09111 |
| chr4.1 | exon | 40714459 | 40714570 | 40714459 | ID=MS.gene09111.t1.exon1;Parent=MS.gene09111.t1 |
| chr4.1 | CDS | 40714459 | 40714570 | 40714459 | ID=cds.MS.gene09111.t1;Parent=MS.gene09111.t1 |
| chr4.1 | exon | 40714281 | 40714357 | 40714281 | ID=MS.gene09111.t1.exon2;Parent=MS.gene09111.t1 |
| chr4.1 | CDS | 40714281 | 40714357 | 40714281 | ID=cds.MS.gene09111.t1;Parent=MS.gene09111.t1 |
| chr4.1 | exon | 40713085 | 40713187 | 40713085 | ID=MS.gene09111.t1.exon3;Parent=MS.gene09111.t1 |
| chr4.1 | CDS | 40713085 | 40713187 | 40713085 | ID=cds.MS.gene09111.t1;Parent=MS.gene09111.t1 |
| chr4.1 | exon | 40710480 | 40710601 | 40710480 | ID=MS.gene09111.t1.exon4;Parent=MS.gene09111.t1 |
| chr4.1 | CDS | 40710480 | 40710601 | 40710480 | ID=cds.MS.gene09111.t1;Parent=MS.gene09111.t1 |
| chr4.1 | exon | 40710196 | 40710384 | 40710196 | ID=MS.gene09111.t1.exon5;Parent=MS.gene09111.t1 |
| chr4.1 | CDS | 40710196 | 40710384 | 40710196 | ID=cds.MS.gene09111.t1;Parent=MS.gene09111.t1 |
| chr4.1 | exon | 40710030 | 40710110 | 40710030 | ID=MS.gene09111.t1.exon6;Parent=MS.gene09111.t1 |
| chr4.1 | CDS | 40710030 | 40710110 | 40710030 | ID=cds.MS.gene09111.t1;Parent=MS.gene09111.t1 |
| Gene Sequence |
| Protein sequence |
