Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019280.t1 | XP_003611137.1 | 96.7 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 1.60E-155 | 558.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019280.t1 | Q9LN71 | 66.7 | 288 | 88 | 3 | 50 | 330 | 65 | 351 | 2.0e-95 | 350.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019280.t1 | G7KDG0 | 96.7 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 1.1e-155 | 558.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034468 | MS.gene019280 | PPI |
| MS.gene019280 | MS.gene007227 | PPI |
| MS.gene019280 | MS.gene84339 | PPI |
| MS.gene019280 | MS.gene35396 | PPI |
| MS.gene66767 | MS.gene019280 | PPI |
| MS.gene019280 | MS.gene62798 | PPI |
| MS.gene019280 | MS.gene072809 | PPI |
| MS.gene019278 | MS.gene019280 | PPI |
| MS.gene019280 | MS.gene43051 | PPI |
| MS.gene019280 | MS.gene015550 | PPI |
| MS.gene019280 | MS.gene050322 | PPI |
| MS.gene019280 | MS.gene72994 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019280.t1 | MTR_5g010720 | 99.394 | 330 | 2 | 0 | 1 | 330 | 1 | 330 | 0.0 | 671 |
| MS.gene019280.t1 | MTR_4g102870 | 72.586 | 321 | 74 | 6 | 13 | 330 | 5 | 314 | 1.35e-159 | 451 |
| MS.gene019280.t1 | MTR_7g076010 | 50.467 | 321 | 136 | 6 | 19 | 330 | 4 | 310 | 2.10e-89 | 272 |
| MS.gene019280.t1 | MTR_8g105330 | 49.270 | 274 | 118 | 4 | 58 | 330 | 30 | 283 | 8.91e-85 | 259 |
| MS.gene019280.t1 | MTR_1g032440 | 46.395 | 319 | 141 | 8 | 12 | 330 | 9 | 297 | 1.41e-81 | 250 |
| MS.gene019280.t1 | MTR_1g032440 | 46.395 | 319 | 141 | 8 | 12 | 330 | 9 | 297 | 6.96e-81 | 249 |
| MS.gene019280.t1 | MTR_7g088500 | 38.767 | 227 | 93 | 3 | 80 | 300 | 34 | 220 | 3.24e-47 | 161 |
| MS.gene019280.t1 | MTR_3g107995 | 29.231 | 260 | 152 | 9 | 88 | 330 | 71 | 315 | 2.01e-22 | 97.1 |
| MS.gene019280.t1 | MTR_1g011380 | 28.682 | 258 | 161 | 7 | 86 | 330 | 92 | 339 | 1.21e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019280.t1 | AT4G11680 | 64.048 | 331 | 93 | 7 | 6 | 330 | 26 | 336 | 8.36e-125 | 363 |
| MS.gene019280.t1 | AT4G11680 | 64.048 | 331 | 93 | 7 | 6 | 330 | 26 | 336 | 1.27e-124 | 363 |
| MS.gene019280.t1 | AT1G12760 | 69.000 | 300 | 87 | 2 | 37 | 330 | 52 | 351 | 8.26e-124 | 361 |
| MS.gene019280.t1 | AT1G12760 | 69.643 | 280 | 79 | 2 | 57 | 330 | 1 | 280 | 1.19e-116 | 340 |
| MS.gene019280.t1 | AT1G63170 | 67.458 | 295 | 91 | 3 | 41 | 330 | 29 | 323 | 1.46e-113 | 334 |
| MS.gene019280.t1 | AT3G61180 | 58.681 | 288 | 110 | 4 | 44 | 330 | 42 | 321 | 2.33e-111 | 328 |
| MS.gene019280.t1 | AT1G68070 | 46.497 | 314 | 136 | 4 | 20 | 330 | 6 | 290 | 6.20e-89 | 270 |
| MS.gene019280.t1 | AT2G01735 | 47.266 | 256 | 116 | 3 | 53 | 307 | 44 | 281 | 6.87e-73 | 229 |
| MS.gene019280.t1 | AT2G01735 | 48.649 | 222 | 98 | 2 | 53 | 273 | 44 | 250 | 1.21e-65 | 207 |
| MS.gene019280.t1 | AT1G80400 | 27.731 | 238 | 130 | 8 | 86 | 298 | 106 | 326 | 4.33e-21 | 93.6 |
| MS.gene019280.t1 | AT4G32600 | 28.125 | 256 | 144 | 10 | 97 | 330 | 124 | 361 | 4.87e-21 | 93.6 |
| MS.gene019280.t1 | AT4G32600 | 28.125 | 256 | 144 | 10 | 97 | 330 | 124 | 361 | 4.87e-21 | 93.6 |
| MS.gene019280.t1 | AT4G26580 | 25.688 | 218 | 126 | 7 | 97 | 307 | 99 | 287 | 2.06e-11 | 64.7 |
| MS.gene019280.t1 | AT4G26580 | 25.688 | 218 | 126 | 7 | 97 | 307 | 99 | 287 | 2.06e-11 | 64.7 |
Find 91 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTCGTTCTGCTGTTTC+TGG | 0.113154 | 5.2:-31329818 | MS.gene019280:CDS |
| CACAGCCTCAACGGCATTTC+CGG | 0.201324 | 5.2:+31329989 | None:intergenic |
| AAGATTCTCCTCAGCTTTAC+TGG | 0.236698 | 5.2:-31327714 | MS.gene019280:intron |
| TCATTTATTTGGTGGATTAT+TGG | 0.257070 | 5.2:-31327775 | MS.gene019280:CDS |
| AGGTTATGTATAGTCTTTCT+TGG | 0.315938 | 5.2:-31327558 | MS.gene019280:CDS |
| CGGCAGTGTTGCGAAACATT+TGG | 0.324377 | 5.2:-31327818 | MS.gene019280:intron |
| GGTGGATTATTGGATTCTAC+TGG | 0.372489 | 5.2:-31327765 | MS.gene019280:CDS |
| TGGTTCCAGTTATGTTTCAT+TGG | 0.384792 | 5.2:-31329798 | MS.gene019280:CDS |
| TTGCGCCAATGAAACATAAC+TGG | 0.386200 | 5.2:+31329793 | None:intergenic |
| GCATTTCCGGAGCTTCATTC+CGG | 0.387248 | 5.2:+31330002 | None:intergenic |
| TTGTGATTCTCGATATCGTT+TGG | 0.398024 | 5.2:-31330069 | MS.gene019280:CDS |
| CCGTTGAGGCTGTGGATTGC+GGG | 0.401372 | 5.2:-31329980 | MS.gene019280:CDS |
| GTTGCAATGTGTTCTTCATA+TGG | 0.402716 | 5.2:-31329951 | MS.gene019280:CDS |
| GTTGCGCTGGCCTGTGTCAT+TGG | 0.414076 | 5.2:-31327507 | MS.gene019280:CDS |
| AGTAAAGCTGAGGAGAATCT+TGG | 0.421975 | 5.2:+31327716 | None:intergenic |
| TCAGCAAGAACATGTTCAAT+AGG | 0.434852 | 5.2:+31323461 | None:intergenic |
| CTTCGTCATTGTGGCGGGAA+CGG | 0.437914 | 5.2:-31330038 | MS.gene019280:CDS |
| CGGAAATGCCGTTGAGGCTG+TGG | 0.443205 | 5.2:-31329988 | MS.gene019280:CDS |
| AATAAATGAAAACATGGTAT+TGG | 0.445274 | 5.2:+31327789 | None:intergenic |
| TCGTCATCGAATGCGGTAGC+AGG | 0.452616 | 5.2:-31329881 | MS.gene019280:CDS |
| AGGAATAATGACCGAGTGTC+GGG | 0.456706 | 5.2:-31323492 | MS.gene019280:CDS |
| TCTTTATGCTGTTGCAGACC+AGG | 0.456796 | 5.2:-31327445 | MS.gene019280:intron |
| GGAGGAACCGCCGCCGGGAT+TGG | 0.464726 | 5.2:+31330267 | None:intergenic |
| ATGCGGTAGCAGGTTCTGAT+AGG | 0.472844 | 5.2:-31329871 | MS.gene019280:CDS |
| GCCGCCGGGATTGGTGAGAA+AGG | 0.476623 | 5.2:+31330276 | None:intergenic |
| AAGCGGCCGTCGAACGATGC+GGG | 0.483688 | 5.2:-31330170 | MS.gene019280:CDS |
| GTAGTGGGAATTTCAGTTCA+AGG | 0.485833 | 5.2:-31329844 | MS.gene019280:CDS |
| TAGAAGAACGACAAAGCGAT+TGG | 0.486101 | 5.2:-31330108 | MS.gene019280:CDS |
| TTCGCCTTCGTCATTGTGGC+GGG | 0.487248 | 5.2:-31330043 | MS.gene019280:CDS |
| TCGGTCATTATTCCTCCAAC+AGG | 0.487971 | 5.2:+31323500 | None:intergenic |
| TTTCTCACCAATCCCGGCGG+CGG | 0.492874 | 5.2:-31330274 | MS.gene019280:CDS |
| GTAAAGCTGAGGAGAATCTT+GGG | 0.502198 | 5.2:+31327717 | None:intergenic |
| GAAGGAAGCGTGCGGCTTGG+AGG | 0.503723 | 5.2:+31330200 | None:intergenic |
| TCGGAGGAGGAACCGCCGCC+GGG | 0.504312 | 5.2:+31330262 | None:intergenic |
| ATCGGAGGAGGAACCGCCGC+CGG | 0.506560 | 5.2:+31330261 | None:intergenic |
| ACGTTGGCGACGACGGCGAC+CGG | 0.511663 | 5.2:+31330225 | None:intergenic |
| TTTGAGCCGGAATGAAGCTC+CGG | 0.515420 | 5.2:-31330008 | MS.gene019280:CDS |
| GACGAAGGAAGCGTGCGGCT+TGG | 0.516675 | 5.2:+31330197 | None:intergenic |
| ACTCCCTTTCTCACCAATCC+CGG | 0.519708 | 5.2:-31330280 | MS.gene019280:CDS |
| GGATTCTACTGGGTATCAGC+TGG | 0.519815 | 5.2:-31327754 | MS.gene019280:CDS |
| CGCTTCCTTCGTCAAGCAAG+CGG | 0.520375 | 5.2:-31330187 | MS.gene019280:CDS |
| AGAAGAACGACAAAGCGATT+GGG | 0.524313 | 5.2:-31330107 | MS.gene019280:CDS |
| GTGGATTATTGGATTCTACT+GGG | 0.526393 | 5.2:-31327764 | MS.gene019280:CDS |
| GTTGTTGAGGTCATCGGAGG+AGG | 0.532200 | 5.2:+31330249 | None:intergenic |
| CCGCCGGGATTGGTGAGAAA+GGG | 0.536556 | 5.2:+31330277 | None:intergenic |
| GATAACAATCAAGGTCCTGT+TGG | 0.541510 | 5.2:-31323515 | MS.gene019280:CDS |
| ACCGGAGTTGTTGAGGTCAT+CGG | 0.545010 | 5.2:+31330243 | None:intergenic |
| AACAATCAAGGTCCTGTTGG+AGG | 0.549616 | 5.2:-31323512 | MS.gene019280:CDS |
| AAACAAACTGATAACAATCA+AGG | 0.553925 | 5.2:-31323524 | MS.gene019280:CDS |
| CCACCAAATAAATGAAAACA+TGG | 0.554733 | 5.2:+31327783 | None:intergenic |
| TTGAGTATAGGAGAAGGAGA+AGG | 0.554902 | 5.2:-31329916 | MS.gene019280:CDS |
| CGATTGGGCGTATTCGAAGC+CGG | 0.557403 | 5.2:-31330092 | MS.gene019280:CDS |
| CCCGCAATCCACAGCCTCAA+CGG | 0.557587 | 5.2:+31329980 | None:intergenic |
| TAAAGAAGTGCAATGATACA+TGG | 0.558649 | 5.2:+31327462 | None:intergenic |
| TGAACATGTTCTTGCTGAGG+AGG | 0.560231 | 5.2:-31323456 | MS.gene019280:CDS |
| GGGAATTTCAGTTCAAGGGA+AGG | 0.560360 | 5.2:-31329839 | MS.gene019280:CDS |
| AAGGCTCCCGCATCGTTCGA+CGG | 0.563222 | 5.2:+31330164 | None:intergenic |
| TAGTGGGAATTTCAGTTCAA+GGG | 0.567413 | 5.2:-31329843 | MS.gene019280:CDS |
| GGTTCTGATAGGATTGGTAG+TGG | 0.567433 | 5.2:-31329860 | MS.gene019280:CDS |
| TTCTACTGGGTATCAGCTGG+TGG | 0.568485 | 5.2:-31327751 | MS.gene019280:CDS |
| CTTCGCCTTCGTCATTGTGG+CGG | 0.571163 | 5.2:-31330044 | MS.gene019280:CDS |
| GGAGGAGACGTTGGCGACGA+CGG | 0.572322 | 5.2:+31330218 | None:intergenic |
| TGTTCTTGCTGAGGAGGATG+CGG | 0.573369 | 5.2:-31323450 | None:intergenic |
| TCCGATGACCTCAACAACTC+CGG | 0.579073 | 5.2:-31330244 | MS.gene019280:CDS |
| ACGATATCGAGAATCACAAC+CGG | 0.580305 | 5.2:+31330073 | None:intergenic |
| AATTTGATGAAGAGAGTACT+AGG | 0.581019 | 5.2:-31329772 | MS.gene019280:intron |
| GCCGTTGAGGCTGTGGATTG+CGG | 0.586081 | 5.2:-31329981 | MS.gene019280:CDS |
| GAACTTCGCCTTCGTCATTG+TGG | 0.588422 | 5.2:-31330047 | MS.gene019280:CDS |
| GTGCGGCTTGGAGGAGACGT+TGG | 0.591058 | 5.2:+31330209 | None:intergenic |
| GACGGCGACCGGAGTTGTTG+AGG | 0.594522 | 5.2:+31330236 | None:intergenic |
| GAGGAATAATGACCGAGTGT+CGG | 0.596428 | 5.2:-31323493 | MS.gene019280:CDS |
| ACGTTCTTCGTCATCGAATG+CGG | 0.597603 | 5.2:-31329888 | MS.gene019280:CDS |
| AGGTGAATCAGCCCGACACT+CGG | 0.599908 | 5.2:+31323481 | None:intergenic |
| ATGTCTGATGAGGAACGGTT+CGG | 0.599968 | 5.2:+31330313 | None:intergenic |
| CGATGATGTCTGATGAGGAA+CGG | 0.605271 | 5.2:+31330308 | None:intergenic |
| GACGGCCGCTTGCTTGACGA+AGG | 0.611750 | 5.2:+31330182 | None:intergenic |
| GTAGCAGGTTCTGATAGGAT+TGG | 0.613195 | 5.2:-31329866 | MS.gene019280:CDS |
| CAAGCGGCCGTCGAACGATG+CGG | 0.613490 | 5.2:-31330171 | MS.gene019280:CDS |
| GTTTCGCGAACAACGACGGA+AGG | 0.617701 | 5.2:+31330145 | None:intergenic |
| GGCAGTTTCGCGAACAACGA+CGG | 0.621073 | 5.2:+31330141 | None:intergenic |
| TATTGAACATGTTCTTGCTG+AGG | 0.624382 | 5.2:-31323459 | MS.gene019280:CDS |
| AGGACAAACCAGTAAAGCTG+AGG | 0.632785 | 5.2:+31327706 | None:intergenic |
| AAGCTCCGGAAATGCCGTTG+AGG | 0.640748 | 5.2:-31329994 | MS.gene019280:CDS |
| CGTTCCCGCCACAATGACGA+AGG | 0.662267 | 5.2:+31330039 | None:intergenic |
| AACAGCGATACCAATGACAC+AGG | 0.663749 | 5.2:+31327497 | None:intergenic |
| GTTCTGATAGGATTGGTAGT+GGG | 0.672302 | 5.2:-31329859 | MS.gene019280:CDS |
| GGAGTTGTTGAGGTCATCGG+AGG | 0.672635 | 5.2:+31330246 | None:intergenic |
| TCGTTCTTCTAATTGCTCTG+CGG | 0.681822 | 5.2:+31330120 | None:intergenic |
| TGAATCGATGATGTCTGATG+AGG | 0.686853 | 5.2:+31330303 | None:intergenic |
| CCCTTTCTCACCAATCCCGG+CGG | 0.736966 | 5.2:-31330277 | MS.gene019280:CDS |
| TGCTTGACGAAGGAAGCGTG+CGG | 0.756061 | 5.2:+31330192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 31323451 | 31330344 | 31323451 | ID=MS.gene019280 |
| chr5.2 | mRNA | 31323451 | 31330344 | 31323451 | ID=MS.gene019280.t1;Parent=MS.gene019280 |
| chr5.2 | exon | 31329773 | 31330344 | 31329773 | ID=MS.gene019280.t1.exon1;Parent=MS.gene019280.t1 |
| chr5.2 | CDS | 31329773 | 31330344 | 31329773 | ID=cds.MS.gene019280.t1;Parent=MS.gene019280.t1 |
| chr5.2 | exon | 31327715 | 31327834 | 31327715 | ID=MS.gene019280.t1.exon2;Parent=MS.gene019280.t1 |
| chr5.2 | CDS | 31327715 | 31327834 | 31327715 | ID=cds.MS.gene019280.t1;Parent=MS.gene019280.t1 |
| chr5.2 | exon | 31327446 | 31327578 | 31327446 | ID=MS.gene019280.t1.exon3;Parent=MS.gene019280.t1 |
| chr5.2 | CDS | 31327446 | 31327578 | 31327446 | ID=cds.MS.gene019280.t1;Parent=MS.gene019280.t1 |
| chr5.2 | exon | 31323451 | 31323615 | 31323451 | ID=MS.gene019280.t1.exon4;Parent=MS.gene019280.t1 |
| chr5.2 | CDS | 31323451 | 31323615 | 31323451 | ID=cds.MS.gene019280.t1;Parent=MS.gene019280.t1 |
| Gene Sequence |
| Protein sequence |