Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72994.t1 | XP_013457683.1 | 99.2 | 371 | 3 | 0 | 1 | 371 | 1 | 371 | 4.10E-205 | 723.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72994.t1 | Q9LN71 | 61.9 | 357 | 126 | 2 | 25 | 371 | 52 | 408 | 1.8e-121 | 437.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72994.t1 | A0A072UPE3 | 99.2 | 371 | 3 | 0 | 1 | 371 | 1 | 371 | 3.0e-205 | 723.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene72994 | 0.815001 | 1.16E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene72994 | -0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene72994 | 0.835503 | 1.62E-56 | -1.69E-46 |
| MS.gene050359 | MS.gene72994 | 0.814891 | 1.22E-51 | -1.69E-46 |
| MS.gene050384 | MS.gene72994 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene050386 | MS.gene72994 | 0.804833 | 1.79E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene72994 | 0.83267 | 8.28E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene72994 | 0.847087 | 1.44E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene72994 | 0.82077 | 5.75E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene72994 | 0.817653 | 2.95E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene72994 | 0.812391 | 4.34E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene72994 | 0.82417 | 9.33E-54 | -1.69E-46 |
| MS.gene051856 | MS.gene72994 | 0.802676 | 5.01E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene72994 | -0.829781 | 4.25E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene72994 | 0.80181 | 7.55E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene72994 | 0.821119 | 4.78E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene72994 | 0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene72994 | 0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene72994 | 0.802528 | 5.37E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene72994 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene72994 | 0.818595 | 1.81E-52 | -1.69E-46 |
| MS.gene059290 | MS.gene72994 | 0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene72994 | 0.83353 | 5.06E-56 | -1.69E-46 |
| MS.gene060932 | MS.gene72994 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene72994 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene72994 | 0.821721 | 3.47E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene72994 | 0.825414 | 4.75E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72994 | MS.gene62798 | PPI |
| MS.gene034468 | MS.gene72994 | PPI |
| MS.gene072809 | MS.gene72994 | PPI |
| MS.gene015550 | MS.gene72994 | PPI |
| MS.gene66767 | MS.gene72994 | PPI |
| MS.gene72994 | MS.gene84339 | PPI |
| MS.gene43051 | MS.gene72994 | PPI |
| MS.gene35396 | MS.gene72994 | PPI |
| MS.gene050322 | MS.gene72994 | PPI |
| MS.gene007227 | MS.gene72994 | PPI |
| MS.gene019278 | MS.gene72994 | PPI |
| MS.gene019280 | MS.gene72994 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72994.t1 | MTR_4g102870 | 99.191 | 371 | 3 | 0 | 1 | 371 | 1 | 371 | 0.0 | 765 |
| MS.gene72994.t1 | MTR_5g010720 | 74.603 | 378 | 82 | 6 | 5 | 371 | 13 | 387 | 1.95e-180 | 506 |
| MS.gene72994.t1 | MTR_7g076010 | 54.133 | 375 | 156 | 6 | 1 | 369 | 1 | 365 | 6.15e-124 | 362 |
| MS.gene72994.t1 | MTR_8g105330 | 52.125 | 353 | 136 | 9 | 21 | 371 | 15 | 336 | 1.13e-122 | 357 |
| MS.gene72994.t1 | MTR_1g032440 | 46.995 | 366 | 166 | 7 | 7 | 371 | 12 | 350 | 1.92e-109 | 324 |
| MS.gene72994.t1 | MTR_1g032440 | 43.042 | 309 | 152 | 6 | 7 | 314 | 12 | 297 | 1.43e-76 | 239 |
| MS.gene72994.t1 | MTR_7g088500 | 41.472 | 299 | 137 | 4 | 68 | 365 | 34 | 295 | 1.24e-75 | 236 |
| MS.gene72994.t1 | MTR_3g107995 | 36.304 | 303 | 163 | 8 | 78 | 360 | 69 | 361 | 5.54e-48 | 167 |
| MS.gene72994.t1 | MTR_1g011380 | 36.213 | 301 | 149 | 7 | 85 | 360 | 103 | 385 | 4.14e-44 | 157 |
| MS.gene72994.t1 | MTR_7g088560 | 37.634 | 186 | 104 | 4 | 185 | 362 | 2 | 183 | 5.42e-34 | 124 |
| MS.gene72994.t1 | MTR_5g096410 | 31.387 | 274 | 140 | 6 | 91 | 357 | 100 | 332 | 5.00e-30 | 118 |
| MS.gene72994.t1 | MTR_7g088570 | 37.037 | 189 | 113 | 3 | 177 | 360 | 100 | 287 | 9.12e-30 | 116 |
| MS.gene72994.t1 | MTR_5g096410 | 31.408 | 277 | 139 | 7 | 91 | 357 | 100 | 335 | 7.50e-29 | 115 |
| MS.gene72994.t1 | MTR_5g096410 | 31.734 | 271 | 134 | 7 | 91 | 357 | 100 | 323 | 5.30e-28 | 112 |
| MS.gene72994.t1 | MTR_3g071300 | 57.447 | 47 | 19 | 1 | 312 | 357 | 102 | 148 | 3.13e-12 | 64.7 |
| MS.gene72994.t1 | MTR_1g492830 | 43.836 | 73 | 28 | 2 | 310 | 369 | 82 | 154 | 5.32e-12 | 65.1 |
| MS.gene72994.t1 | MTR_5g082940 | 51.923 | 52 | 24 | 1 | 310 | 360 | 97 | 148 | 8.47e-12 | 63.5 |
| MS.gene72994.t1 | MTR_8g072020 | 50.000 | 60 | 29 | 1 | 307 | 365 | 436 | 495 | 1.18e-11 | 66.2 |
| MS.gene72994.t1 | MTR_8g072020 | 50.000 | 60 | 29 | 1 | 307 | 365 | 397 | 456 | 1.21e-11 | 66.2 |
| MS.gene72994.t1 | MTR_4g116460 | 56.000 | 50 | 20 | 2 | 313 | 360 | 480 | 529 | 1.65e-11 | 65.9 |
| MS.gene72994.t1 | MTR_4g116460 | 56.000 | 50 | 20 | 2 | 313 | 360 | 437 | 486 | 1.65e-11 | 65.9 |
| MS.gene72994.t1 | MTR_8g099515 | 34.559 | 136 | 80 | 5 | 240 | 367 | 255 | 389 | 3.70e-11 | 64.7 |
| MS.gene72994.t1 | MTR_3g067995 | 31.132 | 106 | 68 | 2 | 257 | 358 | 151 | 255 | 4.05e-11 | 63.5 |
| MS.gene72994.t1 | MTR_5g026260 | 50.000 | 56 | 27 | 1 | 311 | 365 | 500 | 555 | 4.62e-11 | 64.7 |
| MS.gene72994.t1 | MTR_3g110190 | 47.273 | 55 | 28 | 1 | 310 | 363 | 86 | 140 | 5.60e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72994.t1 | AT4G11680 | 66.949 | 354 | 99 | 5 | 15 | 366 | 51 | 388 | 4.42e-157 | 447 |
| MS.gene72994.t1 | AT1G12760 | 63.228 | 378 | 95 | 4 | 21 | 371 | 48 | 408 | 5.23e-155 | 442 |
| MS.gene72994.t1 | AT4G11680 | 61.880 | 383 | 99 | 6 | 15 | 366 | 51 | 417 | 1.47e-150 | 431 |
| MS.gene72994.t1 | AT1G12760 | 63.842 | 354 | 84 | 4 | 45 | 371 | 1 | 337 | 6.60e-146 | 416 |
| MS.gene72994.t1 | AT3G61180 | 55.645 | 372 | 153 | 7 | 3 | 371 | 17 | 379 | 8.36e-142 | 407 |
| MS.gene72994.t1 | AT1G63170 | 62.105 | 380 | 128 | 6 | 2 | 370 | 5 | 379 | 5.72e-141 | 405 |
| MS.gene72994.t1 | AT1G68070 | 47.397 | 365 | 162 | 7 | 7 | 366 | 3 | 342 | 7.47e-114 | 335 |
| MS.gene72994.t1 | AT2G01735 | 51.376 | 327 | 132 | 8 | 46 | 365 | 50 | 356 | 2.74e-108 | 322 |
| MS.gene72994.t1 | AT2G01735 | 52.778 | 216 | 84 | 4 | 46 | 258 | 50 | 250 | 1.84e-70 | 221 |
| MS.gene72994.t1 | AT1G80400 | 33.974 | 312 | 173 | 9 | 74 | 365 | 106 | 404 | 2.42e-48 | 169 |
| MS.gene72994.t1 | AT4G32600 | 36.913 | 298 | 162 | 9 | 85 | 365 | 124 | 412 | 3.46e-46 | 164 |
| MS.gene72994.t1 | AT4G32600 | 36.913 | 298 | 162 | 9 | 85 | 365 | 124 | 412 | 3.46e-46 | 164 |
| MS.gene72994.t1 | AT5G55970 | 28.808 | 302 | 160 | 8 | 65 | 360 | 89 | 341 | 5.03e-28 | 112 |
| MS.gene72994.t1 | AT5G55970 | 28.808 | 302 | 160 | 8 | 65 | 360 | 89 | 341 | 5.03e-28 | 112 |
| MS.gene72994.t1 | AT4G26580 | 30.035 | 283 | 143 | 9 | 85 | 360 | 99 | 333 | 9.96e-28 | 112 |
| MS.gene72994.t1 | AT4G26580 | 30.035 | 283 | 143 | 9 | 85 | 360 | 99 | 333 | 9.96e-28 | 112 |
| MS.gene72994.t1 | AT4G26400 | 34.177 | 79 | 52 | 0 | 282 | 360 | 207 | 285 | 2.79e-11 | 64.7 |
| MS.gene72994.t1 | AT4G26400 | 34.177 | 79 | 52 | 0 | 282 | 360 | 207 | 285 | 2.79e-11 | 64.7 |
Find 103 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTTATGTATTGTCTTCT+TGG | 0.132406 | 8.3:-18966695 | MS.gene72994:CDS |
| TTCTGGACAGTATGTGAATT+TGG | 0.268627 | 8.3:-18970321 | MS.gene72994:CDS |
| GGTGGGTCATTGGATTCTAT+TGG | 0.291565 | 8.3:-18968948 | MS.gene72994:CDS |
| GTGGGTCATTGGATTCTATT+GGG | 0.294558 | 8.3:-18968947 | MS.gene72994:CDS |
| TCCGATGAATTTCCGATTAA+CGG | 0.296045 | 8.3:+18970776 | None:intergenic |
| GTGGTTGGAGGTGGTGGTAG+TGG | 0.323967 | 8.3:-18970371 | MS.gene72994:CDS |
| GGTAATGTGGTTGGAGGTGG+TGG | 0.346929 | 8.3:-18970377 | MS.gene72994:CDS |
| TGCCTTTCTGCCTATGATGA+TGG | 0.353931 | 8.3:-18963358 | MS.gene72994:CDS |
| CCACACAGGTACAGTGAAAA+TGG | 0.354719 | 8.3:+18963305 | None:intergenic |
| TCGTAGTATGGCAAAGCATT+TGG | 0.355509 | 8.3:-18969001 | MS.gene72994:intron |
| TCGGCAAGCACGTGTTCAAT+TGG | 0.359520 | 8.3:+18963791 | None:intergenic |
| TTTGATTCAATGGATAGTTC+TGG | 0.369104 | 8.3:-18970338 | MS.gene72994:CDS |
| CGGCAAGCACGTGTTCAATT+GGG | 0.378266 | 8.3:+18963792 | None:intergenic |
| AGGTTATGTATTGTCTTCTT+GGG | 0.379260 | 8.3:-18966694 | MS.gene72994:CDS |
| GGATTTGAGCTTTGATTCAA+TGG | 0.382308 | 8.3:-18970348 | MS.gene72994:CDS |
| CGCGCCGCTTGCCGGAGACT+CGG | 0.383551 | 8.3:+18970719 | None:intergenic |
| TGGTTGGAGGTGGTGGTAGT+GGG | 0.385771 | 8.3:-18970370 | MS.gene72994:CDS |
| GTAGAAACCGCGCCGCTTGC+CGG | 0.393702 | 8.3:+18970711 | None:intergenic |
| GGTGGTAATGTGGTTGGAGG+TGG | 0.405346 | 8.3:-18970380 | MS.gene72994:CDS |
| GCCTTTCTGCCTATGATGAT+GGG | 0.406498 | 8.3:-18963357 | MS.gene72994:CDS |
| TTCTCCGTGCGCCGAGTCTC+CGG | 0.418084 | 8.3:-18970730 | MS.gene72994:CDS |
| ACGGATCCGACGCCGTTAAT+CGG | 0.418527 | 8.3:-18970788 | MS.gene72994:CDS |
| ACTGTACCTGTGTGGACAAA+TGG | 0.436237 | 8.3:-18963297 | MS.gene72994:CDS |
| GAGAATTCTCCGTCCGGAGT+TGG | 0.436539 | 8.3:+18970748 | None:intergenic |
| ATGATTCTCCTAACCTCTAC+TGG | 0.449181 | 8.3:-18968897 | MS.gene72994:intron |
| TCAATCATTATTCCTCCAAC+AGG | 0.450655 | 8.3:+18963830 | None:intergenic |
| AGAGCAAACCAGTAGAGGTT+AGG | 0.455565 | 8.3:+18968889 | None:intergenic |
| TGGAAGAACGGCAAAGCGAT+TGG | 0.456957 | 8.3:-18970619 | MS.gene72994:CDS |
| GGCAATGGTGGTAATGTGGT+TGG | 0.461873 | 8.3:-18970386 | MS.gene72994:CDS |
| GGAGACTGCGGCGGAGCAGT+TGG | 0.462789 | 8.3:-18970639 | MS.gene72994:CDS |
| TAGTTCAACCCCATCATCAT+AGG | 0.470745 | 8.3:+18963348 | None:intergenic |
| TTGGCGCAGTACGGTGATGA+TGG | 0.473696 | 8.3:-18970302 | MS.gene72994:CDS |
| CGAGCTCGCCGCTTAGGTTG+TGG | 0.474092 | 8.3:-18970499 | MS.gene72994:CDS |
| CACAACCTAAGCGGCGAGCT+CGG | 0.476821 | 8.3:+18970500 | None:intergenic |
| AATCGCCGAGCTCGCCGCTT+AGG | 0.476892 | 8.3:-18970505 | MS.gene72994:CDS |
| GGAAGAACGGCAAAGCGATT+GGG | 0.485045 | 8.3:-18970618 | MS.gene72994:CDS |
| TACGACAAGCAAGCGGGCGG+AGG | 0.501945 | 8.3:-18970691 | MS.gene72994:CDS |
| ATTGCGTTGGCATGCATCAT+TGG | 0.504258 | 8.3:-18966643 | MS.gene72994:CDS |
| CCCCATCATCATAGGCAGAA+AGG | 0.506362 | 8.3:+18963356 | None:intergenic |
| GGTTGGAGGTGGTGGTAGTG+GGG | 0.509837 | 8.3:-18970369 | MS.gene72994:CDS |
| ACATGGAAGGCAACAGCAAA+CGG | 0.512995 | 8.3:+18966615 | None:intergenic |
| TCTGTATGCAGTTGCAGACC+AGG | 0.523895 | 8.3:-18966581 | MS.gene72994:intron |
| AATGGTGGTAATGTGGTTGG+AGG | 0.527408 | 8.3:-18970383 | MS.gene72994:CDS |
| TGCGCCGAGTCTCCGGCAAG+CGG | 0.529911 | 8.3:-18970723 | MS.gene72994:CDS |
| GAATTCAAACATGGCGACGA+CGG | 0.534390 | 8.3:-18970807 | None:intergenic |
| TACAGAAGCGCAATGATACA+TGG | 0.534624 | 8.3:+18966598 | None:intergenic |
| GAATTTCGTGTTTATTATTG+CGG | 0.536826 | 8.3:-18970558 | MS.gene72994:CDS |
| TTCGTGTTTATTATTGCGGC+GGG | 0.543055 | 8.3:-18970554 | MS.gene72994:CDS |
| AGTAGAGGTTAGGAGAATCA+TGG | 0.547728 | 8.3:+18968899 | None:intergenic |
| CGCACGGAGAATTCTCCGTC+CGG | 0.549074 | 8.3:+18970742 | None:intergenic |
| CAAGATGTTATACTTGCAGA+GGG | 0.551554 | 8.3:+18963252 | None:intergenic |
| CGTGCTTGCCGATGAGGATG+CGG | 0.557865 | 8.3:-18963780 | MS.gene72994:intron |
| AAGTAGCAGCCATGGTCAAG+AGG | 0.560452 | 8.3:-18963227 | MS.gene72994:CDS |
| GATGCGTGAACCGTCGATGA+TGG | 0.561472 | 8.3:-18970666 | MS.gene72994:CDS |
| CGGCGGAGCAGTTGGAAGAA+CGG | 0.561738 | 8.3:-18970631 | MS.gene72994:CDS |
| TCTACACTTCCTCTTGACCA+TGG | 0.562004 | 8.3:+18963218 | None:intergenic |
| CTTGCCGGAGACTCGGCGCA+CGG | 0.562168 | 8.3:+18970726 | None:intergenic |
| CGAGTCTCCGGCAAGCGGCG+CGG | 0.563537 | 8.3:-18970718 | MS.gene72994:CDS |
| GATAATACACAAGGACCTGT+TGG | 0.564160 | 8.3:-18963845 | MS.gene72994:CDS |
| TTCTATTGGGTATCAGCTGA+TGG | 0.564231 | 8.3:-18968934 | MS.gene72994:CDS |
| AATAAAAGAAAACATTGTGT+TGG | 0.567231 | 8.3:+18968972 | None:intergenic |
| ATCTTGAAAAGTAGCAGCCA+TGG | 0.568994 | 8.3:-18963235 | MS.gene72994:CDS |
| AGGAGACGGGTGCGGATGCG+AGG | 0.570219 | 8.3:-18970419 | MS.gene72994:CDS |
| CCTTTCTGCCTATGATGATG+GGG | 0.570361 | 8.3:-18963356 | MS.gene72994:CDS |
| AGATGTTATACTTGCAGAGG+GGG | 0.574123 | 8.3:+18963254 | None:intergenic |
| TCAAGATGTTATACTTGCAG+AGG | 0.581995 | 8.3:+18963251 | None:intergenic |
| GGTTTCTACGACAAGCAAGC+GGG | 0.582045 | 8.3:-18970697 | MS.gene72994:CDS |
| CGGATGCGAGGAGAGGTGAA+TGG | 0.583839 | 8.3:-18970407 | MS.gene72994:CDS |
| TTTCGTGTTTATTATTGCGG+CGG | 0.586288 | 8.3:-18970555 | MS.gene72994:CDS |
| GCCGTTAATCGGAAATTCAT+CGG | 0.592072 | 8.3:-18970777 | MS.gene72994:CDS |
| TATGTGAATTTGGCGCAGTA+CGG | 0.593446 | 8.3:-18970311 | MS.gene72994:CDS |
| CGATTGGGCGTATTCGAAGC+CGG | 0.593816 | 8.3:-18970603 | MS.gene72994:CDS |
| GGCAAGCACGTGTTCAATTG+GGG | 0.597692 | 8.3:+18963793 | None:intergenic |
| TGAACACGTGCTTGCCGATG+AGG | 0.597996 | 8.3:-18963786 | MS.gene72994:CDS |
| TTGAGTATAGGAGACGGGTG+CGG | 0.599547 | 8.3:-18970427 | MS.gene72994:CDS |
| GTCTCCCTCACCATCATCGA+CGG | 0.601299 | 8.3:+18970656 | None:intergenic |
| ACAACATACCGCATCCTCAT+CGG | 0.601312 | 8.3:+18963772 | None:intergenic |
| TGGTGATTCTTGATATTCTG+TGG | 0.603674 | 8.3:-18970580 | MS.gene72994:CDS |
| GAGAGAGAGCAAACCAGTAG+AGG | 0.607407 | 8.3:+18968884 | None:intergenic |
| ACGGGTGCGGATGCGAGGAG+AGG | 0.613694 | 8.3:-18970414 | MS.gene72994:CDS |
| CAGTGAAAATGGTGACCACA+AGG | 0.618872 | 8.3:+18963316 | None:intergenic |
| CGAGGAGAGGTGAATGGCAA+TGG | 0.619080 | 8.3:-18970401 | MS.gene72994:CDS |
| GAACTAAGACAGCTTCCTTG+TGG | 0.621210 | 8.3:-18963331 | MS.gene72994:CDS |
| CCTAAAATCCACAACCTAAG+CGG | 0.621985 | 8.3:+18970491 | None:intergenic |
| GAATGGCAATGGTGGTAATG+TGG | 0.622986 | 8.3:-18970390 | MS.gene72994:CDS |
| AATACACAAGGACCTGTTGG+AGG | 0.623675 | 8.3:-18963842 | MS.gene72994:CDS |
| CGGTTTCTACGACAAGCAAG+CGG | 0.627173 | 8.3:-18970698 | MS.gene72994:CDS |
| TCATCGGACGAATCCAACTC+CGG | 0.630172 | 8.3:-18970761 | MS.gene72994:CDS |
| GGAGAGGTGAATGGCAATGG+TGG | 0.634880 | 8.3:-18970398 | MS.gene72994:CDS |
| GAAGCGCAATGATACATGGA+AGG | 0.640715 | 8.3:+18966602 | None:intergenic |
| GATGGTGAGGGAGACTGCGG+CGG | 0.643226 | 8.3:-18970648 | MS.gene72994:CDS |
| TTCTACGACAAGCAAGCGGG+CGG | 0.647736 | 8.3:-18970694 | MS.gene72994:CDS |
| GAATTTCCGATTAACGGCGT+CGG | 0.654543 | 8.3:+18970782 | None:intergenic |
| ACGGTGATGATGGTTCTACA+AGG | 0.661590 | 8.3:-18970292 | MS.gene72994:intron |
| AGAATATCAAGAATCACCAC+CGG | 0.672219 | 8.3:+18970584 | None:intergenic |
| CGGACGAATCCAACTCCGGA+CGG | 0.678528 | 8.3:-18970757 | MS.gene72994:CDS |
| GTGAACCGTCGATGATGGTG+AGG | 0.680229 | 8.3:-18970661 | MS.gene72994:CDS |
| GATGATGGTGAGGGAGACTG+CGG | 0.684916 | 8.3:-18970651 | MS.gene72994:CDS |
| TGAACCGTCGATGATGGTGA+GGG | 0.687021 | 8.3:-18970660 | MS.gene72994:CDS |
| GTGCAGCCATTTGTCCACAC+AGG | 0.694074 | 8.3:+18963291 | None:intergenic |
| AAGCTTGCTGATAATACACA+AGG | 0.697762 | 8.3:-18963854 | MS.gene72994:CDS |
| TTGGGCGTATTCGAAGCCGG+TGG | 0.707354 | 8.3:-18970600 | MS.gene72994:CDS |
| AAGATGTTATACTTGCAGAG+GGG | 0.723861 | 8.3:+18963253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18963219 | 18970819 | 18963219 | ID=MS.gene72994 |
| chr8.3 | mRNA | 18963219 | 18970819 | 18963219 | ID=MS.gene72994.t1;Parent=MS.gene72994 |
| chr8.3 | exon | 18970293 | 18970819 | 18970293 | ID=MS.gene72994.t1.exon1;Parent=MS.gene72994.t1 |
| chr8.3 | CDS | 18970293 | 18970819 | 18970293 | ID=cds.MS.gene72994.t1;Parent=MS.gene72994.t1 |
| chr8.3 | exon | 18968898 | 18969017 | 18968898 | ID=MS.gene72994.t1.exon2;Parent=MS.gene72994.t1 |
| chr8.3 | CDS | 18968898 | 18969017 | 18968898 | ID=cds.MS.gene72994.t1;Parent=MS.gene72994.t1 |
| chr8.3 | exon | 18966582 | 18966714 | 18966582 | ID=MS.gene72994.t1.exon3;Parent=MS.gene72994.t1 |
| chr8.3 | CDS | 18966582 | 18966714 | 18966582 | ID=cds.MS.gene72994.t1;Parent=MS.gene72994.t1 |
| chr8.3 | exon | 18963781 | 18963942 | 18963781 | ID=MS.gene72994.t1.exon4;Parent=MS.gene72994.t1 |
| chr8.3 | CDS | 18963781 | 18963942 | 18963781 | ID=cds.MS.gene72994.t1;Parent=MS.gene72994.t1 |
| chr8.3 | exon | 18963219 | 18963392 | 18963219 | ID=MS.gene72994.t1.exon5;Parent=MS.gene72994.t1 |
| chr8.3 | CDS | 18963219 | 18963392 | 18963219 | ID=cds.MS.gene72994.t1;Parent=MS.gene72994.t1 |
| Gene Sequence |
| Protein sequence |
