Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019322.t1 | KEH27428.1 | 100 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 8.10E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019322.t1 | Q9SW09 | 59.4 | 192 | 43 | 3 | 1 | 177 | 1 | 172 | 6.1e-46 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019322.t1 | A0A072UEC5 | 100.0 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 5.9e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019322 | MS.gene93753 | PPI |
| MS.gene047001 | MS.gene019322 | PPI |
| MS.gene019322 | MS.gene056722 | PPI |
| MS.gene019556 | MS.gene019322 | PPI |
| MS.gene001756 | MS.gene019322 | PPI |
| MS.gene94561 | MS.gene019322 | PPI |
| MS.gene019322 | MS.gene040115 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019322.t1 | MTR_5g010025 | 100.000 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 2.96e-130 | 363 |
| MS.gene019322.t1 | MTR_8g098850 | 93.889 | 180 | 8 | 1 | 1 | 180 | 1 | 177 | 2.73e-120 | 337 |
| MS.gene019322.t1 | MTR_8g098850 | 93.333 | 135 | 6 | 1 | 46 | 180 | 1 | 132 | 2.06e-83 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019322.t1 | AT4G25740 | 81.935 | 155 | 23 | 1 | 1 | 155 | 1 | 150 | 6.97e-80 | 235 |
| MS.gene019322.t1 | AT5G52650 | 80.000 | 155 | 30 | 1 | 1 | 155 | 1 | 154 | 1.75e-73 | 219 |
| MS.gene019322.t1 | AT5G41520 | 75.974 | 154 | 32 | 5 | 1 | 153 | 1 | 150 | 2.16e-70 | 211 |
| MS.gene019322.t1 | AT4G25740 | 63.277 | 177 | 32 | 1 | 1 | 177 | 1 | 144 | 5.82e-60 | 184 |
| MS.gene019322.t1 | AT5G41520 | 75.926 | 108 | 22 | 4 | 46 | 153 | 1 | 104 | 5.74e-43 | 140 |
Find 68 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGACCTGCTGGTGAATT+TGG | 0.215916 | 5.4:+4494629 | MS.gene019322:CDS |
| AGCTTAATCACTTGCAGATT+TGG | 0.235590 | 5.4:-4494255 | None:intergenic |
| TGCAAAGAAGGATTTCAATT+TGG | 0.241273 | 5.4:+4494209 | MS.gene019322:CDS |
| AGATTTGGCACATCAATTTC+TGG | 0.267877 | 5.4:-4494240 | None:intergenic |
| TTGCTTGGATGAACTATTAC+TGG | 0.272334 | 5.4:+4494319 | MS.gene019322:CDS |
| GCTGACTACAGGCCTTCTTT+TGG | 0.293788 | 5.4:+4494674 | MS.gene019322:CDS |
| CCTGGCTTCGGTCGTGGTTC+TGG | 0.294525 | 5.4:+4496379 | MS.gene019322:CDS |
| TTTGATGGAGAAAGGAGATT+TGG | 0.304890 | 5.4:+4494575 | MS.gene019322:CDS |
| CTCCTTTCTCCATCAAATCT+TGG | 0.337377 | 5.4:-4494569 | None:intergenic |
| GGTCGTGGTTCTGGTGGCTT+TGG | 0.353851 | 5.4:+4496388 | MS.gene019322:CDS |
| TACTGGTTCCTTACCAATGA+TGG | 0.373159 | 5.4:+4494336 | MS.gene019322:CDS |
| CAGGGCCCTGGTGGTAGACC+TGG | 0.396705 | 5.4:+4496361 | MS.gene019322:intron |
| AGGCCCTTCGGTGGTCCTCC+TGG | 0.403851 | 5.4:+4494441 | MS.gene019322:CDS |
| TAAGCATCGTTTGAACTAGT+TGG | 0.424537 | 5.4:-4496415 | None:intergenic |
| GAGAAACTCAATTCCATCAT+TGG | 0.425707 | 5.4:-4494349 | None:intergenic |
| GATTTGGCACATCAATTTCT+GGG | 0.426500 | 5.4:-4494239 | None:intergenic |
| CCACCGAAGGGCCTTCCAGC+TGG | 0.431358 | 5.4:-4494432 | None:intergenic |
| CTGACACTATTGCAGGGCCC+TGG | 0.433738 | 5.4:+4496349 | MS.gene019322:intron |
| ATGATGGAATTGAGTTTCTC+AGG | 0.441503 | 5.4:+4494352 | MS.gene019322:CDS |
| AATTCACCAGCAGGTCCTCT+TGG | 0.445100 | 5.4:-4494626 | None:intergenic |
| AAGCCAGCTGGAAGGCCCTT+CGG | 0.456351 | 5.4:+4494429 | MS.gene019322:CDS |
| GCCTGCTTCTTCAAAGTAGC+AGG | 0.457047 | 5.4:-4494405 | None:intergenic |
| ATTCACCAGCAGGTCCTCTT+GGG | 0.458492 | 5.4:-4494625 | None:intergenic |
| AGGGGCCCACCAAGATTTGA+TGG | 0.462295 | 5.4:+4494560 | MS.gene019322:intron |
| TGATGCAGAGCTTCAAGTCT+AGG | 0.468441 | 5.4:+4494277 | MS.gene019322:CDS |
| GGGAGTTTGCTATGCAAAGA+AGG | 0.473090 | 5.4:+4494197 | MS.gene019322:CDS |
| CTTTCTCCATCAAATCTTGG+TGG | 0.474542 | 5.4:-4494566 | None:intergenic |
| AAGAAGCAGGCTAAGCCAGC+TGG | 0.479610 | 5.4:+4494417 | MS.gene019322:CDS |
| GTGGAGCTCCAGCTGACTAC+AGG | 0.482076 | 5.4:+4494663 | MS.gene019322:CDS |
| GGTAGACCTGGCTTCGGTCG+TGG | 0.484946 | 5.4:+4496373 | MS.gene019322:CDS |
| GATGGAGAAAGGAGATTTGG+TGG | 0.486392 | 5.4:+4494578 | MS.gene019322:CDS |
| GCCTGCTACTTTGAAGAAGC+AGG | 0.489244 | 5.4:+4494404 | MS.gene019322:CDS |
| GGCTTCGGTCGTGGTTCTGG+TGG | 0.490892 | 5.4:+4496382 | MS.gene019322:CDS |
| CAGGTCCTCTTGGGCCTCCA+CGG | 0.492606 | 5.4:-4494616 | None:intergenic |
| CACCAAGATTTGATGGAGAA+AGG | 0.498036 | 5.4:+4494567 | MS.gene019322:CDS |
| TTTCTCCATCAAATCTTGGT+GGG | 0.498924 | 5.4:-4494565 | None:intergenic |
| AAGATTATTACCCCAAAAGA+AGG | 0.511567 | 5.4:-4494686 | None:intergenic |
| CCTGGTGGTAGACCTGGCTT+CGG | 0.513224 | 5.4:+4496367 | MS.gene019322:CDS |
| AAAGAAGGCCTGTAGTCAGC+TGG | 0.516901 | 5.4:-4494671 | None:intergenic |
| TCTCCTCCAAATTCACCAGC+AGG | 0.527703 | 5.4:-4494635 | None:intergenic |
| GTCCTCCTGGTGATCGCCCT+AGG | 0.527814 | 5.4:+4494454 | MS.gene019322:CDS |
| GGACCTGCTGGTGAATTTGG+AGG | 0.530997 | 5.4:+4494632 | MS.gene019322:CDS |
| CCAGAACCACGACCGAAGCC+AGG | 0.533716 | 5.4:-4496379 | None:intergenic |
| CCGAAGCCAGGTCTACCACC+AGG | 0.539431 | 5.4:-4496367 | None:intergenic |
| ACTCAATTCCATCATTGGTA+AGG | 0.545851 | 5.4:-4494344 | None:intergenic |
| GGAGGCCCAAGAGGACCTGC+TGG | 0.551228 | 5.4:+4494620 | MS.gene019322:CDS |
| GATATTTGCAGATCTCTCTA+CGG | 0.553257 | 5.4:-4494076 | None:intergenic |
| ATCACCAGGAGGACCACCGA+AGG | 0.560619 | 5.4:-4494445 | None:intergenic |
| ACACTATTGCAGGGCCCTGG+TGG | 0.571292 | 5.4:+4496352 | MS.gene019322:intron |
| AGCAGGCTAAGCCAGCTGGA+AGG | 0.574627 | 5.4:+4494421 | MS.gene019322:CDS |
| ATCTGCAAATATCTCTTCCA+AGG | 0.578875 | 5.4:+4494086 | MS.gene019322:CDS |
| GATGCAGAGCTTCAAGTCTA+GGG | 0.581648 | 5.4:+4494278 | MS.gene019322:CDS |
| AATTACCTAGGGCGATCACC+AGG | 0.586300 | 5.4:-4494459 | None:intergenic |
| GGCCTCCACGGTATCCATCA+CGG | 0.588978 | 5.4:-4494604 | None:intergenic |
| GTAGCAGGCACAATCTCAGA+TGG | 0.595400 | 5.4:-4494390 | None:intergenic |
| CCAGCTGGAAGGCCCTTCGG+TGG | 0.608072 | 5.4:+4494432 | MS.gene019322:CDS |
| CAAGTCTAGGGAATATGTGA+GGG | 0.617632 | 5.4:+4494290 | MS.gene019322:CDS |
| TCAAGTCTAGGGAATATGTG+AGG | 0.624912 | 5.4:+4494289 | MS.gene019322:CDS |
| TGGTGAATTTGGAGGAGACA+AGG | 0.625150 | 5.4:+4494640 | MS.gene019322:CDS |
| GGATACCGTGGAGGCCCAAG+AGG | 0.629598 | 5.4:+4494611 | MS.gene019322:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637340 | 5.4:+4494590 | MS.gene019322:CDS |
| GGTGAATTTGGAGGAGACAA+GGG | 0.651975 | 5.4:+4494641 | MS.gene019322:CDS |
| TCACCAGGAGGACCACCGAA+GGG | 0.653306 | 5.4:-4494444 | None:intergenic |
| GAATTTGGAGGAGACAAGGG+TGG | 0.675600 | 5.4:+4494644 | MS.gene019322:CDS |
| CGAAGCCAGGTCTACCACCA+GGG | 0.679017 | 5.4:-4496366 | None:intergenic |
| GACCGTGATGGATACCGTGG+AGG | 0.697879 | 5.4:+4494602 | MS.gene019322:CDS |
| GGTGACCGTGATGGATACCG+TGG | 0.715974 | 5.4:+4494599 | MS.gene019322:CDS |
| TACCTAGGGCGATCACCAGG+AGG | 0.721119 | 5.4:-4494456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAATGAATAAAAT+TGG | - | chr5.4:4494028-4494047 | None:intergenic | 10.0% |
| !! | AAATAAATATAAAAATTGAG+TGG | + | chr5.4:4495840-4495859 | MS.gene019322:intron | 10.0% |
| !! | AATAAATATAAAAATTGAGT+GGG | + | chr5.4:4495841-4495860 | MS.gene019322:intron | 10.0% |
| !! | AATTAACTTATATTAAACAA+AGG | - | chr5.4:4495155-4495174 | None:intergenic | 10.0% |
| !!! | TCTAAAATACATATAAACTT+GGG | + | chr5.4:4495115-4495134 | MS.gene019322:intron | 15.0% |
| !!! | TTCTAAAATACATATAAACT+TGG | + | chr5.4:4495114-4495133 | MS.gene019322:intron | 15.0% |
| !!! | TTTATCATGTTTTGTTTTTT+TGG | + | chr5.4:4494508-4494527 | MS.gene019322:intron | 15.0% |
| !! | TCAAATCAAAGATAATATAG+AGG | - | chr5.4:4494898-4494917 | None:intergenic | 20.0% |
| !!! | TAATAGTACTAGTCTATATT+AGG | - | chr5.4:4495977-4495996 | None:intergenic | 20.0% |
| !!! | TCAAGTTTTTTAGTATTGTT+TGG | + | chr5.4:4496228-4496247 | MS.gene019322:intron | 20.0% |
| !!! | TTTAACTAGTTTAATAGAGT+TGG | + | chr5.4:4495306-4495325 | MS.gene019322:intron | 20.0% |
| ! | AAAATTGGATAAAGTAGCAA+AGG | + | chr5.4:4495768-4495787 | MS.gene019322:intron | 25.0% |
| ! | AAGGAAATTGAGTCAATATT+AGG | - | chr5.4:4496068-4496087 | None:intergenic | 25.0% |
| ! | ATCAAGAGACACATAAAAAT+GGG | + | chr5.4:4495487-4495506 | MS.gene019322:intron | 25.0% |
| ! | ATTATATACATGAGGAAAGA+AGG | - | chr5.4:4496293-4496312 | None:intergenic | 25.0% |
| ! | ATTTCAAAAGCTAAATCTAG+CGG | - | chr5.4:4496027-4496046 | None:intergenic | 25.0% |
| ! | CCAATAGAATTATATACATG+AGG | - | chr5.4:4496301-4496320 | None:intergenic | 25.0% |
| ! | CCTCATGTATATAATTCTAT+TGG | + | chr5.4:4496298-4496317 | MS.gene019322:intron | 25.0% |
| ! | TACCTTCTAACATTGAATTA+TGG | + | chr5.4:4496196-4496215 | MS.gene019322:intron | 25.0% |
| ! | TTATTGTGTTGTGTTTGAAT+TGG | + | chr5.4:4494151-4494170 | MS.gene019322:intron | 25.0% |
| ! | TTTCTGTAAAGTGAAAATCT+GGG | - | chr5.4:4495570-4495589 | None:intergenic | 25.0% |
| !! | GTCTTATTAAAGTTTGCAAT+TGG | + | chr5.4:4495047-4495066 | MS.gene019322:intron | 25.0% |
| !! | TGTTCGATTCATTTTGTAAT+GGG | + | chr5.4:4494836-4494855 | MS.gene019322:intron | 25.0% |
| !!! | AAACTGTTGTTATTTTTCAG+AGG | + | chr5.4:4494176-4494195 | MS.gene019322:intron | 25.0% |
| !!! | AACTGTTGTTATTTTTCAGA+GGG | + | chr5.4:4494177-4494196 | MS.gene019322:intron | 25.0% |
| !!! | ATTGTTCTATACAAGTTGAT+AGG | + | chr5.4:4495341-4495360 | MS.gene019322:intron | 25.0% |
| !!! | TTGTTCTATACAAGTTGATA+GGG | + | chr5.4:4495342-4495361 | MS.gene019322:intron | 25.0% |
| !!! | TTTTGGGGTAATAATCTTAT+TGG | + | chr5.4:4494691-4494710 | MS.gene019322:intron | 25.0% |
| !!! | TTTTTGGTTGTTTGATTGAA+TGG | + | chr5.4:4494524-4494543 | MS.gene019322:intron | 25.0% |
| AAATAGAGATTATGTCTTGC+TGG | + | chr5.4:4495685-4495704 | MS.gene019322:intron | 30.0% | |
| AAGATTATTACCCCAAAAGA+AGG | - | chr5.4:4494689-4494708 | None:intergenic | 30.0% | |
| ATAAATACCTAGATTGAGAG+AGG | + | chr5.4:4495736-4495755 | MS.gene019322:intron | 30.0% | |
| ATGTCTTGTGCAATAATCTA+GGG | + | chr5.4:4494110-4494129 | MS.gene019322:intron | 30.0% | |
| ATTCTGCCTACAAAAACATT+TGG | + | chr5.4:4495426-4495445 | MS.gene019322:intron | 30.0% | |
| ATTTCAAAAGCTAAATCCAG+CGG | - | chr5.4:4495936-4495955 | None:intergenic | 30.0% | |
| ATTTGTACAGTAGAAGAAGT+AGG | + | chr5.4:4495519-4495538 | MS.gene019322:intron | 30.0% | |
| CACCATAATTCAATGTTAGA+AGG | - | chr5.4:4496201-4496220 | None:intergenic | 30.0% | |
| CACTTTACAGAAAGAAAGAA+TGG | + | chr5.4:4495577-4495596 | MS.gene019322:intron | 30.0% | |
| CTTTCTGTAAAGTGAAAATC+TGG | - | chr5.4:4495571-4495590 | None:intergenic | 30.0% | |
| GATCAAGAGACACATAAAAA+TGG | + | chr5.4:4495486-4495505 | MS.gene019322:intron | 30.0% | |
| GTACTATTATCAGTATGTCA+CGG | + | chr5.4:4495897-4495916 | MS.gene019322:intron | 30.0% | |
| TAAAATTGGAATCGCGTAAA+TGG | - | chr5.4:4494014-4494033 | None:intergenic | 30.0% | |
| TACTATTATCAGTATGTCAC+GGG | + | chr5.4:4495898-4495917 | MS.gene019322:intron | 30.0% | |
| TATATGCAAAACAAGTGTAG+TGG | + | chr5.4:4495250-4495269 | MS.gene019322:intron | 30.0% | |
| TATGTCTTGTGCAATAATCT+AGG | + | chr5.4:4494109-4494128 | MS.gene019322:intron | 30.0% | |
| TCTGTTATCAGATATGATGA+TGG | + | chr5.4:4494765-4494784 | MS.gene019322:intron | 30.0% | |
| TGCAAAGAAGGATTTCAATT+TGG | + | chr5.4:4494209-4494228 | MS.gene019322:CDS | 30.0% | |
| TGTATAGAACAATGAACCAT+TGG | - | chr5.4:4495334-4495353 | None:intergenic | 30.0% | |
| TTGATTGAATGGAATGTGTT+TGG | + | chr5.4:4494535-4494554 | MS.gene019322:intron | 30.0% | |
| ! | ATTTTTCTGACACTATTGCA+GGG | + | chr5.4:4496343-4496362 | MS.gene019322:intron | 30.0% |
| ! | CTGTTCGATTCATTTTGTAA+TGG | + | chr5.4:4494835-4494854 | MS.gene019322:intron | 30.0% |
| ! | GTTCGATTCATTTTGTAATG+GGG | + | chr5.4:4494837-4494856 | MS.gene019322:intron | 30.0% |
| ! | TATTTTTCTGACACTATTGC+AGG | + | chr5.4:4496342-4496361 | MS.gene019322:intron | 30.0% |
| ! | TTTAATAGAGTTGGTTCCAA+TGG | + | chr5.4:4495315-4495334 | MS.gene019322:intron | 30.0% |
| ! | TTTGTAATGGGGTTATAAGT+GGG | + | chr5.4:4494848-4494867 | MS.gene019322:intron | 30.0% |
| ! | TTTTCATTGTCAAGTAGACT+TGG | + | chr5.4:4494973-4494992 | MS.gene019322:intron | 30.0% |
| !! | AATGTTTTTGTAGGCAGAAT+TGG | - | chr5.4:4495426-4495445 | None:intergenic | 30.0% |
| !! | ATGTTTTTGTAGGCAGAATT+GGG | - | chr5.4:4495425-4495444 | None:intergenic | 30.0% |
| !! | CCAAAACCAAATGTTTTTGT+AGG | - | chr5.4:4495435-4495454 | None:intergenic | 30.0% |
| !! | CCTACAAAAACATTTGGTTT+TGG | + | chr5.4:4495432-4495451 | MS.gene019322:intron | 30.0% |
| !! | TTTTGTAATGGGGTTATAAG+TGG | + | chr5.4:4494847-4494866 | MS.gene019322:intron | 30.0% |
| !!! | ACAAAAACATTTGGTTTTGG+AGG | + | chr5.4:4495435-4495454 | MS.gene019322:intron | 30.0% |
| !!! | CAAAAACATTTGGTTTTGGA+GGG | + | chr5.4:4495436-4495455 | MS.gene019322:intron | 30.0% |
| !!! | GGTTATAAGTGGGTTAATTT+TGG | + | chr5.4:4494858-4494877 | MS.gene019322:intron | 30.0% |
| !!! | TTTTTTCTTCTCTCAAAACC+AGG | - | chr5.4:4495664-4495683 | None:intergenic | 30.0% |
| ACAGTAGAAGAAGTAGGAAA+AGG | + | chr5.4:4495525-4495544 | MS.gene019322:intron | 35.0% | |
| ACTCAATTCCATCATTGGTA+AGG | - | chr5.4:4494347-4494366 | None:intergenic | 35.0% | |
| AGATTTGGCACATCAATTTC+TGG | - | chr5.4:4494243-4494262 | None:intergenic | 35.0% | |
| AGCAATATACACAAGACACA+AGG | - | chr5.4:4494945-4494964 | None:intergenic | 35.0% | |
| AGCTTAATCACTTGCAGATT+TGG | - | chr5.4:4494258-4494277 | None:intergenic | 35.0% | |
| AGTCAATATTAGGCGATTCA+GGG | - | chr5.4:4496058-4496077 | None:intergenic | 35.0% | |
| AGTCTATATTAGGCGATTCA+GGG | - | chr5.4:4495967-4495986 | None:intergenic | 35.0% | |
| ATCTGCAAATATCTCTTCCA+AGG | + | chr5.4:4494086-4494105 | MS.gene019322:CDS | 35.0% | |
| CACATAAAAATGGGTATGCT+TGG | + | chr5.4:4495496-4495515 | MS.gene019322:intron | 35.0% | |
| GAGAAACTCAATTCCATCAT+TGG | - | chr5.4:4494352-4494371 | None:intergenic | 35.0% | |
| GATATTTGCAGATCTCTCTA+CGG | - | chr5.4:4494079-4494098 | None:intergenic | 35.0% | |
| GATTTGGCACATCAATTTCT+GGG | - | chr5.4:4494242-4494261 | None:intergenic | 35.0% | |
| GCAATATACACAAGACACAA+GGG | - | chr5.4:4494944-4494963 | None:intergenic | 35.0% | |
| GTAATTTATTCGACGCTGTT+CGG | + | chr5.4:4494476-4494495 | MS.gene019322:intron | 35.0% | |
| TAGTCTATATTAGGCGATTC+AGG | - | chr5.4:4495968-4495987 | None:intergenic | 35.0% | |
| TCATTCATCATGACAAGTTC+AGG | - | chr5.4:4495390-4495409 | None:intergenic | 35.0% | |
| TTATTGCACAAGACATACCT+TGG | - | chr5.4:4494106-4494125 | None:intergenic | 35.0% | |
| TTGCTTGGATGAACTATTAC+TGG | + | chr5.4:4494319-4494338 | MS.gene019322:CDS | 35.0% | |
| TTTCTCCATCAAATCTTGGT+GGG | - | chr5.4:4494568-4494587 | None:intergenic | 35.0% | |
| TTTGATGGAGAAAGGAGATT+TGG | + | chr5.4:4494575-4494594 | MS.gene019322:CDS | 35.0% | |
| ! | AGCGTCGAATAAATTACCTA+GGG | - | chr5.4:4494473-4494492 | None:intergenic | 35.0% |
| ! | ATGATGGAATTGAGTTTCTC+AGG | + | chr5.4:4494352-4494371 | MS.gene019322:CDS | 35.0% |
| ! | GCGTAAATGGATTCAAAGAA+TGG | - | chr5.4:4494001-4494020 | None:intergenic | 35.0% |
| ! | TAAGCATCGTTTGAACTAGT+TGG | - | chr5.4:4496418-4496437 | None:intergenic | 35.0% |
| !!! | GATTTAGCTTTTGAAATCCG+AGG | + | chr5.4:4495939-4495958 | MS.gene019322:intron | 35.0% |
| AATACCTAGATTGAGAGAGG+AGG | + | chr5.4:4495739-4495758 | MS.gene019322:intron | 40.0% | |
| AATGGAATGTGTTTGGACAG+GGG | + | chr5.4:4494542-4494561 | MS.gene019322:intron | 40.0% | |
| CAAGTCTAGGGAATATGTGA+GGG | + | chr5.4:4494290-4494309 | MS.gene019322:CDS | 40.0% | |
| CACCAAGATTTGATGGAGAA+AGG | + | chr5.4:4494567-4494586 | MS.gene019322:CDS | 40.0% | |
| CTCCTTTCTCCATCAAATCT+TGG | - | chr5.4:4494572-4494591 | None:intergenic | 40.0% | |
| CTTTCTCCATCAAATCTTGG+TGG | - | chr5.4:4494569-4494588 | None:intergenic | 40.0% | |
| GAATGGAATGTGTTTGGACA+GGG | + | chr5.4:4494541-4494560 | MS.gene019322:intron | 40.0% | |
| GAGTCAATATTAGGCGATTC+AGG | - | chr5.4:4496059-4496078 | None:intergenic | 40.0% | |
| GTCAATATTAGGCGATTCAG+GGG | - | chr5.4:4496057-4496076 | None:intergenic | 40.0% | |
| GTCTATATTAGGCGATTCAG+GGG | - | chr5.4:4495966-4495985 | None:intergenic | 40.0% | |
| TATTATCAGTATGTCACGGG+CGG | + | chr5.4:4495901-4495920 | MS.gene019322:intron | 40.0% | |
| TCAAAAGCTAAATCTAGCGG+TGG | - | chr5.4:4496024-4496043 | None:intergenic | 40.0% | |
| TCAAGTCTAGGGAATATGTG+AGG | + | chr5.4:4494289-4494308 | MS.gene019322:CDS | 40.0% | |
| TCAATATTAGGCGATTCAGG+GGG | - | chr5.4:4496056-4496075 | None:intergenic | 40.0% | |
| TCTATATTAGGCGATTCAGG+GGG | - | chr5.4:4495965-4495984 | None:intergenic | 40.0% | |
| TGAATGGAATGTGTTTGGAC+AGG | + | chr5.4:4494540-4494559 | MS.gene019322:intron | 40.0% | |
| ! | AGATTAGTCATAGTGCTACC+TGG | + | chr5.4:4495643-4495662 | MS.gene019322:intron | 40.0% |
| ! | ATGTGAGGGAAACTTTTGCT+TGG | + | chr5.4:4494304-4494323 | MS.gene019322:CDS | 40.0% |
| ! | CAGCGTCGAATAAATTACCT+AGG | - | chr5.4:4494474-4494493 | None:intergenic | 40.0% |
| !! | AAGTTGATAGGGTTGAACGT+CGG | + | chr5.4:4495353-4495372 | MS.gene019322:intron | 40.0% |
| !! | TACTGGTTCCTTACCAATGA+TGG | + | chr5.4:4494336-4494355 | MS.gene019322:CDS | 40.0% |
| AAATTGAGTGGGACAGTGCT+TGG | + | chr5.4:4495852-4495871 | MS.gene019322:intron | 45.0% | |
| ATTATCAGTATGTCACGGGC+GGG | + | chr5.4:4495902-4495921 | MS.gene019322:intron | 45.0% | |
| GATGCAGAGCTTCAAGTCTA+GGG | + | chr5.4:4494278-4494297 | MS.gene019322:CDS | 45.0% | |
| GATGGAGAAAGGAGATTTGG+TGG | + | chr5.4:4494578-4494597 | MS.gene019322:CDS | 45.0% | |
| GGTGAATTTGGAGGAGACAA+GGG | + | chr5.4:4494641-4494660 | MS.gene019322:CDS | 45.0% | |
| TCAAAAGCTAAATCCAGCGG+TGG | - | chr5.4:4495933-4495952 | None:intergenic | 45.0% | |
| TGATGCAGAGCTTCAAGTCT+AGG | + | chr5.4:4494277-4494296 | MS.gene019322:CDS | 45.0% | |
| TGGTGAATTTGGAGGAGACA+AGG | + | chr5.4:4494640-4494659 | MS.gene019322:CDS | 45.0% | |
| ! | CTGACTACAGGCCTTCTTTT+GGG | + | chr5.4:4494675-4494694 | MS.gene019322:CDS | 45.0% |
| ! | TGACTACAGGCCTTCTTTTG+GGG | + | chr5.4:4494676-4494695 | MS.gene019322:CDS | 45.0% |
| !! | GAGAGGAGGCGTCAAAAAAT+TGG | + | chr5.4:4495753-4495772 | MS.gene019322:intron | 45.0% |
| !! | GGGAGTTTGCTATGCAAAGA+AGG | + | chr5.4:4494197-4494216 | MS.gene019322:CDS | 45.0% |
| !!! | CATTTGGTTTTGGAGGGTCT+CGG | + | chr5.4:4495442-4495461 | MS.gene019322:intron | 45.0% |
| AAAGAAGGCCTGTAGTCAGC+TGG | - | chr5.4:4494674-4494693 | None:intergenic | 50.0% | |
| AATTACCTAGGGCGATCACC+AGG | - | chr5.4:4494462-4494481 | None:intergenic | 50.0% | |
| AATTCACCAGCAGGTCCTCT+TGG | - | chr5.4:4494629-4494648 | None:intergenic | 50.0% | |
| AGAGGACCTGCTGGTGAATT+TGG | + | chr5.4:4494629-4494648 | MS.gene019322:CDS | 50.0% | |
| AGGCAGAATTGGGCAGTGAT+TGG | - | chr5.4:4495415-4495434 | None:intergenic | 50.0% | |
| ATTCACCAGCAGGTCCTCTT+GGG | - | chr5.4:4494628-4494647 | None:intergenic | 50.0% | |
| CACCTGAACAACAACCGGTT+TGG | + | chr5.4:4496125-4496144 | MS.gene019322:intron | 50.0% | |
| CCGATCACCTGAACAACAAC+CGG | + | chr5.4:4496120-4496139 | MS.gene019322:intron | 50.0% | |
| CGACAGAAACCTGTCCAAAC+CGG | - | chr5.4:4496142-4496161 | None:intergenic | 50.0% | |
| GAATTTGGAGGAGACAAGGG+TGG | + | chr5.4:4494644-4494663 | MS.gene019322:CDS | 50.0% | |
| GCCTGCTTCTTCAAAGTAGC+AGG | - | chr5.4:4494408-4494427 | None:intergenic | 50.0% | |
| GGGCAACGGGTGAAAAACAA+AGG | - | chr5.4:4496087-4496106 | None:intergenic | 50.0% | |
| GGTTTGGACAGGTTTCTGTC+GGG | + | chr5.4:4496141-4496160 | MS.gene019322:intron | 50.0% | |
| GTAGCAGGCACAATCTCAGA+TGG | - | chr5.4:4494393-4494412 | None:intergenic | 50.0% | |
| GTTGAACGTCGGATGCGTTT+GGG | + | chr5.4:4495364-4495383 | MS.gene019322:intron | 50.0% | |
| TCTCCTCCAAATTCACCAGC+AGG | - | chr5.4:4494638-4494657 | None:intergenic | 50.0% | |
| TGTTGTTCAGGTGATCGGGT+CGG | - | chr5.4:4496118-4496137 | None:intergenic | 50.0% | |
| ! | CCGGTTGTTGTTCAGGTGAT+CGG | - | chr5.4:4496123-4496142 | None:intergenic | 50.0% |
| ! | CGGTTGTTGTTCAGGTGATC+GGG | - | chr5.4:4496122-4496141 | None:intergenic | 50.0% |
| ! | CGGTTTGGACAGGTTTCTGT+CGG | + | chr5.4:4496140-4496159 | MS.gene019322:intron | 50.0% |
| ! | GCTGACTACAGGCCTTCTTT+TGG | + | chr5.4:4494674-4494693 | MS.gene019322:CDS | 50.0% |
| ! | GTCCAAACCGGTTGTTGTTC+AGG | - | chr5.4:4496130-4496149 | None:intergenic | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | + | chr5.4:4494590-4494609 | MS.gene019322:CDS | 50.0% |
| !! | GAACAACAACCGGTTTGGAC+AGG | + | chr5.4:4496130-4496149 | MS.gene019322:intron | 50.0% |
| !! | GCCTGCTACTTTGAAGAAGC+AGG | + | chr5.4:4494404-4494423 | MS.gene019322:CDS | 50.0% |
| AAGAAGCAGGCTAAGCCAGC+TGG | + | chr5.4:4494417-4494436 | MS.gene019322:CDS | 55.0% | |
| ACAGGTTTCTGTCGGGTCAC+AGG | + | chr5.4:4496148-4496167 | MS.gene019322:intron | 55.0% | |
| AGGGGCCCACCAAGATTTGA+TGG | + | chr5.4:4494560-4494579 | MS.gene019322:intron | 55.0% | |
| GACACAAGGGAACCACACTG+TGG | - | chr5.4:4494931-4494950 | None:intergenic | 55.0% | |
| GACGCCTCCTCTCTCAATCT+AGG | - | chr5.4:4495746-4495765 | None:intergenic | 55.0% | |
| GGACCTGCTGGTGAATTTGG+AGG | + | chr5.4:4494632-4494651 | MS.gene019322:CDS | 55.0% | |
| GGTTGAACGTCGGATGCGTT+TGG | + | chr5.4:4495363-4495382 | MS.gene019322:intron | 55.0% | |
| GTGATCGGGTCGGATTTCCA+CGG | - | chr5.4:4496108-4496127 | None:intergenic | 55.0% | |
| TCTGTCGGGTCACAGGTTGT+TGG | + | chr5.4:4496155-4496174 | MS.gene019322:intron | 55.0% | |
| TGATCGGGTCGGATTTCCAC+GGG | - | chr5.4:4496107-4496126 | None:intergenic | 55.0% | |
| ! | TGTTTTTCACCCGTTGCCCG+TGG | + | chr5.4:4496088-4496107 | MS.gene019322:intron | 55.0% |
| !!! | GTTTTGGAGGGTCTCGGCTA+GGG | + | chr5.4:4495448-4495467 | MS.gene019322:intron | 55.0% |
| AAGCCAGCTGGAAGGCCCTT+CGG | + | chr5.4:4494429-4494448 | MS.gene019322:CDS | 60.0% | |
| ACACTATTGCAGGGCCCTGG+TGG | + | chr5.4:4496352-4496371 | MS.gene019322:intron | 60.0% | |
| AGCAGGCTAAGCCAGCTGGA+AGG | + | chr5.4:4494421-4494440 | MS.gene019322:CDS | 60.0% | |
| ATCACCAGGAGGACCACCGA+AGG | - | chr5.4:4494448-4494467 | None:intergenic | 60.0% | |
| CCTGGTGGTAGACCTGGCTT+CGG | + | chr5.4:4496367-4496386 | MS.gene019322:CDS | 60.0% | |
| CGAAGCCAGGTCTACCACCA+GGG | - | chr5.4:4496369-4496388 | None:intergenic | 60.0% | |
| CTGACACTATTGCAGGGCCC+TGG | + | chr5.4:4496349-4496368 | MS.gene019322:intron | 60.0% | |
| GACGTCCACAGTCCACAGTG+TGG | + | chr5.4:4494916-4494935 | MS.gene019322:intron | 60.0% | |
| GGCCTCCACGGTATCCATCA+CGG | - | chr5.4:4494607-4494626 | None:intergenic | 60.0% | |
| GGTCGGATTTCCACGGGCAA+CGG | - | chr5.4:4496101-4496120 | None:intergenic | 60.0% | |
| GTCGGATTTCCACGGGCAAC+GGG | - | chr5.4:4496100-4496119 | None:intergenic | 60.0% | |
| GTGGAGCTCCAGCTGACTAC+AGG | + | chr5.4:4494663-4494682 | MS.gene019322:CDS | 60.0% | |
| TACCTAGGGCGATCACCAGG+AGG | - | chr5.4:4494459-4494478 | None:intergenic | 60.0% | |
| TCACCAGGAGGACCACCGAA+GGG | - | chr5.4:4494447-4494466 | None:intergenic | 60.0% | |
| TTAGGCGATTCAGGGGGCCT+CGG | - | chr5.4:4495959-4495978 | None:intergenic | 60.0% | |
| ! | GGGAACCACACTGTGGACTG+TGG | - | chr5.4:4494924-4494943 | None:intergenic | 60.0% |
| !! | GACCGTGATGGATACCGTGG+AGG | + | chr5.4:4494602-4494621 | MS.gene019322:CDS | 60.0% |
| !! | GGTCGTGGTTCTGGTGGCTT+TGG | + | chr5.4:4496388-4496407 | MS.gene019322:CDS | 60.0% |
| !! | GGTGACCGTGATGGATACCG+TGG | + | chr5.4:4494599-4494618 | MS.gene019322:CDS | 60.0% |
| !!! | GGTTTTGGAGGGTCTCGGCT+AGG | + | chr5.4:4495447-4495466 | MS.gene019322:intron | 60.0% |
| CAGGTCCTCTTGGGCCTCCA+CGG | - | chr5.4:4494619-4494638 | None:intergenic | 65.0% | |
| CAGTATGTCACGGGCGGGTG+TGG | + | chr5.4:4495907-4495926 | MS.gene019322:intron | 65.0% | |
| CCAGAACCACGACCGAAGCC+AGG | - | chr5.4:4496382-4496401 | None:intergenic | 65.0% | |
| CCGAAGCCAGGTCTACCACC+AGG | - | chr5.4:4496370-4496389 | None:intergenic | 65.0% | |
| CCTGGCTTCGGTCGTGGTTC+TGG | + | chr5.4:4496379-4496398 | MS.gene019322:CDS | 65.0% | |
| GGATACCGTGGAGGCCCAAG+AGG | + | chr5.4:4494611-4494630 | MS.gene019322:CDS | 65.0% | |
| GGTAGACCTGGCTTCGGTCG+TGG | + | chr5.4:4496373-4496392 | MS.gene019322:CDS | 65.0% | |
| GTCCTCCTGGTGATCGCCCT+AGG | + | chr5.4:4494454-4494473 | MS.gene019322:CDS | 65.0% | |
| TGGAGGGTCTCGGCTAGGGT+GGG | + | chr5.4:4495452-4495471 | MS.gene019322:intron | 65.0% | |
| TTGGAGGGTCTCGGCTAGGG+TGG | + | chr5.4:4495451-4495470 | MS.gene019322:intron | 65.0% | |
| ! | TCGGCTAGGGTGGGTGGGTT+AGG | + | chr5.4:4495461-4495480 | MS.gene019322:intron | 65.0% |
| !! | GGCTTCGGTCGTGGTTCTGG+TGG | + | chr5.4:4496382-4496401 | MS.gene019322:CDS | 65.0% |
| AGGCCCTTCGGTGGTCCTCC+TGG | + | chr5.4:4494441-4494460 | MS.gene019322:CDS | 70.0% | |
| AGGGTCTCGGCTAGGGTGGG+TGG | + | chr5.4:4495455-4495474 | MS.gene019322:intron | 70.0% | |
| CAGGGCCCTGGTGGTAGACC+TGG | + | chr5.4:4496361-4496380 | MS.gene019322:intron | 70.0% | |
| CCACCGAAGGGCCTTCCAGC+TGG | - | chr5.4:4494435-4494454 | None:intergenic | 70.0% | |
| CCAGCTGGAAGGCCCTTCGG+TGG | + | chr5.4:4494432-4494451 | MS.gene019322:CDS | 70.0% | |
| GGAGGCCCAAGAGGACCTGC+TGG | + | chr5.4:4494620-4494639 | MS.gene019322:CDS | 70.0% | |
| GGGTCTCGGCTAGGGTGGGT+GGG | + | chr5.4:4495456-4495475 | MS.gene019322:intron | 70.0% | |
| ! | CGGGCGGGTGTGGCCACCGC+TGG | + | chr5.4:4495917-4495936 | MS.gene019322:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 4493960 | 4496438 | 4493960 | ID=MS.gene019322 |
| chr5.4 | mRNA | 4493960 | 4496438 | 4493960 | ID=MS.gene019322.t1;Parent=MS.gene019322 |
| chr5.4 | exon | 4493960 | 4493962 | 4493960 | ID=MS.gene019322.t1.exon1;Parent=MS.gene019322.t1 |
| chr5.4 | CDS | 4493960 | 4493962 | 4493960 | ID=cds.MS.gene019322.t1;Parent=MS.gene019322.t1 |
| chr5.4 | exon | 4494059 | 4494107 | 4494059 | ID=MS.gene019322.t1.exon2;Parent=MS.gene019322.t1 |
| chr5.4 | CDS | 4494059 | 4494107 | 4494059 | ID=cds.MS.gene019322.t1;Parent=MS.gene019322.t1 |
| chr5.4 | exon | 4494196 | 4494475 | 4494196 | ID=MS.gene019322.t1.exon3;Parent=MS.gene019322.t1 |
| chr5.4 | CDS | 4494196 | 4494475 | 4494196 | ID=cds.MS.gene019322.t1;Parent=MS.gene019322.t1 |
| chr5.4 | exon | 4494562 | 4494697 | 4494562 | ID=MS.gene019322.t1.exon4;Parent=MS.gene019322.t1 |
| chr5.4 | CDS | 4494562 | 4494697 | 4494562 | ID=cds.MS.gene019322.t1;Parent=MS.gene019322.t1 |
| chr5.4 | exon | 4496364 | 4496438 | 4496364 | ID=MS.gene019322.t1.exon5;Parent=MS.gene019322.t1 |
| chr5.4 | CDS | 4496364 | 4496438 | 4496364 | ID=cds.MS.gene019322.t1;Parent=MS.gene019322.t1 |
| Gene Sequence |
| Protein sequence |
