Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020342.t1 | XP_013449847.1 | 98.2 | 503 | 9 | 0 | 1 | 503 | 1 | 503 | 6.20E-281 | 976.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020342.t1 | A0A3Q7H216 | 52.0 | 504 | 202 | 9 | 4 | 499 | 3 | 474 | 2.3e-127 | 457.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020342.t1 | A0A072UDK3 | 98.2 | 503 | 9 | 0 | 1 | 503 | 1 | 503 | 4.5e-281 | 976.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene020342.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85967 | MS.gene020342 | PPI |
MS.gene020342 | MS.gene050661 | PPI |
MS.gene068358 | MS.gene020342 | PPI |
MS.gene020342 | MS.gene22710 | PPI |
MS.gene59522 | MS.gene020342 | PPI |
MS.gene025894 | MS.gene020342 | PPI |
MS.gene020342 | MS.gene024426 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020342.t1 | MTR_7g096350 | 98.211 | 503 | 9 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1029 |
MS.gene020342.t1 | MTR_7g117670 | 36.174 | 575 | 272 | 20 | 5 | 502 | 6 | 562 | 5.16e-86 | 276 |
MS.gene020342.t1 | MTR_8g027495 | 52.841 | 176 | 60 | 3 | 345 | 502 | 448 | 618 | 5.49e-47 | 172 |
MS.gene020342.t1 | MTR_8g027495 | 34.818 | 247 | 138 | 9 | 1 | 231 | 7 | 246 | 1.14e-31 | 129 |
MS.gene020342.t1 | MTR_8g024790 | 28.306 | 484 | 242 | 15 | 43 | 481 | 19 | 442 | 3.04e-42 | 157 |
MS.gene020342.t1 | MTR_5g030430 | 42.584 | 209 | 81 | 3 | 328 | 501 | 466 | 670 | 1.34e-39 | 152 |
MS.gene020342.t1 | MTR_5g030430 | 25.967 | 181 | 126 | 4 | 49 | 223 | 44 | 222 | 3.08e-11 | 66.2 |
MS.gene020342.t1 | MTR_8g024770 | 27.716 | 451 | 215 | 10 | 63 | 469 | 38 | 421 | 6.67e-38 | 144 |
MS.gene020342.t1 | MTR_8g067280 | 43.575 | 179 | 66 | 3 | 337 | 480 | 444 | 622 | 4.68e-37 | 145 |
MS.gene020342.t1 | MTR_8g067280 | 28.804 | 184 | 123 | 6 | 49 | 226 | 53 | 234 | 1.31e-12 | 70.5 |
MS.gene020342.t1 | MTR_4g092700 | 56.250 | 64 | 28 | 0 | 353 | 416 | 156 | 219 | 1.15e-16 | 81.6 |
MS.gene020342.t1 | MTR_5g014600 | 46.591 | 88 | 42 | 2 | 333 | 416 | 123 | 209 | 3.79e-16 | 80.1 |
MS.gene020342.t1 | MTR_1g072320 | 42.857 | 98 | 51 | 2 | 326 | 419 | 438 | 534 | 2.64e-14 | 75.9 |
MS.gene020342.t1 | MTR_1g112680 | 43.182 | 88 | 49 | 1 | 324 | 410 | 285 | 372 | 4.39e-14 | 75.1 |
MS.gene020342.t1 | MTR_4g097940 | 46.341 | 82 | 38 | 2 | 336 | 417 | 140 | 215 | 5.83e-14 | 73.6 |
MS.gene020342.t1 | MTR_4g067010 | 31.765 | 170 | 77 | 4 | 245 | 408 | 64 | 200 | 7.33e-14 | 73.2 |
MS.gene020342.t1 | MTR_2g038040 | 42.308 | 104 | 46 | 4 | 356 | 445 | 53 | 156 | 1.75e-13 | 70.5 |
MS.gene020342.t1 | MTR_4g097950 | 53.704 | 54 | 25 | 0 | 355 | 408 | 70 | 123 | 2.71e-13 | 70.1 |
MS.gene020342.t1 | MTR_2g010450 | 52.632 | 57 | 27 | 0 | 355 | 411 | 177 | 233 | 3.99e-13 | 71.2 |
MS.gene020342.t1 | MTR_5g030420 | 27.957 | 186 | 116 | 6 | 49 | 223 | 27 | 205 | 6.67e-13 | 68.9 |
MS.gene020342.t1 | MTR_5g030420 | 27.957 | 186 | 116 | 6 | 49 | 223 | 27 | 205 | 9.20e-13 | 68.9 |
MS.gene020342.t1 | MTR_4g066380 | 37.113 | 97 | 51 | 1 | 312 | 408 | 120 | 206 | 1.03e-12 | 69.7 |
MS.gene020342.t1 | MTR_4g097920 | 38.462 | 104 | 56 | 3 | 341 | 441 | 123 | 221 | 1.67e-12 | 68.9 |
MS.gene020342.t1 | MTR_4g097920 | 38.462 | 104 | 56 | 3 | 341 | 441 | 138 | 236 | 1.84e-12 | 68.9 |
MS.gene020342.t1 | MTR_3g498695 | 53.448 | 58 | 27 | 0 | 353 | 410 | 296 | 353 | 3.10e-12 | 68.9 |
MS.gene020342.t1 | MTR_3g498695 | 53.448 | 58 | 27 | 0 | 353 | 410 | 296 | 353 | 3.13e-12 | 68.9 |
MS.gene020342.t1 | MTR_8g064700 | 22.129 | 357 | 177 | 12 | 188 | 496 | 111 | 414 | 3.26e-12 | 68.9 |
MS.gene020342.t1 | MTR_5g014640 | 32.231 | 121 | 57 | 2 | 342 | 441 | 145 | 261 | 3.37e-12 | 68.2 |
MS.gene020342.t1 | MTR_0250s0040 | 40.625 | 96 | 51 | 3 | 313 | 408 | 52 | 141 | 4.42e-12 | 67.0 |
MS.gene020342.t1 | MTR_5g014520 | 43.836 | 73 | 39 | 1 | 338 | 410 | 142 | 212 | 4.43e-12 | 67.8 |
MS.gene020342.t1 | MTR_0246s0020 | 45.588 | 68 | 31 | 1 | 341 | 408 | 190 | 251 | 4.46e-12 | 68.2 |
MS.gene020342.t1 | MTR_0246s0020 | 45.588 | 68 | 31 | 1 | 341 | 408 | 190 | 251 | 4.52e-12 | 68.2 |
MS.gene020342.t1 | MTR_7g083900 | 51.724 | 58 | 28 | 0 | 353 | 410 | 284 | 341 | 6.03e-12 | 68.2 |
MS.gene020342.t1 | MTR_7g083900 | 51.724 | 58 | 28 | 0 | 353 | 410 | 284 | 341 | 6.10e-12 | 68.2 |
MS.gene020342.t1 | MTR_8g098275 | 50.820 | 61 | 30 | 0 | 351 | 411 | 240 | 300 | 7.22e-12 | 67.8 |
MS.gene020342.t1 | MTR_8g098275 | 50.820 | 61 | 30 | 0 | 351 | 411 | 304 | 364 | 7.75e-12 | 67.8 |
MS.gene020342.t1 | MTR_2g104550 | 35.652 | 115 | 66 | 4 | 308 | 418 | 90 | 200 | 8.56e-12 | 66.6 |
MS.gene020342.t1 | MTR_8g098275 | 50.820 | 61 | 30 | 0 | 351 | 411 | 397 | 457 | 9.13e-12 | 67.8 |
MS.gene020342.t1 | MTR_4g066460 | 30.488 | 164 | 95 | 3 | 245 | 408 | 64 | 208 | 9.73e-12 | 66.6 |
MS.gene020342.t1 | MTR_6g047550 | 51.852 | 54 | 26 | 0 | 355 | 408 | 173 | 226 | 1.12e-11 | 65.9 |
MS.gene020342.t1 | MTR_0246s0050 | 33.884 | 121 | 67 | 2 | 297 | 408 | 88 | 204 | 2.38e-11 | 65.5 |
MS.gene020342.t1 | MTR_4g098035 | 33.884 | 121 | 67 | 2 | 297 | 408 | 109 | 225 | 2.73e-11 | 65.5 |
MS.gene020342.t1 | MTR_2g104490 | 32.031 | 128 | 82 | 3 | 308 | 433 | 89 | 213 | 2.73e-11 | 65.1 |
MS.gene020342.t1 | MTR_0011s0260 | 51.852 | 54 | 26 | 0 | 355 | 408 | 183 | 236 | 3.15e-11 | 65.5 |
MS.gene020342.t1 | MTR_0011s0210 | 51.852 | 54 | 26 | 0 | 355 | 408 | 183 | 236 | 3.28e-11 | 65.5 |
MS.gene020342.t1 | MTR_2g104490 | 32.031 | 128 | 82 | 3 | 308 | 433 | 89 | 213 | 4.23e-11 | 64.7 |
MS.gene020342.t1 | MTR_5g014560 | 46.429 | 56 | 30 | 0 | 355 | 410 | 131 | 186 | 8.83e-11 | 63.5 |
MS.gene020342.t1 | MTR_4g057270 | 43.939 | 66 | 34 | 1 | 345 | 410 | 142 | 204 | 9.08e-11 | 63.5 |
MS.gene020342.t1 | MTR_2g084280 | 28.000 | 150 | 86 | 4 | 359 | 486 | 137 | 286 | 9.51e-11 | 63.5 |
MS.gene020342.t1 | MTR_3g030700 | 42.857 | 70 | 36 | 1 | 341 | 410 | 186 | 251 | 9.59e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020342.t1 | AT4G16430 | 47.628 | 506 | 219 | 11 | 3 | 502 | 2 | 467 | 1.49e-159 | 461 |
MS.gene020342.t1 | AT2G46510 | 35.000 | 560 | 272 | 14 | 9 | 500 | 9 | 544 | 3.40e-93 | 295 |
MS.gene020342.t1 | AT1G01260 | 52.096 | 167 | 72 | 3 | 338 | 502 | 416 | 576 | 1.20e-47 | 174 |
MS.gene020342.t1 | AT1G01260 | 36.803 | 269 | 137 | 8 | 5 | 245 | 5 | 268 | 2.99e-41 | 156 |
MS.gene020342.t1 | AT1G01260 | 52.096 | 167 | 72 | 3 | 338 | 502 | 416 | 576 | 1.20e-47 | 174 |
MS.gene020342.t1 | AT1G01260 | 36.803 | 269 | 137 | 8 | 5 | 245 | 5 | 268 | 2.99e-41 | 156 |
MS.gene020342.t1 | AT1G01260 | 52.096 | 167 | 72 | 3 | 338 | 502 | 416 | 576 | 1.20e-47 | 174 |
MS.gene020342.t1 | AT1G01260 | 36.803 | 269 | 137 | 8 | 5 | 245 | 5 | 268 | 2.99e-41 | 156 |
MS.gene020342.t1 | AT4G17880 | 27.843 | 510 | 286 | 13 | 49 | 481 | 62 | 566 | 4.72e-45 | 167 |
MS.gene020342.t1 | AT1G32640 | 42.105 | 190 | 81 | 2 | 336 | 500 | 433 | 618 | 9.78e-37 | 144 |
MS.gene020342.t1 | AT5G46760 | 40.816 | 196 | 88 | 1 | 336 | 503 | 396 | 591 | 4.05e-36 | 142 |
MS.gene020342.t1 | AT5G46830 | 28.364 | 483 | 290 | 15 | 41 | 481 | 23 | 491 | 5.11e-35 | 137 |
MS.gene020342.t1 | AT4G00870 | 37.059 | 170 | 73 | 5 | 333 | 468 | 220 | 389 | 1.78e-20 | 94.4 |
MS.gene020342.t1 | AT4G00480 | 24.742 | 388 | 245 | 13 | 50 | 409 | 23 | 391 | 3.76e-20 | 94.0 |
MS.gene020342.t1 | AT4G00480 | 24.742 | 388 | 245 | 13 | 50 | 409 | 23 | 391 | 4.24e-20 | 94.0 |
MS.gene020342.t1 | AT4G00480 | 24.742 | 388 | 245 | 13 | 50 | 409 | 23 | 391 | 4.38e-20 | 93.6 |
MS.gene020342.t1 | AT4G29930 | 27.419 | 186 | 111 | 3 | 327 | 493 | 31 | 211 | 2.19e-15 | 75.9 |
MS.gene020342.t1 | AT2G16910 | 27.881 | 269 | 147 | 9 | 195 | 422 | 121 | 383 | 2.55e-15 | 79.0 |
MS.gene020342.t1 | AT4G29930 | 26.776 | 183 | 113 | 4 | 327 | 493 | 31 | 208 | 5.96e-15 | 74.7 |
MS.gene020342.t1 | AT5G57150 | 46.512 | 86 | 33 | 1 | 325 | 410 | 37 | 109 | 7.96e-15 | 74.3 |
MS.gene020342.t1 | AT5G57150 | 46.512 | 86 | 33 | 1 | 325 | 410 | 38 | 110 | 9.04e-15 | 73.9 |
MS.gene020342.t1 | AT5G57150 | 46.512 | 86 | 33 | 1 | 325 | 410 | 38 | 110 | 9.85e-15 | 73.9 |
MS.gene020342.t1 | AT5G57150 | 46.512 | 86 | 33 | 1 | 325 | 410 | 37 | 109 | 1.45e-14 | 73.9 |
MS.gene020342.t1 | AT5G57150 | 46.512 | 86 | 33 | 1 | 325 | 410 | 38 | 110 | 1.77e-14 | 73.9 |
MS.gene020342.t1 | AT4G37850 | 49.333 | 75 | 38 | 0 | 337 | 411 | 134 | 208 | 2.63e-14 | 74.3 |
MS.gene020342.t1 | AT4G37850 | 49.333 | 75 | 38 | 0 | 337 | 411 | 134 | 208 | 2.63e-14 | 74.3 |
MS.gene020342.t1 | AT1G63650 | 47.761 | 67 | 35 | 0 | 351 | 417 | 401 | 467 | 5.87e-14 | 74.7 |
MS.gene020342.t1 | AT1G63650 | 26.961 | 204 | 126 | 4 | 42 | 229 | 9 | 205 | 2.76e-13 | 72.8 |
MS.gene020342.t1 | AT1G63650 | 47.761 | 67 | 35 | 0 | 351 | 417 | 401 | 467 | 5.87e-14 | 74.7 |
MS.gene020342.t1 | AT1G63650 | 26.961 | 204 | 126 | 4 | 42 | 229 | 9 | 205 | 2.76e-13 | 72.8 |
MS.gene020342.t1 | AT1G63650 | 47.761 | 67 | 35 | 0 | 351 | 417 | 401 | 467 | 5.87e-14 | 74.7 |
MS.gene020342.t1 | AT1G63650 | 26.961 | 204 | 126 | 4 | 42 | 229 | 9 | 205 | 2.76e-13 | 72.8 |
MS.gene020342.t1 | AT5G41315 | 25.446 | 224 | 125 | 6 | 42 | 238 | 15 | 223 | 1.20e-13 | 73.9 |
MS.gene020342.t1 | AT5G41315 | 39.130 | 69 | 42 | 0 | 349 | 417 | 440 | 508 | 1.59e-11 | 67.4 |
MS.gene020342.t1 | AT5G41315 | 25.446 | 224 | 125 | 6 | 42 | 238 | 10 | 218 | 1.23e-13 | 73.9 |
MS.gene020342.t1 | AT5G41315 | 39.130 | 69 | 42 | 0 | 349 | 417 | 435 | 503 | 1.53e-11 | 67.4 |
MS.gene020342.t1 | AT5G41315 | 25.446 | 224 | 125 | 6 | 42 | 238 | 18 | 226 | 1.32e-13 | 73.9 |
MS.gene020342.t1 | AT5G41315 | 39.130 | 69 | 42 | 0 | 349 | 417 | 443 | 511 | 1.61e-11 | 67.4 |
MS.gene020342.t1 | AT4G09820 | 27.108 | 166 | 106 | 2 | 335 | 496 | 354 | 508 | 2.01e-13 | 73.2 |
MS.gene020342.t1 | AT4G29930 | 38.835 | 103 | 56 | 2 | 327 | 427 | 31 | 128 | 2.05e-13 | 70.9 |
MS.gene020342.t1 | AT4G29930 | 38.835 | 103 | 56 | 2 | 327 | 427 | 31 | 128 | 2.05e-13 | 70.9 |
MS.gene020342.t1 | AT4G29930 | 26.901 | 171 | 104 | 4 | 327 | 481 | 31 | 196 | 2.29e-13 | 70.1 |
MS.gene020342.t1 | AT4G29930 | 38.835 | 103 | 56 | 2 | 327 | 427 | 31 | 128 | 2.42e-13 | 70.5 |
MS.gene020342.t1 | AT4G29930 | 38.835 | 103 | 56 | 2 | 327 | 427 | 31 | 128 | 2.52e-13 | 68.9 |
MS.gene020342.t1 | AT2G22750 | 51.562 | 64 | 31 | 0 | 341 | 404 | 112 | 175 | 3.94e-13 | 70.5 |
MS.gene020342.t1 | AT2G22750 | 51.562 | 64 | 31 | 0 | 341 | 404 | 140 | 203 | 4.15e-13 | 70.9 |
MS.gene020342.t1 | AT2G22750 | 51.562 | 64 | 31 | 0 | 341 | 404 | 140 | 203 | 4.16e-13 | 70.9 |
MS.gene020342.t1 | AT2G22750 | 51.562 | 64 | 31 | 0 | 341 | 404 | 112 | 175 | 4.17e-13 | 70.5 |
MS.gene020342.t1 | AT2G22750 | 51.562 | 64 | 31 | 0 | 341 | 404 | 136 | 199 | 4.25e-13 | 70.9 |
MS.gene020342.t1 | AT1G12860 | 55.172 | 58 | 26 | 0 | 353 | 410 | 265 | 322 | 5.67e-13 | 71.2 |
MS.gene020342.t1 | AT1G12860 | 55.172 | 58 | 26 | 0 | 353 | 410 | 265 | 322 | 6.43e-13 | 71.2 |
MS.gene020342.t1 | AT2G22770 | 44.872 | 78 | 40 | 1 | 349 | 423 | 123 | 200 | 1.22e-12 | 69.3 |
MS.gene020342.t1 | AT3G26744 | 53.448 | 58 | 27 | 0 | 353 | 410 | 305 | 362 | 2.40e-12 | 69.7 |
MS.gene020342.t1 | AT3G26744 | 53.448 | 58 | 27 | 0 | 353 | 410 | 305 | 362 | 2.40e-12 | 69.7 |
MS.gene020342.t1 | AT3G26744 | 53.448 | 58 | 27 | 0 | 353 | 410 | 305 | 362 | 2.40e-12 | 69.7 |
MS.gene020342.t1 | AT3G26744 | 53.448 | 58 | 27 | 0 | 353 | 410 | 305 | 362 | 2.40e-12 | 69.3 |
MS.gene020342.t1 | AT5G10570 | 36.220 | 127 | 70 | 3 | 299 | 416 | 89 | 213 | 6.72e-11 | 63.9 |
Find 123 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGATATCCACCCGGTTTC+TGG | 0.132043 | 7.2:-13817174 | MS.gene020342:CDS |
ATGGACAAGGCTTCTCTTCT+TGG | 0.203486 | 7.2:-13817351 | MS.gene020342:CDS |
CCAGAATCATCTTCCACTTT+TGG | 0.206725 | 7.2:+13817720 | None:intergenic |
TGAGAATATTTATAAGAAAT+TGG | 0.206945 | 7.2:-13818129 | MS.gene020342:CDS |
TGTTCCTAACATTTCTAAAA+TGG | 0.208602 | 7.2:-13817370 | MS.gene020342:CDS |
GTATGAATCAAGGTCGTTTC+TGG | 0.223638 | 7.2:-13817967 | MS.gene020342:CDS |
TGATGTTAGGAGGAAGGTTT+TGG | 0.250788 | 7.2:-13818189 | MS.gene020342:CDS |
CCATAAGCTTGATCTTCTTC+TGG | 0.258919 | 7.2:+13817301 | None:intergenic |
AGAGTTTCTTCTATTGATTT+AGG | 0.261536 | 7.2:-13817549 | MS.gene020342:CDS |
TGGGGAAGATTCATGGTTGC+TGG | 0.279240 | 7.2:-13818169 | MS.gene020342:CDS |
TCCCTTTCCTGCTCATTCCT+TGG | 0.291476 | 7.2:+13818218 | None:intergenic |
ACCTCTGTCTATTATGTGTT+TGG | 0.301401 | 7.2:-13818074 | MS.gene020342:CDS |
CCAAAAGTGGAAGATGATTC+TGG | 0.302301 | 7.2:-13817720 | MS.gene020342:CDS |
TCTTCTGGAGATCAGTGATA+TGG | 0.305181 | 7.2:+13817316 | None:intergenic |
CCAGAAGAAGATCAAGCTTA+TGG | 0.312383 | 7.2:-13817301 | MS.gene020342:CDS |
GATATGGTCAGGGCAACTTT+TGG | 0.330665 | 7.2:-13817843 | MS.gene020342:CDS |
GGGGAAGATTCATGGTTGCT+GGG | 0.377703 | 7.2:-13818168 | MS.gene020342:CDS |
TAAGAAATTGGACAGTGTTT+CGG | 0.382697 | 7.2:-13818117 | MS.gene020342:CDS |
CAGTTGGGTCAAATGATTCC+TGG | 0.383826 | 7.2:-13817591 | MS.gene020342:CDS |
CAGGTTGCCGGTTTGAAATC+CGG | 0.384873 | 7.2:-13818293 | MS.gene020342:CDS |
AAAGGGAGAAAGATGATGTT+AGG | 0.390427 | 7.2:-13818202 | MS.gene020342:CDS |
TGGATAGTCACGTCAAGATT+CGG | 0.396746 | 7.2:+13818371 | None:intergenic |
ATGTATGAATTACTTTATCC+TGG | 0.397717 | 7.2:+13817091 | None:intergenic |
GTTAGGAACAACAGCTCTTA+AGG | 0.401789 | 7.2:+13817383 | None:intergenic |
GCACACTTAAAAGAATTTCC+AGG | 0.410186 | 7.2:+13818032 | None:intergenic |
ACTTTAACAATTCCAGAAAC+CGG | 0.412032 | 7.2:+13817162 | None:intergenic |
CTTGGCGCAAACCATGCTTA+TGG | 0.414623 | 7.2:-13817666 | MS.gene020342:CDS |
AAGATTCATGGTTGCTGGGG+TGG | 0.418070 | 7.2:-13818164 | MS.gene020342:CDS |
TTTGGGCACGAGTTAAGCTT+GGG | 0.421749 | 7.2:-13817780 | MS.gene020342:CDS |
CTCTTAAGGCGTAAAATCTC+TGG | 0.435497 | 7.2:+13817397 | None:intergenic |
GGTTCCTCTCGTCCATTGGC+AGG | 0.435606 | 7.2:+13817465 | None:intergenic |
CTTATGGTAATTCTTCCAAC+GGG | 0.438633 | 7.2:-13817650 | MS.gene020342:CDS |
CAGTGGTTCCTCTCGTCCAT+TGG | 0.439512 | 7.2:+13817461 | None:intergenic |
AAGGTCGTTTCTGGCTAAAT+CGG | 0.439840 | 7.2:-13817958 | MS.gene020342:CDS |
AGGTTGTGTCACATTGTTAA+CGG | 0.439902 | 7.2:-13818344 | MS.gene020342:CDS |
GAAAGATGATGTTAGGAGGA+AGG | 0.440512 | 7.2:-13818195 | MS.gene020342:CDS |
TATCTTGCAATGGCAATTGC+TGG | 0.440816 | 7.2:+13817247 | None:intergenic |
TTTAATTCTCAGTATGGTCC+TGG | 0.444163 | 7.2:-13818050 | MS.gene020342:CDS |
GAAGACTCCTCCTCACCTCT+TGG | 0.464557 | 7.2:-13817522 | MS.gene020342:CDS |
TGAAGAAGACAAGGCTATGT+TGG | 0.466385 | 7.2:-13818474 | MS.gene020342:CDS |
TATTAGTTTCTCCCCAAAAG+TGG | 0.469095 | 7.2:-13817733 | MS.gene020342:CDS |
TTCCCCTCCTTGAGTTCTGA+TGG | 0.471316 | 7.2:+13817065 | None:intergenic |
TCTATAACCCCGGCTTTAAG+AGG | 0.476638 | 7.2:+13817909 | None:intergenic |
ATCTACCTCTGGACAGGCTA+AGG | 0.484847 | 7.2:-13817817 | MS.gene020342:CDS |
ATACGGTGAGGGACACTGTC+AGG | 0.487755 | 7.2:-13818255 | MS.gene020342:CDS |
GGCCAATGTTTCAACTTCCC+AGG | 0.496533 | 7.2:-13817109 | MS.gene020342:CDS |
CCAAGTTGGTCTTCTGATGC+TGG | 0.500304 | 7.2:-13818005 | MS.gene020342:CDS |
CTTCTGGAGATCAGTGATAT+GGG | 0.500322 | 7.2:+13817317 | None:intergenic |
GTCCAAGGAATGAGCAGGAA+AGG | 0.501601 | 7.2:-13818220 | MS.gene020342:CDS |
TCGTTTCTGGCTAAATCGGC+TGG | 0.502083 | 7.2:-13817954 | MS.gene020342:CDS |
GGCTATGTTGGAATCTGTGT+TGG | 0.505854 | 7.2:-13818462 | MS.gene020342:CDS |
GTTTAAATCAGTATGAATCA+AGG | 0.505969 | 7.2:-13817977 | MS.gene020342:CDS |
AAAGCCGGGGTTATAGAGCT+TGG | 0.507196 | 7.2:-13817903 | MS.gene020342:CDS |
TGGAGAATCTACCTCTGGAC+AGG | 0.507498 | 7.2:-13817823 | MS.gene020342:CDS |
TGTTAGAGTTAGCTGCCCCT+TGG | 0.517530 | 7.2:-13817193 | MS.gene020342:CDS |
TCCAAGGAATGAGCAGGAAA+GGG | 0.524680 | 7.2:-13818219 | MS.gene020342:CDS |
GACACTGTCAGGATCCCAAA+GGG | 0.526579 | 7.2:-13818244 | MS.gene020342:CDS |
ATCCTGGGAAGTTGAAACAT+TGG | 0.527219 | 7.2:+13817107 | None:intergenic |
CTGCCCCTTGGATATCCACC+CGG | 0.528394 | 7.2:-13817181 | MS.gene020342:CDS |
TTGACGTGACTATCCACAAA+AGG | 0.529097 | 7.2:-13818364 | MS.gene020342:CDS |
GGTTATAGAGCTTGGTTCGA+CGG | 0.532928 | 7.2:-13817895 | MS.gene020342:CDS |
AGAGCTTGGTTCGACGGAGA+TGG | 0.536663 | 7.2:-13817889 | MS.gene020342:CDS |
AGAGAAAGATGGCTGGTGAG+AGG | 0.545343 | 7.2:-13818508 | None:intergenic |
TTAAGTGTGCTAAACCAAGT+TGG | 0.545549 | 7.2:-13818019 | MS.gene020342:CDS |
GGGAAGATTCATGGTTGCTG+GGG | 0.546890 | 7.2:-13818167 | MS.gene020342:CDS |
CAAAATCGCGTAATTCCACT+TGG | 0.547674 | 7.2:+13818319 | None:intergenic |
TGTATGAATTACTTTATCCT+GGG | 0.549481 | 7.2:+13817092 | None:intergenic |
ATAGCCACCGGATTTCAAAC+CGG | 0.550635 | 7.2:+13818286 | None:intergenic |
GCCTGAGAAGTAAAATTCCC+AGG | 0.550809 | 7.2:+13817573 | None:intergenic |
GCATCAAATTGTAGCTCAAG+AGG | 0.553064 | 7.2:-13817130 | MS.gene020342:CDS |
TTGAAGCGGAGAGGCAAAGA+CGG | 0.553502 | 7.2:-13817431 | MS.gene020342:CDS |
GCTTATGGTAATTCTTCCAA+CGG | 0.554315 | 7.2:-13817651 | MS.gene020342:CDS |
CCAGCATCAGAAGACCAACT+TGG | 0.555302 | 7.2:+13818005 | None:intergenic |
AGTTGGGTCAAATGATTCCT+GGG | 0.557673 | 7.2:-13817590 | MS.gene020342:CDS |
TGGAAGAATTACCATAAGCA+TGG | 0.563019 | 7.2:+13817655 | None:intergenic |
ACATTCTCCATCAGAACTCA+AGG | 0.569500 | 7.2:-13817072 | MS.gene020342:CDS |
CTTTAACAATTCCAGAAACC+GGG | 0.569555 | 7.2:+13817163 | None:intergenic |
GGGAGAAAGATGATGTTAGG+AGG | 0.569685 | 7.2:-13818199 | MS.gene020342:CDS |
TCCGCTTCAACATGATTCAG+TGG | 0.571772 | 7.2:+13817444 | None:intergenic |
TGAAGCGGAGAGGCAAAGAC+GGG | 0.572704 | 7.2:-13817430 | MS.gene020342:CDS |
GGTGGCTATGTGTTGAAATA+CGG | 0.578846 | 7.2:-13818272 | MS.gene020342:CDS |
AGAAACCGGGTGGATATCCA+AGG | 0.585451 | 7.2:+13817176 | None:intergenic |
TCTTACGAAGTACAAGCGCT+TGG | 0.588221 | 7.2:-13817684 | MS.gene020342:CDS |
TGGGCACGAGTTAAGCTTGG+GGG | 0.592030 | 7.2:-13817778 | MS.gene020342:CDS |
TGAAAATCAATATCTTGCAA+TGG | 0.592942 | 7.2:+13817237 | None:intergenic |
CTCCATCAGAACTCAAGGAG+GGG | 0.593410 | 7.2:-13817067 | MS.gene020342:CDS |
GTATAGTAGAGAAAGATGGC+TGG | 0.593720 | 7.2:-13818515 | None:intergenic |
TAACATTTCTAAAATGGACA+AGG | 0.599447 | 7.2:-13817364 | MS.gene020342:CDS |
CTCGTCTCCAAGAGGTGAGG+AGG | 0.602197 | 7.2:+13817515 | None:intergenic |
AGAGGGAGAAAACCTGCCAA+TGG | 0.605353 | 7.2:-13817477 | MS.gene020342:CDS |
ACCACTGAATCATGTTGAAG+CGG | 0.606334 | 7.2:-13817445 | MS.gene020342:CDS |
GTATTTCAACACATAGCCAC+CGG | 0.614051 | 7.2:+13818274 | None:intergenic |
GCTATGTTGGAATCTGTGTT+GGG | 0.620643 | 7.2:-13818461 | MS.gene020342:CDS |
GGACACTGTCAGGATCCCAA+AGG | 0.622420 | 7.2:-13818245 | MS.gene020342:CDS |
TCTCCATCAGAACTCAAGGA+GGG | 0.623115 | 7.2:-13817068 | MS.gene020342:CDS |
CACTGTCAGGATCCCAAAGG+GGG | 0.625514 | 7.2:-13818242 | MS.gene020342:CDS |
TTGTAAGAATGAAGAAGACA+AGG | 0.629373 | 7.2:-13818483 | MS.gene020342:CDS |
GAATCATTTGACCCAACTGA+GGG | 0.642194 | 7.2:+13817595 | None:intergenic |
CCGCTCGTCTCCAAGAGGTG+AGG | 0.645733 | 7.2:+13817512 | None:intergenic |
CCTCACCTCTTGGAGACGAG+CGG | 0.646158 | 7.2:-13817512 | MS.gene020342:CDS |
TATGGTAATTCTTCCAACGG+GGG | 0.650209 | 7.2:-13817648 | MS.gene020342:CDS |
TGCTACCTTAGCCTGTCCAG+AGG | 0.651503 | 7.2:+13817812 | None:intergenic |
TTCTCCATCAGAACTCAAGG+AGG | 0.654759 | 7.2:-13817069 | MS.gene020342:CDS |
AAAACCTGCCAATGGACGAG+AGG | 0.654921 | 7.2:-13817469 | MS.gene020342:CDS |
GAAACCGGGTGGATATCCAA+GGG | 0.657964 | 7.2:+13817177 | None:intergenic |
TGAATCATGTTGAAGCGGAG+AGG | 0.659736 | 7.2:-13817440 | MS.gene020342:CDS |
GGAATCATTTGACCCAACTG+AGG | 0.660288 | 7.2:+13817594 | None:intergenic |
GGCTTCCGCTCGTCTCCAAG+AGG | 0.660984 | 7.2:+13817507 | None:intergenic |
GTTGCCGGTTTGAAATCCGG+TGG | 0.661652 | 7.2:-13818290 | MS.gene020342:CDS |
TTGGGCACGAGTTAAGCTTG+GGG | 0.666411 | 7.2:-13817779 | MS.gene020342:CDS |
ACATTGTTAACGGTTCCAAG+TGG | 0.669178 | 7.2:-13818334 | MS.gene020342:CDS |
CGAACCAAGCTCTATAACCC+CGG | 0.673641 | 7.2:+13817899 | None:intergenic |
GAGATGGTGCCTGAAGAGCA+AGG | 0.686748 | 7.2:-13817873 | MS.gene020342:CDS |
ACACTGTCAGGATCCCAAAG+GGG | 0.690461 | 7.2:-13818243 | MS.gene020342:CDS |
TAACAATTCCAGAAACCGGG+TGG | 0.692180 | 7.2:+13817166 | None:intergenic |
ACCAAACACATAATAGACAG+AGG | 0.698940 | 7.2:+13818073 | None:intergenic |
ATTCGGCGGAACAATAACAT+CGG | 0.702866 | 7.2:+13818388 | None:intergenic |
TATGTGTTGAAATACGGTGA+GGG | 0.713229 | 7.2:-13818266 | MS.gene020342:CDS |
TTATGGTAATTCTTCCAACG+GGG | 0.725236 | 7.2:-13817649 | MS.gene020342:CDS |
ATAGTCACGTCAAGATTCGG+CGG | 0.725406 | 7.2:+13818374 | None:intergenic |
AAACCGGGTGGATATCCAAG+GGG | 0.728834 | 7.2:+13817178 | None:intergenic |
CTATGTGTTGAAATACGGTG+AGG | 0.742411 | 7.2:-13818267 | MS.gene020342:CDS |
GGGTGTAGGAGACAGCAACG+AGG | 0.803375 | 7.2:-13817628 | MS.gene020342:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAGAATATTTATAAGAAAT+TGG | - | chr7.2:13817382-13817401 | MS.gene020342:CDS | 15.0% |
! | ATGTATGAATTACTTTATCC+TGG | + | chr7.2:13818423-13818442 | None:intergenic | 25.0% |
! | GTTTAAATCAGTATGAATCA+AGG | - | chr7.2:13817534-13817553 | MS.gene020342:CDS | 25.0% |
! | TATGGAAACTGAAAAAAACA+TGG | - | chr7.2:13818228-13818247 | MS.gene020342:CDS | 25.0% |
! | TGAAAATCAATATCTTGCAA+TGG | + | chr7.2:13818277-13818296 | None:intergenic | 25.0% |
! | TGTATGAATTACTTTATCCT+GGG | + | chr7.2:13818422-13818441 | None:intergenic | 25.0% |
!! | TGTTCCTAACATTTCTAAAA+TGG | - | chr7.2:13818141-13818160 | MS.gene020342:CDS | 25.0% |
!!! | AGAGTTTCTTCTATTGATTT+AGG | - | chr7.2:13817962-13817981 | MS.gene020342:CDS | 25.0% |
!!! | ATTGCAAGATATTGATTTTC+AGG | - | chr7.2:13818276-13818295 | MS.gene020342:CDS | 25.0% |
!!! | TAACATTTCTAAAATGGACA+AGG | - | chr7.2:13818147-13818166 | MS.gene020342:CDS | 25.0% |
!!! | TTGTCCATTTTAGAAATGTT+AGG | + | chr7.2:13818148-13818167 | None:intergenic | 25.0% |
!!! | TTTGGTTTTAATTCTCAGTA+TGG | - | chr7.2:13817455-13817474 | MS.gene020342:CDS | 25.0% |
AAAAAACATGGCTGACAATA+AGG | - | chr7.2:13818240-13818259 | MS.gene020342:CDS | 30.0% | |
AAAAACATGGCTGACAATAA+GGG | - | chr7.2:13818241-13818260 | MS.gene020342:CDS | 30.0% | |
ACTTTAACAATTCCAGAAAC+CGG | + | chr7.2:13818352-13818371 | None:intergenic | 30.0% | |
TAAGAAATTGGACAGTGTTT+CGG | - | chr7.2:13817394-13817413 | MS.gene020342:CDS | 30.0% | |
TTGTAAGAATGAAGAAGACA+AGG | - | chr7.2:13817028-13817047 | MS.gene020342:CDS | 30.0% | |
AAAGGGAGAAAGATGATGTT+AGG | - | chr7.2:13817309-13817328 | MS.gene020342:CDS | 35.0% | |
ACCAAACACATAATAGACAG+AGG | + | chr7.2:13817441-13817460 | None:intergenic | 35.0% | |
ACCTCTGTCTATTATGTGTT+TGG | - | chr7.2:13817437-13817456 | MS.gene020342:CDS | 35.0% | |
AGGTTGTGTCACATTGTTAA+CGG | - | chr7.2:13817167-13817186 | MS.gene020342:CDS | 35.0% | |
CTTATGGTAATTCTTCCAAC+GGG | - | chr7.2:13817861-13817880 | MS.gene020342:CDS | 35.0% | |
CTTTAACAATTCCAGAAACC+GGG | + | chr7.2:13818351-13818370 | None:intergenic | 35.0% | |
GCACACTTAAAAGAATTTCC+AGG | + | chr7.2:13817482-13817501 | None:intergenic | 35.0% | |
GCTTATGGTAATTCTTCCAA+CGG | - | chr7.2:13817860-13817879 | MS.gene020342:CDS | 35.0% | |
TATGTGTTGAAATACGGTGA+GGG | - | chr7.2:13817245-13817264 | MS.gene020342:CDS | 35.0% | |
TGGAAGAATTACCATAAGCA+TGG | + | chr7.2:13817859-13817878 | None:intergenic | 35.0% | |
TTAAGTGTGCTAAACCAAGT+TGG | - | chr7.2:13817492-13817511 | MS.gene020342:CDS | 35.0% | |
TTATGGTAATTCTTCCAACG+GGG | - | chr7.2:13817862-13817881 | MS.gene020342:CDS | 35.0% | |
TTTAATTCTCAGTATGGTCC+TGG | - | chr7.2:13817461-13817480 | MS.gene020342:CDS | 35.0% | |
! | AAGGTAGCACCAAAGATTTT+TGG | - | chr7.2:13817713-13817732 | MS.gene020342:CDS | 35.0% |
! | AGGTAGCACCAAAGATTTTT+GGG | - | chr7.2:13817714-13817733 | MS.gene020342:CDS | 35.0% |
! | TATTAGTTTCTCCCCAAAAG+TGG | - | chr7.2:13817778-13817797 | MS.gene020342:CDS | 35.0% |
!! | AGAATCATCTTCCACTTTTG+GGG | + | chr7.2:13817792-13817811 | None:intergenic | 35.0% |
!! | CAGAATCATCTTCCACTTTT+GGG | + | chr7.2:13817793-13817812 | None:intergenic | 35.0% |
!!! | AAGGTTTTTTGGATATGGTC+AGG | - | chr7.2:13817657-13817676 | MS.gene020342:CDS | 35.0% |
!!! | AGAGCAAGGTTTTTTGGATA+TGG | - | chr7.2:13817652-13817671 | MS.gene020342:CDS | 35.0% |
!!! | AGGTTTTTTGGATATGGTCA+GGG | - | chr7.2:13817658-13817677 | MS.gene020342:CDS | 35.0% |
AACTCGTGCCCAAAAATCTT+TGG | + | chr7.2:13817725-13817744 | None:intergenic | 40.0% | |
ACATTCTCCATCAGAACTCA+AGG | - | chr7.2:13818439-13818458 | MS.gene020342:CDS | 40.0% | |
ACATTGTTAACGGTTCCAAG+TGG | - | chr7.2:13817177-13817196 | MS.gene020342:CDS | 40.0% | |
ACCACTGAATCATGTTGAAG+CGG | - | chr7.2:13818066-13818085 | MS.gene020342:CDS | 40.0% | |
AGTTGGGTCAAATGATTCCT+GGG | - | chr7.2:13817921-13817940 | MS.gene020342:CDS | 40.0% | |
ATCCTGGGAAGTTGAAACAT+TGG | + | chr7.2:13818407-13818426 | None:intergenic | 40.0% | |
ATTCGGCGGAACAATAACAT+CGG | + | chr7.2:13817126-13817145 | None:intergenic | 40.0% | |
CAAAATCGCGTAATTCCACT+TGG | + | chr7.2:13817195-13817214 | None:intergenic | 40.0% | |
CCAAAAGTGGAAGATGATTC+TGG | - | chr7.2:13817791-13817810 | MS.gene020342:CDS | 40.0% | |
CCAGAAGAAGATCAAGCTTA+TGG | - | chr7.2:13818210-13818229 | MS.gene020342:CDS | 40.0% | |
CCATAAGCTTGATCTTCTTC+TGG | + | chr7.2:13818213-13818232 | None:intergenic | 40.0% | |
CTATGTGTTGAAATACGGTG+AGG | - | chr7.2:13817244-13817263 | MS.gene020342:CDS | 40.0% | |
CTCTTAAGGCGTAAAATCTC+TGG | + | chr7.2:13818117-13818136 | None:intergenic | 40.0% | |
GAAAGATGATGTTAGGAGGA+AGG | - | chr7.2:13817316-13817335 | MS.gene020342:CDS | 40.0% | |
GAATCATTTGACCCAACTGA+GGG | + | chr7.2:13817919-13817938 | None:intergenic | 40.0% | |
GCATCAAATTGTAGCTCAAG+AGG | - | chr7.2:13818381-13818400 | MS.gene020342:CDS | 40.0% | |
GCTATGTTGGAATCTGTGTT+GGG | - | chr7.2:13817050-13817069 | MS.gene020342:CDS | 40.0% | |
GGTGGCTATGTGTTGAAATA+CGG | - | chr7.2:13817239-13817258 | MS.gene020342:CDS | 40.0% | |
GTATGAATCAAGGTCGTTTC+TGG | - | chr7.2:13817544-13817563 | MS.gene020342:CDS | 40.0% | |
GTATTTCAACACATAGCCAC+CGG | + | chr7.2:13817240-13817259 | None:intergenic | 40.0% | |
GTTAGGAACAACAGCTCTTA+AGG | + | chr7.2:13818131-13818150 | None:intergenic | 40.0% | |
TATCTTGCAATGGCAATTGC+TGG | + | chr7.2:13818267-13818286 | None:intergenic | 40.0% | |
TATGGTAATTCTTCCAACGG+GGG | - | chr7.2:13817863-13817882 | MS.gene020342:CDS | 40.0% | |
TCCAAAAAACCTTGCTCTTC+AGG | + | chr7.2:13817650-13817669 | None:intergenic | 40.0% | |
TGAAGAAGACAAGGCTATGT+TGG | - | chr7.2:13817037-13817056 | MS.gene020342:CDS | 40.0% | |
TGGATAGTCACGTCAAGATT+CGG | + | chr7.2:13817143-13817162 | None:intergenic | 40.0% | |
TTGACGTGACTATCCACAAA+AGG | - | chr7.2:13817147-13817166 | MS.gene020342:CDS | 40.0% | |
! | AGTGGAATTACGCGATTTTG+TGG | - | chr7.2:13817195-13817214 | MS.gene020342:CDS | 40.0% |
! | ATGTTAGGAGGAAGGTTTTG+GGG | - | chr7.2:13817324-13817343 | MS.gene020342:CDS | 40.0% |
! | CAATGTGACACAACCTTTTG+TGG | + | chr7.2:13817163-13817182 | None:intergenic | 40.0% |
! | CCAGAATCATCTTCCACTTT+TGG | + | chr7.2:13817794-13817813 | None:intergenic | 40.0% |
! | CTTCTGGAGATCAGTGATAT+GGG | + | chr7.2:13818197-13818216 | None:intergenic | 40.0% |
! | CTTTTGTACCTCTTAAAGCC+GGG | - | chr7.2:13817594-13817613 | MS.gene020342:CDS | 40.0% |
! | GATGTTAGGAGGAAGGTTTT+GGG | - | chr7.2:13817323-13817342 | MS.gene020342:CDS | 40.0% |
! | GCTTTTGTACCTCTTAAAGC+CGG | - | chr7.2:13817593-13817612 | MS.gene020342:CDS | 40.0% |
! | GGTTTTCTCCCTCTTTTTCT+AGG | + | chr7.2:13818028-13818047 | None:intergenic | 40.0% |
! | TCCTGGGAATTTTACTTCTC+AGG | - | chr7.2:13817937-13817956 | MS.gene020342:CDS | 40.0% |
! | TCTTCTGGAGATCAGTGATA+TGG | + | chr7.2:13818198-13818217 | None:intergenic | 40.0% |
! | TGATGTTAGGAGGAAGGTTT+TGG | - | chr7.2:13817322-13817341 | MS.gene020342:CDS | 40.0% |
! | TTTTGTACCTCTTAAAGCCG+GGG | - | chr7.2:13817595-13817614 | MS.gene020342:CDS | 40.0% |
!! | AAGGTCGTTTCTGGCTAAAT+CGG | - | chr7.2:13817553-13817572 | MS.gene020342:CDS | 40.0% |
!! | ACTTTTGGAGAATCTACCTC+TGG | - | chr7.2:13817683-13817702 | MS.gene020342:CDS | 40.0% |
!! | GCAAAAAAGTACCCTCAGTT+GGG | - | chr7.2:13817905-13817924 | MS.gene020342:CDS | 40.0% |
!!! | AAGGTTTTGGGGAAGATTCA+TGG | - | chr7.2:13817335-13817354 | MS.gene020342:CDS | 40.0% |
!!! | TATTGATTTTCAGGCTCGAC+AGG | - | chr7.2:13818285-13818304 | MS.gene020342:CDS | 40.0% |
AGCGGAAGCCTAGAAAAAGA+GGG | - | chr7.2:13818017-13818036 | MS.gene020342:CDS | 45.0% | |
ATAGCCACCGGATTTCAAAC+CGG | + | chr7.2:13817228-13817247 | None:intergenic | 45.0% | |
ATAGTCACGTCAAGATTCGG+CGG | + | chr7.2:13817140-13817159 | None:intergenic | 45.0% | |
ATGGACAAGGCTTCTCTTCT+TGG | - | chr7.2:13818160-13818179 | MS.gene020342:CDS | 45.0% | |
CAGTTGGGTCAAATGATTCC+TGG | - | chr7.2:13817920-13817939 | MS.gene020342:CDS | 45.0% | |
GCCTGAGAAGTAAAATTCCC+AGG | + | chr7.2:13817941-13817960 | None:intergenic | 45.0% | |
GGAATCATTTGACCCAACTG+AGG | + | chr7.2:13817920-13817939 | None:intergenic | 45.0% | |
GGCTATGTTGGAATCTGTGT+TGG | - | chr7.2:13817049-13817068 | MS.gene020342:CDS | 45.0% | |
GGGAGAAAGATGATGTTAGG+AGG | - | chr7.2:13817312-13817331 | MS.gene020342:CDS | 45.0% | |
TAACAATTCCAGAAACCGGG+TGG | + | chr7.2:13818348-13818367 | None:intergenic | 45.0% | |
TCCAAGGAATGAGCAGGAAA+GGG | - | chr7.2:13817292-13817311 | MS.gene020342:CDS | 45.0% | |
TCCGCTTCAACATGATTCAG+TGG | + | chr7.2:13818070-13818089 | None:intergenic | 45.0% | |
TCTCCATCAGAACTCAAGGA+GGG | - | chr7.2:13818443-13818462 | MS.gene020342:CDS | 45.0% | |
TCTTACGAAGTACAAGCGCT+TGG | - | chr7.2:13817827-13817846 | MS.gene020342:CDS | 45.0% | |
TGAATCATGTTGAAGCGGAG+AGG | - | chr7.2:13818071-13818090 | MS.gene020342:CDS | 45.0% | |
TTCTCCATCAGAACTCAAGG+AGG | - | chr7.2:13818442-13818461 | MS.gene020342:CDS | 45.0% | |
TTTGGGCACGAGTTAAGCTT+GGG | - | chr7.2:13817731-13817750 | MS.gene020342:CDS | 45.0% | |
! | GAATTACGCGATTTTGTGGC+AGG | - | chr7.2:13817199-13817218 | MS.gene020342:CDS | 45.0% |
! | GATATGGTCAGGGCAACTTT+TGG | - | chr7.2:13817668-13817687 | MS.gene020342:CDS | 45.0% |
! | GGTTATAGAGCTTGGTTCGA+CGG | - | chr7.2:13817616-13817635 | MS.gene020342:CDS | 45.0% |
! | TTTTGGGCACGAGTTAAGCT+TGG | - | chr7.2:13817730-13817749 | MS.gene020342:CDS | 45.0% |
!! | GGCAAAAAAGTACCCTCAGT+TGG | - | chr7.2:13817904-13817923 | MS.gene020342:CDS | 45.0% |
!! | TCTATAACCCCGGCTTTAAG+AGG | + | chr7.2:13817605-13817624 | None:intergenic | 45.0% |
!!! | GCCTGAAGAGCAAGGTTTTT+TGG | - | chr7.2:13817646-13817665 | MS.gene020342:CDS | 45.0% |
AAAACCTGCCAATGGACGAG+AGG | - | chr7.2:13818042-13818061 | MS.gene020342:CDS | 50.0% | |
AAACCGGGTGGATATCCAAG+GGG | + | chr7.2:13818336-13818355 | None:intergenic | 50.0% | |
AAAGCCGGGGTTATAGAGCT+TGG | - | chr7.2:13817608-13817627 | MS.gene020342:CDS | 50.0% | |
AAGATTCATGGTTGCTGGGG+TGG | - | chr7.2:13817347-13817366 | MS.gene020342:CDS | 50.0% | |
ACACTGTCAGGATCCCAAAG+GGG | - | chr7.2:13817268-13817287 | MS.gene020342:CDS | 50.0% | |
AGAAACCGGGTGGATATCCA+AGG | + | chr7.2:13818338-13818357 | None:intergenic | 50.0% | |
AGAGGGAGAAAACCTGCCAA+TGG | - | chr7.2:13818034-13818053 | MS.gene020342:CDS | 50.0% | |
ATCTACCTCTGGACAGGCTA+AGG | - | chr7.2:13817694-13817713 | MS.gene020342:CDS | 50.0% | |
CCAGCATCAGAAGACCAACT+TGG | + | chr7.2:13817509-13817528 | None:intergenic | 50.0% | |
CGAACCAAGCTCTATAACCC+CGG | + | chr7.2:13817615-13817634 | None:intergenic | 50.0% | |
CTCCATCAGAACTCAAGGAG+GGG | - | chr7.2:13818444-13818463 | MS.gene020342:CDS | 50.0% | |
CTTGGCGCAAACCATGCTTA+TGG | - | chr7.2:13817845-13817864 | MS.gene020342:CDS | 50.0% | |
GAAACCGGGTGGATATCCAA+GGG | + | chr7.2:13818337-13818356 | None:intergenic | 50.0% | |
GACACTGTCAGGATCCCAAA+GGG | - | chr7.2:13817267-13817286 | MS.gene020342:CDS | 50.0% | |
GAGCGGAAGCCTAGAAAAAG+AGG | - | chr7.2:13818016-13818035 | MS.gene020342:CDS | 50.0% | |
GGCCAATGTTTCAACTTCCC+AGG | - | chr7.2:13818402-13818421 | MS.gene020342:CDS | 50.0% | |
GGGAAGATTCATGGTTGCTG+GGG | - | chr7.2:13817344-13817363 | MS.gene020342:CDS | 50.0% | |
GGGGAAGATTCATGGTTGCT+GGG | - | chr7.2:13817343-13817362 | MS.gene020342:CDS | 50.0% | |
GTCCAAGGAATGAGCAGGAA+AGG | - | chr7.2:13817291-13817310 | MS.gene020342:CDS | 50.0% | |
TCATTCCTTGGACCCCCTTT+GGG | + | chr7.2:13817284-13817303 | None:intergenic | 50.0% | |
TCCCTTTCCTGCTCATTCCT+TGG | + | chr7.2:13817296-13817315 | None:intergenic | 50.0% | |
TGGAGAATCTACCTCTGGAC+AGG | - | chr7.2:13817688-13817707 | MS.gene020342:CDS | 50.0% | |
TGGGGAAGATTCATGGTTGC+TGG | - | chr7.2:13817342-13817361 | MS.gene020342:CDS | 50.0% | |
TGTTAGAGTTAGCTGCCCCT+TGG | - | chr7.2:13818318-13818337 | MS.gene020342:CDS | 50.0% | |
TTGAAGCGGAGAGGCAAAGA+CGG | - | chr7.2:13818080-13818099 | MS.gene020342:CDS | 50.0% | |
TTGGATATCCACCCGGTTTC+TGG | - | chr7.2:13818337-13818356 | MS.gene020342:CDS | 50.0% | |
TTGGGCACGAGTTAAGCTTG+GGG | - | chr7.2:13817732-13817751 | MS.gene020342:CDS | 50.0% | |
! | AATTCTTCCAACGGGGGTGT+AGG | - | chr7.2:13817869-13817888 | MS.gene020342:CDS | 50.0% |
! | TTCCCCTCCTTGAGTTCTGA+TGG | + | chr7.2:13818449-13818468 | None:intergenic | 50.0% |
!! | CAGGTTGCCGGTTTGAAATC+CGG | - | chr7.2:13817218-13817237 | MS.gene020342:CDS | 50.0% |
!! | CCAAGTTGGTCTTCTGATGC+TGG | - | chr7.2:13817506-13817525 | MS.gene020342:CDS | 50.0% |
!! | TCGTTTCTGGCTAAATCGGC+TGG | - | chr7.2:13817557-13817576 | MS.gene020342:CDS | 50.0% |
ATACGGTGAGGGACACTGTC+AGG | - | chr7.2:13817256-13817275 | MS.gene020342:CDS | 55.0% | |
CACTGTCAGGATCCCAAAGG+GGG | - | chr7.2:13817269-13817288 | MS.gene020342:CDS | 55.0% | |
CAGTGGTTCCTCTCGTCCAT+TGG | + | chr7.2:13818053-13818072 | None:intergenic | 55.0% | |
CTCATTCCTTGGACCCCCTT+TGG | + | chr7.2:13817285-13817304 | None:intergenic | 55.0% | |
GAAGACTCCTCCTCACCTCT+TGG | - | chr7.2:13817989-13818008 | MS.gene020342:CDS | 55.0% | |
GAGATGGTGCCTGAAGAGCA+AGG | - | chr7.2:13817638-13817657 | MS.gene020342:CDS | 55.0% | |
GGACACTGTCAGGATCCCAA+AGG | - | chr7.2:13817266-13817285 | MS.gene020342:CDS | 55.0% | |
TGAAGCGGAGAGGCAAAGAC+GGG | - | chr7.2:13818081-13818100 | MS.gene020342:CDS | 55.0% | |
TGCTACCTTAGCCTGTCCAG+AGG | + | chr7.2:13817702-13817721 | None:intergenic | 55.0% | |
TGGGCACGAGTTAAGCTTGG+GGG | - | chr7.2:13817733-13817752 | MS.gene020342:CDS | 55.0% | |
! | AGAGCTTGGTTCGACGGAGA+TGG | - | chr7.2:13817622-13817641 | MS.gene020342:CDS | 55.0% |
! | GCGATTTTGTGGCAGGTTGC+CGG | - | chr7.2:13817206-13817225 | MS.gene020342:CDS | 55.0% |
!! | GTTGCCGGTTTGAAATCCGG+TGG | - | chr7.2:13817221-13817240 | MS.gene020342:CDS | 55.0% |
AGGATCCCAAAGGGGGTCCA+AGG | - | chr7.2:13817276-13817295 | MS.gene020342:CDS | 60.0% | |
AGGGGGTCCAAGGAATGAGC+AGG | - | chr7.2:13817286-13817305 | MS.gene020342:CDS | 60.0% | |
CCTCACCTCTTGGAGACGAG+CGG | - | chr7.2:13817999-13818018 | MS.gene020342:CDS | 60.0% | |
CTCGTCTCCAAGAGGTGAGG+AGG | + | chr7.2:13817999-13818018 | None:intergenic | 60.0% | |
CTGCCCCTTGGATATCCACC+CGG | - | chr7.2:13818330-13818349 | MS.gene020342:CDS | 60.0% | |
GGGTGTAGGAGACAGCAACG+AGG | - | chr7.2:13817883-13817902 | MS.gene020342:CDS | 60.0% | |
GGTTCCTCTCGTCCATTGGC+AGG | + | chr7.2:13818049-13818068 | None:intergenic | 60.0% | |
CCGCTCGTCTCCAAGAGGTG+AGG | + | chr7.2:13818002-13818021 | None:intergenic | 65.0% | |
GCTGTCTCCTACACCCCCGT+TGG | + | chr7.2:13817879-13817898 | None:intergenic | 65.0% | |
GGCTTCCGCTCGTCTCCAAG+AGG | + | chr7.2:13818007-13818026 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 13817011 | 13818522 | 13817011 | ID=MS.gene020342 |
chr7.2 | mRNA | 13817011 | 13818522 | 13817011 | ID=MS.gene020342.t1;Parent=MS.gene020342 |
chr7.2 | exon | 13817011 | 13818522 | 13817011 | ID=MS.gene020342.t1.exon1;Parent=MS.gene020342.t1 |
chr7.2 | CDS | 13817011 | 13818522 | 13817011 | ID=cds.MS.gene020342.t1;Parent=MS.gene020342.t1 |
Gene Sequence |
Protein sequence |