Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020387.t1 | XP_013449918.1 | 99 | 201 | 2 | 0 | 13 | 213 | 12 | 212 | 2.70E-68 | 268.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020387.t1 | Q941D5 | 88.1 | 201 | 24 | 0 | 11 | 211 | 10 | 210 | 1.5e-59 | 230.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020387.t1 | A0A072U3L4 | 99.0 | 201 | 2 | 0 | 13 | 213 | 12 | 212 | 2.0e-68 | 268.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020387 | MS.gene025196 | PPI |
| MS.gene020387 | MS.gene75911 | PPI |
| MS.gene051184 | MS.gene020387 | PPI |
| MS.gene020387 | MS.gene09166 | PPI |
| MS.gene020387 | MS.gene98009 | PPI |
| MS.gene020387 | MS.gene09111 | PPI |
| MS.gene033909 | MS.gene020387 | PPI |
| MS.gene020387 | MS.gene007726 | PPI |
| MS.gene020387 | MS.gene75244 | PPI |
| MS.gene020387 | MS.gene049786 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020387.t1 | MTR_7g097170 | 98.507 | 201 | 3 | 0 | 13 | 213 | 12 | 212 | 1.66e-143 | 399 |
| MS.gene020387.t1 | MTR_1g069715 | 82.266 | 203 | 36 | 0 | 11 | 213 | 475 | 677 | 5.42e-118 | 350 |
| MS.gene020387.t1 | MTR_2g047875 | 78.049 | 205 | 41 | 1 | 11 | 211 | 10 | 214 | 7.82e-107 | 306 |
| MS.gene020387.t1 | MTR_2g041190 | 43.891 | 221 | 114 | 2 | 1 | 211 | 1 | 221 | 2.99e-43 | 145 |
| MS.gene020387.t1 | MTR_8g019700 | 48.603 | 179 | 92 | 0 | 1 | 179 | 1 | 179 | 1.28e-41 | 140 |
| MS.gene020387.t1 | MTR_4g057565 | 32.768 | 177 | 109 | 2 | 11 | 182 | 14 | 185 | 1.43e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020387.t1 | AT1G03950 | 86.070 | 201 | 28 | 0 | 11 | 211 | 10 | 210 | 2.51e-124 | 350 |
| MS.gene020387.t1 | AT5G44560 | 73.460 | 211 | 46 | 1 | 11 | 211 | 10 | 220 | 1.65e-106 | 305 |
| MS.gene020387.t1 | AT5G44560 | 73.500 | 200 | 43 | 1 | 22 | 211 | 1 | 200 | 2.36e-100 | 289 |
| MS.gene020387.t1 | AT5G44560 | 77.515 | 169 | 38 | 0 | 11 | 179 | 10 | 178 | 7.46e-93 | 270 |
| MS.gene020387.t1 | AT5G44560 | 78.295 | 129 | 28 | 0 | 11 | 139 | 10 | 138 | 1.50e-69 | 209 |
| MS.gene020387.t1 | AT2G06530 | 48.113 | 212 | 99 | 4 | 11 | 211 | 12 | 223 | 2.24e-46 | 153 |
| MS.gene020387.t1 | AT2G06530 | 46.766 | 201 | 96 | 4 | 22 | 211 | 2 | 202 | 1.40e-40 | 137 |
| MS.gene020387.t1 | AT5G22950 | 29.864 | 221 | 131 | 4 | 11 | 212 | 14 | 229 | 9.14e-16 | 73.6 |
Find 43 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTGTGCCGATTGTTTC+TGG | 0.092577 | 7.2:-13206640 | None:intergenic |
| ATAACTTTGGCTTGCTTTGC+TGG | 0.189100 | 7.2:-13206608 | None:intergenic |
| GCAACAGATTGCTAATCTTC+AGG | 0.286548 | 7.2:+13205605 | MS.gene020387:CDS |
| CTTTGCTGCGATTCTCCCTT+TGG | 0.289266 | 7.2:-13207862 | None:intergenic |
| ATAGGTATTGAGAGGGAAAT+TGG | 0.295401 | 7.2:+13205219 | MS.gene020387:intron |
| GGCAATGTCAGCTATGAATA+AGG | 0.369472 | 7.2:+13205840 | MS.gene020387:CDS |
| TTTGCTGCGATTCTCCCTTT+GGG | 0.375553 | 7.2:-13207861 | None:intergenic |
| TACTAGCTCGTCAGCTGATA+AGG | 0.390691 | 7.2:+13205577 | MS.gene020387:CDS |
| CTGGAATTCCTGCATAACTT+TGG | 0.413362 | 7.2:-13206621 | None:intergenic |
| GGAAATTGGATCATTACAAT+TGG | 0.414552 | 7.2:+13205233 | MS.gene020387:CDS |
| TGCTAATCTTCAGGGTAGTC+GGG | 0.416103 | 7.2:+13205614 | MS.gene020387:CDS |
| TGATGACCTTGAGAAGCGTT+TGG | 0.421971 | 7.2:+13208131 | MS.gene020387:CDS |
| GCACATTCTTCTGTTGCTGT+TGG | 0.431120 | 7.2:+13205799 | MS.gene020387:CDS |
| TCTGTTGCTGTTGGCATGAA+AGG | 0.439539 | 7.2:+13205808 | MS.gene020387:CDS |
| CAACAGATTGCTAATCTTCA+GGG | 0.455803 | 7.2:+13205606 | MS.gene020387:CDS |
| TTGCTAATCTTCAGGGTAGT+CGG | 0.468100 | 7.2:+13205613 | MS.gene020387:CDS |
| TGACAGGTGCTTGATGAAAT+CGG | 0.480841 | 7.2:+13207714 | MS.gene020387:intron |
| TGGCATGAAAGGCGCTACTA+AGG | 0.493496 | 7.2:+13205819 | MS.gene020387:CDS |
| CTCTCACGAAGAGCCTCTGC+AGG | 0.503781 | 7.2:-13205095 | None:intergenic |
| CGGTGTCGATATTGCCTCAC+AGG | 0.505099 | 7.2:+13207734 | MS.gene020387:CDS |
| CTTAGCAGTTCTCTTAATCT+CGG | 0.515458 | 7.2:-13205372 | None:intergenic |
| ATTAAGAGAACTGCTAAGAC+AGG | 0.519875 | 7.2:+13205377 | MS.gene020387:CDS |
| CTCGTCAGCTGATAAGGCTT+AGG | 0.530813 | 7.2:+13205583 | MS.gene020387:CDS |
| AAAGCAAGCCAAAGTTATGC+AGG | 0.535984 | 7.2:+13206613 | MS.gene020387:CDS |
| TGACCTTGAGAAGCGTTTGG+CGG | 0.541826 | 7.2:+13208134 | MS.gene020387:CDS |
| AGTTATCTTCAGCTCCCAAA+GGG | 0.551907 | 7.2:+13207847 | MS.gene020387:intron |
| CCAGAAACAATCGGCACAGA+TGG | 0.552247 | 7.2:+13206640 | MS.gene020387:CDS |
| GCAGGAATTCCAGAAACAAT+CGG | 0.554202 | 7.2:+13206631 | MS.gene020387:CDS |
| GCAAAGAATACTGAAAATGT+TGG | 0.554829 | 7.2:+13207879 | MS.gene020387:CDS |
| AGAATACTGAAAATGTTGGC+AGG | 0.560171 | 7.2:+13207883 | MS.gene020387:CDS |
| AGATGTCATAGATGATGCCT+TGG | 0.571244 | 7.2:+13206778 | MS.gene020387:CDS |
| CAGTTATCTTCAGCTCCCAA+AGG | 0.578514 | 7.2:+13207846 | MS.gene020387:intron |
| TTCAGCTTCATCATCATCCA+AGG | 0.587316 | 7.2:-13206795 | None:intergenic |
| GAGCCGCCAAACGCTTCTCA+AGG | 0.592287 | 7.2:-13208137 | None:intergenic |
| TCATATATATAGGTATTGAG+AGG | 0.599716 | 7.2:+13205211 | MS.gene020387:intron |
| AGAGAATAGATTACCTCTAG+TGG | 0.604125 | 7.2:-13205138 | None:intergenic |
| GGATGATGATGAAGCTGAAG+AGG | 0.605718 | 7.2:+13206799 | MS.gene020387:CDS |
| GGTAGTCGGGCTCAGATGAG+AGG | 0.622685 | 7.2:+13205627 | MS.gene020387:CDS |
| CATATATATAGGTATTGAGA+GGG | 0.628943 | 7.2:+13205212 | MS.gene020387:intron |
| GAAATGACTAACGCCACTAG+AGG | 0.662249 | 7.2:+13205125 | MS.gene020387:CDS |
| AGGCATAGCAACTCACACGC+AGG | 0.676531 | 7.2:+13205647 | MS.gene020387:CDS |
| AACTGCTAAGACAGGAAACG+AGG | 0.681032 | 7.2:+13205385 | MS.gene020387:CDS |
| AAAGCTTATTCCTACCTGTG+AGG | 0.707349 | 7.2:-13207748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATTATAATAAA+AGG | - | chr7.2:13206863-13206882 | None:intergenic | 0.0% |
| !! | TTAAATTAATTAATAAAATT+AGG | - | chr7.2:13205186-13205205 | None:intergenic | 0.0% |
| !! | TAAAGTTAGTAATAATAATA+TGG | + | chr7.2:13205316-13205335 | MS.gene020387:intron | 10.0% |
| !! | TTTAATACTATCATATATAT+AGG | + | chr7.2:13205201-13205220 | MS.gene020387:intron | 10.0% |
| !!! | ATTTATAAATTAGTTTAAGA+GGG | - | chr7.2:13207452-13207471 | None:intergenic | 10.0% |
| !!! | TATTTATAAATTAGTTTAAG+AGG | - | chr7.2:13207453-13207472 | None:intergenic | 10.0% |
| !!! | TAGCATTTGATTTTTATTTA+TGG | + | chr7.2:13206236-13206255 | MS.gene020387:intron | 15.0% |
| !! | AAAAAACACAACAAAAACAA+AGG | - | chr7.2:13205691-13205710 | None:intergenic | 20.0% |
| !! | AAAAACACAACAAAAACAAA+GGG | - | chr7.2:13205690-13205709 | None:intergenic | 20.0% |
| !! | ACAAGTTAAAATTTCTTAAG+CGG | + | chr7.2:13208054-13208073 | MS.gene020387:intron | 20.0% |
| !!! | AAACAAAAGTATAGTTACAT+GGG | + | chr7.2:13207347-13207366 | MS.gene020387:intron | 20.0% |
| !!! | AAATGAAAATTCTTTTTTGG+AGG | + | chr7.2:13206162-13206181 | MS.gene020387:intron | 20.0% |
| !!! | AAATTTGATGTTTTATTCTC+AGG | + | chr7.2:13205542-13205561 | MS.gene020387:intron | 20.0% |
| !!! | AACTTTCTTATTGTTTTTAG+AGG | - | chr7.2:13207935-13207954 | None:intergenic | 20.0% |
| !!! | AATTTGATGTTTTATTCTCA+GGG | + | chr7.2:13205543-13205562 | MS.gene020387:intron | 20.0% |
| !!! | GTATTTTATTTGTACTCTTT+TGG | + | chr7.2:13207823-13207842 | MS.gene020387:intron | 20.0% |
| !!! | GTCCATTTTCATAATATAAA+GGG | + | chr7.2:13205899-13205918 | MS.gene020387:intron | 20.0% |
| !!! | TGCAAATGAAAATTCTTTTT+TGG | + | chr7.2:13206159-13206178 | MS.gene020387:intron | 20.0% |
| !!! | TGTCCATTTTCATAATATAA+AGG | + | chr7.2:13205898-13205917 | MS.gene020387:intron | 20.0% |
| !!! | TTTTCTAGAATTTTACAAGT+TGG | + | chr7.2:13206687-13206706 | MS.gene020387:intron | 20.0% |
| ! | AATCATTGTTTACACTTCAA+TGG | + | chr7.2:13206722-13206741 | MS.gene020387:intron | 25.0% |
| ! | AATGGTGTAGAAAATATTTG+TGG | - | chr7.2:13206536-13206555 | None:intergenic | 25.0% |
| ! | ATATTGTTCCAAAACTTGAT+TGG | + | chr7.2:13206093-13206112 | MS.gene020387:intron | 25.0% |
| ! | CAATAAGAAAGTTAAGAGAA+AGG | + | chr7.2:13207942-13207961 | MS.gene020387:intron | 25.0% |
| ! | CACCCTTTATATTATGAAAA+TGG | - | chr7.2:13205904-13205923 | None:intergenic | 25.0% |
| ! | CTAATAATCAGTGAAAACTT+AGG | + | chr7.2:13207415-13207434 | MS.gene020387:intron | 25.0% |
| ! | GCTAATATCATCTTAATGTA+AGG | - | chr7.2:13207645-13207664 | None:intergenic | 25.0% |
| ! | GTAAATAAACCAATCCAAAT+AGG | - | chr7.2:13207129-13207148 | None:intergenic | 25.0% |
| ! | GTAATAACATCAAAATTCCA+AGG | - | chr7.2:13208100-13208119 | None:intergenic | 25.0% |
| ! | GTCAAACAAAACATTGATAT+TGG | + | chr7.2:13206507-13206526 | MS.gene020387:intron | 25.0% |
| ! | TAGTTACAAGGTTTAAGAAA+TGG | + | chr7.2:13207579-13207598 | MS.gene020387:intron | 25.0% |
| ! | TATTGTTCCAAAACTTGATT+GGG | + | chr7.2:13206094-13206113 | MS.gene020387:intron | 25.0% |
| ! | TCAAATAAGTTAATTCGAAC+AGG | + | chr7.2:13205512-13205531 | MS.gene020387:intron | 25.0% |
| ! | TTAAAATGACCTGTAGTTTA+TGG | + | chr7.2:13206943-13206962 | MS.gene020387:intron | 25.0% |
| ! | TTATCTACTGACATAAACAA+AGG | - | chr7.2:13205490-13205509 | None:intergenic | 25.0% |
| ! | TTATTCACAAAGAGTAAGAT+GGG | + | chr7.2:13207606-13207625 | MS.gene020387:intron | 25.0% |
| ! | TTTATTCACAAAGAGTAAGA+TGG | + | chr7.2:13207605-13207624 | MS.gene020387:intron | 25.0% |
| !! | CAAACAAAAGTATAGTTACA+TGG | + | chr7.2:13207346-13207365 | MS.gene020387:intron | 25.0% |
| !! | CATGTAACTATACTTTTGTT+TGG | - | chr7.2:13207348-13207367 | None:intergenic | 25.0% |
| !! | TAGAGTTTTCATGAATTTTG+AGG | + | chr7.2:13206196-13206215 | MS.gene020387:intron | 25.0% |
| !! | TATGATATTTGACTTAGCTA+TGG | + | chr7.2:13205747-13205766 | MS.gene020387:intron | 25.0% |
| !! | TGTAATAGCAACATTTTGTT+TGG | + | chr7.2:13206118-13206137 | MS.gene020387:intron | 25.0% |
| !! | TGTTCATTTGCTAAATATTG+TGG | + | chr7.2:13206345-13206364 | MS.gene020387:intron | 25.0% |
| !!! | ATCTGCAAATTTTTAGTCAT+AGG | + | chr7.2:13205421-13205440 | MS.gene020387:intron | 25.0% |
| !!! | ATTTTGATGTTATTACAGCT+CGG | + | chr7.2:13208104-13208123 | MS.gene020387:intron | 25.0% |
| !!! | CATATATATAGGTATTGAGA+GGG | + | chr7.2:13205212-13205231 | MS.gene020387:intron | 25.0% |
| !!! | CTTATTGTTTTTAGAGGATA+GGG | - | chr7.2:13207929-13207948 | None:intergenic | 25.0% |
| !!! | TATCAATGTTTTGTTTGACT+CGG | - | chr7.2:13206506-13206525 | None:intergenic | 25.0% |
| !!! | TATGGATTGTTTGTTTTGTT+AGG | + | chr7.2:13205334-13205353 | MS.gene020387:intron | 25.0% |
| !!! | TCATATATATAGGTATTGAG+AGG | + | chr7.2:13205211-13205230 | MS.gene020387:intron | 25.0% |
| !!! | TCTTATTGTTTTTAGAGGAT+AGG | - | chr7.2:13207930-13207949 | None:intergenic | 25.0% |
| AAATTATCTCCACAAGATCA+TGG | - | chr7.2:13207390-13207409 | None:intergenic | 30.0% | |
| AACAATATTAAGGGTTGCTA+TGG | + | chr7.2:13206302-13206321 | MS.gene020387:intron | 30.0% | |
| AACGGTAAAAGACTGAAAAA+TGG | - | chr7.2:13206554-13206573 | None:intergenic | 30.0% | |
| AAGGGACTTCAGAAATTAAA+AGG | + | chr7.2:13206430-13206449 | MS.gene020387:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr7.2:13207211-13207230 | None:intergenic | 30.0% | |
| AATTATGCTTCTCTGTTTAC+AGG | + | chr7.2:13206890-13206909 | MS.gene020387:intron | 30.0% | |
| ATCTTGTGGAGATAATTTAG+GGG | + | chr7.2:13207392-13207411 | MS.gene020387:intron | 30.0% | |
| ATTGTTCCAAAACTTGATTG+GGG | + | chr7.2:13206095-13206114 | MS.gene020387:intron | 30.0% | |
| GAATCCAACAAATTAGGAAA+CGG | - | chr7.2:13206572-13206591 | None:intergenic | 30.0% | |
| GATCTTGTGGAGATAATTTA+GGG | + | chr7.2:13207391-13207410 | MS.gene020387:intron | 30.0% | |
| GCAAAGAATACTGAAAATGT+TGG | + | chr7.2:13207879-13207898 | MS.gene020387:CDS | 30.0% | |
| GGAAATTGGATCATTACAAT+TGG | + | chr7.2:13205233-13205252 | MS.gene020387:CDS | 30.0% | |
| GGAGCAATGAACAATATTAA+GGG | + | chr7.2:13206293-13206312 | MS.gene020387:intron | 30.0% | |
| TGATCTTGTGGAGATAATTT+AGG | + | chr7.2:13207390-13207409 | MS.gene020387:intron | 30.0% | |
| TGCAATGAATCCAACAAATT+AGG | - | chr7.2:13206578-13206597 | None:intergenic | 30.0% | |
| TGGAGCAATGAACAATATTA+AGG | + | chr7.2:13206292-13206311 | MS.gene020387:intron | 30.0% | |
| TTGAAGAACTGCTATTATCA+AGG | - | chr7.2:13206479-13206498 | None:intergenic | 30.0% | |
| TTTATTCTTGATTTCCCCAA+GGG | - | chr7.2:13207060-13207079 | None:intergenic | 30.0% | |
| ! | AATTAGTTTAAGAGGGTATG+CGG | - | chr7.2:13207445-13207464 | None:intergenic | 30.0% |
| ! | CCTATTTTGTATCCTAACTT+CGG | + | chr7.2:13207026-13207045 | MS.gene020387:intron | 30.0% |
| ! | TTTACCGTTTCCTAATTTGT+TGG | + | chr7.2:13206565-13206584 | MS.gene020387:intron | 30.0% |
| ! | TTTTATTCTTGATTTCCCCA+AGG | - | chr7.2:13207061-13207080 | None:intergenic | 30.0% |
| ! | TTTTGATGTTATTACAGCTC+GGG | + | chr7.2:13208105-13208124 | MS.gene020387:intron | 30.0% |
| !! | TTTAATTGATTTTCCTGCAG+AGG | + | chr7.2:13205082-13205101 | MS.gene020387:CDS | 30.0% |
| !! | TTTGCAAGTTTTAATGACCT+TGG | + | chr7.2:13208080-13208099 | MS.gene020387:intron | 30.0% |
| AAGAGCTTGTGAGATTGTTT+GGG | + | chr7.2:13207155-13207174 | MS.gene020387:intron | 35.0% | |
| ACATTATCTAGAGAAACGTG+TGG | + | chr7.2:13207472-13207491 | MS.gene020387:intron | 35.0% | |
| AGAATACTGAAAATGTTGGC+AGG | + | chr7.2:13207883-13207902 | MS.gene020387:CDS | 35.0% | |
| AGAGAATAGATTACCTCTAG+TGG | - | chr7.2:13205141-13205160 | None:intergenic | 35.0% | |
| ATTAAGAGAACTGCTAAGAC+AGG | + | chr7.2:13205377-13205396 | MS.gene020387:CDS | 35.0% | |
| CAACAGATTGCTAATCTTCA+GGG | + | chr7.2:13205606-13205625 | MS.gene020387:CDS | 35.0% | |
| CAGACTGTCATGATTTCTTA+TGG | + | chr7.2:13207546-13207565 | MS.gene020387:intron | 35.0% | |
| CATGTTAGTCCATAAACTAC+AGG | - | chr7.2:13206955-13206974 | None:intergenic | 35.0% | |
| CCGAAGTTAGGATACAAAAT+AGG | - | chr7.2:13207029-13207048 | None:intergenic | 35.0% | |
| CTACTAGGTGAAGTTAGTTA+AGG | + | chr7.2:13207103-13207122 | MS.gene020387:intron | 35.0% | |
| CTTAACTAACTTCACCTAGT+AGG | - | chr7.2:13207105-13207124 | None:intergenic | 35.0% | |
| CTTAGCAGTTCTCTTAATCT+CGG | - | chr7.2:13205375-13205394 | None:intergenic | 35.0% | |
| CTTGTAATTCGCGAAGAATT+TGG | + | chr7.2:13208012-13208031 | MS.gene020387:intron | 35.0% | |
| GAAGTTAGTTAAGGCCTATT+TGG | + | chr7.2:13207112-13207131 | MS.gene020387:intron | 35.0% | |
| GTAAGATGGGAATGAATTCA+AGG | + | chr7.2:13207619-13207638 | MS.gene020387:intron | 35.0% | |
| GTCTTCAGAAGGAAACATAA+TGG | - | chr7.2:13207506-13207525 | None:intergenic | 35.0% | |
| TAAGAGCTTGTGAGATTGTT+TGG | + | chr7.2:13207154-13207173 | MS.gene020387:intron | 35.0% | |
| TAGTTAAGGCCTATTTGGAT+TGG | + | chr7.2:13207117-13207136 | MS.gene020387:intron | 35.0% | |
| TCTGATTTCTTAAGCTATCC+TGG | - | chr7.2:13207246-13207265 | None:intergenic | 35.0% | |
| TGAAGTTCAGAAGTAGTTTC+AGG | - | chr7.2:13207528-13207547 | None:intergenic | 35.0% | |
| ! | ATATCATCTGACAGTGCTTT+TGG | + | chr7.2:13207788-13207807 | MS.gene020387:intron | 35.0% |
| ! | ATTACACCCCAATCAAGTTT+TGG | - | chr7.2:13206104-13206123 | None:intergenic | 35.0% |
| ! | ATTAGTTTAAGAGGGTATGC+GGG | - | chr7.2:13207444-13207463 | None:intergenic | 35.0% |
| ! | CTTATTTCTTAAAGCTCTCC+AGG | + | chr7.2:13207225-13207244 | MS.gene020387:intron | 35.0% |
| !! | ATAGGTATTGAGAGGGAAAT+TGG | + | chr7.2:13205219-13205238 | MS.gene020387:intron | 35.0% |
| !! | TGCATAAGCTATTTCTGTGA+CGG | - | chr7.2:13207278-13207297 | None:intergenic | 35.0% |
| !! | TTGTTGACTTGTGTTTGAGA+TGG | + | chr7.2:13205715-13205734 | MS.gene020387:intron | 35.0% |
| !!! | CTTTTTTGGAGGTGATATAG+AGG | + | chr7.2:13206173-13206192 | MS.gene020387:intron | 35.0% |
| AAAGCAAGCCAAAGTTATGC+AGG | + | chr7.2:13206613-13206632 | MS.gene020387:CDS | 40.0% | |
| AAAGCTTATTCCTACCTGTG+AGG | - | chr7.2:13207751-13207770 | None:intergenic | 40.0% | |
| ACCTTGTGTTACAATCCTTG+AGG | + | chr7.2:13206978-13206997 | MS.gene020387:intron | 40.0% | |
| AGAACTGCTATTATCAAGGC+TGG | - | chr7.2:13206475-13206494 | None:intergenic | 40.0% | |
| AGATGTCATAGATGATGCCT+TGG | + | chr7.2:13206778-13206797 | MS.gene020387:CDS | 40.0% | |
| AGGATAGGGAAAGAGTTACA+CGG | - | chr7.2:13207915-13207934 | None:intergenic | 40.0% | |
| AGTTATCTTCAGCTCCCAAA+GGG | + | chr7.2:13207847-13207866 | MS.gene020387:intron | 40.0% | |
| ATCAAGCACCTGTCAAGAAA+AGG | - | chr7.2:13207709-13207728 | None:intergenic | 40.0% | |
| CAAAGGGTTCAAGTGAACAA+TGG | - | chr7.2:13205674-13205693 | None:intergenic | 40.0% | |
| CCTTGTGTTACAATCCTTGA+GGG | + | chr7.2:13206979-13206998 | MS.gene020387:intron | 40.0% | |
| CTACCAAATCGTATCCTACT+AGG | + | chr7.2:13207088-13207107 | MS.gene020387:intron | 40.0% | |
| CTGGAATTCCTGCATAACTT+TGG | - | chr7.2:13206624-13206643 | None:intergenic | 40.0% | |
| GATTTGAATCTGTGACATCC+AGG | + | chr7.2:13206011-13206030 | MS.gene020387:intron | 40.0% | |
| GCAACAGATTGCTAATCTTC+AGG | + | chr7.2:13205605-13205624 | MS.gene020387:CDS | 40.0% | |
| GCAGGAATTCCAGAAACAAT+CGG | + | chr7.2:13206631-13206650 | MS.gene020387:CDS | 40.0% | |
| GGCAATGTCAGCTATGAATA+AGG | + | chr7.2:13205840-13205859 | MS.gene020387:CDS | 40.0% | |
| GTTGGATTCATTGCAGCAAA+TGG | + | chr7.2:13206583-13206602 | MS.gene020387:intron | 40.0% | |
| TACACCAGGTTTCCAAGAAA+GGG | + | chr7.2:13205929-13205948 | MS.gene020387:intron | 40.0% | |
| TCAAGCACCTGTCAAGAAAA+GGG | - | chr7.2:13207708-13207727 | None:intergenic | 40.0% | |
| TCACCTAGTAGGATACGATT+TGG | - | chr7.2:13207094-13207113 | None:intergenic | 40.0% | |
| TCATGAACTAACATGAGAGC+AGG | - | chr7.2:13206072-13206091 | None:intergenic | 40.0% | |
| TGACAGGTGCTTGATGAAAT+CGG | + | chr7.2:13207714-13207733 | MS.gene020387:intron | 40.0% | |
| TTCAGCTTCATCATCATCCA+AGG | - | chr7.2:13206798-13206817 | None:intergenic | 40.0% | |
| TTGCTAATCTTCAGGGTAGT+CGG | + | chr7.2:13205613-13205632 | MS.gene020387:CDS | 40.0% | |
| TTTGTGCGAGTTTGATGGAA+TGG | + | chr7.2:13206272-13206291 | MS.gene020387:intron | 40.0% | |
| ! | AGTAGTTTCAGGTCTTCAGA+AGG | - | chr7.2:13207517-13207536 | None:intergenic | 40.0% |
| ! | GGCTTTGTCACTTAGTTACA+AGG | + | chr7.2:13207567-13207586 | MS.gene020387:intron | 40.0% |
| ! | TCACTTACCCTTTTCTTGAC+AGG | + | chr7.2:13207698-13207717 | MS.gene020387:intron | 40.0% |
| !! | ATAACTTTGGCTTGCTTTGC+TGG | - | chr7.2:13206611-13206630 | None:intergenic | 40.0% |
| !! | CAAGCTGAGAAGTTGTTTCT+AGG | + | chr7.2:13205989-13206008 | MS.gene020387:intron | 40.0% |
| AACTGCTAAGACAGGAAACG+AGG | + | chr7.2:13205385-13205404 | MS.gene020387:CDS | 45.0% | |
| AACTTCGGTAGTAACACCCT+TGG | + | chr7.2:13207041-13207060 | MS.gene020387:intron | 45.0% | |
| ACACCAGGTTTCCAAGAAAG+GGG | + | chr7.2:13205930-13205949 | MS.gene020387:intron | 45.0% | |
| ACTTCGGTAGTAACACCCTT+GGG | + | chr7.2:13207042-13207061 | MS.gene020387:intron | 45.0% | |
| AGTTACATGGGTCATGCCAT+TGG | + | chr7.2:13207359-13207378 | MS.gene020387:intron | 45.0% | |
| CAAGATCATGGATAGCCCAA+TGG | - | chr7.2:13207378-13207397 | None:intergenic | 45.0% | |
| CAGTTATCTTCAGCTCCCAA+AGG | + | chr7.2:13207846-13207865 | MS.gene020387:intron | 45.0% | |
| CCCTCAAGGATTGTAACACA+AGG | - | chr7.2:13206982-13207001 | None:intergenic | 45.0% | |
| CTGGGGAGGGTAAATCTATA+TGG | + | chr7.2:13205955-13205974 | MS.gene020387:intron | 45.0% | |
| GAAATGACTAACGCCACTAG+AGG | + | chr7.2:13205125-13205144 | MS.gene020387:CDS | 45.0% | |
| GCAAGTTTGTGCGAGTTTGA+TGG | + | chr7.2:13206267-13206286 | MS.gene020387:intron | 45.0% | |
| GCACATTCTTCTGTTGCTGT+TGG | + | chr7.2:13205799-13205818 | MS.gene020387:CDS | 45.0% | |
| GTACACCAGGTTTCCAAGAA+AGG | + | chr7.2:13205928-13205947 | MS.gene020387:intron | 45.0% | |
| GTTACATGGGTCATGCCATT+GGG | + | chr7.2:13207360-13207379 | MS.gene020387:intron | 45.0% | |
| TACTAGCTCGTCAGCTGATA+AGG | + | chr7.2:13205577-13205596 | MS.gene020387:CDS | 45.0% | |
| TGCTAATCTTCAGGGTAGTC+GGG | + | chr7.2:13205614-13205633 | MS.gene020387:CDS | 45.0% | |
| TTGGGCTATCCATGATCTTG+TGG | + | chr7.2:13207378-13207397 | MS.gene020387:intron | 45.0% | |
| TTTGCTGCGATTCTCCCTTT+GGG | - | chr7.2:13207864-13207883 | None:intergenic | 45.0% | |
| ! | CTAAGCATTGCTAACCCTCA+AGG | - | chr7.2:13206996-13207015 | None:intergenic | 45.0% |
| ! | GGATGATGATGAAGCTGAAG+AGG | + | chr7.2:13206799-13206818 | MS.gene020387:CDS | 45.0% |
| ! | TCTGTTGCTGTTGGCATGAA+AGG | + | chr7.2:13205808-13205827 | MS.gene020387:CDS | 45.0% |
| !! | AGGGTGTTACTACCGAAGTT+AGG | - | chr7.2:13207041-13207060 | None:intergenic | 45.0% |
| !! | TAAAGGGTGTCTAGTACACC+AGG | + | chr7.2:13205915-13205934 | MS.gene020387:intron | 45.0% |
| !! | TGATGACCTTGAGAAGCGTT+TGG | + | chr7.2:13208131-13208150 | MS.gene020387:CDS | 45.0% |
| !! | GTTAAATTAAATATATTAAA+AGG | - | chr7.2:13205282-13205301 | None:intergenic | 5.0% |
| ACACACACACACACACGGAA+AGG | + | chr7.2:13206411-13206430 | MS.gene020387:intron | 50.0% | |
| ACTAACATGAGAGCAGGCCT+TGG | - | chr7.2:13206066-13206085 | None:intergenic | 50.0% | |
| CACACACACACACACACACA+CGG | + | chr7.2:13206406-13206425 | MS.gene020387:intron | 50.0% | |
| CACACACACACACACGGAAA+GGG | + | chr7.2:13206412-13206431 | MS.gene020387:intron | 50.0% | |
| CACCAGGTTTCCAAGAAAGG+GGG | + | chr7.2:13205931-13205950 | MS.gene020387:intron | 50.0% | |
| CCAGAAACAATCGGCACAGA+TGG | + | chr7.2:13206640-13206659 | MS.gene020387:CDS | 50.0% | |
| CTCGTCAGCTGATAAGGCTT+AGG | + | chr7.2:13205583-13205602 | MS.gene020387:CDS | 50.0% | |
| CTTCGGTAGTAACACCCTTG+GGG | + | chr7.2:13207043-13207062 | MS.gene020387:intron | 50.0% | |
| CTTTGCTGCGATTCTCCCTT+TGG | - | chr7.2:13207865-13207884 | None:intergenic | 50.0% | |
| GTCGATATTGCCTCACAGGT+AGG | + | chr7.2:13207738-13207757 | MS.gene020387:intron | 50.0% | |
| GTTTCCAAGAAAGGGGGTCT+GGG | + | chr7.2:13205937-13205956 | MS.gene020387:intron | 50.0% | |
| TGTGACATCCAGGTCACACA+AGG | + | chr7.2:13206021-13206040 | MS.gene020387:intron | 50.0% | |
| TGTGTGTGCATGTGACAGGA+GGG | - | chr7.2:13206394-13206413 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGCATGTGAC+AGG | - | chr7.2:13206398-13206417 | None:intergenic | 50.0% | |
| TTTCCAAGAAAGGGGGTCTG+GGG | + | chr7.2:13205938-13205957 | MS.gene020387:intron | 50.0% | |
| ! | GGTTGCTTGTCATTTCGTGC+AGG | + | chr7.2:13205768-13205787 | MS.gene020387:intron | 50.0% |
| !! | CCATCTGTGCCGATTGTTTC+TGG | - | chr7.2:13206643-13206662 | None:intergenic | 50.0% |
| !! | TGACCTTGAGAAGCGTTTGG+CGG | + | chr7.2:13208134-13208153 | MS.gene020387:CDS | 50.0% |
| !! | TGGCATGAAAGGCGCTACTA+AGG | + | chr7.2:13205819-13205838 | MS.gene020387:CDS | 50.0% |
| AGGCATAGCAACTCACACGC+AGG | + | chr7.2:13205647-13205666 | MS.gene020387:CDS | 55.0% | |
| GACCCCCTTTCTTGGAAACC+TGG | - | chr7.2:13205936-13205955 | None:intergenic | 55.0% | |
| GCAACCTTGCGATTGTGCCA+AGG | + | chr7.2:13206046-13206065 | MS.gene020387:intron | 55.0% | |
| GGTTTCCAAGAAAGGGGGTC+TGG | + | chr7.2:13205936-13205955 | MS.gene020387:intron | 55.0% | |
| GTGTGTGTGCATGTGACAGG+AGG | - | chr7.2:13206395-13206414 | None:intergenic | 55.0% | |
| !! | CGGTGTCGATATTGCCTCAC+AGG | + | chr7.2:13207734-13207753 | MS.gene020387:CDS | 55.0% |
| CAAGAAAGGGGGTCTGGGGA+GGG | + | chr7.2:13205942-13205961 | MS.gene020387:intron | 60.0% | |
| CAGGCCTTGGCACAATCGCA+AGG | - | chr7.2:13206053-13206072 | None:intergenic | 60.0% | |
| CTCTCACGAAGAGCCTCTGC+AGG | - | chr7.2:13205098-13205117 | None:intergenic | 60.0% | |
| GAGCCGCCAAACGCTTCTCA+AGG | - | chr7.2:13208140-13208159 | None:intergenic | 60.0% | |
| GGTAGTCGGGCTCAGATGAG+AGG | + | chr7.2:13205627-13205646 | MS.gene020387:CDS | 60.0% | |
| GGTTGCTGCCTTGTGTGACC+TGG | - | chr7.2:13206032-13206051 | None:intergenic | 60.0% | |
| CCAAGAAAGGGGGTCTGGGG+AGG | + | chr7.2:13205941-13205960 | MS.gene020387:intron | 65.0% | |
| CCTCCCCAGACCCCCTTTCT+TGG | - | chr7.2:13205944-13205963 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 13205065 | 13208173 | 13205065 | ID=MS.gene020387 |
| chr7.2 | mRNA | 13205065 | 13208173 | 13205065 | ID=MS.gene020387.t1;Parent=MS.gene020387 |
| chr7.2 | exon | 13205065 | 13205146 | 13205065 | ID=MS.gene020387.t1.exon1;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13205065 | 13205146 | 13205065 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13205223 | 13205257 | 13205223 | ID=MS.gene020387.t1.exon2;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13205223 | 13205257 | 13205223 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13205356 | 13205406 | 13205356 | ID=MS.gene020387.t1.exon3;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13205356 | 13205406 | 13205356 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13205564 | 13205668 | 13205564 | ID=MS.gene020387.t1.exon4;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13205564 | 13205668 | 13205564 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13205790 | 13205861 | 13205790 | ID=MS.gene020387.t1.exon5;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13205790 | 13205861 | 13205790 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13206599 | 13206670 | 13206599 | ID=MS.gene020387.t1.exon6;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13206599 | 13206670 | 13206599 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13206764 | 13206844 | 13206764 | ID=MS.gene020387.t1.exon7;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13206764 | 13206844 | 13206764 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13207720 | 13207755 | 13207720 | ID=MS.gene020387.t1.exon8;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13207720 | 13207755 | 13207720 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13207849 | 13207904 | 13207849 | ID=MS.gene020387.t1.exon9;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13207849 | 13207904 | 13207849 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| chr7.2 | exon | 13208122 | 13208173 | 13208122 | ID=MS.gene020387.t1.exon10;Parent=MS.gene020387.t1 |
| chr7.2 | CDS | 13208122 | 13208173 | 13208122 | ID=cds.MS.gene020387.t1;Parent=MS.gene020387.t1 |
| Gene Sequence |
| Protein sequence |
