AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023325

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023325.t1 MTR_7g451450 34.625 413 248 9 33 438 68 465 6.69e-64 214
MS.gene023325.t1 MTR_7g072420 30.864 405 243 13 44 424 75 466 1.86e-46 168
MS.gene023325.t1 MTR_8g091660 29.821 446 267 16 26 443 54 481 2.02e-46 167
MS.gene023325.t1 MTR_3g465800 28.829 444 278 15 21 440 41 470 2.25e-44 162
MS.gene023325.t1 MTR_3g465800 29.950 404 248 14 58 440 10 399 1.55e-42 155
MS.gene023325.t1 MTR_4g076100 26.714 423 249 13 52 427 81 489 3.47e-36 140
MS.gene023325.t1 MTR_3g118070 30.671 313 192 8 52 352 19 318 2.01e-33 130
MS.gene023325.t1 MTR_3g118070 30.671 313 192 8 52 352 76 375 3.41e-33 131
MS.gene023325.t1 MTR_4g076100 27.515 338 189 11 132 427 22 345 1.21e-30 122
MS.gene023325.t1 MTR_4g128620 26.383 235 156 7 218 437 587 819 6.28e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023325.t1 AT5G46180 72.581 434 118 1 36 469 43 475 0.0 681
MS.gene023325.t1 AT1G80600 33.333 411 258 7 30 436 55 453 7.37e-65 216
MS.gene023325.t1 AT4G39660 29.882 425 255 14 44 443 70 476 2.27e-46 167
MS.gene023325.t1 AT4G39660 29.904 418 250 14 51 443 2 401 1.39e-45 164
MS.gene023325.t1 AT2G38400 29.873 395 243 10 52 424 80 462 3.22e-44 162
MS.gene023325.t1 AT2G38400 29.620 395 244 10 52 424 80 462 3.29e-44 162
MS.gene023325.t1 AT3G08860 28.924 446 269 15 21 437 49 475 6.82e-44 161
MS.gene023325.t1 AT3G08860 29.099 433 263 14 21 424 49 466 1.17e-43 160
MS.gene023325.t1 AT3G22200 28.947 418 247 14 52 427 70 479 4.73e-37 142
MS.gene023325.t1 AT3G22200 28.947 418 247 14 52 427 79 488 5.80e-37 142
MS.gene023325.t1 AT5G63570 29.814 322 200 9 52 360 19 327 4.13e-31 124
MS.gene023325.t1 AT5G63570 29.814 322 200 9 52 360 82 390 7.11e-31 124
MS.gene023325.t1 AT3G48730 29.193 322 202 9 52 360 80 388 2.24e-28 117

Find 118 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCATAGCTGCATTTATTT+TGG 0.157532 4.2:-15541866 MS.gene023325:CDS
GGCCATCTTAAAGTTGATTT+TGG 0.199551 4.2:-15542039 MS.gene023325:CDS
TTAAGATGGCCTGGCATTAA+AGG 0.213274 4.2:+15542051 None:intergenic
GCTGGAGGAGCAGCATCTTT+TGG 0.213355 4.2:+15538173 None:intergenic
AATCATCAACACGTTATATT+TGG 0.227981 4.2:+15540619 None:intergenic
GAAAGTTTGTCCCCTGTATC+AGG 0.309360 4.2:-15538805 MS.gene023325:CDS
AATGAAGCTACCCGTGGTTT+TGG 0.314723 4.2:-15542075 MS.gene023325:CDS
ATTCTTTGTCAATGATTGTT+TGG 0.317700 4.2:+15543424 None:intergenic
CGCACCTCCTTCACATGGTC+CGG 0.342009 4.2:+15538865 None:intergenic
CGAGAAGCTCACCTCCCATT+TGG 0.348974 4.2:+15538917 None:intergenic
CTTAATTCAAAGCCTGATAC+AGG 0.361779 4.2:+15538793 None:intergenic
TCTGCAAGAACTGCGCTAAC+TGG 0.362917 4.2:+15539773 None:intergenic
TACAGAGGAACCAGAACTTT+TGG 0.363782 4.2:-15543480 MS.gene023325:CDS
TCATGTTGTGGCTGCTTCAA+TGG 0.367473 4.2:-15542132 MS.gene023325:CDS
CATAGTTATACCTCATTGTT+GGG 0.368104 4.2:+15542382 None:intergenic
TTCTTTGTCAATGATTGTTT+GGG 0.376263 4.2:+15543425 None:intergenic
AGCCTTGTTTGGTTATGATA+TGG 0.380865 4.2:-15542488 MS.gene023325:CDS
TGGCTACTCTGCAGTTAATC+AGG 0.391203 4.2:-15542974 MS.gene023325:intron
TGTGGCAACACCAAAAGTTC+TGG 0.395603 4.2:+15543470 None:intergenic
GAACCTATCCAAGGGGAAGC+TGG 0.400196 4.2:-15541844 MS.gene023325:CDS
TCATAGTTATACCTCATTGT+TGG 0.402470 4.2:+15542381 None:intergenic
TCAATATATTTGTTTCCCTC+TGG 0.406966 4.2:+15543006 None:intergenic
CGAGGGCCTTAGAACCTTGT+TGG 0.409141 4.2:+15538240 None:intergenic
TGAGATCCAACAAGGTTCTA+AGG 0.410990 4.2:-15538246 MS.gene023325:CDS
ACAGCTTTCAAATAACCATC+TGG 0.413613 4.2:+15540656 None:intergenic
GAGAAGCTCACCTCCCATTT+GGG 0.418819 4.2:+15538918 None:intergenic
TGCTTCAATGGTCGTACATT+GGG 0.424592 4.2:-15542120 MS.gene023325:CDS
AAAGATGCTGCTCCTCCAGC+TGG 0.425140 4.2:-15538170 MS.gene023325:CDS
TCAGATACTAGGGAAAGCTT+TGG 0.426949 4.2:-15539810 MS.gene023325:intron
GAGTATTTGACAGCCTTGTT+TGG 0.427807 4.2:-15542499 MS.gene023325:CDS
TCTTAAAGCTTTAAAAGATC+AGG 0.428054 4.2:-15542581 MS.gene023325:CDS
TTTGCATGAGCAAATACAAT+AGG 0.428807 4.2:+15543048 None:intergenic
CAGATACTAGGGAAAGCTTT+GGG 0.440625 4.2:-15539809 MS.gene023325:CDS
TGAACACCAACCACTACATC+TGG 0.440669 4.2:+15540527 None:intergenic
CCTTCAGCACCAGTATTCAT+AGG 0.441808 4.2:+15542460 None:intergenic
GTGAAGGAGGTGCGGGGAAG+AGG 0.443048 4.2:-15538856 MS.gene023325:CDS
TAAGGCCCTCGCTGATGTGC+TGG 0.445290 4.2:-15538228 MS.gene023325:CDS
CGTTGTGGTCGAGTCGTGTA+TGG 0.450567 4.2:-15538131 MS.gene023325:CDS
ATTGCTGATGAAATACAAAC+TGG 0.456192 4.2:-15540599 MS.gene023325:CDS
CGGGGAAGAGGACTGTTCAT+TGG 0.461273 4.2:-15538844 MS.gene023325:CDS
AACCTATCCAAGGGGAAGCT+GGG 0.467176 4.2:-15541843 MS.gene023325:CDS
ATTGTATTTGCTCATGCAAA+GGG 0.473811 4.2:-15543045 MS.gene023325:CDS
GGACCATGTGAAGGAGGTGC+GGG 0.476342 4.2:-15538863 MS.gene023325:CDS
CAAACTGGATTAGCAAGAAC+AGG 0.479961 4.2:-15540584 MS.gene023325:CDS
ATTGGACAGATCTACCCAAA+TGG 0.483780 4.2:-15538932 MS.gene023325:intron
CTAGGGAAAGCTTTGGGTGG+AGG 0.491794 4.2:-15539803 MS.gene023325:CDS
TTAAACCTTCCATGCTGTCC+AGG 0.491922 4.2:+15539725 None:intergenic
CTTTAAAAGATCAGGCAGAC+AGG 0.501503 4.2:-15542573 MS.gene023325:CDS
CAAATGGGAGGTGAGCTTCT+CGG 0.504493 4.2:-15538916 MS.gene023325:CDS
AACATACCCCAGCTTCCCCT+TGG 0.504988 4.2:+15541836 None:intergenic
CGTTGAAGTTAGCAAGAAAG+TGG 0.505236 4.2:-15542426 MS.gene023325:CDS
CCACAACGATCACATGCACT+AGG 0.505325 4.2:+15538146 None:intergenic
CTGCTTCAATGGTCGTACAT+TGG 0.506187 4.2:-15542121 MS.gene023325:CDS
TTGGGAAGATGAAGAAGCGT+TGG 0.508848 4.2:+15543443 None:intergenic
TTTCTTACCTTATGCACAGT+GGG 0.509433 4.2:+15538704 None:intergenic
ATGGCAACTGCACTGGCCAA+TGG 0.511220 4.2:+15539206 None:intergenic
TGAGGCAATGGCAACTGCAC+TGG 0.516585 4.2:+15539199 None:intergenic
CACCAAAATCAACTTTAAGA+TGG 0.516646 4.2:+15542037 None:intergenic
TATTGTATTTGCTCATGCAA+AGG 0.517613 4.2:-15543046 MS.gene023325:CDS
GCTCTTATTGTCTCATGTTG+TGG 0.519417 4.2:-15542144 MS.gene023325:CDS
AAATCAACTTTAAGATGGCC+TGG 0.519591 4.2:+15542042 None:intergenic
TCACATGCACTAGGGCCAGC+TGG 0.522239 4.2:+15538155 None:intergenic
CAGCTTTCAAATAACCATCT+GGG 0.525779 4.2:+15540657 None:intergenic
TTGGACAGATCTACCCAAAT+GGG 0.526655 4.2:-15538931 MS.gene023325:intron
TGAGCAAATACAATAGGAAG+TGG 0.526855 4.2:+15543054 None:intergenic
ATGGTACTTCCTATGAATAC+TGG 0.531481 4.2:-15542469 MS.gene023325:CDS
GCACCTCCTTCACATGGTCC+GGG 0.537138 4.2:+15538866 None:intergenic
TGCAAAGGGATCAGCTGTGT+GGG 0.540779 4.2:-15543031 MS.gene023325:CDS
TTCTTTGATCACTTCAAGTG+AGG 0.543995 4.2:+15539181 None:intergenic
TGGGAAGATGAAGAAGCGTT+GGG 0.548907 4.2:+15543444 None:intergenic
GATCACTTCAAGTGAGGCAA+TGG 0.551674 4.2:+15539187 None:intergenic
AATTGTGTCATGTGTTGACT+TGG 0.561328 4.2:+15538741 None:intergenic
TTCCCCGCACCTCCTTCACA+TGG 0.564937 4.2:+15538860 None:intergenic
ATCAGCTGTGTGGGATCCAG+AGG 0.565766 4.2:-15543022 MS.gene023325:CDS
TGTATAAAACCTGGACAGCA+TGG 0.573539 4.2:-15539734 MS.gene023325:CDS
CAAATACAATAGGAAGTGGA+TGG 0.580722 4.2:+15543058 None:intergenic
GTCAAATACTCAGCAAACAC+CGG 0.582762 4.2:+15542511 None:intergenic
GAATACTGGTGCTGAAGGTG+TGG 0.583184 4.2:-15542455 MS.gene023325:CDS
TAAAACCTGGACAGCATGGA+AGG 0.583742 4.2:-15539730 MS.gene023325:intron
ACCCCAGCTTCCCCTTGGAT+AGG 0.586113 4.2:+15541841 None:intergenic
ACCTATCCAAGGGGAAGCTG+GGG 0.586910 4.2:-15541842 MS.gene023325:intron
AGCTTTCAAATAACCATCTG+GGG 0.599511 4.2:+15540658 None:intergenic
GTGATGCTTTGTATAAAACC+TGG 0.600068 4.2:-15539743 MS.gene023325:CDS
CGGACCATGTGAAGGAGGTG+CGG 0.603381 4.2:-15538864 MS.gene023325:CDS
TAATTCAAAGCCTGATACAG+GGG 0.605478 4.2:+15538795 None:intergenic
GTTGAAGTTAGCAAGAAAGT+GGG 0.607885 4.2:-15542425 MS.gene023325:CDS
TTAATTCAAAGCCTGATACA+GGG 0.608427 4.2:+15538794 None:intergenic
AGAAGTTCGTCCAGATGTAG+TGG 0.615199 4.2:-15540537 MS.gene023325:intron
TGAAGAAGCGTTGGGTTGTG+TGG 0.618995 4.2:+15543452 None:intergenic
CACAACGATCACATGCACTA+GGG 0.624398 4.2:+15538147 None:intergenic
AATTTCCAGCACATCAGCGA+GGG 0.626318 4.2:+15538223 None:intergenic
GACCATGTGAAGGAGGTGCG+GGG 0.627725 4.2:-15538862 MS.gene023325:CDS
GCATTAAAGGACCAAAACCA+CGG 0.628989 4.2:+15542064 None:intergenic
TACCATATCATAACCAAACA+AGG 0.631313 4.2:+15542486 None:intergenic
ATGCAAAGGGATCAGCTGTG+TGG 0.641631 4.2:-15543032 MS.gene023325:CDS
ACAATACCCGGACCATGTGA+AGG 0.644513 4.2:-15538872 MS.gene023325:CDS
GCTTTCAAATAACCATCTGG+GGG 0.649011 4.2:+15540659 None:intergenic
TCTTACCTTATGCACAGTGG+GGG 0.652538 4.2:+15538706 None:intergenic
CTTTCTTACCTTATGCACAG+TGG 0.652810 4.2:+15538703 None:intergenic
CATTAAAGGACCAAAACCAC+GGG 0.654497 4.2:+15542065 None:intergenic
CCTATGAATACTGGTGCTGA+AGG 0.655355 4.2:-15542460 MS.gene023325:CDS
TTCTTACCTTATGCACAGTG+GGG 0.660148 4.2:+15538705 None:intergenic
GAAGATTCAGAAACAATACC+CGG 0.661569 4.2:-15538884 MS.gene023325:CDS
GACAGATCTACCCAAATGGG+AGG 0.666226 4.2:-15538928 MS.gene023325:intron
ATACTAGGGAAAGCTTTGGG+TGG 0.669588 4.2:-15539806 MS.gene023325:CDS
CCAAAATAAATGCAGCTATG+CGG 0.671952 4.2:+15541866 None:intergenic
AGATCAGGCAGACAGGCTGA+CGG 0.672284 4.2:-15542566 MS.gene023325:CDS
CATGCACTAGGGCCAGCTGG+AGG 0.674851 4.2:+15538158 None:intergenic
ATACCCGGACCATGTGAAGG+AGG 0.676758 4.2:-15538869 MS.gene023325:CDS
TCAGCTGTGTGGGATCCAGA+GGG 0.679081 4.2:-15543021 MS.gene023325:CDS
AAGAAGAGAGACTTGCTGAG+AGG 0.679464 4.2:-15539163 MS.gene023325:intron
TGTGACAATGAAGCTACCCG+TGG 0.679963 4.2:-15542081 MS.gene023325:CDS
CCTAGTGCATGTGATCGTTG+TGG 0.687700 4.2:-15538146 MS.gene023325:CDS
TTGAAGTTAGCAAGAAAGTG+GGG 0.692526 4.2:-15542424 MS.gene023325:CDS
AGTGCGGATGAGATCCAACA+AGG 0.696962 4.2:-15538254 MS.gene023325:CDS
CTTTCAAATAACCATCTGGG+GGG 0.711042 4.2:+15540660 None:intergenic
CAATTTCCAGCACATCAGCG+AGG 0.712817 4.2:+15538222 None:intergenic
CTTTCTTGCTAACTTCAACG+CGG 0.721978 4.2:+15542429 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATGTTATGAAAAA+TGG - chr4.2:15540820-15540839 MS.gene023325:intron 10.0%
!! AATTAATTGTTTATTAAAGA+AGG - chr4.2:15542354-15542373 MS.gene023325:intron 10.0%
!! ATATTAATGTTATGAAAAAT+GGG - chr4.2:15540821-15540840 MS.gene023325:intron 10.0%
!! TTGAATAAATTTATTTCATT+AGG - chr4.2:15542552-15542571 MS.gene023325:CDS 10.0%
!!! AAATATATTGATTTTTTATC+TGG - chr4.2:15538655-15538674 MS.gene023325:intron 10.0%
!!! AATAAGTATTCTTTTTTTTT+TGG + chr4.2:15539867-15539886 None:intergenic 10.0%
!!! ATTTTAATGAATGAAATTAT+CGG + chr4.2:15542332-15542351 None:intergenic 10.0%
!!! TTTATTAGTTTAATATATGA+AGG + chr4.2:15538375-15538394 None:intergenic 10.0%
!!! TTTTTTATTCCTTAATTTTT+GGG - chr4.2:15538970-15538989 MS.gene023325:intron 10.0%
!! AAAAATAAATAACCATTACA+AGG + chr4.2:15542233-15542252 None:intergenic 15.0%
!! AAACTATTATACTTCATAAA+TGG + chr4.2:15540657-15540676 None:intergenic 15.0%
!! ATAAGAATAGAAAATAGAAT+AGG + chr4.2:15540163-15540182 None:intergenic 15.0%
!! ATGATGAATAAATATAAATG+AGG + chr4.2:15543054-15543073 None:intergenic 15.0%
!! CAAAAATTAAGGAATAAAAA+AGG + chr4.2:15538971-15538990 None:intergenic 15.0%
!! TACAGAATAAAAAAGAAAAA+GGG + chr4.2:15541759-15541778 None:intergenic 15.0%
!! TCTGAACTTAAATTATTAAA+AGG + chr4.2:15541267-15541286 None:intergenic 15.0%
!! TTACAGAATAAAAAAGAAAA+AGG + chr4.2:15541760-15541779 None:intergenic 15.0%
!!! CTTTTTTATTCCTTAATTTT+TGG - chr4.2:15538969-15538988 MS.gene023325:intron 15.0%
!!! TTTAAAGCTTTAAGAATTTT+AGG + chr4.2:15539063-15539082 None:intergenic 15.0%
!!! TTTTAATAATTTAAGTTCAG+AGG - chr4.2:15541266-15541285 MS.gene023325:intron 15.0%
!!! TTTTCTTATATTATTATCAC+CGG - chr4.2:15538790-15538809 MS.gene023325:CDS 15.0%
!! AAGAAAGTTAAAGAAATTAG+TGG + chr4.2:15541814-15541833 None:intergenic 20.0%
!! AAGAAATTAGTGGTATAAAA+AGG + chr4.2:15541804-15541823 None:intergenic 20.0%
!! AATAAATATAAATGAGGCAA+TGG + chr4.2:15543048-15543067 None:intergenic 20.0%
!! AATAGAAAATAGAATCAGTT+AGG + chr4.2:15540158-15540177 None:intergenic 20.0%
!! AATTATTGAAATTGAAAGCT+AGG - chr4.2:15543142-15543161 MS.gene023325:intron 20.0%
!! AGGAAAAACTAGATATAATA+TGG + chr4.2:15541550-15541569 None:intergenic 20.0%
!! ATAGAAAATAGAATAGGTAA+AGG + chr4.2:15540530-15540549 None:intergenic 20.0%
!! ATAGAAAATAGAATCAGTTA+GGG + chr4.2:15540157-15540176 None:intergenic 20.0%
!! ATCAAGATATTACAACTATT+AGG + chr4.2:15539305-15539324 None:intergenic 20.0%
!! ATTCTGTTATTATGAAATGT+TGG - chr4.2:15540418-15540437 MS.gene023325:intron 20.0%
!! CAATAAAAAAATCAGTTTGA+CGG + chr4.2:15540793-15540812 None:intergenic 20.0%
!! CATACATAATATTACATTCT+CGG + chr4.2:15540684-15540703 None:intergenic 20.0%
!! GAAAAGTAACAGAAAAAAAA+AGG + chr4.2:15542403-15542422 None:intergenic 20.0%
!! GTGAAAAAAAAAACATAAGT+TGG + chr4.2:15541702-15541721 None:intergenic 20.0%
!! TAACGTCATATAAAAAAATG+TGG + chr4.2:15540948-15540967 None:intergenic 20.0%
!! TATAGTGAAAAATGAAAACA+AGG + chr4.2:15543117-15543136 None:intergenic 20.0%
!! TCTCATTTAAAAAATCCAAA+TGG + chr4.2:15539429-15539448 None:intergenic 20.0%
!! TGAATTAAGTGAAAAATTGA+AGG - chr4.2:15542870-15542889 MS.gene023325:intron 20.0%
!! TTAATCAGGTATAAATTGAA+CGG - chr4.2:15538689-15538708 MS.gene023325:intron 20.0%
!! TTTAAAAAAATCCATCCTAT+GGG - chr4.2:15542252-15542271 MS.gene023325:intron 20.0%
!!! AAAAAAAAACATAAGTTGGA+TGG + chr4.2:15541698-15541717 None:intergenic 20.0%
!!! AAGCATTATTTCTTTTATCT+AGG + chr4.2:15543266-15543285 None:intergenic 20.0%
!!! ATGACGTTATATTTTTTTAC+AGG - chr4.2:15540959-15540978 MS.gene023325:intron 20.0%
!!! ATTCTTTTATTGTGAAATGA+TGG - chr4.2:15540045-15540064 MS.gene023325:intron 20.0%
!!! TGGATTTTTTAAATGAGATT+CGG - chr4.2:15539431-15539450 MS.gene023325:intron 20.0%
!!! TTTGATTTGATTAAGTTGAA+AGG - chr4.2:15542131-15542150 MS.gene023325:CDS 20.0%
!!! TTTTAAAAAAATCCATCCTA+TGG - chr4.2:15542251-15542270 MS.gene023325:intron 20.0%
! AAAACAGAGAATATTATGGT+TGG - chr4.2:15541452-15541471 MS.gene023325:intron 25.0%
! AAATCCTAGACCAAAATATT+AGG + chr4.2:15543355-15543374 None:intergenic 25.0%
! AACTTAAGACATTGCTTAAA+TGG + chr4.2:15542981-15543000 None:intergenic 25.0%
! AATCATCAACACGTTATATT+TGG + chr4.2:15541033-15541052 None:intergenic 25.0%
! AATCCTAGACCAAAATATTA+GGG + chr4.2:15543354-15543373 None:intergenic 25.0%
! AATGATTTGATTACTGTGAA+TGG - chr4.2:15543230-15543249 MS.gene023325:intron 25.0%
! ACAAGAAAACAATAAACGAA+TGG + chr4.2:15541974-15541993 None:intergenic 25.0%
! ACAGAATATATAAGAGGTAA+AGG + chr4.2:15541148-15541167 None:intergenic 25.0%
! AGAGATACAGAATATATAAG+AGG + chr4.2:15541154-15541173 None:intergenic 25.0%
! ATCATACAAAGGAAACATAT+TGG + chr4.2:15539897-15539916 None:intergenic 25.0%
! ATCTCAGAAATTGCTTATAT+AGG - chr4.2:15540453-15540472 MS.gene023325:intron 25.0%
! ATTCTTTGTCAATGATTGTT+TGG + chr4.2:15538228-15538247 None:intergenic 25.0%
! GATAAAAGAAATAATGCTTC+TGG - chr4.2:15543267-15543286 MS.gene023325:intron 25.0%
! TCACAAAAAAGAGAAACTTA+TGG - chr4.2:15541718-15541737 MS.gene023325:intron 25.0%
! TCTCAGAAATTGCTTATATA+GGG - chr4.2:15540454-15540473 MS.gene023325:intron 25.0%
! TGGTAAAACAGAGAATATTA+TGG - chr4.2:15541448-15541467 MS.gene023325:intron 25.0%
! TTCATAAGCATAACTAGATT+AGG + chr4.2:15543180-15543199 None:intergenic 25.0%
! TTCTTTGTCAATGATTGTTT+GGG + chr4.2:15538227-15538246 None:intergenic 25.0%
!! ATCTAAGATATTGCTTATAG+AGG - chr4.2:15540080-15540099 MS.gene023325:intron 25.0%
!! TAAGTTGAAAGGTTTCAAAA+AGG - chr4.2:15542142-15542161 MS.gene023325:CDS 25.0%
!! TCTAAGATATTGCTTATAGA+GGG - chr4.2:15540081-15540100 MS.gene023325:intron 25.0%
!! TGTAAATGTCCCTAATATTT+TGG - chr4.2:15543342-15543361 MS.gene023325:intron 25.0%
!!! AAAGACACCATTTTTATTTC+TGG - chr4.2:15538309-15538328 MS.gene023325:intron 25.0%
!!! AAGACACCATTTTTATTTCT+GGG - chr4.2:15538310-15538329 MS.gene023325:intron 25.0%
!!! AATGTACCGTTTTTGAATTT+CGG - chr4.2:15540606-15540625 MS.gene023325:CDS 25.0%
!!! CTTTTTTTAATCACTCCATT+GGG - chr4.2:15538402-15538421 MS.gene023325:intron 25.0%
!!! GTCACTTGTTTTATCTTAAA+TGG - chr4.2:15539956-15539975 MS.gene023325:intron 25.0%
!!! GTTAGTCTTATATATTGATC+TGG - chr4.2:15542620-15542639 MS.gene023325:intron 25.0%
!!! TCTTAAAGCTTTAAAAGATC+AGG - chr4.2:15539068-15539087 MS.gene023325:intron 25.0%
!!! TCTTTTTTTAATCACTCCAT+TGG - chr4.2:15538401-15538420 MS.gene023325:intron 25.0%
!!! TTCTTTTGATTCAGATACTA+GGG - chr4.2:15541829-15541848 MS.gene023325:intron 25.0%
!!! TTGCATTTTTCAAAATTGTC+CGG - chr4.2:15539328-15539347 MS.gene023325:intron 25.0%
!!! TTTCTTTTGATTCAGATACT+AGG - chr4.2:15541828-15541847 MS.gene023325:intron 25.0%
!!! TTTTTTGTAGCTATACCATT+TGG - chr4.2:15539411-15539430 MS.gene023325:intron 25.0%
AACAGAACAGAAGAAAACAA+GGG + chr4.2:15538282-15538301 None:intergenic 30.0%
AAGAAATCAATGCAAAAGTG+AGG + chr4.2:15542296-15542315 None:intergenic 30.0%
AAGCAAATATTTAGCATCAC+CGG + chr4.2:15539350-15539369 None:intergenic 30.0%
AAGGGAAAGATATATACTTG+TGG + chr4.2:15538264-15538283 None:intergenic 30.0%
AGGGAAAGATATATACTTGT+GGG + chr4.2:15538263-15538282 None:intergenic 30.0%
AGTGAAAAATTGAAGGATAG+AGG - chr4.2:15542877-15542896 MS.gene023325:intron 30.0%
ATGTTTATAGCGAAGTACAA+GGG + chr4.2:15541185-15541204 None:intergenic 30.0%
ATTGCTGATGAAATACAAAC+TGG - chr4.2:15541050-15541069 MS.gene023325:intron 30.0%
ATTGTATTTGCTCATGCAAA+GGG - chr4.2:15538604-15538623 MS.gene023325:intron 30.0%
ATTTGATTACTGTGAATGGT+AGG - chr4.2:15543234-15543253 MS.gene023325:intron 30.0%
CAATAGTTGTCAAACATAGA+AGG - chr4.2:15541994-15542013 MS.gene023325:intron 30.0%
CAATGGTGAAAGTTACAAAT+AGG + chr4.2:15543031-15543050 None:intergenic 30.0%
CAGATATATAAGAGATATGC+TGG + chr4.2:15540568-15540587 None:intergenic 30.0%
CATAGTTATACCTCATTGTT+GGG + chr4.2:15539270-15539289 None:intergenic 30.0%
CTTGCAAAGACTAAATCATA+TGG + chr4.2:15540302-15540321 None:intergenic 30.0%
GAAAAAAATTCCCAACAATG+AGG - chr4.2:15539257-15539276 MS.gene023325:intron 30.0%
GAATCGTATGATATGGTTAA+AGG + chr4.2:15541399-15541418 None:intergenic 30.0%
GTAACACCGAAATTCAAAAA+CGG + chr4.2:15540615-15540634 None:intergenic 30.0%
GTCTTGATTTAACCTTGTAA+TGG - chr4.2:15542218-15542237 MS.gene023325:intron 30.0%
GTTAAATCAAGACATGCAAA+CGG + chr4.2:15542211-15542230 None:intergenic 30.0%
TACCATATCATAACCAAACA+AGG + chr4.2:15539166-15539185 None:intergenic 30.0%
TAGCATTAGTAAACAGGATT+TGG + chr4.2:15538940-15538959 None:intergenic 30.0%
TATGAAGGTTGAATAGCTTA+AGG + chr4.2:15538360-15538379 None:intergenic 30.0%
TATTGTATTTGCTCATGCAA+AGG - chr4.2:15538603-15538622 MS.gene023325:intron 30.0%
TCAATATATTTGTTTCCCTC+TGG + chr4.2:15538646-15538665 None:intergenic 30.0%
TCAGCAAAAGTAAATTGACA+CGG + chr4.2:15539469-15539488 None:intergenic 30.0%
TCATAGTTATACCTCATTGT+TGG + chr4.2:15539271-15539290 None:intergenic 30.0%
TGATATGGTTAAAGGAAGTA+AGG + chr4.2:15541391-15541410 None:intergenic 30.0%
TGTGGAAAAGATGATATGTT+TGG + chr4.2:15540930-15540949 None:intergenic 30.0%
TTAATTCAAAGCCTGATACA+GGG + chr4.2:15542858-15542877 None:intergenic 30.0%
TTTCTATTTCCTTTGTGAAC+TGG - chr4.2:15538899-15538918 MS.gene023325:CDS 30.0%
TTTGCATGAGCAAATACAAT+AGG + chr4.2:15538604-15538623 None:intergenic 30.0%
! ATGATTTAGTCTTTGCAAGA+AGG - chr4.2:15540303-15540322 MS.gene023325:intron 30.0%
! CACCAAAATCAACTTTAAGA+TGG + chr4.2:15539615-15539634 None:intergenic 30.0%
! CTTGTACTTTTGTGTTTTAC+TGG - chr4.2:15541428-15541447 MS.gene023325:intron 30.0%
! TATTCTGTAACCTTTTTCTG+AGG - chr4.2:15541770-15541789 MS.gene023325:intron 30.0%
! TCGTCTTTTCCCAAAAATTA+AGG + chr4.2:15538982-15539001 None:intergenic 30.0%
! TTTCTACAATGATCGTTTTC+CGG - chr4.2:15539119-15539138 MS.gene023325:intron 30.0%
!! AAAGGAAGTAAGGTATCTTT+TGG + chr4.2:15541381-15541400 None:intergenic 30.0%
!! TGTCAATTTACTTTTGCTGA+TGG - chr4.2:15539469-15539488 MS.gene023325:intron 30.0%
!!! AGTGTATGTCATTTTTCTTC+AGG - chr4.2:15539026-15539045 MS.gene023325:intron 30.0%
!!! ATAGAGTTACTTTTTTCCTG+AGG - chr4.2:15540260-15540279 MS.gene023325:intron 30.0%
!!! GTGTATGTCATTTTTCTTCA+GGG - chr4.2:15539027-15539046 MS.gene023325:intron 30.0%
!!! TACAAGTCTTGTGACTTTTT+TGG - chr4.2:15540500-15540519 MS.gene023325:intron 30.0%
!!! TTATTTTGGAACCTATCCAA+GGG - chr4.2:15539797-15539816 MS.gene023325:CDS 30.0%
!!! TTTATTTTGGAACCTATCCA+AGG - chr4.2:15539796-15539815 MS.gene023325:CDS 30.0%
AAGCAGTAGCATTAGTAAAC+AGG + chr4.2:15538946-15538965 None:intergenic 35.0%
AAGTAACCTAATCCTTTGAG+AGG + chr4.2:15543316-15543335 None:intergenic 35.0%
ACAGCTTTCAAATAACCATC+TGG + chr4.2:15540996-15541015 None:intergenic 35.0%
AGCTTTCAAATAACCATCTG+GGG + chr4.2:15540994-15541013 None:intergenic 35.0%
AGTTTCTGATGCATATTCAC+AGG + chr4.2:15541579-15541598 None:intergenic 35.0%
ATGGTACTTCCTATGAATAC+TGG - chr4.2:15539180-15539199 MS.gene023325:CDS 35.0%
ATTAGATCATGAACGAAAGC+CGG + chr4.2:15540747-15540766 None:intergenic 35.0%
CAAAAACGGTACATTTCACA+TGG + chr4.2:15540601-15540620 None:intergenic 35.0%
CAAATACAATAGGAAGTGGA+TGG + chr4.2:15538594-15538613 None:intergenic 35.0%
CAATAAACTCCAGTTCACAA+AGG + chr4.2:15538911-15538930 None:intergenic 35.0%
CAGCTTTCAAATAACCATCT+GGG + chr4.2:15540995-15541014 None:intergenic 35.0%
CCAAAATAAATGCAGCTATG+CGG + chr4.2:15539786-15539805 None:intergenic 35.0%
CTAGGTAGATGCATTTAACT+AGG - chr4.2:15541653-15541672 MS.gene023325:intron 35.0%
CTTAATTCAAAGCCTGATAC+AGG + chr4.2:15542859-15542878 None:intergenic 35.0%
GAACAGAACAGAAGAAAACA+AGG + chr4.2:15538283-15538302 None:intergenic 35.0%
GAAGATTCAGAAACAATACC+CGG - chr4.2:15542765-15542784 MS.gene023325:intron 35.0%
GAGAGACCCAGAAATAAAAA+TGG + chr4.2:15538319-15538338 None:intergenic 35.0%
GATGTTTATAGCGAAGTACA+AGG + chr4.2:15541186-15541205 None:intergenic 35.0%
GGAAACTAAACCTCAGAAAA+AGG + chr4.2:15541783-15541802 None:intergenic 35.0%
GTGATGCTTTGTATAAAACC+TGG - chr4.2:15541906-15541925 MS.gene023325:intron 35.0%
GTTGAAGTTAGCAAGAAAGT+GGG - chr4.2:15539224-15539243 MS.gene023325:CDS 35.0%
TAAAAGTAATCCTTGCAGTG+CGG - chr4.2:15543379-15543398 MS.gene023325:intron 35.0%
TAATGTGAGAGCTATTCTAC+AGG + chr4.2:15540877-15540896 None:intergenic 35.0%
TAATTCAAAGCCTGATACAG+GGG + chr4.2:15542857-15542876 None:intergenic 35.0%
TATAGCTAGTTGAGTACTTC+AGG - chr4.2:15543074-15543093 MS.gene023325:intron 35.0%
TCTATTGTGATACATGAGCA+CGG + chr4.2:15540351-15540370 None:intergenic 35.0%
TGAACTGGAGTTTATTGTTG+TGG - chr4.2:15538914-15538933 MS.gene023325:CDS 35.0%
TGAGCAAATACAATAGGAAG+TGG + chr4.2:15538598-15538617 None:intergenic 35.0%
TGCAACTGATGTCTTAGTAT+TGG - chr4.2:15542699-15542718 MS.gene023325:intron 35.0%
TGCATATTCACAGGAATAGA+AGG + chr4.2:15541570-15541589 None:intergenic 35.0%
TTACAATCCAAACAACCCAA+TGG + chr4.2:15538420-15538439 None:intergenic 35.0%
TTCTTTGATCACTTCAAGTG+AGG + chr4.2:15542471-15542490 None:intergenic 35.0%
TTGAAGTTAGCAAGAAAGTG+GGG - chr4.2:15539225-15539244 MS.gene023325:CDS 35.0%
TTGAGTTCACATGCACATTA+AGG - chr4.2:15542999-15543018 MS.gene023325:CDS 35.0%
TTGCGAAGAATCGTATGATA+TGG + chr4.2:15541406-15541425 None:intergenic 35.0%
TTTCTTACCTTATGCACAGT+GGG + chr4.2:15542948-15542967 None:intergenic 35.0%
! AAAACATAAGTTGGATGGTC+AGG + chr4.2:15541693-15541712 None:intergenic 35.0%
! AACTAGACATCTTTTTCCTC+AGG + chr4.2:15540279-15540298 None:intergenic 35.0%
! AATCCTTTGAGAGGACAAAA+AGG + chr4.2:15543307-15543326 None:intergenic 35.0%
! TACTTTTGGTGGAAATCCAT+TGG - chr4.2:15542427-15542446 MS.gene023325:CDS 35.0%
! TTGATGCGAAGATTTTACAG+AGG - chr4.2:15538154-15538173 MS.gene023325:CDS 35.0%
! TTTTGTCCTCTCAAAGGATT+AGG - chr4.2:15543307-15543326 MS.gene023325:intron 35.0%
!! AAATCAACTTTAAGATGGCC+TGG + chr4.2:15539610-15539629 None:intergenic 35.0%
!! AATTGTGTCATGTGTTGACT+TGG + chr4.2:15542911-15542930 None:intergenic 35.0%
!! AGCCTTGTTTGGTTATGATA+TGG - chr4.2:15539161-15539180 MS.gene023325:intron 35.0%
!! GGCCATCTTAAAGTTGATTT+TGG - chr4.2:15539610-15539629 MS.gene023325:intron 35.0%
!! TACAAGTCTTGTGACTTGTT+TGG - chr4.2:15540127-15540146 MS.gene023325:intron 35.0%
!!! GGCTTCATCTTTTTCAACAT+TGG + chr4.2:15543458-15543477 None:intergenic 35.0%
!!! TATTTTGGAACCTATCCAAG+GGG - chr4.2:15539798-15539817 MS.gene023325:CDS 35.0%
!!! TGTCCCTAATATTTTGGTCT+AGG - chr4.2:15543348-15543367 MS.gene023325:intron 35.0%
AAACCATCTTCATTCGTCTG+AGG + chr4.2:15538870-15538889 None:intergenic 40.0%
AACAAAACTCCACCTTCTGT+TGG - chr4.2:15542079-15542098 MS.gene023325:CDS 40.0%
AACATGAGACAATAAGAGCC+TGG + chr4.2:15539504-15539523 None:intergenic 40.0%
AACCATCTTCATTCGTCTGA+GGG + chr4.2:15538869-15538888 None:intergenic 40.0%
AAGACCAATCAAGGGGTTTA+AGG + chr4.2:15542043-15542062 None:intergenic 40.0%
ACACCATAAGACCAATCAAG+GGG + chr4.2:15542050-15542069 None:intergenic 40.0%
ACGGATCTTGCTAATTACCA+AGG - chr4.2:15538708-15538727 MS.gene023325:intron 40.0%
AGACCAATCAAGGGGTTTAA+GGG + chr4.2:15542042-15542061 None:intergenic 40.0%
AGACTTCTGATTCCAACAGA+AGG + chr4.2:15542094-15542113 None:intergenic 40.0%
AGCAAGAACAGGAAAAATGC+TGG - chr4.2:15541076-15541095 MS.gene023325:intron 40.0%
AGCTTGAAACTGACACTACA+TGG - chr4.2:15541325-15541344 MS.gene023325:intron 40.0%
ATTGGACAGATCTACCCAAA+TGG - chr4.2:15542717-15542736 MS.gene023325:intron 40.0%
CACACCATAAGACCAATCAA+GGG + chr4.2:15542051-15542070 None:intergenic 40.0%
CAGATACTAGGGAAAGCTTT+GGG - chr4.2:15541840-15541859 MS.gene023325:intron 40.0%
CATCGATATCTCAAAGAGAG+TGG + chr4.2:15542670-15542689 None:intergenic 40.0%
CATTAAAGGACCAAAACCAC+GGG + chr4.2:15539587-15539606 None:intergenic 40.0%
CGTTGAAGTTAGCAAGAAAG+TGG - chr4.2:15539223-15539242 MS.gene023325:CDS 40.0%
CTATGCGGTACATCATACAA+AGG + chr4.2:15539908-15539927 None:intergenic 40.0%
CTCTAATCTAGAAACCTGCT+AGG + chr4.2:15540226-15540245 None:intergenic 40.0%
CTTGTCTGAGTCTTAGTCAA+TGG - chr4.2:15541597-15541616 MS.gene023325:intron 40.0%
CTTTCAAATAACCATCTGGG+GGG + chr4.2:15540992-15541011 None:intergenic 40.0%
CTTTCTTACCTTATGCACAG+TGG + chr4.2:15542949-15542968 None:intergenic 40.0%
CTTTCTTGCTAACTTCAACG+CGG + chr4.2:15539223-15539242 None:intergenic 40.0%
GACACTACATGGCAAGAAAT+AGG - chr4.2:15541336-15541355 MS.gene023325:intron 40.0%
GCAATTTCACTAGTTCCCAT+AGG + chr4.2:15542270-15542289 None:intergenic 40.0%
GCATTAAAGGACCAAAACCA+CGG + chr4.2:15539588-15539607 None:intergenic 40.0%
GCTCTTATTGTCTCATGTTG+TGG - chr4.2:15539505-15539524 MS.gene023325:intron 40.0%
GCTTTCAAATAACCATCTGG+GGG + chr4.2:15540993-15541012 None:intergenic 40.0%
GTCAAATACTCAGCAAACAC+CGG + chr4.2:15539141-15539160 None:intergenic 40.0%
GTCATTCCGGTCTAAATTGT+CGG + chr4.2:15538746-15538765 None:intergenic 40.0%
GTTAGACAACGAGTTCTATG+CGG + chr4.2:15539923-15539942 None:intergenic 40.0%
TAGAAACCTGCTAGGTTTCA+GGG + chr4.2:15540218-15540237 None:intergenic 40.0%
TCACACCATAAGACCAATCA+AGG + chr4.2:15542052-15542071 None:intergenic 40.0%
TCAGATACTAGGGAAAGCTT+TGG - chr4.2:15541839-15541858 MS.gene023325:intron 40.0%
TGAGATCCAACAAGGTTCTA+AGG - chr4.2:15543403-15543422 MS.gene023325:intron 40.0%
TGCATTTAACTAGGTACCAC+TGG - chr4.2:15541662-15541681 MS.gene023325:intron 40.0%
TGCTTCAATGGTCGTACATT+GGG - chr4.2:15539529-15539548 MS.gene023325:intron 40.0%
TGTATAAAACCTGGACAGCA+TGG - chr4.2:15541915-15541934 MS.gene023325:intron 40.0%
TTAAGATGGCCTGGCATTAA+AGG + chr4.2:15539601-15539620 None:intergenic 40.0%
TTCTTACCTTATGCACAGTG+GGG + chr4.2:15542947-15542966 None:intergenic 40.0%
TTGGACAGATCTACCCAAAT+GGG - chr4.2:15542718-15542737 MS.gene023325:intron 40.0%
TTTCACTAGTTCCCATAGGA+TGG + chr4.2:15542266-15542285 None:intergenic 40.0%
TTTGTGAATCCTTGTGTCCA+TGG - chr4.2:15542185-15542204 MS.gene023325:intron 40.0%
! AACATGTGTCAGTGTCATTC+CGG + chr4.2:15538759-15538778 None:intergenic 40.0%
! AATCACTCCATTGGGTTGTT+TGG - chr4.2:15538410-15538429 MS.gene023325:intron 40.0%
! CATCCTTTTTGTCCTCTCAA+AGG - chr4.2:15543301-15543320 MS.gene023325:intron 40.0%
! CCGCATAGCTGCATTTATTT+TGG - chr4.2:15539783-15539802 MS.gene023325:CDS 40.0%
! CTTTAAAAGATCAGGCAGAC+AGG - chr4.2:15539076-15539095 MS.gene023325:intron 40.0%
! GCGCTCGAGAAAATTTTCAA+AGG - chr4.2:15539643-15539662 MS.gene023325:intron 40.0%
! TACAGAGGAACCAGAACTTT+TGG - chr4.2:15538169-15538188 MS.gene023325:CDS 40.0%
! TTAGTCTTTGCAAGAAGGAC+TGG - chr4.2:15540308-15540327 MS.gene023325:intron 40.0%
!! AAAAATGCTGGCTTGTGAGT+GGG - chr4.2:15541088-15541107 MS.gene023325:intron 40.0%
!! AAACCCCTTGATTGGTCTTA+TGG - chr4.2:15542044-15542063 MS.gene023325:CDS 40.0%
!! CAAACTGGATTAGCAAGAAC+AGG - chr4.2:15541065-15541084 MS.gene023325:intron 40.0%
!! GAGTATTTGACAGCCTTGTT+TGG - chr4.2:15539150-15539169 MS.gene023325:intron 40.0%
AACATCATCCTGTCGTCACA+CGG - chr4.2:15541200-15541219 MS.gene023325:intron 45.0%
AATTTCCAGCACATCAGCGA+GGG + chr4.2:15543429-15543448 None:intergenic 45.0%
AGAAACCTGCTAGGTTTCAG+GGG + chr4.2:15540217-15540236 None:intergenic 45.0%
AGAAGTTCGTCCAGATGTAG+TGG - chr4.2:15541112-15541131 MS.gene023325:intron 45.0%
CACAACGATCACATGCACTA+GGG + chr4.2:15543505-15543524 None:intergenic 45.0%
CCATTTGCAAGTATGCAGCT+AGG - chr4.2:15541635-15541654 MS.gene023325:intron 45.0%
CCTAGCTGCATACTTGCAAA+TGG + chr4.2:15541638-15541657 None:intergenic 45.0%
CCTTCAGCACCAGTATTCAT+AGG + chr4.2:15539192-15539211 None:intergenic 45.0%
CTAGAAACCTGCTAGGTTTC+AGG + chr4.2:15540219-15540238 None:intergenic 45.0%
CTGCTTCAATGGTCGTACAT+TGG - chr4.2:15539528-15539547 MS.gene023325:intron 45.0%
CTTCTGATTCCAACAGAAGG+TGG + chr4.2:15542091-15542110 None:intergenic 45.0%
GAAAGTTTGTCCCCTGTATC+AGG - chr4.2:15542844-15542863 MS.gene023325:intron 45.0%
GATCACTTCAAGTGAGGCAA+TGG + chr4.2:15542465-15542484 None:intergenic 45.0%
TAAAACCTGGACAGCATGGA+AGG - chr4.2:15541919-15541938 MS.gene023325:intron 45.0%
TCATGTTGTGGCTGCTTCAA+TGG - chr4.2:15539517-15539536 MS.gene023325:intron 45.0%
TCTTACCTTATGCACAGTGG+GGG + chr4.2:15542946-15542965 None:intergenic 45.0%
TGAACACCAACCACTACATC+TGG + chr4.2:15541125-15541144 None:intergenic 45.0%
TGGCTACTCTGCAGTTAATC+AGG - chr4.2:15538675-15538694 MS.gene023325:intron 45.0%
TGTGACAGTCCATCTTTGAC+CGG - chr4.2:15540725-15540744 MS.gene023325:intron 45.0%
TGTGGCAACACCAAAAGTTC+TGG + chr4.2:15538182-15538201 None:intergenic 45.0%
TTAAACCTTCCATGCTGTCC+AGG + chr4.2:15541927-15541946 None:intergenic 45.0%
TTTACTAACCGTGTGACGAC+AGG + chr4.2:15541211-15541230 None:intergenic 45.0%
! AATGAAGCTACCCGTGGTTT+TGG - chr4.2:15539574-15539593 MS.gene023325:intron 45.0%
! CCTATGAATACTGGTGCTGA+AGG - chr4.2:15539189-15539208 MS.gene023325:CDS 45.0%
! CCTTTTTCTGCAGTTCAGCA+GGG + chr4.2:15539760-15539779 None:intergenic 45.0%
! GTACTTCAGGTTATGCGTCT+TGG - chr4.2:15543087-15543106 MS.gene023325:intron 45.0%
! TCCTTTTTCTGCAGTTCAGC+AGG + chr4.2:15539761-15539780 None:intergenic 45.0%
! TGCTGATGGAAACTTGTTCC+AGG - chr4.2:15539483-15539502 MS.gene023325:intron 45.0%
! TTGGGAAGATGAAGAAGCGT+TGG + chr4.2:15538209-15538228 None:intergenic 45.0%
!! AAGAAGAGAGACTTGCTGAG+AGG - chr4.2:15542486-15542505 MS.gene023325:CDS 45.0%
!! ATACTAGGGAAAGCTTTGGG+TGG - chr4.2:15541843-15541862 MS.gene023325:CDS 45.0%
!! GAAAAATGCTGGCTTGTGAG+TGG - chr4.2:15541087-15541106 MS.gene023325:intron 45.0%
!! GGTTTTGGTCCTTTAATGCC+AGG - chr4.2:15539589-15539608 MS.gene023325:intron 45.0%
!! GTAGCACCGACAATTTAGAC+CGG - chr4.2:15538737-15538756 MS.gene023325:CDS 45.0%
!! TGGGAAGATGAAGAAGCGTT+GGG + chr4.2:15538208-15538227 None:intergenic 45.0%
AACCTATCCAAGGGGAAGCT+GGG - chr4.2:15539806-15539825 MS.gene023325:CDS 50.0%
ACAATACCCGGACCATGTGA+AGG - chr4.2:15542777-15542796 MS.gene023325:intron 50.0%
AGTGCGGATGAGATCCAACA+AGG - chr4.2:15543395-15543414 MS.gene023325:intron 50.0%
ATGCAAAGGGATCAGCTGTG+TGG - chr4.2:15538617-15538636 MS.gene023325:intron 50.0%
CAAATGGGAGGTGAGCTTCT+CGG - chr4.2:15542733-15542752 MS.gene023325:intron 50.0%
CAATTTCCAGCACATCAGCG+AGG + chr4.2:15543430-15543449 None:intergenic 50.0%
CCAATCAAGGGGTTTAAGGG+CGG + chr4.2:15542039-15542058 None:intergenic 50.0%
CCACAACGATCACATGCACT+AGG + chr4.2:15543506-15543525 None:intergenic 50.0%
CCCTGCTGAACTGCAGAAAA+AGG - chr4.2:15539757-15539776 MS.gene023325:CDS 50.0%
CCTAGTGCATGTGATCGTTG+TGG - chr4.2:15543503-15543522 MS.gene023325:CDS 50.0%
CGATACAGACATGCTGACAC+CGG + chr4.2:15538812-15538831 None:intergenic 50.0%
GAAACCTGCTAGGTTTCAGG+GGG + chr4.2:15540216-15540235 None:intergenic 50.0%
GAACGAAAGCCGGTCAAAGA+TGG + chr4.2:15540737-15540756 None:intergenic 50.0%
GACAGATCTACCCAAATGGG+AGG - chr4.2:15542721-15542740 MS.gene023325:intron 50.0%
GAGAAGCTCACCTCCCATTT+GGG + chr4.2:15542734-15542753 None:intergenic 50.0%
GTCCCTCAGACGAATGAAGA+TGG - chr4.2:15538864-15538883 MS.gene023325:CDS 50.0%
GTTCGTCCAGATGTAGTGGT+TGG - chr4.2:15541116-15541135 MS.gene023325:intron 50.0%
TCAAGACATGCAAACGGCCA+TGG + chr4.2:15542205-15542224 None:intergenic 50.0%
TCTGCAAGAACTGCGCTAAC+TGG + chr4.2:15541879-15541898 None:intergenic 50.0%
TGCAAAGGGATCAGCTGTGT+GGG - chr4.2:15538618-15538637 MS.gene023325:intron 50.0%
TGTGACAATGAAGCTACCCG+TGG - chr4.2:15539568-15539587 MS.gene023325:intron 50.0%
! CGGTGTCAGCATGTCTGTAT+CGG - chr4.2:15538810-15538829 MS.gene023325:CDS 50.0%
! GAATACTGGTGCTGAAGGTG+TGG - chr4.2:15539194-15539213 MS.gene023325:CDS 50.0%
! GTCTGTATCGGTGCTTCGTA+AGG - chr4.2:15538822-15538841 MS.gene023325:CDS 50.0%
!! GTCGGTGCTACATAAAGCCT+TGG + chr4.2:15538728-15538747 None:intergenic 50.0%
!! TGAAGAAGCGTTGGGTTGTG+TGG + chr4.2:15538200-15538219 None:intergenic 50.0%
AAAGATGCTGCTCCTCCAGC+TGG - chr4.2:15543479-15543498 MS.gene023325:CDS 55.0%
AACATACCCCAGCTTCCCCT+TGG + chr4.2:15539816-15539835 None:intergenic 55.0%
ACCTATCCAAGGGGAAGCTG+GGG - chr4.2:15539807-15539826 MS.gene023325:CDS 55.0%
AGATCAGGCAGACAGGCTGA+CGG - chr4.2:15539083-15539102 MS.gene023325:intron 55.0%
ATACCCGGACCATGTGAAGG+AGG - chr4.2:15542780-15542799 MS.gene023325:intron 55.0%
ATCAGCTGTGTGGGATCCAG+AGG - chr4.2:15538627-15538646 MS.gene023325:intron 55.0%
CAGGTGAAAATCCCCCCAGA+TGG - chr4.2:15540978-15540997 MS.gene023325:intron 55.0%
CCGCCCTTAAACCCCTTGAT+TGG - chr4.2:15542036-15542055 MS.gene023325:CDS 55.0%
CGAGAAGCTCACCTCCCATT+TGG + chr4.2:15542735-15542754 None:intergenic 55.0%
CGAGGGCCTTAGAACCTTGT+TGG + chr4.2:15543412-15543431 None:intergenic 55.0%
CGGGGAAGAGGACTGTTCAT+TGG - chr4.2:15542805-15542824 MS.gene023325:intron 55.0%
CGTTGTGGTCGAGTCGTGTA+TGG - chr4.2:15543518-15543537 MS.gene023325:CDS 55.0%
GAACCTATCCAAGGGGAAGC+TGG - chr4.2:15539805-15539824 MS.gene023325:CDS 55.0%
GGATGGTCAGGTCTATCCAG+TGG + chr4.2:15541681-15541700 None:intergenic 55.0%
TCACTCCCCCACTGTGCATA+AGG - chr4.2:15542938-15542957 MS.gene023325:intron 55.0%
TCAGCTGTGTGGGATCCAGA+GGG - chr4.2:15538628-15538647 MS.gene023325:intron 55.0%
TGAGGCAATGGCAACTGCAC+TGG + chr4.2:15542453-15542472 None:intergenic 55.0%
TGCAAACGGCCATGGACACA+AGG + chr4.2:15542197-15542216 None:intergenic 55.0%
TGGATCTCATCCGCACTGCA+AGG + chr4.2:15543392-15543411 None:intergenic 55.0%
TTCTCCCCCTGAAACCTAGC+AGG - chr4.2:15540209-15540228 MS.gene023325:intron 55.0%
! ATGGCAACTGCACTGGCCAA+TGG + chr4.2:15542446-15542465 None:intergenic 55.0%
! GCTGGAGGAGCAGCATCTTT+TGG + chr4.2:15543479-15543498 None:intergenic 55.0%
!! CTAGGGAAAGCTTTGGGTGG+AGG - chr4.2:15541846-15541865 MS.gene023325:CDS 55.0%
ACCCCAGCTTCCCCTTGGAT+AGG + chr4.2:15539811-15539830 None:intergenic 60.0%
CGCACCTCCTTCACATGGTC+CGG + chr4.2:15542787-15542806 None:intergenic 60.0%
CGGACCATGTGAAGGAGGTG+CGG - chr4.2:15542785-15542804 MS.gene023325:intron 60.0%
GCACCTCCTTCACATGGTCC+GGG + chr4.2:15542786-15542805 None:intergenic 60.0%
TAAGGCCCTCGCTGATGTGC+TGG - chr4.2:15543421-15543440 MS.gene023325:CDS 60.0%
TCACATGCACTAGGGCCAGC+TGG + chr4.2:15543497-15543516 None:intergenic 60.0%
TTCCCCGCACCTCCTTCACA+TGG + chr4.2:15542792-15542811 None:intergenic 60.0%
! GACCATGTGAAGGAGGTGCG+GGG - chr4.2:15542787-15542806 MS.gene023325:intron 60.0%
! GGACCATGTGAAGGAGGTGC+GGG - chr4.2:15542786-15542805 MS.gene023325:intron 60.0%
CATGCACTAGGGCCAGCTGG+AGG + chr4.2:15543494-15543513 None:intergenic 65.0%
! GTGAAGGAGGTGCGGGGAAG+AGG - chr4.2:15542793-15542812 MS.gene023325:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 15538127 15543544 15538127 ID=MS.gene023325
chr4.2 mRNA 15538127 15543544 15538127 ID=MS.gene023325.t1;Parent=MS.gene023325
chr4.2 exon 15543405 15543544 15543405 ID=MS.gene023325.t1.exon1;Parent=MS.gene023325.t1
chr4.2 CDS 15543405 15543544 15543405 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15542975 15543083 15542975 ID=MS.gene023325.t1.exon2;Parent=MS.gene023325.t1
chr4.2 CDS 15542975 15543083 15542975 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15542393 15542623 15542393 ID=MS.gene023325.t1.exon3;Parent=MS.gene023325.t1
chr4.2 CDS 15542393 15542623 15542393 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15542007 15542166 15542007 ID=MS.gene023325.t1.exon4;Parent=MS.gene023325.t1
chr4.2 CDS 15542007 15542166 15542007 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15541843 15541898 15541843 ID=MS.gene023325.t1.exon5;Parent=MS.gene023325.t1
chr4.2 CDS 15541843 15541898 15541843 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15540538 15540690 15540538 ID=MS.gene023325.t1.exon6;Parent=MS.gene023325.t1
chr4.2 CDS 15540538 15540690 15540538 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15539731 15539828 15539731 ID=MS.gene023325.t1.exon7;Parent=MS.gene023325.t1
chr4.2 CDS 15539731 15539828 15539731 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15539164 15539244 15539164 ID=MS.gene023325.t1.exon8;Parent=MS.gene023325.t1
chr4.2 CDS 15539164 15539244 15539164 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15538712 15538945 15538712 ID=MS.gene023325.t1.exon9;Parent=MS.gene023325.t1
chr4.2 CDS 15538712 15538945 15538712 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
chr4.2 exon 15538127 15538274 15538127 ID=MS.gene023325.t1.exon10;Parent=MS.gene023325.t1
chr4.2 CDS 15538127 15538274 15538127 ID=cds.MS.gene023325.t1;Parent=MS.gene023325.t1
Gene Sequence

>MS.gene023325

ATGGCTTCAACAAGACAAGTACAGTGTTTGATGCGAAGATTTTACAGAGGAACCAGAACTTTTGGTGTTGCCACACAACCCAACGCTTCTTCATCTTCCCAAACAATCATTGACAAAGAATTTCAACACAGTGCCCACAAGTATATATCTTTCCCTTGTTTTCTTCTGTTCTGTTCTGTTTTAAAGACACCATTTTTATTTCTGGGTCTCTCTTCTTTTCTCATTCATCACCTTAAGCTATTCAACCTTCATATATTAAACTAATAAATCATAATCTTTTTTTAATCACTCCATTGGGTTGTTTGGATTGTAAGCTAACTTAAAAATACACTCTTTCTTTGTTATGTGAATATTCAGTGTTTTTTTTTTTTTTTTTTTTTTTAATTTGTTGAAGTTTTCATTGAGTTTAATTGATTGTTTAAGTTGATGTGTTGAAATAATCTTTTCTGTTTGATTTGCAGTTACCATCCACTTCCTATTGTATTTGCTCATGCAAAGGGATCAGCTGTGTGGGATCCAGAGGGAAACAAATATATTGATTTTTTATCTGGCTACTCTGCAGTTAATCAGGTATAAATTGAACGGATCTTGCTAATTACCAAGGCTTTATGTAGCACCGACAATTTAGACCGGAATGACACTGACACATGTTGTTACATTCAATTTTCTTATATTATTATCACCGGTGTCAGCATGTCTGTATCGGTGCTTCGTAAGGATTTTGCTAAATAATAATAGTCCCTCAGACGAATGAAGATGGTTTCTATACACTTTTCTATTTCCTTTGTGAACTGGAGTTTATTGTTGTGGCCAAATCCTGTTTACTAATGCTACTGCTTTTCCTTTTTTATTCCTTAATTTTTGGGAAAAGACGATTGCTTAGAATTTGAAATGACTCGAGTGTATGTCATTTTTCTTCAGGGACATTGTCATCCTAAAATTCTTAAAGCTTTAAAAGATCAGGCAGACAGGCTGACGGTGAGCTCACGAGCTTTCTACAATGATCGTTTTCCGGTGTTTGCTGAGTATTTGACAGCCTTGTTTGGTTATGATATGGTACTTCCTATGAATACTGGTGCTGAAGGTGTGGAAACCGCGTTGAAGTTAGCAAGAAAGTGGGGTTATGAAAAGAAAAAAATTCCCAACAATGAGGTATAACTATGAGAATCATGTGTCCTAATAGTTGTAATATCTTGATATTTTGCATTTTTCAAAATTGTCCGGTGATGCTAAATATTTGCTTGAACACAAACATTTTCAATTTTTTTATTACAACATTTTCTATTTTTTGTAGCTATACCATTTGGATTTTTTAAATGAGATTCGGTAAAGTTATTTACCGTGTCAATTTACTTTTGCTGATGGAAACTTGTTCCAGGCTCTTATTGTCTCATGTTGTGGCTGCTTCAATGGTCGTACATTGGGTGTCATATCTATGAGTTGTGACAATGAAGCTACCCGTGGTTTTGGTCCTTTAATGCCAGGCCATCTTAAAGTTGATTTTGGTGATGCAGAAGCGCTCGAGAAAATTTTCAAAGGTTTTGAATTATTTCATACACTTTTTTTTGTTAACTATCAGTATATTTTGCTTAGCATGACATATATTTGATATATACTAATTGAATTTTCTCCCTGCTGAACTGCAGAAAAAGGAGACCGCATAGCTGCATTTATTTTGGAACCTATCCAAGGGGAAGCTGGGGTATGTTTTGTTAGAATACTTATTTGATTACACTTCCAAAAAAAAAAGAATACTTATTTGATTAGCCAATATGTTTCCTTTGTATGATGTACCGCATAGAACTCGTTGTCTAACATTTTTAAAACTTGTCACTTGTTTTATCTTAAATGGAAAACAGAAACAGAGAGATAGAGAGAGTGCAGACAACATTGAGAGAATAGAGAGAATGAAACTGTGATTCTTTTATTGTGAAATGATGGTAGTTACAACATATCTAAGATATTGCTTATAGAGGGCAATGCTGAGTTATCAAATAAGTTACAAGTCTTGTGACTTGTTTGGCTTACCCTAACTGATTCTATTTTCTATTCTTATGTATTTATTCTAGCATATCTCTAATATTCTCCCCCTGAAACCTAGCAGGTTTCTAGATTAGAGATAGAGATTGTGAGATAGAGTTACTTTTTTCCTGAGGAAAAAGATGTCTAGTTCCATATGATTTAGTCTTTGCAAGAAGGACTGGATTGTGAGATAGAGATACCGTGCTCATGTATCACAATAGAGAGAGTGCTGCAGAGCACATTGAGAGAATAGTGAGAGTTAAACTGTAATTCTGTTATTATGAAATGTTGGTAGTTACAACTGATCTCAGAAATTGCTTATATAGGGCAACGCTGAGTTATCAAGTTAGATACAAGTCTTGTGACTTTTTTGGCTAGCCTTTACCTATTCTATTTTCTATTCTTATGTACTTATTCCAGCATATCTCTTATATATCTGTATTCTTTGACCATGTGAAATGTACCGTTTTTGAATTTCGGTGTTACTTACATTGTATCTTTTGATCCATTTATGAAGTATAATAGTTTGCTTCCGAGAATGTAATATTATGTATGATACGATTCTTGATGATACACTGTGACAGTCCATCTTTGACCGGCTTTCGTTCATGATCTAATTTAACGATGATCTCTTAATTTATCCGTCAAACTGATTTTTTTATTGTTTTTTCAATATTAATGTTATGAAAAATGGGAATTCTGTTATGATCTCTTGCATATTTCATCCTGTAGAATAGCTCTCACATTATGCAGTCACTTTTTGTTAAGTTTTACTTTTCCAAACATATCATCTTTTCCACATTTTTTTATATGACGTTATATTTTTTTACAGGTGAAAATCCCCCCAGATGGTTATTTGAAAGCTGTTAGAGATCTTTGTTCCAAATATAACGTGTTGATGATTGCTGATGAAATACAAACTGGATTAGCAAGAACAGGAAAAATGCTGGCTTGTGAGTGGGAAGAAGTTCGTCCAGATGTAGTGGTTGGTGTTCACCTTTACCTCTTATATATTCTGTATCTCTTTATTCATCCCTTGTACTTCGCTATAAACATCATCCTGTCGTCACACGGTTAGTAAAATATGTTGCAACTCATTGCAATTTATTTTGCATCCTTTTAATAATTTAAGTTCAGAGGTGTTTTTCATTATATCAATAATCAGTTACATTCTTCAGCTTGAAACTGACACTACATGGCAAGAAATAGGCATGTGTTCGTAATTGATTCCAAAAGATACCTTACTTCCTTTAACCATATCATACGATTCTTCGCAATGCTTGTACTTTTGTGTTTTACTGGTAAAACAGAGAATATTATGGTTGGATTAGTTTCTCTGTAATTTTAACAATAGAAAGTTGCTTCATGACAGAAAAGCTTTAAGATACAGACTTTTAGCCATATTATATCTAGTTTTTCCTTCTATTCCTGTGAATATGCATCAGAAACTTGTCTGAGTCTTAGTCAATGGAATTTTTTTATATTGCCATTTGCAAGTATGCAGCTAGGTAGATGCATTTAACTAGGTACCACTGGATAGACCTGACCATCCAACTTATGTTTTTTTTTTCACAAAAAAGAGAAACTTATGGTCTTTGCTGCTATCTCCCTTTTTCTTTTTTATTCTGTAACCTTTTTCTGAGGTTTAGTTTCCTTTTTATACCACTAATTTCTTTAACTTTCTTTTGATTCAGATACTAGGGAAAGCTTTGGGTGGAGGAATTATTCCAGTTAGCGCAGTTCTTGCAGACAAAGAAGTGATGCTTTGTATAAAACCTGGACAGCATGGAAGGTTTAATTTCTTATTATTTTTTTAAATACTCCATTCGTTTATTGTTTTCTTGTCAATAGTTGTCAAACATAGAAGGTTTTGCTGAGCATCTGTTTCCGCCCTTAAACCCCTTGATTGGTCTTATGGTGTGAGTGAAGAAACAAAACTCCACCTTCTGTTGGAATCAGAAGTCTTACAATATGTAGTTTGTTTTGATTTGATTAAGTTGAAAGGTTTCAAAAAGGTGTGCTCATTATGAAATAGATTTGTGAATCCTTGTGTCCATGGCCGTTTGCATGTCTTGATTTAACCTTGTAATGGTTATTTATTTTTTTAAAAAAATCCATCCTATGGGAACTAGTGAAATTGCACTCCTCACTTTTGCATTGATTTCTTTTTATGTAACTAGCCGATAATTTCATTCATTAAAATGAAATTAATTGTTTATTAAAGAAGGAAGTGAATACTTGTAATGCTAAACCTTTTTTTTTCTGTTACTTTTCACAGTACTTTTGGTGGAAATCCATTGGCCAGTGCAGTTGCCATTGCCTCACTTGAAGTGATCAAAGAAGAGAGACTTGCTGAGAGGTATTAAATGCATTACAAAGTCTTATAATGTCAACAATATACTTTTGAATAAATTTATTTCATTAGGCACATCTGCATGTGAAATAAAAGCTTTATTACTCTGCAGTACTAAGTTAGTCTTATATATTGATCTGGTTCATTTATTCTCTCTACTTTGTACCACTCTCTTTGAGATATCGATGCGTAAAGTATGCAACTGATGTCTTAGTATTGGACAGATCTACCCAAATGGGAGGTGAGCTTCTCGGTCTGCTGCAGAAGATTCAGAAACAATACCCGGACCATGTGAAGGAGGTGCGGGGAAGAGGACTGTTCATTGGAGTCGAGCTTAACAGCGAAAGTTTGTCCCCTGTATCAGGCTTTGAATTAAGTGAAAAATTGAAGGATAGAGGAGTTCTTGCCAAGTCAACACATGACACAATTATTCGCTTCACTCCCCCACTGTGCATAAGGTAAGAAAGTGATGAAAACCATTTAAGCAATGTCTTAAGTTGAGTTCACATGCACATTAAGGATATTGCCTATTTGTAACTTTCACCATTGCCTCATTTATATTTATTCATCATTATAGCTAGTTGAGTACTTCAGGTTATGCGTCTTGGAAAACCTTGTTTTCATTTTTCACTATATGCATAATTATTGAAATTGAAAGCTAGGTTTTGTTTACAGCCTAATCTAGTTATGCTTATGAAGAGTAATTTATCATATTCAAATTTTAGAACAATGATTTGATTACTGTGAATGGTAGGTAGAATCCTAGATAAAAGAAATAATGCTTCTGGCAATTTTGTGTCATCCTTTTTGTCCTCTCAAAGGATTAGGTTACTTGTGTATTGTAAATGTCCCTAATATTTTGGTCTAGGATTTGACATAAAAGTAATCCTTGCAGTGCGGATGAGATCCAACAAGGTTCTAAGGCCCTCGCTGATGTGCTGGAAATTGATCTACCAATGTTGAAAAAGATGAAGCCAAAAGATGCTGCTCCTCCAGCTGGCCCTAGTGCATGTGATCGTTGTGGTCGAGTCGTGTATGGTTAA
Protein sequence

>MS.gene023325.t1

MASTRQVQCLMRRFYRGTRTFGVATQPNASSSSQTIIDKEFQHSAHNYHPLPIVFAHAKGSAVWDPEGNKYIDFLSGYSAVNQGHCHPKILKALKDQADRLTVSSRAFYNDRFPVFAEYLTALFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPNNEALIVSCCGCFNGRTLGVISMSCDNEATRGFGPLMPGHLKVDFGDAEALEKIFKEKGDRIAAFILEPIQGEAGVKIPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACEWEEVRPDVVILGKALGGGIIPVSAVLADKEVMLCIKPGQHGSTFGGNPLASAVAIASLEVIKEERLAERSTQMGGELLGLLQKIQKQYPDHVKEVRGRGLFIGVELNSESLSPVSGFELSEKLKDRGVLAKSTHDTIIRFTPPLCISADEIQQGSKALADVLEIDLPMLKKMKPKDAAPPAGPSACDRCGRVVYG