Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70340.t1 | XP_003630095.1 | 97.9 | 483 | 7 | 2 | 1 | 482 | 1 | 481 | 3.50E-273 | 950.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70340.t1 | Q940M2 | 82.2 | 482 | 80 | 2 | 1 | 482 | 1 | 476 | 3.6e-234 | 812.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70340.t1 | B7FLF5 | 97.9 | 483 | 7 | 2 | 1 | 482 | 1 | 481 | 2.5e-273 | 950.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene70340 | -0.810908 | 9.12E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene70340 | -0.812384 | 4.36E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene70340 | -0.822886 | 1.86E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene70340 | -0.811043 | 8.53E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene70340 | -0.806229 | 9.10E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene70340 | 0.820025 | 8.53E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene70340 | -0.840602 | 7.88E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene70340 | -0.823466 | 1.36E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene70340 | -0.831028 | 2.10E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene70340 | -0.865308 | 6.49E-65 | -1.69E-46 |
| MS.gene050338 | MS.gene70340 | 0.815789 | 7.72E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene70340 | 0.802567 | 5.28E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene70340 | -0.808215 | 3.46E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene70340 | -0.856071 | 4.12E-62 | -1.69E-46 |
| MS.gene050504 | MS.gene70340 | -0.828921 | 6.87E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene70340 | -0.838682 | 2.49E-57 | -1.69E-46 |
| MS.gene050662 | MS.gene70340 | -0.81898 | 1.48E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene70340 | -0.819144 | 1.35E-52 | -1.69E-46 |
| MS.gene050809 | MS.gene70340 | 0.811755 | 5.97E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene70340 | -0.825223 | 5.27E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene70340 | -0.874576 | 6.06E-68 | -1.69E-46 |
| MS.gene050871 | MS.gene70340 | -0.875095 | 4.04E-68 | -1.69E-46 |
| MS.gene05104 | MS.gene70340 | 0.852867 | 3.48E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene70340 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene70340 | -0.812049 | 5.15E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene70340 | 0.80727 | 5.49E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene70340 | -0.805607 | 1.23E-49 | -1.69E-46 |
| MS.gene051863 | MS.gene70340 | 0.815183 | 1.05E-51 | -1.69E-46 |
| MS.gene051874 | MS.gene70340 | -0.803248 | 3.82E-49 | -1.69E-46 |
| MS.gene052129 | MS.gene70340 | 0.811067 | 8.43E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene70340 | -0.814649 | 1.38E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene70340 | -0.828513 | 8.62E-55 | -1.69E-46 |
| MS.gene052822 | MS.gene70340 | -0.828058 | 1.11E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene70340 | -0.804222 | 2.40E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene70340 | -0.801098 | 1.06E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene70340 | -0.841805 | 3.80E-58 | -1.69E-46 |
| MS.gene053479 | MS.gene70340 | -0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene053633 | MS.gene70340 | -0.82773 | 1.33E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene70340 | -0.809626 | 1.72E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene70340 | -0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene70340 | -0.816419 | 5.58E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene70340 | -0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene70340 | -0.814196 | 1.74E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene70340 | 0.828452 | 8.92E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene70340 | -0.833511 | 5.12E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene70340 | -0.829 | 6.57E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene70340 | -0.837229 | 5.88E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene70340 | -0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene70340 | -0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene70340 | -0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene70340 | -0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene70340 | -0.827266 | 1.72E-54 | -1.69E-46 |
| MS.gene055942 | MS.gene70340 | 0.832588 | 8.68E-56 | -1.69E-46 |
| MS.gene056046 | MS.gene70340 | -0.828015 | 1.14E-54 | -1.69E-46 |
| MS.gene056387 | MS.gene70340 | -0.834983 | 2.19E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene70340 | -0.846787 | 1.74E-59 | -1.69E-46 |
| MS.gene056510 | MS.gene70340 | -0.854225 | 1.42E-61 | -1.69E-46 |
| MS.gene056657 | MS.gene70340 | -0.819275 | 1.27E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene70340 | 0.832635 | 8.45E-56 | -1.69E-46 |
| MS.gene056857 | MS.gene70340 | 0.815444 | 9.22E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene70340 | 0.80464 | 1.96E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene70340 | -0.818034 | 2.42E-52 | -1.69E-46 |
| MS.gene057857 | MS.gene70340 | -0.812361 | 4.41E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene70340 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene70340 | 0.830356 | 3.08E-55 | -1.69E-46 |
| MS.gene058157 | MS.gene70340 | -0.831737 | 1.41E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene70340 | 0.816898 | 4.36E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene70340 | 0.809659 | 1.70E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene70340 | 0.821713 | 3.49E-53 | -1.69E-46 |
| MS.gene058334 | MS.gene70340 | 0.83959 | 1.45E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene70340 | -0.801274 | 9.73E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene70340 | 0.837876 | 4.01E-57 | -1.69E-46 |
| MS.gene058416 | MS.gene70340 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene70340 | -0.808246 | 3.40E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene70340 | -0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene70340 | 0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene70340 | 0.817629 | 2.99E-52 | -1.69E-46 |
| MS.gene059367 | MS.gene70340 | -0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene059699 | MS.gene70340 | 0.989761 | 1.58E-179 | -1.69E-46 |
| MS.gene059701 | MS.gene70340 | 0.951279 | 2.85E-109 | -1.69E-46 |
| MS.gene059703 | MS.gene70340 | 0.997565 | 7.37E-245 | -1.69E-46 |
| MS.gene059718 | MS.gene70340 | -0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene70340 | -0.858026 | 1.09E-62 | -1.69E-46 |
| MS.gene06000 | MS.gene70340 | -0.815271 | 1.01E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene70340 | -0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene060526 | MS.gene70340 | -0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene060561 | MS.gene70340 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene70340 | -0.822844 | 1.91E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene70340 | -0.816368 | 5.73E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene70340 | -0.850345 | 1.80E-60 | -1.69E-46 |
| MS.gene061044 | MS.gene70340 | 0.803495 | 3.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70340 | MS.gene28928 | PPI |
| MS.gene031835 | MS.gene70340 | PPI |
| MS.gene023325 | MS.gene70340 | PPI |
| MS.gene050272 | MS.gene70340 | PPI |
| MS.gene052375 | MS.gene70340 | PPI |
| MS.gene87756 | MS.gene70340 | PPI |
| MS.gene043742 | MS.gene70340 | PPI |
| MS.gene87050 | MS.gene70340 | PPI |
| MS.gene26019 | MS.gene70340 | PPI |
| MS.gene34910 | MS.gene70340 | PPI |
| MS.gene08300 | MS.gene70340 | PPI |
| MS.gene70340 | MS.gene003378 | PPI |
| MS.gene42086 | MS.gene70340 | PPI |
| MS.gene010912 | MS.gene70340 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70340.t1 | MTR_8g091660 | 97.930 | 483 | 7 | 2 | 1 | 482 | 1 | 481 | 0.0 | 972 |
| MS.gene70340.t1 | MTR_7g072420 | 61.795 | 479 | 180 | 1 | 4 | 482 | 6 | 481 | 0.0 | 639 |
| MS.gene70340.t1 | MTR_3g465800 | 60.087 | 461 | 184 | 0 | 22 | 482 | 13 | 473 | 0.0 | 604 |
| MS.gene70340.t1 | MTR_3g465800 | 64.824 | 398 | 140 | 0 | 85 | 482 | 5 | 402 | 0.0 | 561 |
| MS.gene70340.t1 | MTR_7g451450 | 29.095 | 409 | 253 | 8 | 80 | 479 | 83 | 463 | 2.57e-45 | 165 |
| MS.gene70340.t1 | MTR_4g076100 | 28.095 | 420 | 262 | 15 | 84 | 472 | 81 | 491 | 5.74e-35 | 137 |
| MS.gene70340.t1 | MTR_4g076100 | 28.190 | 337 | 205 | 13 | 164 | 472 | 20 | 347 | 2.08e-28 | 116 |
| MS.gene70340.t1 | MTR_3g465840 | 61.972 | 71 | 27 | 0 | 97 | 167 | 76 | 146 | 2.62e-26 | 104 |
| MS.gene70340.t1 | MTR_7g031840 | 36.019 | 211 | 88 | 6 | 285 | 479 | 35 | 214 | 8.29e-25 | 102 |
| MS.gene70340.t1 | MTR_3g089960 | 32.900 | 231 | 70 | 7 | 292 | 482 | 20 | 205 | 1.07e-22 | 97.4 |
| MS.gene70340.t1 | MTR_3g118070 | 26.347 | 334 | 217 | 10 | 83 | 404 | 18 | 334 | 1.15e-18 | 88.2 |
| MS.gene70340.t1 | MTR_3g118070 | 26.347 | 334 | 217 | 10 | 83 | 404 | 75 | 391 | 1.44e-18 | 88.6 |
| MS.gene70340.t1 | MTR_4g045917 | 44.444 | 117 | 32 | 4 | 328 | 444 | 8 | 91 | 1.28e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70340.t1 | AT4G39660 | 82.158 | 482 | 80 | 2 | 1 | 482 | 1 | 476 | 0.0 | 829 |
| MS.gene70340.t1 | AT4G39660 | 87.437 | 398 | 50 | 0 | 85 | 482 | 4 | 401 | 0.0 | 740 |
| MS.gene70340.t1 | AT3G08860 | 60.537 | 484 | 183 | 2 | 1 | 482 | 4 | 481 | 0.0 | 635 |
| MS.gene70340.t1 | AT2G38400 | 60.543 | 479 | 187 | 2 | 4 | 482 | 1 | 477 | 0.0 | 620 |
| MS.gene70340.t1 | AT3G08860 | 60.638 | 470 | 177 | 2 | 1 | 468 | 4 | 467 | 0.0 | 614 |
| MS.gene70340.t1 | AT2G38400 | 59.454 | 476 | 191 | 2 | 4 | 479 | 1 | 474 | 0.0 | 602 |
| MS.gene70340.t1 | AT1G80600 | 30.097 | 412 | 251 | 9 | 80 | 482 | 73 | 456 | 2.57e-51 | 181 |
| MS.gene70340.t1 | AT5G46180 | 28.066 | 424 | 264 | 13 | 76 | 482 | 51 | 450 | 1.24e-38 | 147 |
| MS.gene70340.t1 | AT3G22200 | 27.098 | 417 | 271 | 12 | 84 | 472 | 70 | 481 | 2.12e-37 | 144 |
| MS.gene70340.t1 | AT3G22200 | 27.098 | 417 | 271 | 12 | 84 | 472 | 79 | 490 | 2.23e-37 | 144 |
| MS.gene70340.t1 | AT3G48730 | 26.645 | 304 | 194 | 10 | 83 | 375 | 79 | 364 | 2.87e-17 | 84.7 |
| MS.gene70340.t1 | AT5G63570 | 26.821 | 302 | 192 | 11 | 83 | 373 | 18 | 301 | 8.09e-16 | 79.7 |
| MS.gene70340.t1 | AT5G63570 | 26.821 | 302 | 192 | 11 | 83 | 373 | 81 | 364 | 8.14e-16 | 80.1 |
Find 137 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCACACTTGCAATTTC+TGG | 0.096360 | 4.1:-9682649 | None:intergenic |
| ATGTATTGAATTGAATCTTC+TGG | 0.253389 | 4.1:-9682672 | None:intergenic |
| AAGATGGCATTCAAAATATC+AGG | 0.254872 | 4.1:-9681024 | None:intergenic |
| GCCGCACAGGAAGCCATTAT+TGG | 0.257614 | 4.1:+9682233 | MS.gene70340:CDS |
| TTTGCCATTGTAACTATATC+AGG | 0.279616 | 4.1:-9682280 | None:intergenic |
| ACTTGCAGTGCTCAAGGTTC+TGG | 0.300527 | 4.1:+9682726 | MS.gene70340:CDS |
| GGCGGTGGCGGTGGCGGAGG+AGG | 0.321506 | 4.1:-9680660 | None:intergenic |
| GGTTTGAGGGGCGGTGGCGG+TGG | 0.324212 | 4.1:-9680669 | None:intergenic |
| TGCTGATTTCGCCGAGGCTT+TGG | 0.324826 | 4.1:+9681101 | MS.gene70340:CDS |
| ATTGGCAATGGTTTGCCATT+AGG | 0.331757 | 4.1:+9682610 | MS.gene70340:CDS |
| TTGAGGGGCGGTGGCGGTGG+CGG | 0.338460 | 4.1:-9680666 | None:intergenic |
| GTCCAAGACCATATTGACTA+TGG | 0.338821 | 4.1:+9681960 | MS.gene70340:CDS |
| TGACTCACTTTAAGATTTCC+AGG | 0.342658 | 4.1:-9681135 | None:intergenic |
| AAGATTCAATTCAATACATT+TGG | 0.343865 | 4.1:+9682676 | MS.gene70340:CDS |
| CCGCACAGGAAGCCATTATT+GGG | 0.343964 | 4.1:+9682234 | MS.gene70340:CDS |
| CACCAGCCTCATCCGTATAA+TGG | 0.348055 | 4.1:+9680725 | MS.gene70340:CDS |
| CATATTGACTATGGGACTTC+AGG | 0.361967 | 4.1:+9681969 | MS.gene70340:CDS |
| AGGGGCGGTGGCGGTGGCGG+AGG | 0.363259 | 4.1:-9680663 | None:intergenic |
| GACCCATACCGTGGAGTCTT+TGG | 0.367976 | 4.1:+9681909 | MS.gene70340:CDS |
| GGGAACCCCGTATGTTCTGC+CGG | 0.378650 | 4.1:+9682700 | MS.gene70340:CDS |
| GACATCTTTAGCATAGCTAT+TGG | 0.380021 | 4.1:-9681940 | None:intergenic |
| GATGAAGTGCAAACTGGATT+TGG | 0.382596 | 4.1:+9682211 | MS.gene70340:CDS |
| GGGACTTCAGGAAAAGTTGC+TGG | 0.384171 | 4.1:+9681981 | MS.gene70340:CDS |
| TCGGCGGATGGTCCATTATA+CGG | 0.389198 | 4.1:-9680737 | None:intergenic |
| TGTATTGAATTGAATCTTCT+GGG | 0.397988 | 4.1:-9682671 | None:intergenic |
| CAGGCTCATTGCGCTGATGT+TGG | 0.409243 | 4.1:+9682763 | MS.gene70340:CDS |
| GCTTTGGCCGCCAAGATGCC+TGG | 0.409635 | 4.1:+9681117 | MS.gene70340:CDS |
| GTGTCTCGAATCCCCAATAA+TGG | 0.409809 | 4.1:-9682246 | None:intergenic |
| CTGAAGTCCCATAGTCAATA+TGG | 0.412467 | 4.1:-9681968 | None:intergenic |
| GTTGTTCTGTAATAGGGTAT+TGG | 0.414384 | 4.1:+9682592 | MS.gene70340:intron |
| GTAGAACTTGGCATTCTAGC+TGG | 0.420173 | 4.1:+9683289 | MS.gene70340:intron |
| AGAAATCATACCAAGATTAC+CGG | 0.422579 | 4.1:-9681347 | None:intergenic |
| GGGATTGTTACTGTTTCTGC+TGG | 0.423180 | 4.1:+9680991 | MS.gene70340:CDS |
| AAGAAACAAACCTCAGGAAG+TGG | 0.423458 | 4.1:-9681439 | None:intergenic |
| TGGTTCTGAAGCAAATGAAT+TGG | 0.427678 | 4.1:+9681300 | MS.gene70340:CDS |
| ACAGCAGTTTCAGCCTTTGC+AGG | 0.430454 | 4.1:-9683153 | None:intergenic |
| TTTAAGATTTCCAGGCATCT+TGG | 0.432518 | 4.1:-9681127 | None:intergenic |
| GCGGAGTAGTGATGGTTTGA+GGG | 0.446544 | 4.1:-9680682 | None:intergenic |
| TAAATCGGAACGGTTAGGTT+TGG | 0.452559 | 4.1:-9680606 | None:intergenic |
| ATTGGTGATGTGAGGGGAAG+AGG | 0.455086 | 4.1:+9683084 | MS.gene70340:CDS |
| GATGGTTTGAGGGGCGGTGG+CGG | 0.456915 | 4.1:-9680672 | None:intergenic |
| GGCGGAGTAGTGATGGTTTG+AGG | 0.457617 | 4.1:-9680683 | None:intergenic |
| TCCCATAGTCAATATGGTCT+TGG | 0.460865 | 4.1:-9681962 | None:intergenic |
| AAGACTCCACGGTATGGGTC+TGG | 0.464064 | 4.1:-9681906 | None:intergenic |
| ATTCAATTCAATACATTTGG+TGG | 0.466618 | 4.1:+9682679 | MS.gene70340:CDS |
| GCAAGTAAATCGGAACGGTT+AGG | 0.469454 | 4.1:-9680611 | None:intergenic |
| ATCTTGGTATGATTTCTTTG+AGG | 0.472887 | 4.1:+9681353 | MS.gene70340:CDS |
| AGGTCTGCATGCAAGTAAAT+CGG | 0.473835 | 4.1:-9680621 | None:intergenic |
| GGAGGAAGTTCTAGTACAAT+GGG | 0.479315 | 4.1:+9681388 | MS.gene70340:CDS |
| TGGCGGTGGCGGAGGAGGAT+CGG | 0.482129 | 4.1:-9680655 | None:intergenic |
| GGAACCCCGTATGTTCTGCC+GGG | 0.483488 | 4.1:+9682701 | MS.gene70340:CDS |
| TGGAGGAAGTTCTAGTACAA+TGG | 0.484867 | 4.1:+9681387 | MS.gene70340:CDS |
| CATCTTGGCGGCCAAAGCCT+CGG | 0.487359 | 4.1:-9681112 | None:intergenic |
| AGATTGTATACCGGTAATCT+TGG | 0.491103 | 4.1:+9681337 | MS.gene70340:CDS |
| CTGTAATAGGGTATTGGCAA+TGG | 0.494645 | 4.1:+9682598 | MS.gene70340:intron |
| GCACCAAAGACTCCACGGTA+TGG | 0.496972 | 4.1:-9681912 | None:intergenic |
| TCTTTGAGGAATGCATATCA+TGG | 0.501479 | 4.1:+9681367 | MS.gene70340:CDS |
| TTCAATTCAATACATTTGGT+GGG | 0.503313 | 4.1:+9682680 | MS.gene70340:CDS |
| AGTGATGGTTTGAGGGGCGG+TGG | 0.504104 | 4.1:-9680675 | None:intergenic |
| CTCAGTCATTGGTGATGTGA+GGG | 0.509676 | 4.1:+9683077 | MS.gene70340:intron |
| TAGAACTTGGCATTCTAGCT+GGG | 0.511798 | 4.1:+9683290 | MS.gene70340:intron |
| ACCGAGGAACTGTTTACGCT+TGG | 0.513420 | 4.1:-9680771 | None:intergenic |
| GTTTGTGTAGTTGAATATTG+TGG | 0.514435 | 4.1:+9680909 | MS.gene70340:intron |
| CAAACTGGATTTGGCCGCAC+AGG | 0.519629 | 4.1:+9682220 | MS.gene70340:CDS |
| ATTGCAGATGAAGTGCAAAC+TGG | 0.520939 | 4.1:+9682205 | MS.gene70340:CDS |
| AAGTTTACTCTGCTCAAAGA+TGG | 0.529014 | 4.1:-9681040 | None:intergenic |
| AGCATGGTGTAGATAAATAG+TGG | 0.534502 | 4.1:-9681076 | None:intergenic |
| GTCCATTATACGGATGAGGC+TGG | 0.536767 | 4.1:-9680727 | None:intergenic |
| CTTGAGCACTGCAAGTCCCC+CGG | 0.539059 | 4.1:-9682719 | None:intergenic |
| GAGGGGAAGAGGACTAATGC+TGG | 0.543953 | 4.1:+9683095 | MS.gene70340:CDS |
| TGATAGAAATGGAACAAGGA+AGG | 0.544076 | 4.1:-9680794 | None:intergenic |
| CAATATCTGTATGATGAAGC+TGG | 0.544301 | 4.1:+9680943 | MS.gene70340:CDS |
| AAGATTTCCAGGCATCTTGG+CGG | 0.548588 | 4.1:-9681124 | None:intergenic |
| ACGCTTGGCGAATACTTCAT+CGG | 0.548870 | 4.1:-9680756 | None:intergenic |
| GTTGTAACTACAGCTCCTAA+TGG | 0.549950 | 4.1:-9682625 | None:intergenic |
| GTGATCTCAAACGCTCAAGC+AGG | 0.554165 | 4.1:-9682792 | None:intergenic |
| GCTGGGAAAGGAGGACTGCA+TGG | 0.556047 | 4.1:+9683307 | MS.gene70340:CDS |
| TCTGGATAACGAGAAGCGGC+AGG | 0.556953 | 4.1:+9682744 | MS.gene70340:CDS |
| AGGGGAAGAGGACTAATGCT+GGG | 0.557249 | 4.1:+9683096 | MS.gene70340:CDS |
| TCTTTACTGAAACACATTGG+TGG | 0.561144 | 4.1:-9683349 | None:intergenic |
| TATGACATTGTACACGAGGC+TGG | 0.561488 | 4.1:+9682172 | MS.gene70340:CDS |
| GTGTAGTTGAATATTGTGGA+GGG | 0.563413 | 4.1:+9680913 | MS.gene70340:intron |
| AGTAGTGATGGTTTGAGGGG+CGG | 0.564148 | 4.1:-9680678 | None:intergenic |
| CAATCCCAGCAAAAGCATCA+AGG | 0.564493 | 4.1:-9680975 | None:intergenic |
| GGAGCAGTTGAACTCGTACC+TGG | 0.565302 | 4.1:+9682133 | MS.gene70340:CDS |
| CACCAAAGACTCCACGGTAT+GGG | 0.569702 | 4.1:-9681911 | None:intergenic |
| GGCATTCTAGCTGGGAAAGG+AGG | 0.570151 | 4.1:+9683298 | MS.gene70340:CDS |
| TCCAGAAATTGCAAGTGTGA+TGG | 0.570685 | 4.1:+9682648 | MS.gene70340:CDS |
| GATGGTCCATTATACGGATG+AGG | 0.572300 | 4.1:-9680731 | None:intergenic |
| GAACCCCGTATGTTCTGCCG+GGG | 0.574287 | 4.1:+9682702 | MS.gene70340:CDS |
| TCCAAGACCATATTGACTAT+GGG | 0.574460 | 4.1:+9681961 | MS.gene70340:CDS |
| TGATCGAACGGCGGAATCTG+CGG | 0.579441 | 4.1:-9680704 | None:intergenic |
| AATCTGCGGCGGAGTAGTGA+TGG | 0.579469 | 4.1:-9680690 | None:intergenic |
| GGGTAGAGCTTGTTACCGAC+CGG | 0.584382 | 4.1:+9683118 | MS.gene70340:CDS |
| GAGGATCGGAGAGAAGAGAA+AGG | 0.584582 | 4.1:-9680641 | None:intergenic |
| TATTCCTGATATAGTTACAA+TGG | 0.585000 | 4.1:+9682276 | MS.gene70340:CDS |
| GCGAATACTTCATCGGCGGA+TGG | 0.586284 | 4.1:-9680749 | None:intergenic |
| GTCTCACCGCTCTTAACACA+TGG | 0.586462 | 4.1:+9681410 | MS.gene70340:CDS |
| ATTCATAGCTGAAACAATCC+AGG | 0.588039 | 4.1:+9682004 | MS.gene70340:CDS |
| CCCAATAATGGCTTCCTGTG+CGG | 0.588913 | 4.1:-9682234 | None:intergenic |
| TCTCAGTCATTGGTGATGTG+AGG | 0.591066 | 4.1:+9683076 | MS.gene70340:intron |
| CTTGGCATTCTAGCTGGGAA+AGG | 0.591195 | 4.1:+9683295 | MS.gene70340:CDS |
| TGTGTAGTTGAATATTGTGG+AGG | 0.595941 | 4.1:+9680912 | MS.gene70340:intron |
| AAATGAATTGGCAATGCTGA+TGG | 0.597471 | 4.1:+9681312 | MS.gene70340:CDS |
| GCCAAGCGTAAACAGTTCCT+CGG | 0.600798 | 4.1:+9680770 | MS.gene70340:CDS |
| TGATATAGTTACAATGGCAA+AGG | 0.606729 | 4.1:+9682282 | MS.gene70340:CDS |
| TGTAGTTGAATATTGTGGAG+GGG | 0.612466 | 4.1:+9680914 | MS.gene70340:intron |
| TCAGTCATTGGTGATGTGAG+GGG | 0.613915 | 4.1:+9683078 | MS.gene70340:intron |
| CTGATGGCAAGATTGTATAC+CGG | 0.616966 | 4.1:+9681328 | MS.gene70340:CDS |
| CGGCGAAATCAGCAATAGCA+TGG | 0.617141 | 4.1:-9681092 | None:intergenic |
| CGGAGTAGTGATGGTTTGAG+GGG | 0.623652 | 4.1:-9680681 | None:intergenic |
| GGATGAGGCTGGTGATCGAA+CGG | 0.624953 | 4.1:-9680716 | None:intergenic |
| TTATTGGGGATTCGAGACAC+AGG | 0.628247 | 4.1:+9682249 | MS.gene70340:CDS |
| CGCACAGGAAGCCATTATTG+GGG | 0.631540 | 4.1:+9682235 | MS.gene70340:CDS |
| AGATGGCATTCAAAATATCA+GGG | 0.633200 | 4.1:-9681023 | None:intergenic |
| TGCTATTGCTGATTTCGCCG+AGG | 0.635228 | 4.1:+9681095 | MS.gene70340:CDS |
| TCATCTTTACTGAAACACAT+TGG | 0.635753 | 4.1:-9683352 | None:intergenic |
| ATGGAAATACCCACTTCCTG+AGG | 0.639038 | 4.1:+9681429 | MS.gene70340:CDS |
| AGAAACAAACCTCAGGAAGT+GGG | 0.641740 | 4.1:-9681438 | None:intergenic |
| AGGTTCTGGATAACGAGAAG+CGG | 0.647863 | 4.1:+9682740 | MS.gene70340:CDS |
| AACCCCGTATGTTCTGCCGG+GGG | 0.654362 | 4.1:+9682703 | MS.gene70340:CDS |
| GGGGAAGAGGACTAATGCTG+GGG | 0.657842 | 4.1:+9683097 | MS.gene70340:CDS |
| CTTTGTCATAGAATAGTCCA+AGG | 0.661429 | 4.1:-9683502 | None:intergenic |
| CATCTGCACCAAAGACTCCA+CGG | 0.662027 | 4.1:-9681917 | None:intergenic |
| TGCATGCAAGTAAATCGGAA+CGG | 0.667279 | 4.1:-9680616 | None:intergenic |
| TCGAACGGCGGAATCTGCGG+CGG | 0.669945 | 4.1:-9680701 | None:intergenic |
| TGTTTCAGTAAAGATGACGC+AGG | 0.689295 | 4.1:+9683358 | MS.gene70340:CDS |
| TTGAGGAATGCATATCATGG+AGG | 0.692717 | 4.1:+9681370 | MS.gene70340:CDS |
| GTATTTCCATGTGTTAAGAG+CGG | 0.693451 | 4.1:-9681416 | None:intergenic |
| TATTGGGGATTCGAGACACA+GGG | 0.695331 | 4.1:+9682250 | MS.gene70340:CDS |
| AGTATATGACATTGTACACG+AGG | 0.703868 | 4.1:+9682168 | MS.gene70340:CDS |
| TGAGGCTGGTGATCGAACGG+CGG | 0.706578 | 4.1:-9680713 | None:intergenic |
| AATGGAACAAGGAAGGACCG+AGG | 0.715204 | 4.1:-9680787 | None:intergenic |
| CTTGGCGAATACTTCATCGG+CGG | 0.715870 | 4.1:-9680753 | None:intergenic |
| ATGAATCCAGACCCATACCG+TGG | 0.720666 | 4.1:+9681900 | MS.gene70340:CDS |
| GGGAAGAGGACTAATGCTGG+GGG | 0.726558 | 4.1:+9683098 | MS.gene70340:CDS |
| GACATTGTACACGAGGCTGG+TGG | 0.771585 | 4.1:+9682175 | MS.gene70340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTTATACTTCTTATT+TGG | - | chr4.1:9683254-9683273 | None:intergenic | 15.0% |
| !! | GAAAAAGTAAATAAAAAAGT+AGG | - | chr4.1:9682087-9682106 | None:intergenic | 15.0% |
| !! | GAGAATAATAATAAAAATTG+CGG | - | chr4.1:9683039-9683058 | None:intergenic | 15.0% |
| !! | AACATTAATATGAGATACAA+TGG | - | chr4.1:9682575-9682594 | None:intergenic | 20.0% |
| !! | AAGATTCAATTCAATACATT+TGG | + | chr4.1:9682676-9682695 | MS.gene70340:CDS | 20.0% |
| !! | ATTAATGTTGTTCTGTAATA+GGG | + | chr4.1:9682586-9682605 | MS.gene70340:intron | 20.0% |
| !! | TATAACTATTTACCTTCATA+TGG | + | chr4.1:9683263-9683282 | MS.gene70340:intron | 20.0% |
| !! | TATTAATGTTGTTCTGTAAT+AGG | + | chr4.1:9682585-9682604 | MS.gene70340:intron | 20.0% |
| !! | TTATATAATTTCTCAGTCAT+TGG | + | chr4.1:9683066-9683085 | MS.gene70340:intron | 20.0% |
| !!! | AATTTATGGTTTGTTAGTTT+CGG | - | chr4.1:9681834-9681853 | None:intergenic | 20.0% |
| !!! | TATACTTGTTTTAAATAACC+AGG | - | chr4.1:9682154-9682173 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTTTTCACCA+TGG | + | chr4.1:9682091-9682110 | MS.gene70340:intron | 20.0% |
| !!! | TTTTGTAATACAGTTCTTTA+TGG | + | chr4.1:9682872-9682891 | MS.gene70340:intron | 20.0% |
| ! | AAAGGCTTCAATATAAAATC+TGG | - | chr4.1:9683421-9683440 | None:intergenic | 25.0% |
| ! | ATGTATTGAATTGAATCTTC+TGG | - | chr4.1:9682675-9682694 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATACATTTGG+TGG | + | chr4.1:9682679-9682698 | MS.gene70340:CDS | 25.0% |
| ! | CACATTTAGGAAAAATAACA+TGG | - | chr4.1:9681564-9681583 | None:intergenic | 25.0% |
| ! | GTATACTGTACAAATGTATT+CGG | + | chr4.1:9681534-9681553 | MS.gene70340:intron | 25.0% |
| ! | TATTCCTGATATAGTTACAA+TGG | + | chr4.1:9682276-9682295 | MS.gene70340:CDS | 25.0% |
| ! | TCTATCCTGTTCAATATTTA+AGG | + | chr4.1:9682046-9682065 | MS.gene70340:intron | 25.0% |
| ! | TGTATTGAATTGAATCTTCT+GGG | - | chr4.1:9682674-9682693 | None:intergenic | 25.0% |
| ! | TTAATCTAGCATCTTAGAAA+TGG | + | chr4.1:9682845-9682864 | MS.gene70340:intron | 25.0% |
| ! | TTCAATTCAATACATTTGGT+GGG | + | chr4.1:9682680-9682699 | MS.gene70340:CDS | 25.0% |
| ! | TTTAGGAAAAATAACATGGT+TGG | - | chr4.1:9681560-9681579 | None:intergenic | 25.0% |
| !! | AGATAAATGAGTTTGATGAT+AGG | - | chr4.1:9680834-9680853 | None:intergenic | 25.0% |
| !! | ATTTAAGGTGGTAATTAGAT+TGG | + | chr4.1:9682061-9682080 | MS.gene70340:intron | 25.0% |
| !! | GTTGTGTATTTTGTAAATTC+TGG | + | chr4.1:9681280-9681299 | MS.gene70340:CDS | 25.0% |
| !! | TAAAACTTTTGCTGGATTAA+AGG | - | chr4.1:9683439-9683458 | None:intergenic | 25.0% |
| !! | TTAAAAGCACACTTTACATT+TGG | - | chr4.1:9681672-9681691 | None:intergenic | 25.0% |
| !! | TTTTTGATAGAAATGGAACA+AGG | - | chr4.1:9680801-9680820 | None:intergenic | 25.0% |
| !!! | AACAATTTTTGTTATGATGC+AGG | - | chr4.1:9683006-9683025 | None:intergenic | 25.0% |
| !!! | CATGTTATTTTTCCTAAATG+TGG | + | chr4.1:9681562-9681581 | MS.gene70340:intron | 25.0% |
| AAGATGGCATTCAAAATATC+AGG | - | chr4.1:9681027-9681046 | None:intergenic | 30.0% | |
| AAGTTCTACAATCCATATGA+AGG | - | chr4.1:9683278-9683297 | None:intergenic | 30.0% | |
| ACACATCGAGCTAAAATTTA+AGG | - | chr4.1:9682446-9682465 | None:intergenic | 30.0% | |
| AGAAATCATACCAAGATTAC+CGG | - | chr4.1:9681350-9681369 | None:intergenic | 30.0% | |
| AGATGGCATTCAAAATATCA+GGG | - | chr4.1:9681026-9681045 | None:intergenic | 30.0% | |
| ATCCTGTTCAATATTTAAGG+TGG | + | chr4.1:9682049-9682068 | MS.gene70340:intron | 30.0% | |
| ATCTATGTACATGGATTCTT+AGG | + | chr4.1:9682915-9682934 | MS.gene70340:intron | 30.0% | |
| ATCTTGGTATGATTTCTTTG+AGG | + | chr4.1:9681353-9681372 | MS.gene70340:CDS | 30.0% | |
| CTGTAATTTATAACGCCTAT+TGG | - | chr4.1:9681515-9681534 | None:intergenic | 30.0% | |
| GATCATGATATGTTATAGTC+AGG | + | chr4.1:9682975-9682994 | MS.gene70340:intron | 30.0% | |
| GCGTTGTCAAGAATAATTTA+TGG | - | chr4.1:9681848-9681867 | None:intergenic | 30.0% | |
| GGAACTTATATTAGAAAGAG+CGG | - | chr4.1:9683233-9683252 | None:intergenic | 30.0% | |
| GTTTGTGTAGTTGAATATTG+TGG | + | chr4.1:9680909-9680928 | MS.gene70340:intron | 30.0% | |
| TACCACCTTAAATATTGAAC+AGG | - | chr4.1:9682054-9682073 | None:intergenic | 30.0% | |
| TATACTACATAGTACATACC+TGG | - | chr4.1:9682025-9682044 | None:intergenic | 30.0% | |
| TCATCTTTACTGAAACACAT+TGG | - | chr4.1:9683355-9683374 | None:intergenic | 30.0% | |
| TCTAATGAGGTTTATTAAGC+AGG | + | chr4.1:9682386-9682405 | MS.gene70340:intron | 30.0% | |
| TCTCTTGTGTTATAGTATGA+TGG | + | chr4.1:9681179-9681198 | MS.gene70340:intron | 30.0% | |
| TGATATAGTTACAATGGCAA+AGG | + | chr4.1:9682282-9682301 | MS.gene70340:CDS | 30.0% | |
| TGCTTAATAAACCTCATTAG+AGG | - | chr4.1:9682387-9682406 | None:intergenic | 30.0% | |
| TTTGCCATTGTAACTATATC+AGG | - | chr4.1:9682283-9682302 | None:intergenic | 30.0% | |
| ! | ACTCAAAACTAGTTCTCATT+TGG | + | chr4.1:9681695-9681714 | MS.gene70340:intron | 30.0% |
| ! | ATGATCCTTTTGAATCCAAT+AGG | + | chr4.1:9681497-9681516 | MS.gene70340:intron | 30.0% |
| ! | ATTGTCAACTTTTGAATTGC+AGG | + | chr4.1:9681258-9681277 | MS.gene70340:intron | 30.0% |
| ! | CATTGGAATAAAACTTTTGC+TGG | - | chr4.1:9683447-9683466 | None:intergenic | 30.0% |
| ! | TTATTTAGTTCCTGAAACCT+TGG | + | chr4.1:9682329-9682348 | MS.gene70340:intron | 30.0% |
| ! | TTCATATGGATTGTAGAACT+TGG | + | chr4.1:9683277-9683296 | MS.gene70340:intron | 30.0% |
| !! | GTCTTGTTTGAAAAACTTAG+AGG | + | chr4.1:9683174-9683193 | MS.gene70340:CDS | 30.0% |
| !! | TTGTTTTACTCATTTGAGGA+CGG | + | chr4.1:9681629-9681648 | MS.gene70340:intron | 30.0% |
| !! | TTTCTAGCTATCTATGTACA+TGG | + | chr4.1:9682906-9682925 | MS.gene70340:intron | 30.0% |
| !!! | ACAACGCATTGATTCTTTTA+GGG | + | chr4.1:9681861-9681880 | MS.gene70340:intron | 30.0% |
| !!! | CAACTTGTTTTACTCATTTG+AGG | + | chr4.1:9681625-9681644 | MS.gene70340:intron | 30.0% |
| !!! | GTTATTTTTCCTAAATGTGG+TGG | + | chr4.1:9681565-9681584 | MS.gene70340:intron | 30.0% |
| AAATCTGCAAGCAAAGAGAA+TGG | - | chr4.1:9683471-9683490 | None:intergenic | 35.0% | |
| AAATGAATTGGCAATGCTGA+TGG | + | chr4.1:9681312-9681331 | MS.gene70340:CDS | 35.0% | |
| AAGTTTACTCTGCTCAAAGA+TGG | - | chr4.1:9681043-9681062 | None:intergenic | 35.0% | |
| ACATATCATGATCAGTTACC+AGG | - | chr4.1:9682968-9682987 | None:intergenic | 35.0% | |
| AGATTGTATACCGGTAATCT+TGG | + | chr4.1:9681337-9681356 | MS.gene70340:CDS | 35.0% | |
| AGCATGGTGTAGATAAATAG+TGG | - | chr4.1:9681079-9681098 | None:intergenic | 35.0% | |
| AGTATATGACATTGTACACG+AGG | + | chr4.1:9682168-9682187 | MS.gene70340:CDS | 35.0% | |
| ATTCATAGCTGAAACAATCC+AGG | + | chr4.1:9682004-9682023 | MS.gene70340:CDS | 35.0% | |
| CAATATCTGTATGATGAAGC+TGG | + | chr4.1:9680943-9680962 | MS.gene70340:CDS | 35.0% | |
| CTTTGTCATAGAATAGTCCA+AGG | - | chr4.1:9683505-9683524 | None:intergenic | 35.0% | |
| GACATCTTTAGCATAGCTAT+TGG | - | chr4.1:9681943-9681962 | None:intergenic | 35.0% | |
| GATTCAAAAGGATCATATGC+AGG | - | chr4.1:9681493-9681512 | None:intergenic | 35.0% | |
| GCACTTCAAATGCATAACTA+AGG | - | chr4.1:9682357-9682376 | None:intergenic | 35.0% | |
| GTATTTCCATGTGTTAAGAG+CGG | - | chr4.1:9681419-9681438 | None:intergenic | 35.0% | |
| GTGTAGTTGAATATTGTGGA+GGG | + | chr4.1:9680913-9680932 | MS.gene70340:intron | 35.0% | |
| GTTGTTCTGTAATAGGGTAT+TGG | + | chr4.1:9682592-9682611 | MS.gene70340:intron | 35.0% | |
| TAACGCCTATTGGATTCAAA+AGG | - | chr4.1:9681505-9681524 | None:intergenic | 35.0% | |
| TCTTTACTGAAACACATTGG+TGG | - | chr4.1:9683352-9683371 | None:intergenic | 35.0% | |
| TGATAGAAATGGAACAAGGA+AGG | - | chr4.1:9680797-9680816 | None:intergenic | 35.0% | |
| TGTAGTTGAATATTGTGGAG+GGG | + | chr4.1:9680914-9680933 | MS.gene70340:intron | 35.0% | |
| TGTGTAGTTGAATATTGTGG+AGG | + | chr4.1:9680912-9680931 | MS.gene70340:intron | 35.0% | |
| TTTCACCATGGCTTATTCTA+GGG | + | chr4.1:9682103-9682122 | MS.gene70340:intron | 35.0% | |
| ! | AGTTTGATGATAGGAACTGA+CGG | - | chr4.1:9680825-9680844 | None:intergenic | 35.0% |
| ! | TCCAAGACCATATTGACTAT+GGG | + | chr4.1:9681961-9681980 | MS.gene70340:CDS | 35.0% |
| ! | TCTTTGAGGAATGCATATCA+TGG | + | chr4.1:9681367-9681386 | MS.gene70340:CDS | 35.0% |
| ! | TTTAAGATTTCCAGGCATCT+TGG | - | chr4.1:9681130-9681149 | None:intergenic | 35.0% |
| ! | TTTGCTTGCAGATTTTCTTG+TGG | + | chr4.1:9683476-9683495 | MS.gene70340:intron | 35.0% |
| ! | TTTTCACCATGGCTTATTCT+AGG | + | chr4.1:9682102-9682121 | MS.gene70340:intron | 35.0% |
| !! | CTCTGGTTTGTTAATGTGTT+GGG | + | chr4.1:9681231-9681250 | MS.gene70340:intron | 35.0% |
| !! | TACATGGATTCTTAGGTTGA+GGG | + | chr4.1:9682922-9682941 | MS.gene70340:intron | 35.0% |
| !! | TGACTCACTTTAAGATTTCC+AGG | - | chr4.1:9681138-9681157 | None:intergenic | 35.0% |
| !! | TGGTTCTGAAGCAAATGAAT+TGG | + | chr4.1:9681300-9681319 | MS.gene70340:CDS | 35.0% |
| !!! | GACAACGCATTGATTCTTTT+AGG | + | chr4.1:9681860-9681879 | MS.gene70340:intron | 35.0% |
| !!! | GATTTTTTATGACCAGCGTT+TGG | + | chr4.1:9681717-9681736 | MS.gene70340:intron | 35.0% |
| !!! | TGACGGGTTTTTGATAGAAA+TGG | - | chr4.1:9680808-9680827 | None:intergenic | 35.0% |
| AAGAAACAAACCTCAGGAAG+TGG | - | chr4.1:9681442-9681461 | None:intergenic | 40.0% | |
| AGAAACAAACCTCAGGAAGT+GGG | - | chr4.1:9681441-9681460 | None:intergenic | 40.0% | |
| AGCATGAAGAAACAAACCTC+AGG | - | chr4.1:9681448-9681467 | None:intergenic | 40.0% | |
| AGGTCTGCATGCAAGTAAAT+CGG | - | chr4.1:9680624-9680643 | None:intergenic | 40.0% | |
| ATATGATTGCATGATGCCTC+TGG | + | chr4.1:9681214-9681233 | MS.gene70340:intron | 40.0% | |
| ATTGCAGATGAAGTGCAAAC+TGG | + | chr4.1:9682205-9682224 | MS.gene70340:CDS | 40.0% | |
| CAAGCAAAGAGAATGGTCAT+TGG | - | chr4.1:9683464-9683483 | None:intergenic | 40.0% | |
| CAGGCTCAAATCAAGTAATG+AGG | - | chr4.1:9682949-9682968 | None:intergenic | 40.0% | |
| CCAACACATTAACAAACCAG+AGG | - | chr4.1:9681233-9681252 | None:intergenic | 40.0% | |
| CTGAAGTCCCATAGTCAATA+TGG | - | chr4.1:9681971-9681990 | None:intergenic | 40.0% | |
| CTGATGGCAAGATTGTATAC+CGG | + | chr4.1:9681328-9681347 | MS.gene70340:CDS | 40.0% | |
| GAAAAACAAGACACCTGCAA+AGG | + | chr4.1:9683140-9683159 | MS.gene70340:CDS | 40.0% | |
| GATGAAGTGCAAACTGGATT+TGG | + | chr4.1:9682211-9682230 | MS.gene70340:CDS | 40.0% | |
| GTTGTAACTACAGCTCCTAA+TGG | - | chr4.1:9682628-9682647 | None:intergenic | 40.0% | |
| TAAATCGGAACGGTTAGGTT+TGG | - | chr4.1:9680609-9680628 | None:intergenic | 40.0% | |
| TATCTATGATCAGCCCACAA+AGG | - | chr4.1:9681744-9681763 | None:intergenic | 40.0% | |
| TCCAGAAATTGCAAGTGTGA+TGG | + | chr4.1:9682648-9682667 | MS.gene70340:CDS | 40.0% | |
| TCCCATAGTCAATATGGTCT+TGG | - | chr4.1:9681965-9681984 | None:intergenic | 40.0% | |
| TGCATGCAAGTAAATCGGAA+CGG | - | chr4.1:9680619-9680638 | None:intergenic | 40.0% | |
| TGTTTCAGTAAAGATGACGC+AGG | + | chr4.1:9683358-9683377 | MS.gene70340:CDS | 40.0% | |
| TTCACCATGGCTTATTCTAG+GGG | + | chr4.1:9682104-9682123 | MS.gene70340:intron | 40.0% | |
| TTGAGGAATGCATATCATGG+AGG | + | chr4.1:9681370-9681389 | MS.gene70340:CDS | 40.0% | |
| TTTCCTAAATGTGGTGGTTG+CGG | + | chr4.1:9681571-9681590 | MS.gene70340:intron | 40.0% | |
| ! | AATGCATAACTAAGGTGCCA+AGG | - | chr4.1:9682349-9682368 | None:intergenic | 40.0% |
| ! | AGATTTTCTTGTGGATGCCT+TGG | + | chr4.1:9683485-9683504 | MS.gene70340:intron | 40.0% |
| ! | ATTGGCAATGGTTTGCCATT+AGG | + | chr4.1:9682610-9682629 | MS.gene70340:CDS | 40.0% |
| ! | CATATTGACTATGGGACTTC+AGG | + | chr4.1:9681969-9681988 | MS.gene70340:CDS | 40.0% |
| ! | CTCATTACTTGATTTGAGCC+TGG | + | chr4.1:9682947-9682966 | MS.gene70340:intron | 40.0% |
| ! | GACTGCATGGAAATGTTTTC+AGG | + | chr4.1:9683320-9683339 | MS.gene70340:CDS | 40.0% |
| ! | GGAGGAAGTTCTAGTACAAT+GGG | + | chr4.1:9681388-9681407 | MS.gene70340:CDS | 40.0% |
| ! | GTACATGGATTCTTAGGTTG+AGG | + | chr4.1:9682921-9682940 | MS.gene70340:intron | 40.0% |
| ! | GTCCAAGACCATATTGACTA+TGG | + | chr4.1:9681960-9681979 | MS.gene70340:CDS | 40.0% |
| ! | GTGGGCTGATCATAGATATT+AGG | + | chr4.1:9681746-9681765 | MS.gene70340:intron | 40.0% |
| ! | GTTACCTTGATGCTTTTGCT+GGG | + | chr4.1:9680971-9680990 | MS.gene70340:CDS | 40.0% |
| ! | GTTTGATGATAGGAACTGAC+GGG | - | chr4.1:9680824-9680843 | None:intergenic | 40.0% |
| ! | TAGAACTTGGCATTCTAGCT+GGG | + | chr4.1:9683290-9683309 | MS.gene70340:intron | 40.0% |
| ! | TGGAGGAAGTTCTAGTACAA+TGG | + | chr4.1:9681387-9681406 | MS.gene70340:CDS | 40.0% |
| !! | CCTCTGGTTTGTTAATGTGT+TGG | + | chr4.1:9681230-9681249 | MS.gene70340:intron | 40.0% |
| !! | CTGTAATAGGGTATTGGCAA+TGG | + | chr4.1:9682598-9682617 | MS.gene70340:intron | 40.0% |
| !!! | TTGCAGGTGTCTTGTTTTTC+CGG | - | chr4.1:9683140-9683159 | None:intergenic | 40.0% |
| AAGATTTCCAGGCATCTTGG+CGG | - | chr4.1:9681127-9681146 | None:intergenic | 45.0% | |
| ACGCTTGGCGAATACTTCAT+CGG | - | chr4.1:9680759-9680778 | None:intergenic | 45.0% | |
| ATGGAAATACCCACTTCCTG+AGG | + | chr4.1:9681429-9681448 | MS.gene70340:CDS | 45.0% | |
| GATGGTCCATTATACGGATG+AGG | - | chr4.1:9680734-9680753 | None:intergenic | 45.0% | |
| GCAAGTAAATCGGAACGGTT+AGG | - | chr4.1:9680614-9680633 | None:intergenic | 45.0% | |
| GCCATCACACTTGCAATTTC+TGG | - | chr4.1:9682652-9682671 | None:intergenic | 45.0% | |
| GTAGAACTTGGCATTCTAGC+TGG | + | chr4.1:9683289-9683308 | MS.gene70340:intron | 45.0% | |
| GTGTCTCGAATCCCCAATAA+TGG | - | chr4.1:9682249-9682268 | None:intergenic | 45.0% | |
| TATGACATTGTACACGAGGC+TGG | + | chr4.1:9682172-9682191 | MS.gene70340:CDS | 45.0% | |
| TATTGGGGATTCGAGACACA+GGG | + | chr4.1:9682250-9682269 | MS.gene70340:CDS | 45.0% | |
| TCACCATGGCTTATTCTAGG+GGG | + | chr4.1:9682105-9682124 | MS.gene70340:intron | 45.0% | |
| TCAGTAAAGATGACGCAGGT+AGG | + | chr4.1:9683362-9683381 | MS.gene70340:intron | 45.0% | |
| TTATTGGGGATTCGAGACAC+AGG | + | chr4.1:9682249-9682268 | MS.gene70340:CDS | 45.0% | |
| ! | AACTAAGGTGCCAAGGTTTC+AGG | - | chr4.1:9682342-9682361 | None:intergenic | 45.0% |
| ! | CGTTACCTTGATGCTTTTGC+TGG | + | chr4.1:9680970-9680989 | MS.gene70340:CDS | 45.0% |
| !! | AGGTTCTGGATAACGAGAAG+CGG | + | chr4.1:9682740-9682759 | MS.gene70340:CDS | 45.0% |
| !! | CAATCCCAGCAAAAGCATCA+AGG | - | chr4.1:9680978-9680997 | None:intergenic | 45.0% |
| !! | CTCAGTCATTGGTGATGTGA+GGG | + | chr4.1:9683077-9683096 | MS.gene70340:intron | 45.0% |
| !! | GGGATTGTTACTGTTTCTGC+TGG | + | chr4.1:9680991-9681010 | MS.gene70340:CDS | 45.0% |
| !! | TCAGTCATTGGTGATGTGAG+GGG | + | chr4.1:9683078-9683097 | MS.gene70340:intron | 45.0% |
| !! | TCTCAGTCATTGGTGATGTG+AGG | + | chr4.1:9683076-9683095 | MS.gene70340:intron | 45.0% |
| !!! | AGGTGTCTTGTTTTTCCGGT+CGG | - | chr4.1:9683136-9683155 | None:intergenic | 45.0% |
| AATGGAACAAGGAAGGACCG+AGG | - | chr4.1:9680790-9680809 | None:intergenic | 50.0% | |
| ACAGCAGTTTCAGCCTTTGC+AGG | - | chr4.1:9683156-9683175 | None:intergenic | 50.0% | |
| ACCAGCGTTTGGACCTTTGT+GGG | + | chr4.1:9681728-9681747 | MS.gene70340:intron | 50.0% | |
| ACCGAGGAACTGTTTACGCT+TGG | - | chr4.1:9680774-9680793 | None:intergenic | 50.0% | |
| ACTTGCAGTGCTCAAGGTTC+TGG | + | chr4.1:9682726-9682745 | MS.gene70340:CDS | 50.0% | |
| AGGGGAAGAGGACTAATGCT+GGG | + | chr4.1:9683096-9683115 | MS.gene70340:CDS | 50.0% | |
| AGTAGTGATGGTTTGAGGGG+CGG | - | chr4.1:9680681-9680700 | None:intergenic | 50.0% | |
| AGTCCGCAACCACCACATTT+AGG | - | chr4.1:9681577-9681596 | None:intergenic | 50.0% | |
| ATGAATCCAGACCCATACCG+TGG | + | chr4.1:9681900-9681919 | MS.gene70340:CDS | 50.0% | |
| CAACCCCCTAGAATAAGCCA+TGG | - | chr4.1:9682111-9682130 | None:intergenic | 50.0% | |
| CACCAAAGACTCCACGGTAT+GGG | - | chr4.1:9681914-9681933 | None:intergenic | 50.0% | |
| CACCAGCCTCATCCGTATAA+TGG | + | chr4.1:9680725-9680744 | MS.gene70340:CDS | 50.0% | |
| CATCTGCACCAAAGACTCCA+CGG | - | chr4.1:9681920-9681939 | None:intergenic | 50.0% | |
| CCCAATAATGGCTTCCTGTG+CGG | - | chr4.1:9682237-9682256 | None:intergenic | 50.0% | |
| CCGCACAGGAAGCCATTATT+GGG | + | chr4.1:9682234-9682253 | MS.gene70340:CDS | 50.0% | |
| CGCACAGGAAGCCATTATTG+GGG | + | chr4.1:9682235-9682254 | MS.gene70340:CDS | 50.0% | |
| CGGAGTAGTGATGGTTTGAG+GGG | - | chr4.1:9680684-9680703 | None:intergenic | 50.0% | |
| CGGCGAAATCAGCAATAGCA+TGG | - | chr4.1:9681095-9681114 | None:intergenic | 50.0% | |
| CTTGGCGAATACTTCATCGG+CGG | - | chr4.1:9680756-9680775 | None:intergenic | 50.0% | |
| GAGGATCGGAGAGAAGAGAA+AGG | - | chr4.1:9680644-9680663 | None:intergenic | 50.0% | |
| GCCAAGCGTAAACAGTTCCT+CGG | + | chr4.1:9680770-9680789 | MS.gene70340:CDS | 50.0% | |
| GCGGAGTAGTGATGGTTTGA+GGG | - | chr4.1:9680685-9680704 | None:intergenic | 50.0% | |
| GGGACTTCAGGAAAAGTTGC+TGG | + | chr4.1:9681981-9682000 | MS.gene70340:CDS | 50.0% | |
| GTCCATTATACGGATGAGGC+TGG | - | chr4.1:9680730-9680749 | None:intergenic | 50.0% | |
| GTCTCACCGCTCTTAACACA+TGG | + | chr4.1:9681410-9681429 | MS.gene70340:CDS | 50.0% | |
| GTGATCTCAAACGCTCAAGC+AGG | - | chr4.1:9682795-9682814 | None:intergenic | 50.0% | |
| GTGCAGCATTGCCTCTAATG+AGG | + | chr4.1:9682373-9682392 | MS.gene70340:intron | 50.0% | |
| TCGGCGGATGGTCCATTATA+CGG | - | chr4.1:9680740-9680759 | None:intergenic | 50.0% | |
| ! | CATGGCTTATTCTAGGGGGT+TGG | + | chr4.1:9682109-9682128 | MS.gene70340:intron | 50.0% |
| ! | CTTGGCATTCTAGCTGGGAA+AGG | + | chr4.1:9683295-9683314 | MS.gene70340:CDS | 50.0% |
| !! | ATTGGTGATGTGAGGGGAAG+AGG | + | chr4.1:9683084-9683103 | MS.gene70340:CDS | 50.0% |
| !! | TGCTATTGCTGATTTCGCCG+AGG | + | chr4.1:9681095-9681114 | MS.gene70340:CDS | 50.0% |
| AAGACTCCACGGTATGGGTC+TGG | - | chr4.1:9681909-9681928 | None:intergenic | 55.0% | |
| AAGTCCCCCGGCAGAACATA+CGG | - | chr4.1:9682710-9682729 | None:intergenic | 55.0% | |
| AATCTGCGGCGGAGTAGTGA+TGG | - | chr4.1:9680693-9680712 | None:intergenic | 55.0% | |
| CAAACTGGATTTGGCCGCAC+AGG | + | chr4.1:9682220-9682239 | MS.gene70340:CDS | 55.0% | |
| GACATTGTACACGAGGCTGG+TGG | + | chr4.1:9682175-9682194 | MS.gene70340:CDS | 55.0% | |
| GACCAGCGTTTGGACCTTTG+TGG | + | chr4.1:9681727-9681746 | MS.gene70340:intron | 55.0% | |
| GACCCATACCGTGGAGTCTT+TGG | + | chr4.1:9681909-9681928 | MS.gene70340:CDS | 55.0% | |
| GAGGGGAAGAGGACTAATGC+TGG | + | chr4.1:9683095-9683114 | MS.gene70340:CDS | 55.0% | |
| GCACCAAAGACTCCACGGTA+TGG | - | chr4.1:9681915-9681934 | None:intergenic | 55.0% | |
| GCCGCACAGGAAGCCATTAT+TGG | + | chr4.1:9682233-9682252 | MS.gene70340:CDS | 55.0% | |
| GCGAATACTTCATCGGCGGA+TGG | - | chr4.1:9680752-9680771 | None:intergenic | 55.0% | |
| GGAGCAGTTGAACTCGTACC+TGG | + | chr4.1:9682133-9682152 | MS.gene70340:CDS | 55.0% | |
| GGATGAGGCTGGTGATCGAA+CGG | - | chr4.1:9680719-9680738 | None:intergenic | 55.0% | |
| GGCGGAGTAGTGATGGTTTG+AGG | - | chr4.1:9680686-9680705 | None:intergenic | 55.0% | |
| GGGAAGAGGACTAATGCTGG+GGG | + | chr4.1:9683098-9683117 | MS.gene70340:CDS | 55.0% | |
| GGGGAAGAGGACTAATGCTG+GGG | + | chr4.1:9683097-9683116 | MS.gene70340:CDS | 55.0% | |
| TCTGGATAACGAGAAGCGGC+AGG | + | chr4.1:9682744-9682763 | MS.gene70340:CDS | 55.0% | |
| TGATCGAACGGCGGAATCTG+CGG | - | chr4.1:9680707-9680726 | None:intergenic | 55.0% | |
| ! | CAGGCTCATTGCGCTGATGT+TGG | + | chr4.1:9682763-9682782 | MS.gene70340:CDS | 55.0% |
| ! | GGCATTCTAGCTGGGAAAGG+AGG | + | chr4.1:9683298-9683317 | MS.gene70340:CDS | 55.0% |
| ! | GGCTTATTCTAGGGGGTTGG+AGG | + | chr4.1:9682112-9682131 | MS.gene70340:intron | 55.0% |
| !! | GGGTAGAGCTTGTTACCGAC+CGG | + | chr4.1:9683118-9683137 | MS.gene70340:CDS | 55.0% |
| !! | TGCTGATTTCGCCGAGGCTT+TGG | + | chr4.1:9681101-9681120 | MS.gene70340:CDS | 55.0% |
| AACCCCGTATGTTCTGCCGG+GGG | + | chr4.1:9682703-9682722 | MS.gene70340:CDS | 60.0% | |
| AGTCCCCCGGCAGAACATAC+GGG | - | chr4.1:9682709-9682728 | None:intergenic | 60.0% | |
| AGTGATGGTTTGAGGGGCGG+TGG | - | chr4.1:9680678-9680697 | None:intergenic | 60.0% | |
| CATCTTGGCGGCCAAAGCCT+CGG | - | chr4.1:9681115-9681134 | None:intergenic | 60.0% | |
| GAACCCCGTATGTTCTGCCG+GGG | + | chr4.1:9682702-9682721 | MS.gene70340:CDS | 60.0% | |
| GCCCACAAAGGTCCAAACGC+TGG | - | chr4.1:9681732-9681751 | None:intergenic | 60.0% | |
| GCTGGGAAAGGAGGACTGCA+TGG | + | chr4.1:9683307-9683326 | MS.gene70340:CDS | 60.0% | |
| GGAACCCCGTATGTTCTGCC+GGG | + | chr4.1:9682701-9682720 | MS.gene70340:CDS | 60.0% | |
| GGGAACCCCGTATGTTCTGC+CGG | + | chr4.1:9682700-9682719 | MS.gene70340:CDS | 60.0% | |
| TGAGGCTGGTGATCGAACGG+CGG | - | chr4.1:9680716-9680735 | None:intergenic | 60.0% | |
| ! | CTTGAGCACTGCAAGTCCCC+CGG | - | chr4.1:9682722-9682741 | None:intergenic | 60.0% |
| CGGGGGACTTGCAGTGCTCA+AGG | + | chr4.1:9682720-9682739 | MS.gene70340:CDS | 65.0% | |
| GATGGTTTGAGGGGCGGTGG+CGG | - | chr4.1:9680675-9680694 | None:intergenic | 65.0% | |
| GCTTTGGCCGCCAAGATGCC+TGG | + | chr4.1:9681117-9681136 | MS.gene70340:CDS | 65.0% | |
| GTCCCCCGGCAGAACATACG+GGG | - | chr4.1:9682708-9682727 | None:intergenic | 65.0% | |
| TCGAACGGCGGAATCTGCGG+CGG | - | chr4.1:9680704-9680723 | None:intergenic | 65.0% | |
| !! | TGGCGGTGGCGGAGGAGGAT+CGG | - | chr4.1:9680658-9680677 | None:intergenic | 70.0% |
| ! | GGTTTGAGGGGCGGTGGCGG+TGG | - | chr4.1:9680672-9680691 | None:intergenic | 75.0% |
| ! | TTGAGGGGCGGTGGCGGTGG+CGG | - | chr4.1:9680669-9680688 | None:intergenic | 75.0% |
| !! | AGGGGCGGTGGCGGTGGCGG+AGG | - | chr4.1:9680666-9680685 | None:intergenic | 85.0% |
| !!! | GGCGGTGGCGGTGGCGGAGG+AGG | - | chr4.1:9680663-9680682 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9680572 | 9683530 | 9680572 | ID=MS.gene70340 |
| chr4.1 | mRNA | 9680572 | 9683530 | 9680572 | ID=MS.gene70340.t1;Parent=MS.gene70340 |
| chr4.1 | exon | 9680572 | 9680823 | 9680572 | ID=MS.gene70340.t1.exon1;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9680572 | 9680823 | 9680572 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9680919 | 9681149 | 9680919 | ID=MS.gene70340.t1.exon2;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9680919 | 9681149 | 9680919 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9681280 | 9681450 | 9681280 | ID=MS.gene70340.t1.exon3;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9681280 | 9681450 | 9681280 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9681882 | 9682025 | 9681882 | ID=MS.gene70340.t1.exon4;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9681882 | 9682025 | 9681882 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9682124 | 9682303 | 9682124 | ID=MS.gene70340.t1.exon5;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9682124 | 9682303 | 9682124 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9682607 | 9682832 | 9682607 | ID=MS.gene70340.t1.exon6;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9682607 | 9682832 | 9682607 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9683082 | 9683195 | 9683082 | ID=MS.gene70340.t1.exon7;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9683082 | 9683195 | 9683082 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9683293 | 9683379 | 9683293 | ID=MS.gene70340.t1.exon8;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9683293 | 9683379 | 9683293 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| chr4.1 | exon | 9683487 | 9683530 | 9683487 | ID=MS.gene70340.t1.exon9;Parent=MS.gene70340.t1 |
| chr4.1 | CDS | 9683487 | 9683530 | 9683487 | ID=cds.MS.gene70340.t1;Parent=MS.gene70340.t1 |
| Gene Sequence |
| Protein sequence |
