Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28125.t1 | XP_003630095.1 | 95.9 | 484 | 17 | 1 | 1 | 484 | 1 | 481 | 9.00E-269 | 935.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28125.t1 | Q940M2 | 81.2 | 484 | 83 | 2 | 1 | 484 | 1 | 476 | 7.5e-232 | 804.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28125.t1 | B7FLF5 | 95.9 | 484 | 17 | 1 | 1 | 484 | 1 | 481 | 6.5e-269 | 935.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049265 | MS.gene28125 | 0.811401 | 7.13E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene28125 | -0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene050809 | MS.gene28125 | 0.843667 | 1.22E-58 | -1.69E-46 |
| MS.gene05104 | MS.gene28125 | 0.820042 | 8.45E-53 | -1.69E-46 |
| MS.gene053916 | MS.gene28125 | -0.803092 | 4.11E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene28125 | 0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene28125 | 0.803807 | 2.92E-49 | -1.69E-46 |
| MS.gene059699 | MS.gene28125 | 0.916635 | 1.40E-85 | -1.69E-46 |
| MS.gene059701 | MS.gene28125 | 0.869812 | 2.34E-66 | -1.69E-46 |
| MS.gene059703 | MS.gene28125 | 0.903405 | 3.59E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87756 | MS.gene28125 | PPI |
| MS.gene043742 | MS.gene28125 | PPI |
| MS.gene87050 | MS.gene28125 | PPI |
| MS.gene28125 | MS.gene28928 | PPI |
| MS.gene08300 | MS.gene28125 | PPI |
| MS.gene26019 | MS.gene28125 | PPI |
| MS.gene34910 | MS.gene28125 | PPI |
| MS.gene42086 | MS.gene28125 | PPI |
| MS.gene010912 | MS.gene28125 | PPI |
| MS.gene031835 | MS.gene28125 | PPI |
| MS.gene050272 | MS.gene28125 | PPI |
| MS.gene052375 | MS.gene28125 | PPI |
| MS.gene023325 | MS.gene28125 | PPI |
| MS.gene28125 | MS.gene003378 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28125.t1 | MTR_8g091660 | 97.938 | 485 | 5 | 2 | 1 | 484 | 1 | 481 | 0.0 | 976 |
| MS.gene28125.t1 | MTR_7g072420 | 61.331 | 481 | 181 | 1 | 4 | 484 | 6 | 481 | 0.0 | 637 |
| MS.gene28125.t1 | MTR_3g465800 | 60.746 | 456 | 179 | 0 | 29 | 484 | 18 | 473 | 0.0 | 603 |
| MS.gene28125.t1 | MTR_3g465800 | 64.824 | 398 | 140 | 0 | 87 | 484 | 5 | 402 | 0.0 | 562 |
| MS.gene28125.t1 | MTR_7g451450 | 27.386 | 482 | 296 | 10 | 26 | 481 | 10 | 463 | 2.05e-45 | 165 |
| MS.gene28125.t1 | MTR_4g076100 | 27.857 | 420 | 263 | 14 | 86 | 474 | 81 | 491 | 1.41e-35 | 139 |
| MS.gene28125.t1 | MTR_4g076100 | 28.487 | 337 | 204 | 13 | 166 | 474 | 20 | 347 | 6.90e-29 | 117 |
| MS.gene28125.t1 | MTR_3g465840 | 61.972 | 71 | 27 | 0 | 99 | 169 | 76 | 146 | 2.67e-26 | 104 |
| MS.gene28125.t1 | MTR_7g031840 | 36.019 | 211 | 88 | 6 | 287 | 481 | 35 | 214 | 4.84e-25 | 103 |
| MS.gene28125.t1 | MTR_3g089960 | 32.900 | 231 | 70 | 7 | 294 | 484 | 20 | 205 | 7.57e-23 | 97.8 |
| MS.gene28125.t1 | MTR_3g118070 | 25.672 | 409 | 255 | 16 | 19 | 406 | 11 | 391 | 2.51e-18 | 87.8 |
| MS.gene28125.t1 | MTR_3g118070 | 26.048 | 334 | 218 | 10 | 85 | 406 | 18 | 334 | 3.45e-18 | 87.0 |
| MS.gene28125.t1 | MTR_4g045917 | 44.444 | 117 | 32 | 4 | 330 | 446 | 8 | 91 | 9.14e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28125.t1 | AT4G39660 | 81.818 | 484 | 80 | 2 | 1 | 484 | 1 | 476 | 0.0 | 828 |
| MS.gene28125.t1 | AT4G39660 | 87.186 | 398 | 51 | 0 | 87 | 484 | 4 | 401 | 0.0 | 738 |
| MS.gene28125.t1 | AT3G08860 | 60.744 | 484 | 184 | 1 | 1 | 484 | 4 | 481 | 0.0 | 642 |
| MS.gene28125.t1 | AT3G08860 | 60.851 | 470 | 178 | 1 | 1 | 470 | 4 | 467 | 0.0 | 621 |
| MS.gene28125.t1 | AT2G38400 | 61.926 | 457 | 173 | 1 | 28 | 484 | 22 | 477 | 0.0 | 620 |
| MS.gene28125.t1 | AT2G38400 | 60.793 | 454 | 177 | 1 | 28 | 481 | 22 | 474 | 0.0 | 602 |
| MS.gene28125.t1 | AT1G80600 | 30.097 | 412 | 251 | 9 | 82 | 484 | 73 | 456 | 1.26e-51 | 182 |
| MS.gene28125.t1 | AT5G46180 | 28.774 | 424 | 261 | 14 | 78 | 484 | 51 | 450 | 1.89e-39 | 149 |
| MS.gene28125.t1 | AT3G22200 | 27.578 | 417 | 269 | 13 | 86 | 474 | 70 | 481 | 5.77e-38 | 145 |
| MS.gene28125.t1 | AT3G22200 | 27.578 | 417 | 269 | 13 | 86 | 474 | 79 | 490 | 6.70e-38 | 145 |
| MS.gene28125.t1 | AT3G48730 | 25.000 | 376 | 239 | 13 | 20 | 377 | 14 | 364 | 1.41e-17 | 85.5 |
| MS.gene28125.t1 | AT5G63570 | 26.821 | 302 | 192 | 11 | 85 | 375 | 81 | 364 | 1.19e-15 | 79.7 |
| MS.gene28125.t1 | AT5G63570 | 26.821 | 302 | 192 | 11 | 85 | 375 | 18 | 301 | 1.41e-15 | 79.0 |
Find 135 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCACACTTGCAATTTC+TGG | 0.096360 | 4.4:-9945207 | None:intergenic |
| ATGTATTGAATTGAATCTTC+TGG | 0.253389 | 4.4:-9945230 | None:intergenic |
| AAGATGGCATTCAAAATATC+AGG | 0.254872 | 4.4:-9943581 | None:intergenic |
| GCCGCACAGGAAGCCATTAT+TGG | 0.257614 | 4.4:+9944791 | MS.gene28125:CDS |
| TTTGCCATTGTAACTATATC+AGG | 0.279616 | 4.4:-9944838 | None:intergenic |
| ACTTGCAGTGCTCAAGGTTC+TGG | 0.300527 | 4.4:+9945284 | MS.gene28125:CDS |
| TGCTGATTTCGCCGAGGCTT+TGG | 0.324826 | 4.4:+9943658 | MS.gene28125:CDS |
| ATTGGCAATGGTTTGCCATT+AGG | 0.331757 | 4.4:+9945168 | MS.gene28125:CDS |
| GTCCAAGACCATATTGACTA+TGG | 0.338821 | 4.4:+9944518 | MS.gene28125:CDS |
| TGACTCACTTTAAGATTTCC+AGG | 0.342658 | 4.4:-9943692 | None:intergenic |
| AAGATTCAATTCAATACATT+TGG | 0.343865 | 4.4:+9945234 | MS.gene28125:CDS |
| CCGCACAGGAAGCCATTATT+GGG | 0.343964 | 4.4:+9944792 | MS.gene28125:CDS |
| CACCAGCCTCATCCGTATAA+TGG | 0.348055 | 4.4:+9943282 | MS.gene28125:CDS |
| CATATTGACTATGGGACTTC+AGG | 0.361967 | 4.4:+9944527 | MS.gene28125:CDS |
| GGTTTGAGTGGCGGTGGCGG+TGG | 0.364079 | 4.4:-9943226 | None:intergenic |
| GACCCATACCGTGGAGTCTT+TGG | 0.367976 | 4.4:+9944467 | MS.gene28125:CDS |
| TTGAGTGGCGGTGGCGGTGG+AGG | 0.377277 | 4.4:-9943223 | None:intergenic |
| GGGAACCCCGTATGTTCTGC+CGG | 0.378650 | 4.4:+9945258 | MS.gene28125:CDS |
| GACATCTTTAGCATAGCTAT+TGG | 0.380021 | 4.4:-9944498 | None:intergenic |
| GATGAAGTGCAAACTGGATT+TGG | 0.382596 | 4.4:+9944769 | MS.gene28125:CDS |
| GGGACTTCAGGAAAAGTTGC+TGG | 0.384171 | 4.4:+9944539 | MS.gene28125:CDS |
| TCGGCGGATGGTCCATTATA+CGG | 0.389198 | 4.4:-9943294 | None:intergenic |
| GGCGGTGGCGGTGGAGGAGG+AGG | 0.397560 | 4.4:-9943217 | None:intergenic |
| TGTATTGAATTGAATCTTCT+GGG | 0.397988 | 4.4:-9945229 | None:intergenic |
| AGTGGCGGTGGCGGTGGAGG+AGG | 0.399856 | 4.4:-9943220 | None:intergenic |
| CAGGCTCATTGCGCTGATGT+TGG | 0.409243 | 4.4:+9945321 | MS.gene28125:CDS |
| GCTTTGGCCGCCAAGATGCC+TGG | 0.409635 | 4.4:+9943674 | MS.gene28125:CDS |
| GTGTCTCGAATCCCCAATAA+TGG | 0.409809 | 4.4:-9944804 | None:intergenic |
| CTGAAGTCCCATAGTCAATA+TGG | 0.412467 | 4.4:-9944526 | None:intergenic |
| GTTGTTCTGTAATAGGGTAT+TGG | 0.414384 | 4.4:+9945150 | MS.gene28125:intron |
| GTAGAACTTGGCATTCTAGC+TGG | 0.420173 | 4.4:+9945847 | MS.gene28125:intron |
| AGAAATCATACCAAGATTAC+CGG | 0.422579 | 4.4:-9943907 | None:intergenic |
| GGGATTGTTACTGTTTCTGC+TGG | 0.423180 | 4.4:+9943548 | MS.gene28125:CDS |
| AAGAAACAAACCTCAGGAAG+TGG | 0.423458 | 4.4:-9943999 | None:intergenic |
| TGGTTCTGAAGCAAATGAAT+TGG | 0.427678 | 4.4:+9943860 | MS.gene28125:CDS |
| ACAGCAGTTTCAGCCTTTGC+AGG | 0.430454 | 4.4:-9945711 | None:intergenic |
| TTTAAGATTTCCAGGCATCT+TGG | 0.432518 | 4.4:-9943684 | None:intergenic |
| GGCGGTGGAGGAGGAGGAAG+AGG | 0.433036 | 4.4:-9943211 | None:intergenic |
| TAAATCGGAACGGTTAGGTT+TGG | 0.452559 | 4.4:-9943157 | None:intergenic |
| ATTGGTGATGTGAGGGGAAG+AGG | 0.455086 | 4.4:+9945642 | MS.gene28125:CDS |
| TCCCATAGTCAATATGGTCT+TGG | 0.460865 | 4.4:-9944520 | None:intergenic |
| AAGACTCCACGGTATGGGTC+TGG | 0.464064 | 4.4:-9944464 | None:intergenic |
| ATTCAATTCAATACATTTGG+TGG | 0.466618 | 4.4:+9945237 | MS.gene28125:CDS |
| GCAAGTAAATCGGAACGGTT+AGG | 0.469454 | 4.4:-9943162 | None:intergenic |
| ATCTTGGTATGATTTCTTTG+AGG | 0.472887 | 4.4:+9943913 | MS.gene28125:CDS |
| AGGTCTGCATGCAAGTAAAT+CGG | 0.473835 | 4.4:-9943172 | None:intergenic |
| GGAGGAAGTTCTAGTACAAT+GGG | 0.479315 | 4.4:+9943948 | MS.gene28125:CDS |
| GGAACCCCGTATGTTCTGCC+GGG | 0.483488 | 4.4:+9945259 | MS.gene28125:CDS |
| TGGAGGAAGTTCTAGTACAA+TGG | 0.484867 | 4.4:+9943947 | MS.gene28125:CDS |
| CATCTTGGCGGCCAAAGCCT+CGG | 0.487359 | 4.4:-9943669 | None:intergenic |
| AGATTGTATACCGGTAATCT+TGG | 0.491103 | 4.4:+9943897 | MS.gene28125:CDS |
| CTGTAATAGGGTATTGGCAA+TGG | 0.494645 | 4.4:+9945156 | MS.gene28125:intron |
| GCACCAAAGACTCCACGGTA+TGG | 0.496972 | 4.4:-9944470 | None:intergenic |
| TCTTTGAGGAATGCATATCA+TGG | 0.501479 | 4.4:+9943927 | MS.gene28125:CDS |
| TTCAATTCAATACATTTGGT+GGG | 0.503313 | 4.4:+9945238 | MS.gene28125:CDS |
| GCCAAGCGTAAACAGTTCCT+TGG | 0.509408 | 4.4:+9943327 | MS.gene28125:CDS |
| CTCAGTCATTGGTGATGTGA+GGG | 0.509676 | 4.4:+9945635 | MS.gene28125:intron |
| TAGAACTTGGCATTCTAGCT+GGG | 0.511798 | 4.4:+9945848 | MS.gene28125:intron |
| GTTTGTGTAGTTGAATATTG+TGG | 0.514435 | 4.4:+9943466 | MS.gene28125:intron |
| ACCAAGGAACTGTTTACGCT+TGG | 0.514714 | 4.4:-9943328 | None:intergenic |
| CAAACTGGATTTGGCCGCAC+AGG | 0.519629 | 4.4:+9944778 | MS.gene28125:CDS |
| ATTGCAGATGAAGTGCAAAC+TGG | 0.520939 | 4.4:+9944763 | MS.gene28125:CDS |
| GATGGTTTGAGTGGCGGTGG+CGG | 0.526991 | 4.4:-9943229 | None:intergenic |
| AAGTTTACTCTGCTCAAAGA+TGG | 0.529014 | 4.4:-9943597 | None:intergenic |
| AGCATGGTGTAGATAAATAG+TGG | 0.534502 | 4.4:-9943633 | None:intergenic |
| GTCCATTATACGGATGAGGC+TGG | 0.536767 | 4.4:-9943284 | None:intergenic |
| CTTGAGCACTGCAAGTCCCC+CGG | 0.539059 | 4.4:-9945277 | None:intergenic |
| GAGGGGAAGAGGACTAATGC+TGG | 0.543953 | 4.4:+9945653 | MS.gene28125:CDS |
| TGATAGAAATGGAACAAGGA+AGG | 0.544076 | 4.4:-9943351 | None:intergenic |
| CAATATCTGTATGATGAAGC+TGG | 0.544301 | 4.4:+9943500 | MS.gene28125:CDS |
| TGGAGGAGGAGGAAGAGGAT+CGG | 0.544581 | 4.4:-9943206 | None:intergenic |
| AAGATTTCCAGGCATCTTGG+CGG | 0.548588 | 4.4:-9943681 | None:intergenic |
| ACGCTTGGCGAATACTTCAT+CGG | 0.548870 | 4.4:-9943313 | None:intergenic |
| GTTGTAACTACAGCTCCTAA+TGG | 0.549950 | 4.4:-9945183 | None:intergenic |
| GTGATCTCAAACGCTCAAGC+AGG | 0.554165 | 4.4:-9945350 | None:intergenic |
| GCTGGGAAAGGAGGACTGCA+TGG | 0.556047 | 4.4:+9945865 | MS.gene28125:CDS |
| TCTGGATAACGAGAAGCGGC+AGG | 0.556953 | 4.4:+9945302 | MS.gene28125:CDS |
| AGGGGAAGAGGACTAATGCT+GGG | 0.557249 | 4.4:+9945654 | MS.gene28125:CDS |
| TCTTTACTGAAACACATTGG+TGG | 0.561144 | 4.4:-9945907 | None:intergenic |
| GTGTAGTTGAATATTGTGGA+GGG | 0.563413 | 4.4:+9943470 | MS.gene28125:intron |
| CAATCCCAGCAAAAGCATCA+AGG | 0.564493 | 4.4:-9943532 | None:intergenic |
| GGAGCAGTTGAACTCGTACC+TGG | 0.565302 | 4.4:+9944691 | MS.gene28125:CDS |
| CACCAAAGACTCCACGGTAT+GGG | 0.569702 | 4.4:-9944469 | None:intergenic |
| GGCATTCTAGCTGGGAAAGG+AGG | 0.570151 | 4.4:+9945856 | MS.gene28125:CDS |
| TCCAGAAATTGCAAGTGTGA+TGG | 0.570685 | 4.4:+9945206 | MS.gene28125:CDS |
| TATGACATTGTACACAAGGC+TGG | 0.572210 | 4.4:+9944730 | MS.gene28125:CDS |
| GATGGTCCATTATACGGATG+AGG | 0.572300 | 4.4:-9943288 | None:intergenic |
| GAACCCCGTATGTTCTGCCG+GGG | 0.574287 | 4.4:+9945260 | MS.gene28125:CDS |
| TCCAAGACCATATTGACTAT+GGG | 0.574460 | 4.4:+9944519 | MS.gene28125:CDS |
| TGATCGAACGGCGGAATCTG+CGG | 0.579441 | 4.4:-9943261 | None:intergenic |
| AATCTGCGGCGGAGTAGTGA+TGG | 0.579469 | 4.4:-9943247 | None:intergenic |
| GAGGATCGGAGAGAAGAGAA+AGG | 0.584582 | 4.4:-9943192 | None:intergenic |
| TATTCCTGATATAGTTACAA+TGG | 0.585000 | 4.4:+9944834 | MS.gene28125:CDS |
| GCGAATACTTCATCGGCGGA+TGG | 0.586284 | 4.4:-9943306 | None:intergenic |
| GTCTCACCGCTCTTAACACA+TGG | 0.586462 | 4.4:+9943970 | MS.gene28125:CDS |
| AGTGATGGTTTGAGTGGCGG+TGG | 0.587951 | 4.4:-9943232 | None:intergenic |
| ATTCATAGCTGAAACAATCC+AGG | 0.588039 | 4.4:+9944562 | MS.gene28125:CDS |
| CCCAATAATGGCTTCCTGTG+CGG | 0.588913 | 4.4:-9944792 | None:intergenic |
| TCTCAGTCATTGGTGATGTG+AGG | 0.591066 | 4.4:+9945634 | MS.gene28125:intron |
| CTTGGCATTCTAGCTGGGAA+AGG | 0.591195 | 4.4:+9945853 | MS.gene28125:CDS |
| TGTGTAGTTGAATATTGTGG+AGG | 0.595941 | 4.4:+9943469 | MS.gene28125:intron |
| AAATGAATTGGCAATGCTGA+TGG | 0.597471 | 4.4:+9943872 | MS.gene28125:CDS |
| TGATATAGTTACAATGGCAA+AGG | 0.606729 | 4.4:+9944840 | MS.gene28125:CDS |
| TGTAGTTGAATATTGTGGAG+GGG | 0.612466 | 4.4:+9943471 | MS.gene28125:intron |
| TCAGTCATTGGTGATGTGAG+GGG | 0.613915 | 4.4:+9945636 | MS.gene28125:intron |
| CTGATGGCAAGATTGTATAC+CGG | 0.616966 | 4.4:+9943888 | MS.gene28125:CDS |
| CGGCGAAATCAGCAATAGCA+TGG | 0.617141 | 4.4:-9943649 | None:intergenic |
| CGGAGTAGTGATGGTTTGAG+TGG | 0.619784 | 4.4:-9943238 | None:intergenic |
| GGATGAGGCTGGTGATCGAA+CGG | 0.624953 | 4.4:-9943273 | None:intergenic |
| TTATTGGGGATTCGAGACAC+AGG | 0.628247 | 4.4:+9944807 | MS.gene28125:CDS |
| CGCACAGGAAGCCATTATTG+GGG | 0.631540 | 4.4:+9944793 | MS.gene28125:CDS |
| AGATGGCATTCAAAATATCA+GGG | 0.633200 | 4.4:-9943580 | None:intergenic |
| TGCTATTGCTGATTTCGCCG+AGG | 0.635228 | 4.4:+9943652 | MS.gene28125:CDS |
| TCATCTTTACTGAAACACAT+TGG | 0.635753 | 4.4:-9945910 | None:intergenic |
| ATGGAAATACCCACTTCCTG+AGG | 0.639038 | 4.4:+9943989 | MS.gene28125:CDS |
| AGAAACAAACCTCAGGAAGT+GGG | 0.641740 | 4.4:-9943998 | None:intergenic |
| AGGTTCTGGATAACGAGAAG+CGG | 0.647863 | 4.4:+9945298 | MS.gene28125:CDS |
| AGTAGTGATGGTTTGAGTGG+CGG | 0.650744 | 4.4:-9943235 | None:intergenic |
| AACCCCGTATGTTCTGCCGG+GGG | 0.654362 | 4.4:+9945261 | MS.gene28125:CDS |
| GGGGAAGAGGACTAATGCTG+GGG | 0.657842 | 4.4:+9945655 | MS.gene28125:CDS |
| CTTTGTCATAGAATAGTCCA+AGG | 0.661429 | 4.4:-9946060 | None:intergenic |
| CATCTGCACCAAAGACTCCA+CGG | 0.662027 | 4.4:-9944475 | None:intergenic |
| AGTATATGACATTGTACACA+AGG | 0.665712 | 4.4:+9944726 | MS.gene28125:CDS |
| TGCATGCAAGTAAATCGGAA+CGG | 0.667279 | 4.4:-9943167 | None:intergenic |
| TCGAACGGCGGAATCTGCGG+CGG | 0.669945 | 4.4:-9943258 | None:intergenic |
| TGTTTCAGTAAAGATGACGC+AGG | 0.689295 | 4.4:+9945916 | MS.gene28125:CDS |
| TTGAGGAATGCATATCATGG+AGG | 0.692717 | 4.4:+9943930 | MS.gene28125:CDS |
| GTATTTCCATGTGTTAAGAG+CGG | 0.693451 | 4.4:-9943976 | None:intergenic |
| TATTGGGGATTCGAGACACA+GGG | 0.695331 | 4.4:+9944808 | MS.gene28125:CDS |
| TGAGGCTGGTGATCGAACGG+CGG | 0.706578 | 4.4:-9943270 | None:intergenic |
| CTTGGCGAATACTTCATCGG+CGG | 0.715870 | 4.4:-9943310 | None:intergenic |
| AATGGAACAAGGAAGGACCA+AGG | 0.718500 | 4.4:-9943344 | None:intergenic |
| ATGAATCCAGACCCATACCG+TGG | 0.720666 | 4.4:+9944458 | MS.gene28125:CDS |
| GGGAAGAGGACTAATGCTGG+GGG | 0.726558 | 4.4:+9945656 | MS.gene28125:CDS |
| GACATTGTACACAAGGCTGG+TGG | 0.745825 | 4.4:+9944733 | MS.gene28125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTTATACTTCTTATT+TGG | - | chr4.4:9945812-9945831 | None:intergenic | 15.0% |
| !! | GAAAAAGTAAATAAAAAAGT+AGG | - | chr4.4:9944645-9944664 | None:intergenic | 15.0% |
| !! | GAGAATAATAATAAAAATTG+CGG | - | chr4.4:9945597-9945616 | None:intergenic | 15.0% |
| !! | AAGATTCAATTCAATACATT+TGG | + | chr4.4:9945234-9945253 | MS.gene28125:CDS | 20.0% |
| !! | TATAACTATTTACCTTCATA+TGG | + | chr4.4:9945821-9945840 | MS.gene28125:intron | 20.0% |
| !! | TTAATATAGCATCTTAGAAA+TGG | + | chr4.4:9945403-9945422 | MS.gene28125:intron | 20.0% |
| !! | TTATATAATTTCTCAGTCAT+TGG | + | chr4.4:9945624-9945643 | MS.gene28125:intron | 20.0% |
| !!! | TATACTTGTTTTAAATAACC+AGG | - | chr4.4:9944712-9944731 | None:intergenic | 20.0% |
| !!! | TTAAAAGCACACTTTAAATT+TGG | - | chr4.4:9944232-9944251 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTTTTCACCA+TGG | + | chr4.4:9944649-9944668 | MS.gene28125:intron | 20.0% |
| !!! | TTTTGTAATACAGTTCTTTA+TGG | + | chr4.4:9945430-9945449 | MS.gene28125:intron | 20.0% |
| ! | AAAGGCTTCAATATAAAATC+TGG | - | chr4.4:9945979-9945998 | None:intergenic | 25.0% |
| ! | AACATTAACATGAGATACAA+TGG | - | chr4.4:9945133-9945152 | None:intergenic | 25.0% |
| ! | ATGTATTGAATTGAATCTTC+TGG | - | chr4.4:9945233-9945252 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATACATTTGG+TGG | + | chr4.4:9945237-9945256 | MS.gene28125:CDS | 25.0% |
| ! | CACATTTAGGAAAAATAACA+TGG | - | chr4.4:9944124-9944143 | None:intergenic | 25.0% |
| ! | GTATACTGTACAAATGTATT+CGG | + | chr4.4:9944094-9944113 | MS.gene28125:intron | 25.0% |
| ! | GTTAATGTTGTTCTGTAATA+GGG | + | chr4.4:9945144-9945163 | MS.gene28125:intron | 25.0% |
| ! | TATTCCTGATATAGTTACAA+TGG | + | chr4.4:9944834-9944853 | MS.gene28125:CDS | 25.0% |
| ! | TCTATCCTGTTCAATATTTA+AGG | + | chr4.4:9944604-9944623 | MS.gene28125:intron | 25.0% |
| ! | TGTATTGAATTGAATCTTCT+GGG | - | chr4.4:9945232-9945251 | None:intergenic | 25.0% |
| ! | TGTTAATGTTGTTCTGTAAT+AGG | + | chr4.4:9945143-9945162 | MS.gene28125:intron | 25.0% |
| ! | TTCAATTCAATACATTTGGT+GGG | + | chr4.4:9945238-9945257 | MS.gene28125:CDS | 25.0% |
| ! | TTTAGGAAAAATAACATGGT+TGG | - | chr4.4:9944120-9944139 | None:intergenic | 25.0% |
| !! | AGATAAATGAGTTTGATGAT+AGG | - | chr4.4:9943391-9943410 | None:intergenic | 25.0% |
| !! | ATTTAAGGTGGTAATTAGAT+TGG | + | chr4.4:9944619-9944638 | MS.gene28125:intron | 25.0% |
| !! | GTTGTGTATTTTGTAAATTC+TGG | + | chr4.4:9943840-9943859 | MS.gene28125:CDS | 25.0% |
| !! | TAAAACTTTTGCTGGATTAA+AGG | - | chr4.4:9945997-9946016 | None:intergenic | 25.0% |
| !! | TTTTTGATAGAAATGGAACA+AGG | - | chr4.4:9943358-9943377 | None:intergenic | 25.0% |
| !!! | AACAATTTTTGTTATGATGC+AGG | - | chr4.4:9945564-9945583 | None:intergenic | 25.0% |
| !!! | AATTTATGGTTTGTTAGTTG+CGG | - | chr4.4:9944392-9944411 | None:intergenic | 25.0% |
| !!! | CATGTTATTTTTCCTAAATG+TGG | + | chr4.4:9944122-9944141 | MS.gene28125:intron | 25.0% |
| AAGATGGCATTCAAAATATC+AGG | - | chr4.4:9943584-9943603 | None:intergenic | 30.0% | |
| AAGTTCTACAATCCATATGA+AGG | - | chr4.4:9945836-9945855 | None:intergenic | 30.0% | |
| ACACATCGAGCTAAAATTTA+AGG | - | chr4.4:9945004-9945023 | None:intergenic | 30.0% | |
| AGAAATCATACCAAGATTAC+CGG | - | chr4.4:9943910-9943929 | None:intergenic | 30.0% | |
| AGATGGCATTCAAAATATCA+GGG | - | chr4.4:9943583-9943602 | None:intergenic | 30.0% | |
| AGTATATGACATTGTACACA+AGG | + | chr4.4:9944726-9944745 | MS.gene28125:CDS | 30.0% | |
| ATCCTGTTCAATATTTAAGG+TGG | + | chr4.4:9944607-9944626 | MS.gene28125:intron | 30.0% | |
| ATCTATGTACATGGATTCTT+AGG | + | chr4.4:9945473-9945492 | MS.gene28125:intron | 30.0% | |
| ATCTTGGTATGATTTCTTTG+AGG | + | chr4.4:9943913-9943932 | MS.gene28125:CDS | 30.0% | |
| CTGTAATTTATAACGCCTAT+TGG | - | chr4.4:9944075-9944094 | None:intergenic | 30.0% | |
| GATCATGATATGTTATAGTC+AGG | + | chr4.4:9945533-9945552 | MS.gene28125:intron | 30.0% | |
| GCGTTGTCAAGAATAATTTA+TGG | - | chr4.4:9944406-9944425 | None:intergenic | 30.0% | |
| GTTTGTGTAGTTGAATATTG+TGG | + | chr4.4:9943466-9943485 | MS.gene28125:intron | 30.0% | |
| TACCACCTTAAATATTGAAC+AGG | - | chr4.4:9944612-9944631 | None:intergenic | 30.0% | |
| TATACTACATAGTACATACC+TGG | - | chr4.4:9944583-9944602 | None:intergenic | 30.0% | |
| TCATCTTTACTGAAACACAT+TGG | - | chr4.4:9945913-9945932 | None:intergenic | 30.0% | |
| TCTCTTGTGTTATAGTATGA+TGG | + | chr4.4:9943736-9943755 | MS.gene28125:intron | 30.0% | |
| TGATATAGTTACAATGGCAA+AGG | + | chr4.4:9944840-9944859 | MS.gene28125:CDS | 30.0% | |
| TGCTTAATAAACCTCATTAG+AGG | - | chr4.4:9944945-9944964 | None:intergenic | 30.0% | |
| TTTGCCATTGTAACTATATC+AGG | - | chr4.4:9944841-9944860 | None:intergenic | 30.0% | |
| ! | ACTCAAAACTAGTTCTCATT+TGG | + | chr4.4:9944255-9944274 | MS.gene28125:intron | 30.0% |
| ! | ATGATCCTTTTGAATCCAAT+AGG | + | chr4.4:9944057-9944076 | MS.gene28125:intron | 30.0% |
| ! | ATTGTCAACTTTTGAATTGC+AGG | + | chr4.4:9943818-9943837 | MS.gene28125:intron | 30.0% |
| ! | CATTGGAATAAAACTTTTGC+TGG | - | chr4.4:9946005-9946024 | None:intergenic | 30.0% |
| ! | TTATTTAGTTCCTGAAACCT+TGG | + | chr4.4:9944887-9944906 | MS.gene28125:intron | 30.0% |
| ! | TTCATATGGATTGTAGAACT+TGG | + | chr4.4:9945835-9945854 | MS.gene28125:intron | 30.0% |
| !! | GTCTTGTTTGAAAAACTTAG+AGG | + | chr4.4:9945732-9945751 | MS.gene28125:CDS | 30.0% |
| !! | TGGTTTGTTAATGTGTTGTT+GGG | + | chr4.4:9943791-9943810 | MS.gene28125:intron | 30.0% |
| !! | TTGTTTTACTCATTTGAGGA+CGG | + | chr4.4:9944189-9944208 | MS.gene28125:intron | 30.0% |
| !! | TTTCTAGCTATCTATGTACA+TGG | + | chr4.4:9945464-9945483 | MS.gene28125:intron | 30.0% |
| !!! | ACAACGCATTGATTCTTTTA+GGG | + | chr4.4:9944419-9944438 | MS.gene28125:intron | 30.0% |
| !!! | CAACTTGTTTTACTCATTTG+AGG | + | chr4.4:9944185-9944204 | MS.gene28125:intron | 30.0% |
| !!! | GTTATTTTTCCTAAATGTGG+TGG | + | chr4.4:9944125-9944144 | MS.gene28125:intron | 30.0% |
| AAATCTGCAAGCAAAGAGAA+TGG | - | chr4.4:9946029-9946048 | None:intergenic | 35.0% | |
| AAATGAATTGGCAATGCTGA+TGG | + | chr4.4:9943872-9943891 | MS.gene28125:CDS | 35.0% | |
| AAGTTTACTCTGCTCAAAGA+TGG | - | chr4.4:9943600-9943619 | None:intergenic | 35.0% | |
| ACAACACATTAACAAACCAG+AGG | - | chr4.4:9943790-9943809 | None:intergenic | 35.0% | |
| ACATATCATGATCAGTTACC+AGG | - | chr4.4:9945526-9945545 | None:intergenic | 35.0% | |
| AGATTGTATACCGGTAATCT+TGG | + | chr4.4:9943897-9943916 | MS.gene28125:CDS | 35.0% | |
| AGCATGGTGTAGATAAATAG+TGG | - | chr4.4:9943636-9943655 | None:intergenic | 35.0% | |
| ATTCATAGCTGAAACAATCC+AGG | + | chr4.4:9944562-9944581 | MS.gene28125:CDS | 35.0% | |
| CAATATCTGTATGATGAAGC+TGG | + | chr4.4:9943500-9943519 | MS.gene28125:CDS | 35.0% | |
| CTTTGTCATAGAATAGTCCA+AGG | - | chr4.4:9946063-9946082 | None:intergenic | 35.0% | |
| GACATCTTTAGCATAGCTAT+TGG | - | chr4.4:9944501-9944520 | None:intergenic | 35.0% | |
| GATTCAAAAGGATCATATGC+AGG | - | chr4.4:9944053-9944072 | None:intergenic | 35.0% | |
| GCACTTCAAATGCTTAACTA+AGG | - | chr4.4:9944915-9944934 | None:intergenic | 35.0% | |
| GGCACTTATATTAGAAAGAG+CGG | - | chr4.4:9945791-9945810 | None:intergenic | 35.0% | |
| GTATTTCCATGTGTTAAGAG+CGG | - | chr4.4:9943979-9943998 | None:intergenic | 35.0% | |
| GTGTAGTTGAATATTGTGGA+GGG | + | chr4.4:9943470-9943489 | MS.gene28125:intron | 35.0% | |
| GTTGTTCTGTAATAGGGTAT+TGG | + | chr4.4:9945150-9945169 | MS.gene28125:intron | 35.0% | |
| TAACGCCTATTGGATTCAAA+AGG | - | chr4.4:9944065-9944084 | None:intergenic | 35.0% | |
| TATCTATGATCAACCCACAA+AGG | - | chr4.4:9944304-9944323 | None:intergenic | 35.0% | |
| TCTTTACTGAAACACATTGG+TGG | - | chr4.4:9945910-9945929 | None:intergenic | 35.0% | |
| TGATAGAAATGGAACAAGGA+AGG | - | chr4.4:9943354-9943373 | None:intergenic | 35.0% | |
| TGTAGTTGAATATTGTGGAG+GGG | + | chr4.4:9943471-9943490 | MS.gene28125:intron | 35.0% | |
| TGTGTAGTTGAATATTGTGG+AGG | + | chr4.4:9943469-9943488 | MS.gene28125:intron | 35.0% | |
| TTTCACCATGGCTTATTCTA+GGG | + | chr4.4:9944661-9944680 | MS.gene28125:intron | 35.0% | |
| ! | AGTTTGATGATAGGAACTGA+CGG | - | chr4.4:9943382-9943401 | None:intergenic | 35.0% |
| ! | TCCAAGACCATATTGACTAT+GGG | + | chr4.4:9944519-9944538 | MS.gene28125:CDS | 35.0% |
| ! | TCTTTGAGGAATGCATATCA+TGG | + | chr4.4:9943927-9943946 | MS.gene28125:CDS | 35.0% |
| ! | TTTAAGATTTCCAGGCATCT+TGG | - | chr4.4:9943687-9943706 | None:intergenic | 35.0% |
| ! | TTTGCTTGCAGATTTTCTTG+TGG | + | chr4.4:9946034-9946053 | MS.gene28125:intron | 35.0% |
| ! | TTTTCACCATGGCTTATTCT+AGG | + | chr4.4:9944660-9944679 | MS.gene28125:intron | 35.0% |
| !! | CTGGTTTGTTAATGTGTTGT+TGG | + | chr4.4:9943790-9943809 | MS.gene28125:intron | 35.0% |
| !! | GTGGGTTGATCATAGATATT+AGG | + | chr4.4:9944306-9944325 | MS.gene28125:intron | 35.0% |
| !! | TACATGGATTCTTAGGTTGA+GGG | + | chr4.4:9945480-9945499 | MS.gene28125:intron | 35.0% |
| !! | TGACTCACTTTAAGATTTCC+AGG | - | chr4.4:9943695-9943714 | None:intergenic | 35.0% |
| !! | TGGTTCTGAAGCAAATGAAT+TGG | + | chr4.4:9943860-9943879 | MS.gene28125:CDS | 35.0% |
| !!! | GACAACGCATTGATTCTTTT+AGG | + | chr4.4:9944418-9944437 | MS.gene28125:intron | 35.0% |
| !!! | GATTTTTTATGACCAGCGTT+TGG | + | chr4.4:9944277-9944296 | MS.gene28125:intron | 35.0% |
| !!! | TGACGGGTTTTTGATAGAAA+TGG | - | chr4.4:9943365-9943384 | None:intergenic | 35.0% |
| AAGAAACAAACCTCAGGAAG+TGG | - | chr4.4:9944002-9944021 | None:intergenic | 40.0% | |
| AGAAACAAACCTCAGGAAGT+GGG | - | chr4.4:9944001-9944020 | None:intergenic | 40.0% | |
| AGCATGAAGAAACAAACCTC+AGG | - | chr4.4:9944008-9944027 | None:intergenic | 40.0% | |
| AGGTCTGCATGCAAGTAAAT+CGG | - | chr4.4:9943175-9943194 | None:intergenic | 40.0% | |
| ATATGATTGCATGATGCCTC+TGG | + | chr4.4:9943771-9943790 | MS.gene28125:intron | 40.0% | |
| ATTGCAGATGAAGTGCAAAC+TGG | + | chr4.4:9944763-9944782 | MS.gene28125:CDS | 40.0% | |
| CAAGCAAAGAGAATGGTCAT+TGG | - | chr4.4:9946022-9946041 | None:intergenic | 40.0% | |
| CAGGCTCAAATCAAGTAATG+AGG | - | chr4.4:9945507-9945526 | None:intergenic | 40.0% | |
| CTGAAGTCCCATAGTCAATA+TGG | - | chr4.4:9944529-9944548 | None:intergenic | 40.0% | |
| CTGATGGCAAGATTGTATAC+CGG | + | chr4.4:9943888-9943907 | MS.gene28125:CDS | 40.0% | |
| GAAAAACAAGACACCTGCAA+AGG | + | chr4.4:9945698-9945717 | MS.gene28125:CDS | 40.0% | |
| GAGGACGGAATTCAAGATTT+AGG | + | chr4.4:9944204-9944223 | MS.gene28125:intron | 40.0% | |
| GATGAAGTGCAAACTGGATT+TGG | + | chr4.4:9944769-9944788 | MS.gene28125:CDS | 40.0% | |
| GTTGTAACTACAGCTCCTAA+TGG | - | chr4.4:9945186-9945205 | None:intergenic | 40.0% | |
| TAAATCGGAACGGTTAGGTT+TGG | - | chr4.4:9943160-9943179 | None:intergenic | 40.0% | |
| TATGACATTGTACACAAGGC+TGG | + | chr4.4:9944730-9944749 | MS.gene28125:CDS | 40.0% | |
| TCCAGAAATTGCAAGTGTGA+TGG | + | chr4.4:9945206-9945225 | MS.gene28125:CDS | 40.0% | |
| TCCCATAGTCAATATGGTCT+TGG | - | chr4.4:9944523-9944542 | None:intergenic | 40.0% | |
| TGCATGCAAGTAAATCGGAA+CGG | - | chr4.4:9943170-9943189 | None:intergenic | 40.0% | |
| TGTTTCAGTAAAGATGACGC+AGG | + | chr4.4:9945916-9945935 | MS.gene28125:CDS | 40.0% | |
| TTCACCATGGCTTATTCTAG+GGG | + | chr4.4:9944662-9944681 | MS.gene28125:intron | 40.0% | |
| TTGAGGAATGCATATCATGG+AGG | + | chr4.4:9943930-9943949 | MS.gene28125:CDS | 40.0% | |
| TTTCCTAAATGTGGTGGTTG+CGG | + | chr4.4:9944131-9944150 | MS.gene28125:intron | 40.0% | |
| ! | AATGCTTAACTAAGGTGCCA+AGG | - | chr4.4:9944907-9944926 | None:intergenic | 40.0% |
| ! | AGATTTTCTTGTGGATGCCT+TGG | + | chr4.4:9946043-9946062 | MS.gene28125:intron | 40.0% |
| ! | ATTGGCAATGGTTTGCCATT+AGG | + | chr4.4:9945168-9945187 | MS.gene28125:CDS | 40.0% |
| ! | CATATTGACTATGGGACTTC+AGG | + | chr4.4:9944527-9944546 | MS.gene28125:CDS | 40.0% |
| ! | CTCATTACTTGATTTGAGCC+TGG | + | chr4.4:9945505-9945524 | MS.gene28125:intron | 40.0% |
| ! | GACTGCATGGAAATGTTTTC+AGG | + | chr4.4:9945878-9945897 | MS.gene28125:CDS | 40.0% |
| ! | GGAGGAAGTTCTAGTACAAT+GGG | + | chr4.4:9943948-9943967 | MS.gene28125:CDS | 40.0% |
| ! | GTACATGGATTCTTAGGTTG+AGG | + | chr4.4:9945479-9945498 | MS.gene28125:intron | 40.0% |
| ! | GTCCAAGACCATATTGACTA+TGG | + | chr4.4:9944518-9944537 | MS.gene28125:CDS | 40.0% |
| ! | GTTACCTTGATGCTTTTGCT+GGG | + | chr4.4:9943528-9943547 | MS.gene28125:CDS | 40.0% |
| ! | GTTTGATGATAGGAACTGAC+GGG | - | chr4.4:9943381-9943400 | None:intergenic | 40.0% |
| ! | TAGAACTTGGCATTCTAGCT+GGG | + | chr4.4:9945848-9945867 | MS.gene28125:intron | 40.0% |
| ! | TGGAGGAAGTTCTAGTACAA+TGG | + | chr4.4:9943947-9943966 | MS.gene28125:CDS | 40.0% |
| !! | CTGTAATAGGGTATTGGCAA+TGG | + | chr4.4:9945156-9945175 | MS.gene28125:intron | 40.0% |
| !!! | AGGTGTCTTGTTTTTCTGGT+CGG | - | chr4.4:9945694-9945713 | None:intergenic | 40.0% |
| !!! | TTGCAGGTGTCTTGTTTTTC+TGG | - | chr4.4:9945698-9945717 | None:intergenic | 40.0% |
| AAGATTTCCAGGCATCTTGG+CGG | - | chr4.4:9943684-9943703 | None:intergenic | 45.0% | |
| AATGGAACAAGGAAGGACCA+AGG | - | chr4.4:9943347-9943366 | None:intergenic | 45.0% | |
| ACCAAGGAACTGTTTACGCT+TGG | - | chr4.4:9943331-9943350 | None:intergenic | 45.0% | |
| ACGCTTGGCGAATACTTCAT+CGG | - | chr4.4:9943316-9943335 | None:intergenic | 45.0% | |
| AGTAGTGATGGTTTGAGTGG+CGG | - | chr4.4:9943238-9943257 | None:intergenic | 45.0% | |
| ATGGAAATACCCACTTCCTG+AGG | + | chr4.4:9943989-9944008 | MS.gene28125:CDS | 45.0% | |
| GATGGTCCATTATACGGATG+AGG | - | chr4.4:9943291-9943310 | None:intergenic | 45.0% | |
| GCAAGTAAATCGGAACGGTT+AGG | - | chr4.4:9943165-9943184 | None:intergenic | 45.0% | |
| GCCATCACACTTGCAATTTC+TGG | - | chr4.4:9945210-9945229 | None:intergenic | 45.0% | |
| GTAGAACTTGGCATTCTAGC+TGG | + | chr4.4:9945847-9945866 | MS.gene28125:intron | 45.0% | |
| GTGTCTCGAATCCCCAATAA+TGG | - | chr4.4:9944807-9944826 | None:intergenic | 45.0% | |
| TATTGGGGATTCGAGACACA+GGG | + | chr4.4:9944808-9944827 | MS.gene28125:CDS | 45.0% | |
| TCACCATGGCTTATTCTAGG+GGG | + | chr4.4:9944663-9944682 | MS.gene28125:intron | 45.0% | |
| TCAGTAAAGATGACGCAGGT+AGG | + | chr4.4:9945920-9945939 | MS.gene28125:intron | 45.0% | |
| TTATTGGGGATTCGAGACAC+AGG | + | chr4.4:9944807-9944826 | MS.gene28125:CDS | 45.0% | |
| ! | AACTAAGGTGCCAAGGTTTC+AGG | - | chr4.4:9944900-9944919 | None:intergenic | 45.0% |
| ! | CGTTACCTTGATGCTTTTGC+TGG | + | chr4.4:9943527-9943546 | MS.gene28125:CDS | 45.0% |
| !! | AGGTTCTGGATAACGAGAAG+CGG | + | chr4.4:9945298-9945317 | MS.gene28125:CDS | 45.0% |
| !! | CAATCCCAGCAAAAGCATCA+AGG | - | chr4.4:9943535-9943554 | None:intergenic | 45.0% |
| !! | CTCAGTCATTGGTGATGTGA+GGG | + | chr4.4:9945635-9945654 | MS.gene28125:intron | 45.0% |
| !! | GGGATTGTTACTGTTTCTGC+TGG | + | chr4.4:9943548-9943567 | MS.gene28125:CDS | 45.0% |
| !! | TCAGTCATTGGTGATGTGAG+GGG | + | chr4.4:9945636-9945655 | MS.gene28125:intron | 45.0% |
| !! | TCTCAGTCATTGGTGATGTG+AGG | + | chr4.4:9945634-9945653 | MS.gene28125:intron | 45.0% |
| ACAGCAGTTTCAGCCTTTGC+AGG | - | chr4.4:9945714-9945733 | None:intergenic | 50.0% | |
| ACCAGCGTTTGGACCTTTGT+GGG | + | chr4.4:9944288-9944307 | MS.gene28125:intron | 50.0% | |
| ACTTGCAGTGCTCAAGGTTC+TGG | + | chr4.4:9945284-9945303 | MS.gene28125:CDS | 50.0% | |
| AGGGGAAGAGGACTAATGCT+GGG | + | chr4.4:9945654-9945673 | MS.gene28125:CDS | 50.0% | |
| AGTCCGCAACCACCACATTT+AGG | - | chr4.4:9944137-9944156 | None:intergenic | 50.0% | |
| ATGAATCCAGACCCATACCG+TGG | + | chr4.4:9944458-9944477 | MS.gene28125:CDS | 50.0% | |
| CAACCCCCTAGAATAAGCCA+TGG | - | chr4.4:9944669-9944688 | None:intergenic | 50.0% | |
| CACCAAAGACTCCACGGTAT+GGG | - | chr4.4:9944472-9944491 | None:intergenic | 50.0% | |
| CACCAGCCTCATCCGTATAA+TGG | + | chr4.4:9943282-9943301 | MS.gene28125:CDS | 50.0% | |
| CATCTGCACCAAAGACTCCA+CGG | - | chr4.4:9944478-9944497 | None:intergenic | 50.0% | |
| CCCAATAATGGCTTCCTGTG+CGG | - | chr4.4:9944795-9944814 | None:intergenic | 50.0% | |
| CCGCACAGGAAGCCATTATT+GGG | + | chr4.4:9944792-9944811 | MS.gene28125:CDS | 50.0% | |
| CGCACAGGAAGCCATTATTG+GGG | + | chr4.4:9944793-9944812 | MS.gene28125:CDS | 50.0% | |
| CGGAGTAGTGATGGTTTGAG+TGG | - | chr4.4:9943241-9943260 | None:intergenic | 50.0% | |
| CGGCGAAATCAGCAATAGCA+TGG | - | chr4.4:9943652-9943671 | None:intergenic | 50.0% | |
| CTTGGCGAATACTTCATCGG+CGG | - | chr4.4:9943313-9943332 | None:intergenic | 50.0% | |
| GACATTGTACACAAGGCTGG+TGG | + | chr4.4:9944733-9944752 | MS.gene28125:CDS | 50.0% | |
| GAGGATCGGAGAGAAGAGAA+AGG | - | chr4.4:9943195-9943214 | None:intergenic | 50.0% | |
| GCCAAGCGTAAACAGTTCCT+TGG | + | chr4.4:9943327-9943346 | MS.gene28125:CDS | 50.0% | |
| GGGACTTCAGGAAAAGTTGC+TGG | + | chr4.4:9944539-9944558 | MS.gene28125:CDS | 50.0% | |
| GTCCATTATACGGATGAGGC+TGG | - | chr4.4:9943287-9943306 | None:intergenic | 50.0% | |
| GTCTCACCGCTCTTAACACA+TGG | + | chr4.4:9943970-9943989 | MS.gene28125:CDS | 50.0% | |
| GTGATCTCAAACGCTCAAGC+AGG | - | chr4.4:9945353-9945372 | None:intergenic | 50.0% | |
| GTGCAGCATTGCCTCTAATG+AGG | + | chr4.4:9944931-9944950 | MS.gene28125:intron | 50.0% | |
| TCGGCGGATGGTCCATTATA+CGG | - | chr4.4:9943297-9943316 | None:intergenic | 50.0% | |
| ! | CATGGCTTATTCTAGGGGGT+TGG | + | chr4.4:9944667-9944686 | MS.gene28125:intron | 50.0% |
| ! | CTTGGCATTCTAGCTGGGAA+AGG | + | chr4.4:9945853-9945872 | MS.gene28125:CDS | 50.0% |
| !! | ATTGGTGATGTGAGGGGAAG+AGG | + | chr4.4:9945642-9945661 | MS.gene28125:CDS | 50.0% |
| !! | TGCTATTGCTGATTTCGCCG+AGG | + | chr4.4:9943652-9943671 | MS.gene28125:CDS | 50.0% |
| AAGACTCCACGGTATGGGTC+TGG | - | chr4.4:9944467-9944486 | None:intergenic | 55.0% | |
| AAGTCCCCCGGCAGAACATA+CGG | - | chr4.4:9945268-9945287 | None:intergenic | 55.0% | |
| AATCTGCGGCGGAGTAGTGA+TGG | - | chr4.4:9943250-9943269 | None:intergenic | 55.0% | |
| ACCCACAAAGGTCCAAACGC+TGG | - | chr4.4:9944292-9944311 | None:intergenic | 55.0% | |
| AGTGATGGTTTGAGTGGCGG+TGG | - | chr4.4:9943235-9943254 | None:intergenic | 55.0% | |
| CAAACTGGATTTGGCCGCAC+AGG | + | chr4.4:9944778-9944797 | MS.gene28125:CDS | 55.0% | |
| GACCAGCGTTTGGACCTTTG+TGG | + | chr4.4:9944287-9944306 | MS.gene28125:intron | 55.0% | |
| GACCCATACCGTGGAGTCTT+TGG | + | chr4.4:9944467-9944486 | MS.gene28125:CDS | 55.0% | |
| GAGGGGAAGAGGACTAATGC+TGG | + | chr4.4:9945653-9945672 | MS.gene28125:CDS | 55.0% | |
| GCACCAAAGACTCCACGGTA+TGG | - | chr4.4:9944473-9944492 | None:intergenic | 55.0% | |
| GCCGCACAGGAAGCCATTAT+TGG | + | chr4.4:9944791-9944810 | MS.gene28125:CDS | 55.0% | |
| GCGAATACTTCATCGGCGGA+TGG | - | chr4.4:9943309-9943328 | None:intergenic | 55.0% | |
| GGAGCAGTTGAACTCGTACC+TGG | + | chr4.4:9944691-9944710 | MS.gene28125:CDS | 55.0% | |
| GGATGAGGCTGGTGATCGAA+CGG | - | chr4.4:9943276-9943295 | None:intergenic | 55.0% | |
| GGGAAGAGGACTAATGCTGG+GGG | + | chr4.4:9945656-9945675 | MS.gene28125:CDS | 55.0% | |
| GGGGAAGAGGACTAATGCTG+GGG | + | chr4.4:9945655-9945674 | MS.gene28125:CDS | 55.0% | |
| TCTGGATAACGAGAAGCGGC+AGG | + | chr4.4:9945302-9945321 | MS.gene28125:CDS | 55.0% | |
| TGATCGAACGGCGGAATCTG+CGG | - | chr4.4:9943264-9943283 | None:intergenic | 55.0% | |
| TGGAGGAGGAGGAAGAGGAT+CGG | - | chr4.4:9943209-9943228 | None:intergenic | 55.0% | |
| ! | CAGGCTCATTGCGCTGATGT+TGG | + | chr4.4:9945321-9945340 | MS.gene28125:CDS | 55.0% |
| ! | GGCATTCTAGCTGGGAAAGG+AGG | + | chr4.4:9945856-9945875 | MS.gene28125:CDS | 55.0% |
| ! | GGCTTATTCTAGGGGGTTGG+AGG | + | chr4.4:9944670-9944689 | MS.gene28125:intron | 55.0% |
| !! | TGCTGATTTCGCCGAGGCTT+TGG | + | chr4.4:9943658-9943677 | MS.gene28125:CDS | 55.0% |
| AACCCCGTATGTTCTGCCGG+GGG | + | chr4.4:9945261-9945280 | MS.gene28125:CDS | 60.0% | |
| AGTCCCCCGGCAGAACATAC+GGG | - | chr4.4:9945267-9945286 | None:intergenic | 60.0% | |
| CATCTTGGCGGCCAAAGCCT+CGG | - | chr4.4:9943672-9943691 | None:intergenic | 60.0% | |
| GAACCCCGTATGTTCTGCCG+GGG | + | chr4.4:9945260-9945279 | MS.gene28125:CDS | 60.0% | |
| GATGGTTTGAGTGGCGGTGG+CGG | - | chr4.4:9943232-9943251 | None:intergenic | 60.0% | |
| GCTGGGAAAGGAGGACTGCA+TGG | + | chr4.4:9945865-9945884 | MS.gene28125:CDS | 60.0% | |
| GGAACCCCGTATGTTCTGCC+GGG | + | chr4.4:9945259-9945278 | MS.gene28125:CDS | 60.0% | |
| GGGAACCCCGTATGTTCTGC+CGG | + | chr4.4:9945258-9945277 | MS.gene28125:CDS | 60.0% | |
| TGAGGCTGGTGATCGAACGG+CGG | - | chr4.4:9943273-9943292 | None:intergenic | 60.0% | |
| ! | CTTGAGCACTGCAAGTCCCC+CGG | - | chr4.4:9945280-9945299 | None:intergenic | 60.0% |
| CGGGGGACTTGCAGTGCTCA+AGG | + | chr4.4:9945278-9945297 | MS.gene28125:CDS | 65.0% | |
| GCTTTGGCCGCCAAGATGCC+TGG | + | chr4.4:9943674-9943693 | MS.gene28125:CDS | 65.0% | |
| GTCCCCCGGCAGAACATACG+GGG | - | chr4.4:9945266-9945285 | None:intergenic | 65.0% | |
| TCGAACGGCGGAATCTGCGG+CGG | - | chr4.4:9943261-9943280 | None:intergenic | 65.0% | |
| GGCGGTGGAGGAGGAGGAAG+AGG | - | chr4.4:9943214-9943233 | None:intergenic | 70.0% | |
| ! | GGTTTGAGTGGCGGTGGCGG+TGG | - | chr4.4:9943229-9943248 | None:intergenic | 70.0% |
| ! | TTGAGTGGCGGTGGCGGTGG+AGG | - | chr4.4:9943226-9943245 | None:intergenic | 70.0% |
| ! | AGTGGCGGTGGCGGTGGAGG+AGG | - | chr4.4:9943223-9943242 | None:intergenic | 75.0% |
| !! | GGCGGTGGCGGTGGAGGAGG+AGG | - | chr4.4:9943220-9943239 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9943123 | 9946088 | 9943123 | ID=MS.gene28125 |
| chr4.4 | mRNA | 9943123 | 9946088 | 9943123 | ID=MS.gene28125.t1;Parent=MS.gene28125 |
| chr4.4 | exon | 9943123 | 9943380 | 9943123 | ID=MS.gene28125.t1.exon1;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9943123 | 9943380 | 9943123 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9943476 | 9943706 | 9943476 | ID=MS.gene28125.t1.exon2;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9943476 | 9943706 | 9943476 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9943840 | 9944010 | 9943840 | ID=MS.gene28125.t1.exon3;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9943840 | 9944010 | 9943840 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9944440 | 9944583 | 9944440 | ID=MS.gene28125.t1.exon4;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9944440 | 9944583 | 9944440 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9944682 | 9944861 | 9944682 | ID=MS.gene28125.t1.exon5;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9944682 | 9944861 | 9944682 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9945165 | 9945390 | 9945165 | ID=MS.gene28125.t1.exon6;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9945165 | 9945390 | 9945165 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9945640 | 9945753 | 9945640 | ID=MS.gene28125.t1.exon7;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9945640 | 9945753 | 9945640 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9945851 | 9945937 | 9945851 | ID=MS.gene28125.t1.exon8;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9945851 | 9945937 | 9945851 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| chr4.4 | exon | 9946045 | 9946088 | 9946045 | ID=MS.gene28125.t1.exon9;Parent=MS.gene28125.t1 |
| chr4.4 | CDS | 9946045 | 9946088 | 9946045 | ID=cds.MS.gene28125.t1;Parent=MS.gene28125.t1 |
| Gene Sequence |
| Protein sequence |
