Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030747.t1 | XP_003630095.1 | 97.9 | 469 | 7 | 2 | 1 | 468 | 1 | 467 | 7.80E-265 | 922.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030747.t1 | Q940M2 | 82.3 | 468 | 77 | 2 | 1 | 468 | 1 | 462 | 4.2e-227 | 788.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030747.t1 | B7FLF5 | 97.9 | 469 | 7 | 2 | 1 | 468 | 1 | 467 | 5.6e-265 | 922.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030747 | MS.gene023325 | PPI |
| MS.gene031835 | MS.gene030747 | PPI |
| MS.gene030747 | MS.gene08300 | PPI |
| MS.gene030747 | MS.gene28928 | PPI |
| MS.gene030747 | MS.gene043742 | PPI |
| MS.gene030747 | MS.gene003378 | PPI |
| MS.gene052375 | MS.gene030747 | PPI |
| MS.gene87756 | MS.gene030747 | PPI |
| MS.gene87050 | MS.gene030747 | PPI |
| MS.gene26019 | MS.gene030747 | PPI |
| MS.gene34910 | MS.gene030747 | PPI |
| MS.gene030747 | MS.gene42086 | PPI |
| MS.gene030747 | MS.gene050272 | PPI |
| MS.gene010912 | MS.gene030747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030747.t1 | MTR_8g091660 | 97.868 | 469 | 7 | 2 | 1 | 468 | 1 | 467 | 0.0 | 943 |
| MS.gene030747.t1 | MTR_7g072420 | 62.151 | 465 | 173 | 1 | 4 | 468 | 6 | 467 | 0.0 | 617 |
| MS.gene030747.t1 | MTR_3g465800 | 59.955 | 447 | 179 | 0 | 22 | 468 | 13 | 459 | 0.0 | 580 |
| MS.gene030747.t1 | MTR_3g465800 | 64.844 | 384 | 135 | 0 | 85 | 468 | 5 | 388 | 0.0 | 538 |
| MS.gene030747.t1 | MTR_7g451450 | 29.471 | 397 | 243 | 8 | 80 | 467 | 83 | 451 | 4.40e-44 | 161 |
| MS.gene030747.t1 | MTR_4g076100 | 27.470 | 415 | 261 | 14 | 84 | 467 | 81 | 486 | 1.41e-33 | 133 |
| MS.gene030747.t1 | MTR_4g076100 | 28.012 | 332 | 202 | 13 | 164 | 467 | 20 | 342 | 5.53e-27 | 112 |
| MS.gene030747.t1 | MTR_3g465840 | 61.972 | 71 | 27 | 0 | 97 | 167 | 76 | 146 | 2.56e-26 | 104 |
| MS.gene030747.t1 | MTR_7g031840 | 36.957 | 184 | 74 | 5 | 285 | 457 | 35 | 187 | 7.46e-22 | 94.4 |
| MS.gene030747.t1 | MTR_3g089960 | 34.184 | 196 | 59 | 5 | 292 | 457 | 20 | 175 | 2.82e-19 | 87.8 |
| MS.gene030747.t1 | MTR_3g118070 | 26.347 | 334 | 217 | 10 | 83 | 404 | 18 | 334 | 1.07e-18 | 88.6 |
| MS.gene030747.t1 | MTR_3g118070 | 26.347 | 334 | 217 | 10 | 83 | 404 | 75 | 391 | 1.39e-18 | 88.6 |
| MS.gene030747.t1 | MTR_4g045917 | 44.444 | 117 | 32 | 4 | 328 | 444 | 8 | 91 | 1.48e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030747.t1 | AT4G39660 | 82.265 | 468 | 77 | 2 | 1 | 468 | 1 | 462 | 0.0 | 804 |
| MS.gene030747.t1 | AT4G39660 | 87.760 | 384 | 47 | 0 | 85 | 468 | 4 | 387 | 0.0 | 714 |
| MS.gene030747.t1 | AT3G08860 | 60.722 | 471 | 177 | 2 | 1 | 469 | 4 | 468 | 0.0 | 616 |
| MS.gene030747.t1 | AT3G08860 | 60.638 | 470 | 177 | 2 | 1 | 468 | 4 | 467 | 0.0 | 614 |
| MS.gene030747.t1 | AT2G38400 | 60.215 | 465 | 183 | 2 | 4 | 468 | 1 | 463 | 0.0 | 596 |
| MS.gene030747.t1 | AT2G38400 | 60.215 | 465 | 183 | 2 | 4 | 468 | 1 | 463 | 0.0 | 596 |
| MS.gene030747.t1 | AT1G80600 | 30.479 | 397 | 239 | 9 | 80 | 467 | 73 | 441 | 1.86e-49 | 176 |
| MS.gene030747.t1 | AT5G46180 | 28.889 | 405 | 251 | 13 | 76 | 467 | 51 | 431 | 2.40e-38 | 145 |
| MS.gene030747.t1 | AT3G22200 | 28.267 | 375 | 242 | 11 | 84 | 433 | 79 | 451 | 2.59e-36 | 140 |
| MS.gene030747.t1 | AT3G22200 | 28.267 | 375 | 242 | 11 | 84 | 433 | 70 | 442 | 2.99e-36 | 140 |
| MS.gene030747.t1 | AT3G48730 | 26.645 | 304 | 194 | 10 | 83 | 375 | 79 | 364 | 2.74e-17 | 84.7 |
| MS.gene030747.t1 | AT5G63570 | 26.910 | 301 | 193 | 10 | 83 | 373 | 81 | 364 | 7.06e-16 | 80.5 |
| MS.gene030747.t1 | AT5G63570 | 26.910 | 301 | 193 | 10 | 83 | 373 | 18 | 301 | 7.82e-16 | 79.7 |
Find 0 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATGTTAAATTAAAATGT+AGG | + | 57602:3827-3846 | MS.gene030747:intron | 10.0% |
| !! | AAATAGTTATACTTCTTATT+TGG | - | 57602:3286-3305 | None:intergenic | 15.0% |
| !! | GAAAAAGTAAATAAAAAAGT+AGG | - | 57602:2119-2138 | None:intergenic | 15.0% |
| !! | GAGAATAATAATAAAAATTG+CGG | - | 57602:3071-3090 | None:intergenic | 15.0% |
| !! | AACATTAATATGAGATACAA+TGG | - | 57602:2607-2626 | None:intergenic | 20.0% |
| !! | AAGATTCAATTCAATACATT+TGG | + | 57602:2708-2727 | MS.gene030747:CDS | 20.0% |
| !! | ATAAAGAAATTCCTTGATAA+TGG | + | 57602:3585-3604 | MS.gene030747:intron | 20.0% |
| !! | ATTAATGTTGTTCTGTAATA+GGG | + | 57602:2618-2637 | MS.gene030747:intron | 20.0% |
| !! | TATAACTATTTACCTTCATA+TGG | + | 57602:3295-3314 | MS.gene030747:intron | 20.0% |
| !! | TATTAATGTTGTTCTGTAAT+AGG | + | 57602:2617-2636 | MS.gene030747:intron | 20.0% |
| !! | TTATATAATTTCTCAGTCAT+TGG | + | 57602:3098-3117 | MS.gene030747:intron | 20.0% |
| !!! | AATTTATGGTTTGTTAGTTT+CGG | - | 57602:1866-1885 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTAGTAGATAGT+TGG | + | 57602:3723-3742 | MS.gene030747:intron | 20.0% |
| !!! | TATACTTGTTTTAAATAACC+AGG | - | 57602:2186-2205 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTTTTCACCA+TGG | + | 57602:2123-2142 | MS.gene030747:intron | 20.0% |
| !!! | TTTTGTAATACAGTTCTTTA+CGG | + | 57602:2904-2923 | MS.gene030747:intron | 20.0% |
| ! | AAAGGCTTCAATATAAAATC+TGG | - | 57602:3453-3472 | None:intergenic | 25.0% |
| ! | ATGTATTGAATTGAATCTTC+TGG | - | 57602:2707-2726 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATACATTTGG+TGG | + | 57602:2711-2730 | MS.gene030747:CDS | 25.0% |
| ! | CACATTTAGGAAAAATAACA+TGG | - | 57602:1596-1615 | None:intergenic | 25.0% |
| ! | GTATACTGTACAAATGTATT+CGG | + | 57602:1566-1585 | MS.gene030747:intron | 25.0% |
| ! | GTGTTGTCAAGAATAATTTA+TGG | - | 57602:1880-1899 | None:intergenic | 25.0% |
| ! | TATTCCTGATATAGTTACAA+TGG | + | 57602:2308-2327 | MS.gene030747:CDS | 25.0% |
| ! | TCTATCCTGTTCAATATTTA+AGG | + | 57602:2078-2097 | MS.gene030747:intron | 25.0% |
| ! | TGTATTGAATTGAATCTTCT+GGG | - | 57602:2706-2725 | None:intergenic | 25.0% |
| ! | TTAATCTAGCATCTTAGAAA+TGG | + | 57602:2877-2896 | MS.gene030747:intron | 25.0% |
| ! | TTCAATTCAATACATTTGGT+GGG | + | 57602:2712-2731 | MS.gene030747:CDS | 25.0% |
| ! | TTTAGGAAAAATAACATGGT+TGG | - | 57602:1592-1611 | None:intergenic | 25.0% |
| !! | AGATAAATGAGTTTGATGAT+AGG | - | 57602:866-885 | None:intergenic | 25.0% |
| !! | ATTTAAGGTGGTAATTAGAT+TGG | + | 57602:2093-2112 | MS.gene030747:intron | 25.0% |
| !! | CATTATTTATGAGTTGAATG+TGG | + | 57602:3748-3767 | MS.gene030747:intron | 25.0% |
| !! | GTTGTGTATTTTGTAAATTC+TGG | + | 57602:1312-1331 | MS.gene030747:CDS | 25.0% |
| !! | TAAAACTTTTGCTGGATTAA+AGG | - | 57602:3471-3490 | None:intergenic | 25.0% |
| !! | TTAAAAGCACACTTTACATT+TGG | - | 57602:1704-1723 | None:intergenic | 25.0% |
| !! | TTTTTGATAGAAATGGAACA+AGG | - | 57602:833-852 | None:intergenic | 25.0% |
| !!! | AACAATTTTTGTTATGATGC+AGG | - | 57602:3038-3057 | None:intergenic | 25.0% |
| !!! | ACAACACATTGATTCTTTTA+GGG | + | 57602:1893-1912 | MS.gene030747:intron | 25.0% |
| !!! | CATGTTATTTTTCCTAAATG+TGG | + | 57602:1594-1613 | MS.gene030747:intron | 25.0% |
| AAATATTCACCCCATTGAAA+TGG | + | 57602:3673-3692 | MS.gene030747:intron | 30.0% | |
| AAGATGGCATTCAAAATATC+AGG | - | 57602:1059-1078 | None:intergenic | 30.0% | |
| AAGGAAAAACCCATTTCAAT+GGG | - | 57602:3686-3705 | None:intergenic | 30.0% | |
| AAGTTCTACAATCCATATGA+AGG | - | 57602:3310-3329 | None:intergenic | 30.0% | |
| AATATTCACCCCATTGAAAT+GGG | + | 57602:3674-3693 | MS.gene030747:intron | 30.0% | |
| ACACATCGAGCTAAAATTTA+AGG | - | 57602:2478-2497 | None:intergenic | 30.0% | |
| AGAAATCATACCAAGATTAC+CGG | - | 57602:1382-1401 | None:intergenic | 30.0% | |
| AGATGGCATTCAAAATATCA+GGG | - | 57602:1058-1077 | None:intergenic | 30.0% | |
| ATCCTGTTCAATATTTAAGG+TGG | + | 57602:2081-2100 | MS.gene030747:intron | 30.0% | |
| ATCTATGTACATGGATTCTT+AGG | + | 57602:2947-2966 | MS.gene030747:intron | 30.0% | |
| ATCTTGGTATGATTTCTTTG+AGG | + | 57602:1385-1404 | MS.gene030747:CDS | 30.0% | |
| CTGTAATTTATAACGCCTAT+TGG | - | 57602:1547-1566 | None:intergenic | 30.0% | |
| GATCATGATATGTTATAGTC+AGG | + | 57602:3007-3026 | MS.gene030747:intron | 30.0% | |
| GGAACTTATATTAGAAAGAG+CGG | - | 57602:3265-3284 | None:intergenic | 30.0% | |
| GTATATAATTCTGGGTTTCA+TGG | + | 57602:3777-3796 | MS.gene030747:intron | 30.0% | |
| GTTTGTGTAGTTGAATATTG+TGG | + | 57602:941-960 | MS.gene030747:intron | 30.0% | |
| TACCACCTTAAATATTGAAC+AGG | - | 57602:2086-2105 | None:intergenic | 30.0% | |
| TATACTACATAGTACATACC+TGG | - | 57602:2057-2076 | None:intergenic | 30.0% | |
| TCATCTTTACTGAAACACAT+TGG | - | 57602:3387-3406 | None:intergenic | 30.0% | |
| TCTAATGAGGTTTATTAAGC+AGG | + | 57602:2418-2437 | MS.gene030747:intron | 30.0% | |
| TCTCTTGTGTTATAGTATGA+TGG | + | 57602:1211-1230 | MS.gene030747:intron | 30.0% | |
| TGATATAGTTACAATGGCAA+AGG | + | 57602:2314-2333 | MS.gene030747:CDS | 30.0% | |
| TGCTTAATAAACCTCATTAG+AGG | - | 57602:2419-2438 | None:intergenic | 30.0% | |
| TTTGCCATTGTAACTATATC+AGG | - | 57602:2315-2334 | None:intergenic | 30.0% | |
| ! | ACTCAAAACTAGTTCTCATT+TGG | + | 57602:1727-1746 | MS.gene030747:intron | 30.0% |
| ! | ATGATCCTTTTGAATCCAAT+AGG | + | 57602:1529-1548 | MS.gene030747:intron | 30.0% |
| ! | ATTGTCAACTTTTGAATTGC+AGG | + | 57602:1290-1309 | MS.gene030747:intron | 30.0% |
| ! | CATTGGAATAAAACTTTTGC+TGG | - | 57602:3479-3498 | None:intergenic | 30.0% |
| ! | GGACTAGTGTATATAATTCT+GGG | + | 57602:3769-3788 | MS.gene030747:intron | 30.0% |
| ! | TTATTTAGTTCCTGAAACCT+TGG | + | 57602:2361-2380 | MS.gene030747:intron | 30.0% |
| ! | TTCATATGGATTGTAGAACT+TGG | + | 57602:3309-3328 | MS.gene030747:intron | 30.0% |
| !! | AAGAAATTCCTTGATAATGG+CGG | + | 57602:3588-3607 | MS.gene030747:intron | 30.0% |
| !! | AGAAAGTACCAACTATAAGA+AGG | - | 57602:3705-3724 | None:intergenic | 30.0% |
| !! | GTCTTGTTTGAAAAACTTAG+AGG | + | 57602:3206-3225 | MS.gene030747:CDS | 30.0% |
| !! | TGGACTAGTGTATATAATTC+TGG | + | 57602:3768-3787 | MS.gene030747:intron | 30.0% |
| !! | TTGTTTTACTCATTTGAGGA+CGG | + | 57602:1661-1680 | MS.gene030747:intron | 30.0% |
| !! | TTTCTAGCTATCTATGTACA+TGG | + | 57602:2938-2957 | MS.gene030747:intron | 30.0% |
| !!! | CAACTTGTTTTACTCATTTG+AGG | + | 57602:1657-1676 | MS.gene030747:intron | 30.0% |
| !!! | GACAACACATTGATTCTTTT+AGG | + | 57602:1892-1911 | MS.gene030747:intron | 30.0% |
| !!! | GTTATTTTTCCTAAATGTGG+TGG | + | 57602:1597-1616 | MS.gene030747:intron | 30.0% |
| AAATCTGCAAGCAAAGAGAA+TGG | - | 57602:3503-3522 | None:intergenic | 35.0% | |
| AAATGAATTGGCAATGCTGA+TGG | + | 57602:1344-1363 | MS.gene030747:CDS | 35.0% | |
| AAGTTTACTCTGCTCAAAGA+TGG | - | 57602:1075-1094 | None:intergenic | 35.0% | |
| ACATATCATGATCAGTTACC+AGG | - | 57602:3000-3019 | None:intergenic | 35.0% | |
| AGATTGTATACCGGTAATCT+TGG | + | 57602:1369-1388 | MS.gene030747:CDS | 35.0% | |
| AGCATGGTGTAGATAAATAG+TGG | - | 57602:1111-1130 | None:intergenic | 35.0% | |
| AGGAAAAACCCATTTCAATG+GGG | - | 57602:3685-3704 | None:intergenic | 35.0% | |
| AGTATATGACATTGTACACG+AGG | + | 57602:2200-2219 | MS.gene030747:CDS | 35.0% | |
| ATTCATAGCTGAAACAATCC+AGG | + | 57602:2036-2055 | MS.gene030747:CDS | 35.0% | |
| CAATATCTGTATGATGAAGC+TGG | + | 57602:975-994 | MS.gene030747:CDS | 35.0% | |
| CTTTGTCATAGAATAGTCCA+AGG | - | 57602:3537-3556 | None:intergenic | 35.0% | |
| GAAGGAAAAACCCATTTCAA+TGG | - | 57602:3687-3706 | None:intergenic | 35.0% | |
| GACATCTTTAGCATAGCTAT+TGG | - | 57602:1975-1994 | None:intergenic | 35.0% | |
| GATTCAAAAGGATCATATGC+AGG | - | 57602:1525-1544 | None:intergenic | 35.0% | |
| GCACTTCAAATGCATAACTA+AGG | - | 57602:2389-2408 | None:intergenic | 35.0% | |
| GTATTTCCATGTGTTAAGAG+CGG | - | 57602:1451-1470 | None:intergenic | 35.0% | |
| GTGTAGTTGAATATTGTGGA+GGG | + | 57602:945-964 | MS.gene030747:intron | 35.0% | |
| GTTGTTCTGTAATAGGGTAT+TGG | + | 57602:2624-2643 | MS.gene030747:intron | 35.0% | |
| TAACGCCTATTGGATTCAAA+AGG | - | 57602:1537-1556 | None:intergenic | 35.0% | |
| TCTTTACTGAAACACATTGG+TGG | - | 57602:3384-3403 | None:intergenic | 35.0% | |
| TGATAGAAATGGAACAAGGA+AGG | - | 57602:829-848 | None:intergenic | 35.0% | |
| TGTAGTTGAATATTGTGGAG+GGG | + | 57602:946-965 | MS.gene030747:intron | 35.0% | |
| TGTGTAGTTGAATATTGTGG+AGG | + | 57602:944-963 | MS.gene030747:intron | 35.0% | |
| TTTCACCATGGCTTATTCTA+GGG | + | 57602:2135-2154 | MS.gene030747:intron | 35.0% | |
| ! | AGTTTGATGATAGGAACTGA+CGG | - | 57602:857-876 | None:intergenic | 35.0% |
| ! | GGGTTTTTCCTTCTTATAGT+TGG | + | 57602:3694-3713 | MS.gene030747:intron | 35.0% |
| ! | TCCAAGACCATATTGACTAT+GGG | + | 57602:1993-2012 | MS.gene030747:CDS | 35.0% |
| ! | TCTTTGAGGAATGCATATCA+TGG | + | 57602:1399-1418 | MS.gene030747:CDS | 35.0% |
| ! | TTTAAGATTTCCAGGCATCT+TGG | - | 57602:1162-1181 | None:intergenic | 35.0% |
| ! | TTTGCTTGCAGATTTTCTTG+TGG | + | 57602:3508-3527 | MS.gene030747:intron | 35.0% |
| ! | TTTTCACCATGGCTTATTCT+AGG | + | 57602:2134-2153 | MS.gene030747:intron | 35.0% |
| !! | CTCTGGTTTGTTAATGTGTT+GGG | + | 57602:1263-1282 | MS.gene030747:intron | 35.0% |
| !! | TACATGGATTCTTAGGTTGA+GGG | + | 57602:2954-2973 | MS.gene030747:intron | 35.0% |
| !! | TGACTCACTTTAAGATTTCC+AGG | - | 57602:1170-1189 | None:intergenic | 35.0% |
| !! | TGGTTCTGAAGCAAATGAAT+TGG | + | 57602:1332-1351 | MS.gene030747:CDS | 35.0% |
| !!! | GATTTTTTATGACCAGCGTT+TGG | + | 57602:1749-1768 | MS.gene030747:intron | 35.0% |
| !!! | TGACGGGTTTTTGATAGAAA+TGG | - | 57602:840-859 | None:intergenic | 35.0% |
| AAGAAACAAACCTCAGGAAG+TGG | - | 57602:1474-1493 | None:intergenic | 40.0% | |
| AGAAACAAACCTCAGGAAGT+GGG | - | 57602:1473-1492 | None:intergenic | 40.0% | |
| AGCATGAAGAAACAAACCTC+AGG | - | 57602:1480-1499 | None:intergenic | 40.0% | |
| AGGAATTTCTTTATGCCAGC+AGG | - | 57602:3579-3598 | None:intergenic | 40.0% | |
| AGGTCTGCATGCAAGTAAAT+CGG | - | 57602:656-675 | None:intergenic | 40.0% | |
| ATATGATTGCATGATGCCTC+TGG | + | 57602:1246-1265 | MS.gene030747:intron | 40.0% | |
| ATTGCAGATGAAGTGCAAAC+TGG | + | 57602:2237-2256 | MS.gene030747:CDS | 40.0% | |
| CAAGCAAAGAGAATGGTCAT+TGG | - | 57602:3496-3515 | None:intergenic | 40.0% | |
| CAGGCTCAAATCAAGTAATG+AGG | - | 57602:2981-3000 | None:intergenic | 40.0% | |
| CCAACACATTAACAAACCAG+AGG | - | 57602:1265-1284 | None:intergenic | 40.0% | |
| CTGAAGTCCCATAGTCAATA+TGG | - | 57602:2003-2022 | None:intergenic | 40.0% | |
| CTGATGGCAAGATTGTATAC+CGG | + | 57602:1360-1379 | MS.gene030747:CDS | 40.0% | |
| GAAAAACAAGACACCTGCAA+AGG | + | 57602:3172-3191 | MS.gene030747:CDS | 40.0% | |
| GAAATGATTATGCATCCTGC+TGG | + | 57602:3561-3580 | MS.gene030747:intron | 40.0% | |
| GATGAAGTGCAAACTGGATT+TGG | + | 57602:2243-2262 | MS.gene030747:CDS | 40.0% | |
| GTTGTAACTACAGCTCCTAA+TGG | - | 57602:2660-2679 | None:intergenic | 40.0% | |
| TAAATCGGAACGGTTAGGTT+TGG | - | 57602:641-660 | None:intergenic | 40.0% | |
| TATCTATGATCAGCCCACAA+AGG | - | 57602:1776-1795 | None:intergenic | 40.0% | |
| TCCAGAAATTGCAAGTGTGA+TGG | + | 57602:2680-2699 | MS.gene030747:CDS | 40.0% | |
| TCCCATAGTCAATATGGTCT+TGG | - | 57602:1997-2016 | None:intergenic | 40.0% | |
| TGCATGCAAGTAAATCGGAA+CGG | - | 57602:651-670 | None:intergenic | 40.0% | |
| TGTTTCAGTAAAGATGACGC+AGG | + | 57602:3390-3409 | MS.gene030747:CDS | 40.0% | |
| TTCACCATGGCTTATTCTAG+GGG | + | 57602:2136-2155 | MS.gene030747:intron | 40.0% | |
| TTGAGGAATGCATATCATGG+AGG | + | 57602:1402-1421 | MS.gene030747:CDS | 40.0% | |
| TTTCCTAAATGTGGTGGTTG+CGG | + | 57602:1603-1622 | MS.gene030747:intron | 40.0% | |
| ! | AATGCATAACTAAGGTGCCA+AGG | - | 57602:2381-2400 | None:intergenic | 40.0% |
| ! | AGATTTTCTTGTGGATGCCT+TGG | + | 57602:3517-3536 | MS.gene030747:intron | 40.0% |
| ! | ATTGGCAATGGTTTGCCATT+AGG | + | 57602:2642-2661 | MS.gene030747:CDS | 40.0% |
| ! | CATATTGACTATGGGACTTC+AGG | + | 57602:2001-2020 | MS.gene030747:CDS | 40.0% |
| ! | CTCATTACTTGATTTGAGCC+TGG | + | 57602:2979-2998 | MS.gene030747:intron | 40.0% |
| ! | GACTGCATGGAAATGTTTTC+AGG | + | 57602:3352-3371 | MS.gene030747:CDS | 40.0% |
| ! | GGAGGAAGTTCTAGTACAAT+GGG | + | 57602:1420-1439 | MS.gene030747:CDS | 40.0% |
| ! | GTACATGGATTCTTAGGTTG+AGG | + | 57602:2953-2972 | MS.gene030747:intron | 40.0% |
| ! | GTCCAAGACCATATTGACTA+TGG | + | 57602:1992-2011 | MS.gene030747:CDS | 40.0% |
| ! | GTGGGCTGATCATAGATATT+AGG | + | 57602:1778-1797 | MS.gene030747:intron | 40.0% |
| ! | GTTACCTTGATGCTTTTGCT+GGG | + | 57602:1003-1022 | MS.gene030747:CDS | 40.0% |
| ! | GTTTGATGATAGGAACTGAC+GGG | - | 57602:856-875 | None:intergenic | 40.0% |
| ! | TAGAACTTGGCATTCTAGCT+GGG | + | 57602:3322-3341 | MS.gene030747:intron | 40.0% |
| ! | TGGAGGAAGTTCTAGTACAA+TGG | + | 57602:1419-1438 | MS.gene030747:CDS | 40.0% |
| !! | CCTCTGGTTTGTTAATGTGT+TGG | + | 57602:1262-1281 | MS.gene030747:intron | 40.0% |
| !! | CTGTAATAGGGTATTGGCAA+TGG | + | 57602:2630-2649 | MS.gene030747:intron | 40.0% |
| !!! | TTGCAGGTGTCTTGTTTTTC+CGG | - | 57602:3172-3191 | None:intergenic | 40.0% |
| AAGATTTCCAGGCATCTTGG+CGG | - | 57602:1159-1178 | None:intergenic | 45.0% | |
| AATGGCGGCAAATTGCTACA+TGG | + | 57602:3603-3622 | MS.gene030747:intron | 45.0% | |
| ACGCTTGGCGAATACTTCAT+CGG | - | 57602:791-810 | None:intergenic | 45.0% | |
| ATGGAAATACCCACTTCCTG+AGG | + | 57602:1461-1480 | MS.gene030747:CDS | 45.0% | |
| CTGGGTTTCATGGCATCAAA+AGG | + | 57602:3787-3806 | MS.gene030747:intron | 45.0% | |
| GATGGTCCATTATACGGATG+AGG | - | 57602:766-785 | None:intergenic | 45.0% | |
| GCAAGTAAATCGGAACGGTT+AGG | - | 57602:646-665 | None:intergenic | 45.0% | |
| GCAATTTGCCGCCATTATCA+AGG | - | 57602:3599-3618 | None:intergenic | 45.0% | |
| GCCATCACACTTGCAATTTC+TGG | - | 57602:2684-2703 | None:intergenic | 45.0% | |
| GTAGAACTTGGCATTCTAGC+TGG | + | 57602:3321-3340 | MS.gene030747:intron | 45.0% | |
| GTGTCTCGAATCCCCAATAA+TGG | - | 57602:2281-2300 | None:intergenic | 45.0% | |
| TATGACATTGTACACGAGGC+TGG | + | 57602:2204-2223 | MS.gene030747:CDS | 45.0% | |
| TATTGGGGATTCGAGACACA+GGG | + | 57602:2282-2301 | MS.gene030747:CDS | 45.0% | |
| TCACCATGGCTTATTCTAGG+GGG | + | 57602:2137-2156 | MS.gene030747:intron | 45.0% | |
| TCAGTAAAGATGACGCAGGT+AGG | + | 57602:3394-3413 | MS.gene030747:intron | 45.0% | |
| TTATTGGGGATTCGAGACAC+AGG | + | 57602:2281-2300 | MS.gene030747:CDS | 45.0% | |
| ! | AACTAAGGTGCCAAGGTTTC+AGG | - | 57602:2374-2393 | None:intergenic | 45.0% |
| ! | CGTTACCTTGATGCTTTTGC+TGG | + | 57602:1002-1021 | MS.gene030747:CDS | 45.0% |
| !! | AGGTTCTGGATAACGAGAAG+CGG | + | 57602:2772-2791 | MS.gene030747:CDS | 45.0% |
| !! | CAATCCCAGCAAAAGCATCA+AGG | - | 57602:1010-1029 | None:intergenic | 45.0% |
| !! | CTCAGTCATTGGTGATGTGA+GGG | + | 57602:3109-3128 | MS.gene030747:intron | 45.0% |
| !! | GGGATTGTTACTGTTTCTGC+TGG | + | 57602:1023-1042 | MS.gene030747:CDS | 45.0% |
| !! | TCAGTCATTGGTGATGTGAG+GGG | + | 57602:3110-3129 | MS.gene030747:intron | 45.0% |
| !! | TCTCAGTCATTGGTGATGTG+AGG | + | 57602:3108-3127 | MS.gene030747:intron | 45.0% |
| !!! | AGGTGTCTTGTTTTTCCGGT+CGG | - | 57602:3168-3187 | None:intergenic | 45.0% |
| AATGGAACAAGGAAGGACCG+AGG | - | 57602:822-841 | None:intergenic | 50.0% | |
| ACAGCAGTTTCAGCCTTTGC+AGG | - | 57602:3188-3207 | None:intergenic | 50.0% | |
| ACCAGCGTTTGGACCTTTGT+GGG | + | 57602:1760-1779 | MS.gene030747:intron | 50.0% | |
| ACCGAGGAACTGTTTACGCT+TGG | - | 57602:806-825 | None:intergenic | 50.0% | |
| ACTTGCAGTGCTCAAGGTTC+TGG | + | 57602:2758-2777 | MS.gene030747:CDS | 50.0% | |
| AGGGGAAGAGGACTAATGCT+GGG | + | 57602:3128-3147 | MS.gene030747:CDS | 50.0% | |
| AGTAGTGATGGTTTGAGGGG+CGG | - | 57602:713-732 | None:intergenic | 50.0% | |
| AGTCCGCAACCACCACATTT+AGG | - | 57602:1609-1628 | None:intergenic | 50.0% | |
| ATGAATCCAGACCCATACCG+TGG | + | 57602:1932-1951 | MS.gene030747:CDS | 50.0% | |
| CAACCCCCTAGAATAAGCCA+TGG | - | 57602:2143-2162 | None:intergenic | 50.0% | |
| CACCAAAGACTCCACGGTAT+GGG | - | 57602:1946-1965 | None:intergenic | 50.0% | |
| CACCAGCCTCATCCGTATAA+TGG | + | 57602:757-776 | MS.gene030747:CDS | 50.0% | |
| CATCTGCACCAAAGACTCCA+CGG | - | 57602:1952-1971 | None:intergenic | 50.0% | |
| CCCAATAATGGCTTCCTGTG+CGG | - | 57602:2269-2288 | None:intergenic | 50.0% | |
| CCGCACAGGAAGCCATTATT+GGG | + | 57602:2266-2285 | MS.gene030747:CDS | 50.0% | |
| CGCACAGGAAGCCATTATTG+GGG | + | 57602:2267-2286 | MS.gene030747:CDS | 50.0% | |
| CGGAGTAGTGATGGTTTGAG+GGG | - | 57602:716-735 | None:intergenic | 50.0% | |
| CGGCGAAATCAGCAATAGCA+TGG | - | 57602:1127-1146 | None:intergenic | 50.0% | |
| CTTGGCGAATACTTCATCGG+CGG | - | 57602:788-807 | None:intergenic | 50.0% | |
| GAGGATCGGAGAGAAGAGAA+AGG | - | 57602:676-695 | None:intergenic | 50.0% | |
| GCCAAGCGTAAACAGTTCCT+CGG | + | 57602:802-821 | MS.gene030747:CDS | 50.0% | |
| GCGGAGTAGTGATGGTTTGA+GGG | - | 57602:717-736 | None:intergenic | 50.0% | |
| GGGACTTCAGGAAAAGTTGC+TGG | + | 57602:2013-2032 | MS.gene030747:CDS | 50.0% | |
| GTCCATTATACGGATGAGGC+TGG | - | 57602:762-781 | None:intergenic | 50.0% | |
| GTCTCACCGCTCTTAACACA+TGG | + | 57602:1442-1461 | MS.gene030747:CDS | 50.0% | |
| GTGATCTCAAACGCTCAAGC+AGG | - | 57602:2827-2846 | None:intergenic | 50.0% | |
| GTGCAGCATTGCCTCTAATG+AGG | + | 57602:2405-2424 | MS.gene030747:intron | 50.0% | |
| TCGGCGGATGGTCCATTATA+CGG | - | 57602:772-791 | None:intergenic | 50.0% | |
| ! | CATGGCTTATTCTAGGGGGT+TGG | + | 57602:2141-2160 | MS.gene030747:intron | 50.0% |
| ! | CTTGGCATTCTAGCTGGGAA+AGG | + | 57602:3327-3346 | MS.gene030747:CDS | 50.0% |
| !! | ATTGGTGATGTGAGGGGAAG+AGG | + | 57602:3116-3135 | MS.gene030747:CDS | 50.0% |
| !! | TGCTATTGCTGATTTCGCCG+AGG | + | 57602:1127-1146 | MS.gene030747:CDS | 50.0% |
| AAGACTCCACGGTATGGGTC+TGG | - | 57602:1941-1960 | None:intergenic | 55.0% | |
| AAGTCCCCCGGCAGAACATA+CGG | - | 57602:2742-2761 | None:intergenic | 55.0% | |
| AATCTGCGGCGGAGTAGTGA+TGG | - | 57602:725-744 | None:intergenic | 55.0% | |
| CAAACTGGATTTGGCCGCAC+AGG | + | 57602:2252-2271 | MS.gene030747:CDS | 55.0% | |
| GACATTGTACACGAGGCTGG+TGG | + | 57602:2207-2226 | MS.gene030747:CDS | 55.0% | |
| GACCAGCGTTTGGACCTTTG+TGG | + | 57602:1759-1778 | MS.gene030747:intron | 55.0% | |
| GACCCATACCGTGGAGTCTT+TGG | + | 57602:1941-1960 | MS.gene030747:CDS | 55.0% | |
| GAGGGGAAGAGGACTAATGC+TGG | + | 57602:3127-3146 | MS.gene030747:CDS | 55.0% | |
| GCACCAAAGACTCCACGGTA+TGG | - | 57602:1947-1966 | None:intergenic | 55.0% | |
| GCCGCACAGGAAGCCATTAT+TGG | + | 57602:2265-2284 | MS.gene030747:CDS | 55.0% | |
| GCGAATACTTCATCGGCGGA+TGG | - | 57602:784-803 | None:intergenic | 55.0% | |
| GGAGCAGTTGAACTCGTACC+TGG | + | 57602:2165-2184 | MS.gene030747:CDS | 55.0% | |
| GGATGAGGCTGGTGATCGAA+CGG | - | 57602:751-770 | None:intergenic | 55.0% | |
| GGCGGAGTAGTGATGGTTTG+AGG | - | 57602:718-737 | None:intergenic | 55.0% | |
| GGGAAGAGGACTAATGCTGG+GGG | + | 57602:3130-3149 | MS.gene030747:CDS | 55.0% | |
| GGGGAAGAGGACTAATGCTG+GGG | + | 57602:3129-3148 | MS.gene030747:CDS | 55.0% | |
| TCTGGATAACGAGAAGCGGC+AGG | + | 57602:2776-2795 | MS.gene030747:CDS | 55.0% | |
| TGATCGAACGGCGGAATCTG+CGG | - | 57602:739-758 | None:intergenic | 55.0% | |
| ! | CAGGCTCATTGCGCTGATGT+TGG | + | 57602:2795-2814 | MS.gene030747:CDS | 55.0% |
| ! | GGCATTCTAGCTGGGAAAGG+AGG | + | 57602:3330-3349 | MS.gene030747:CDS | 55.0% |
| ! | GGCTTATTCTAGGGGGTTGG+AGG | + | 57602:2144-2163 | MS.gene030747:intron | 55.0% |
| !! | GGGTAGAGCTTGTTACCGAC+CGG | + | 57602:3150-3169 | MS.gene030747:CDS | 55.0% |
| !! | TGCTGATTTCGCCGAGGCTT+TGG | + | 57602:1133-1152 | MS.gene030747:CDS | 55.0% |
| AACCCCGTATGTTCTGCCGG+GGG | + | 57602:2735-2754 | MS.gene030747:CDS | 60.0% | |
| AGTCCCCCGGCAGAACATAC+GGG | - | 57602:2741-2760 | None:intergenic | 60.0% | |
| AGTGATGGTTTGAGGGGCGG+TGG | - | 57602:710-729 | None:intergenic | 60.0% | |
| CATCTTGGCGGCCAAAGCCT+CGG | - | 57602:1147-1166 | None:intergenic | 60.0% | |
| GAACCCCGTATGTTCTGCCG+GGG | + | 57602:2734-2753 | MS.gene030747:CDS | 60.0% | |
| GCCCACAAAGGTCCAAACGC+TGG | - | 57602:1764-1783 | None:intergenic | 60.0% | |
| GCTGGGAAAGGAGGACTGCA+TGG | + | 57602:3339-3358 | MS.gene030747:CDS | 60.0% | |
| GGAACCCCGTATGTTCTGCC+GGG | + | 57602:2733-2752 | MS.gene030747:CDS | 60.0% | |
| GGGAACCCCGTATGTTCTGC+CGG | + | 57602:2732-2751 | MS.gene030747:CDS | 60.0% | |
| TGAGGCTGGTGATCGAACGG+CGG | - | 57602:748-767 | None:intergenic | 60.0% | |
| ! | CTTGAGCACTGCAAGTCCCC+CGG | - | 57602:2754-2773 | None:intergenic | 60.0% |
| CGGGGGACTTGCAGTGCTCA+AGG | + | 57602:2752-2771 | MS.gene030747:CDS | 65.0% | |
| GATGGTTTGAGGGGCGGTGG+CGG | - | 57602:707-726 | None:intergenic | 65.0% | |
| GCTTTGGCCGCCAAGATGCC+TGG | + | 57602:1149-1168 | MS.gene030747:CDS | 65.0% | |
| GTCCCCCGGCAGAACATACG+GGG | - | 57602:2740-2759 | None:intergenic | 65.0% | |
| TCGAACGGCGGAATCTGCGG+CGG | - | 57602:736-755 | None:intergenic | 65.0% | |
| !! | TGGCGGTGGCGGAGGAGGAT+CGG | - | 57602:690-709 | None:intergenic | 70.0% |
| ! | GGTTTGAGGGGCGGTGGCGG+TGG | - | 57602:704-723 | None:intergenic | 75.0% |
| ! | TTGAGGGGCGGTGGCGGTGG+CGG | - | 57602:701-720 | None:intergenic | 75.0% |
| !! | AGGGGCGGTGGCGGTGGCGG+AGG | - | 57602:698-717 | None:intergenic | 85.0% |
| !!! | GGCGGTGGCGGTGGCGGAGG+AGG | - | 57602:695-714 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57602 | gene | 604 | 3883 | 604 | ID=MS.gene030747 |
| 57602 | mRNA | 604 | 3883 | 604 | ID=MS.gene030747.t1;Parent=MS.gene030747 |
| 57602 | exon | 604 | 855 | 604 | ID=MS.gene030747.t1.exon1;Parent=MS.gene030747.t1 |
| 57602 | CDS | 604 | 855 | 604 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 951 | 1181 | 951 | ID=MS.gene030747.t1.exon2;Parent=MS.gene030747.t1 |
| 57602 | CDS | 951 | 1181 | 951 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 1312 | 1482 | 1312 | ID=MS.gene030747.t1.exon3;Parent=MS.gene030747.t1 |
| 57602 | CDS | 1312 | 1482 | 1312 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 1914 | 2057 | 1914 | ID=MS.gene030747.t1.exon4;Parent=MS.gene030747.t1 |
| 57602 | CDS | 1914 | 2057 | 1914 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 2156 | 2335 | 2156 | ID=MS.gene030747.t1.exon5;Parent=MS.gene030747.t1 |
| 57602 | CDS | 2156 | 2335 | 2156 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 2639 | 2864 | 2639 | ID=MS.gene030747.t1.exon6;Parent=MS.gene030747.t1 |
| 57602 | CDS | 2639 | 2864 | 2639 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 3114 | 3227 | 3114 | ID=MS.gene030747.t1.exon7;Parent=MS.gene030747.t1 |
| 57602 | CDS | 3114 | 3227 | 3114 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 3325 | 3411 | 3325 | ID=MS.gene030747.t1.exon8;Parent=MS.gene030747.t1 |
| 57602 | CDS | 3325 | 3411 | 3325 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| 57602 | exon | 3849 | 3883 | 3849 | ID=MS.gene030747.t1.exon9;Parent=MS.gene030747.t1 |
| 57602 | CDS | 3849 | 3883 | 3849 | ID=cds.MS.gene030747.t1;Parent=MS.gene030747.t1 |
| Gene Sequence |
| Protein sequence |
