Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050272.t1 | XP_013448465.1 | 93.6 | 470 | 27 | 1 | 1 | 467 | 1 | 470 | 2.20E-248 | 867.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050272.t1 | Q9M8M7 | 73.8 | 420 | 108 | 1 | 45 | 464 | 40 | 457 | 9.9e-181 | 634.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050272.t1 | A0A072TYI8 | 93.6 | 470 | 27 | 1 | 1 | 467 | 1 | 470 | 1.6e-248 | 867.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050272.t1 | MTR_7g451450 | 95.983 | 473 | 10 | 2 | 1 | 467 | 1 | 470 | 0.0 | 923 |
| MS.gene050272.t1 | MTR_3g465800 | 32.168 | 429 | 243 | 12 | 67 | 460 | 55 | 470 | 1.78e-57 | 197 |
| MS.gene050272.t1 | MTR_3g465800 | 32.439 | 410 | 232 | 11 | 83 | 460 | 3 | 399 | 2.79e-55 | 189 |
| MS.gene050272.t1 | MTR_7g072420 | 30.414 | 411 | 245 | 10 | 80 | 460 | 79 | 478 | 1.86e-48 | 173 |
| MS.gene050272.t1 | MTR_8g091660 | 29.340 | 409 | 252 | 10 | 80 | 460 | 79 | 478 | 2.89e-44 | 162 |
| MS.gene050272.t1 | MTR_4g076100 | 28.235 | 425 | 252 | 13 | 84 | 461 | 81 | 499 | 3.78e-40 | 151 |
| MS.gene050272.t1 | MTR_3g118070 | 34.448 | 299 | 169 | 10 | 84 | 368 | 19 | 304 | 4.04e-34 | 132 |
| MS.gene050272.t1 | MTR_3g118070 | 34.448 | 299 | 169 | 10 | 84 | 368 | 76 | 361 | 5.75e-34 | 133 |
| MS.gene050272.t1 | MTR_4g076100 | 27.978 | 361 | 209 | 12 | 146 | 461 | 1 | 355 | 1.84e-29 | 119 |
| MS.gene050272.t1 | MTR_8g007510 | 63.158 | 57 | 20 | 1 | 49 | 105 | 54 | 109 | 4.25e-16 | 74.7 |
| MS.gene050272.t1 | MTR_4g128620 | 24.289 | 387 | 199 | 15 | 142 | 439 | 416 | 797 | 3.09e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050272.t1 | AT1G80600 | 73.810 | 420 | 108 | 1 | 45 | 464 | 40 | 457 | 0.0 | 652 |
| MS.gene050272.t1 | AT5G46180 | 29.902 | 408 | 270 | 7 | 67 | 462 | 42 | 445 | 5.64e-52 | 182 |
| MS.gene050272.t1 | AT4G39660 | 28.541 | 466 | 273 | 9 | 29 | 463 | 40 | 476 | 1.60e-48 | 173 |
| MS.gene050272.t1 | AT2G38400 | 30.176 | 454 | 267 | 13 | 38 | 460 | 40 | 474 | 3.57e-48 | 172 |
| MS.gene050272.t1 | AT2G38400 | 30.995 | 442 | 255 | 13 | 38 | 448 | 40 | 462 | 1.69e-47 | 171 |
| MS.gene050272.t1 | AT4G39660 | 30.273 | 403 | 244 | 7 | 89 | 463 | 8 | 401 | 8.16e-46 | 164 |
| MS.gene050272.t1 | AT3G08860 | 29.302 | 430 | 258 | 13 | 65 | 460 | 61 | 478 | 1.40e-45 | 166 |
| MS.gene050272.t1 | AT3G08860 | 30.622 | 418 | 238 | 15 | 65 | 445 | 61 | 463 | 4.44e-44 | 161 |
| MS.gene050272.t1 | AT3G22200 | 28.271 | 428 | 247 | 13 | 84 | 460 | 70 | 488 | 8.06e-41 | 153 |
| MS.gene050272.t1 | AT3G22200 | 28.271 | 428 | 247 | 13 | 84 | 460 | 79 | 497 | 9.19e-41 | 153 |
| MS.gene050272.t1 | AT3G48730 | 30.530 | 321 | 173 | 12 | 84 | 377 | 80 | 377 | 3.15e-33 | 131 |
| MS.gene050272.t1 | AT5G63570 | 29.595 | 321 | 176 | 11 | 84 | 377 | 19 | 316 | 5.14e-31 | 124 |
| MS.gene050272.t1 | AT5G63570 | 30.195 | 308 | 168 | 10 | 84 | 367 | 82 | 366 | 9.91e-31 | 124 |
| MS.gene050272.t1 | AT5G57590 | 23.043 | 447 | 240 | 18 | 90 | 439 | 367 | 806 | 5.63e-14 | 75.1 |
Find 109 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTCCAACATCTACTTTA+AGG | 0.107418 | 7.1:+52459520 | None:intergenic |
| CTTTGGGCTCATGAGGCTTT+TGG | 0.183219 | 7.1:-52454951 | MS.gene050272:CDS |
| AAGCCAAACTTTGCATGTTT+TGG | 0.212771 | 7.1:-52454484 | MS.gene050272:CDS |
| TAGGTAGATCAGGATTTCTT+TGG | 0.249427 | 7.1:-52454968 | MS.gene050272:CDS |
| GTCGCTTCTGCTATAAATTA+TGG | 0.260232 | 7.1:-52454849 | MS.gene050272:CDS |
| CATCCAAAACATGCAAAGTT+TGG | 0.263191 | 7.1:+52454481 | None:intergenic |
| GTAGATGCTTGCCGAAATTC+TGG | 0.264977 | 7.1:-52454603 | MS.gene050272:CDS |
| TGTTGAAGGGAATGAGTATT+TGG | 0.291665 | 7.1:-52459367 | MS.gene050272:CDS |
| CGTGGTGTGGGGCTAATTAT+AGG | 0.304746 | 7.1:-52454657 | MS.gene050272:CDS |
| CGAAATACTTGTGATGAAAC+TGG | 0.311882 | 7.1:-52455803 | MS.gene050272:CDS |
| TTGTAGGTTCAATGTGGTTT+AGG | 0.327079 | 7.1:-52454987 | MS.gene050272:intron |
| AGGTAGATCAGGATTTCTTT+GGG | 0.352648 | 7.1:-52454967 | MS.gene050272:CDS |
| GATCGAGGGTAGTGAAGAAT+TGG | 0.360773 | 7.1:+52459564 | None:intergenic |
| CTGGAAAAGGTAATGTTGTT+AGG | 0.365988 | 7.1:-52454563 | MS.gene050272:CDS |
| TTTGGCAAGTGTCATTATAT+CGG | 0.381895 | 7.1:+52454920 | None:intergenic |
| TGCTCCAACATCTACTTTAA+GGG | 0.386778 | 7.1:+52459521 | None:intergenic |
| GGAGTGACCTTTGTAGAGTA+TGG | 0.390033 | 7.1:-52455944 | MS.gene050272:CDS |
| CAATGTGGTTTAGGTAGATC+AGG | 0.393669 | 7.1:-52454978 | MS.gene050272:CDS |
| ATCGAGGGTAGTGAAGAATT+GGG | 0.396352 | 7.1:+52459565 | None:intergenic |
| ATACGAGAAGGCCAGAATTT+CGG | 0.398348 | 7.1:+52454592 | None:intergenic |
| ATCAGATAGGAAAGTAGGTT+TGG | 0.398612 | 7.1:+52454755 | None:intergenic |
| ACACTTGCCAAACCTCTTGC+TGG | 0.401411 | 7.1:-52454909 | MS.gene050272:CDS |
| TTGGCAAGTGTCATTATATC+GGG | 0.403382 | 7.1:+52454921 | None:intergenic |
| AATAGCTGCTTCATTTGCTT+CGG | 0.404945 | 7.1:+52456126 | None:intergenic |
| CTGTCTTCTACAATTGCGTT+TGG | 0.405169 | 7.1:+52459498 | None:intergenic |
| AAGGTCACTCCAGGCATAAC+AGG | 0.408049 | 7.1:+52455956 | None:intergenic |
| TATAGCAGAAGCGACTTTCT+CGG | 0.409460 | 7.1:+52454857 | None:intergenic |
| TTCCCTTTCTCAAGCACAAT+CGG | 0.410612 | 7.1:+52459408 | None:intergenic |
| CTTGCTGGAGGCCTACCTAT+TGG | 0.419628 | 7.1:-52454894 | MS.gene050272:CDS |
| CTATCTGATGTATCAAAGAA+AGG | 0.423170 | 7.1:-52454741 | MS.gene050272:CDS |
| TGTATATTCCTCCTTCTCCT+TGG | 0.425017 | 7.1:+52455855 | None:intergenic |
| GATACATCAGATAGGAAAGT+AGG | 0.426197 | 7.1:+52454750 | None:intergenic |
| ACCGTTGATTATAACAGAAC+AGG | 0.426298 | 7.1:-52454532 | MS.gene050272:CDS |
| TGCTTTCATGGGAGAACCCT+GGG | 0.432453 | 7.1:-52456025 | MS.gene050272:CDS |
| GTTACGAGGACGGCTCCAAT+AGG | 0.437400 | 7.1:+52454879 | None:intergenic |
| ATTCCTCCTTCTCCTTGGAT+AGG | 0.444178 | 7.1:+52455860 | None:intergenic |
| CTTTCTTTGATACATCAGAT+AGG | 0.446280 | 7.1:+52454742 | None:intergenic |
| ATAAGTACCCACTATGTACT+TGG | 0.457777 | 7.1:+52459440 | None:intergenic |
| AGACTGTAGAAATTCTTTAG+TGG | 0.459904 | 7.1:+52455829 | None:intergenic |
| GGCCTTCTCGTATTGACAGC+TGG | 0.463785 | 7.1:-52454582 | MS.gene050272:CDS |
| GAAATGGGTGAGTTTGTTGT+TGG | 0.468980 | 7.1:+52459617 | None:intergenic |
| TTGGTCATGGCGATGATGAT+TGG | 0.471593 | 7.1:-52459314 | MS.gene050272:CDS |
| GCACCGATTGTGCTTGAGAA+AGG | 0.472175 | 7.1:-52459411 | MS.gene050272:CDS |
| AAAGCTGTTGTTGATCAAGC+TGG | 0.473890 | 7.1:-52459288 | MS.gene050272:CDS |
| CTCGTATTGACAGCTGGAAA+AGG | 0.480126 | 7.1:-52454576 | MS.gene050272:CDS |
| TAGGCCTCCAGCAAGAGGTT+TGG | 0.481587 | 7.1:+52454902 | None:intergenic |
| TATTTATCACTCTCTTCCTC+AGG | 0.482900 | 7.1:-52459244 | MS.gene050272:intron |
| AGGATTTCTTTGGGCTCATG+AGG | 0.494994 | 7.1:-52454958 | MS.gene050272:CDS |
| ACTTTAAGGGATGCGGTTGG+TGG | 0.507591 | 7.1:+52459534 | None:intergenic |
| AACATCTACTTTAAGGGATG+CGG | 0.507838 | 7.1:+52459527 | None:intergenic |
| CAGAAACACACATGTACTGA+TGG | 0.518706 | 7.1:-52456085 | MS.gene050272:CDS |
| GGGATTGCTGTTAATGCACT+TGG | 0.523563 | 7.1:-52459333 | MS.gene050272:CDS |
| CACCGATTGTGCTTGAGAAA+GGG | 0.524263 | 7.1:-52459410 | MS.gene050272:CDS |
| AGAGCAGCATTACAAATAAG+TGG | 0.524312 | 7.1:+52454798 | None:intergenic |
| TGTTGTTTGCAGAAATGTGG+TGG | 0.527430 | 7.1:+52459649 | None:intergenic |
| AGACGTGTCCGCAACACCAT+TGG | 0.530042 | 7.1:-52454625 | MS.gene050272:CDS |
| TCCTGTTCTGTTATAATCAA+CGG | 0.530607 | 7.1:+52454531 | None:intergenic |
| CCAGGCATAACAGGTTCAAA+AGG | 0.533452 | 7.1:+52455965 | None:intergenic |
| GTGAAAGAGATTCGTGGTGT+GGG | 0.533958 | 7.1:-52454669 | MS.gene050272:CDS |
| GAGTATTTGGATTGTAGTGG+TGG | 0.536009 | 7.1:-52459354 | MS.gene050272:CDS |
| CAGTGTGAAGAAGACTAAAG+AGG | 0.536780 | 7.1:-52459478 | MS.gene050272:CDS |
| GCTGTTAATGCACTTGGTCA+TGG | 0.540804 | 7.1:-52459327 | MS.gene050272:CDS |
| TGTAAAGTGTATGATGTTGA+AGG | 0.545867 | 7.1:-52459381 | MS.gene050272:CDS |
| AGCATCTACCAATGGTGTTG+CGG | 0.547220 | 7.1:+52454617 | None:intergenic |
| TACTCTACAAAGGTCACTCC+AGG | 0.547621 | 7.1:+52455947 | None:intergenic |
| TGAATTAACTCTACAGCGGC+CGG | 0.554420 | 7.1:+52455914 | None:intergenic |
| TTGCTTTCATGGGAGAACCC+TGG | 0.557270 | 7.1:-52456026 | MS.gene050272:CDS |
| CGACATGTGAAAGAGATTCG+TGG | 0.557274 | 7.1:-52454675 | MS.gene050272:CDS |
| CTTTAAGGGATGCGGTTGGT+GGG | 0.559069 | 7.1:+52459535 | None:intergenic |
| TGTCAAAGCAAGTGCACCCA+GGG | 0.560401 | 7.1:+52456009 | None:intergenic |
| GACACTTCTTGTGTTTGATG+AGG | 0.562294 | 7.1:-52455780 | MS.gene050272:intron |
| GTAGAACCTATCCAAGGAGA+AGG | 0.564280 | 7.1:-52455866 | MS.gene050272:CDS |
| GCTATAAATTATGGTGACCA+TGG | 0.565722 | 7.1:-52454840 | MS.gene050272:CDS |
| TTGTGTTGTTTGCAGAAATG+TGG | 0.566796 | 7.1:+52459646 | None:intergenic |
| GCATCCCTTAAAGTAGATGT+TGG | 0.569300 | 7.1:-52459525 | MS.gene050272:CDS |
| TGAAGAAGCCAAGTACATAG+TGG | 0.571534 | 7.1:-52459448 | MS.gene050272:CDS |
| GACTTTCTCGGTTACGAGGA+CGG | 0.580932 | 7.1:+52454869 | None:intergenic |
| GTTGGTGGGAGCAGTGATCG+AGG | 0.582595 | 7.1:+52459549 | None:intergenic |
| ACATAGTGGGTACTTATGCA+AGG | 0.583360 | 7.1:-52459434 | MS.gene050272:CDS |
| AATGAGTATTTGGATTGTAG+TGG | 0.589682 | 7.1:-52459357 | MS.gene050272:CDS |
| TCGAGGGTAGTGAAGAATTG+GGG | 0.590529 | 7.1:+52459566 | None:intergenic |
| CACCTGCAAAAGTACTTCCA+TGG | 0.596537 | 7.1:+52454823 | None:intergenic |
| AAGCGACTTTCTCGGTTACG+AGG | 0.599730 | 7.1:+52454865 | None:intergenic |
| AAGCTGTTGTTGATCAAGCT+GGG | 0.600000 | 7.1:-52459287 | MS.gene050272:CDS |
| ATTGTGCTTGAGAAAGGGAA+AGG | 0.601270 | 7.1:-52459405 | MS.gene050272:CDS |
| TTCCAGCTGTCAATACGAGA+AGG | 0.607878 | 7.1:+52454580 | None:intergenic |
| GTTGTTTGCAGAAATGTGGT+GGG | 0.608903 | 7.1:+52459650 | None:intergenic |
| AGAAACACACATGTACTGAT+GGG | 0.611638 | 7.1:-52456084 | MS.gene050272:CDS |
| TTGTCAAAGCAAGTGCACCC+AGG | 0.612655 | 7.1:+52456008 | None:intergenic |
| GAACCTATCCAAGGAGAAGG+AGG | 0.615524 | 7.1:-52455863 | MS.gene050272:CDS |
| ATAGGTAGGCCTCCAGCAAG+AGG | 0.618364 | 7.1:+52454897 | None:intergenic |
| GAAGAAGCCAAGTACATAGT+GGG | 0.622654 | 7.1:-52459447 | MS.gene050272:CDS |
| TGTAGAGTATGGAAATGCAC+CGG | 0.628371 | 7.1:-52455933 | MS.gene050272:CDS |
| TTGGTGGGAGCAGTGATCGA+GGG | 0.633959 | 7.1:+52459550 | None:intergenic |
| GTAAAGTGTATGATGTTGAA+GGG | 0.636015 | 7.1:-52459380 | MS.gene050272:CDS |
| TCTACTTTAAGGGATGCGGT+TGG | 0.636417 | 7.1:+52459531 | None:intergenic |
| CGAGGACGGCTCCAATAGGT+AGG | 0.637097 | 7.1:+52454883 | None:intergenic |
| CATAGTGGGTACTTATGCAA+GGG | 0.639478 | 7.1:-52459433 | MS.gene050272:CDS |
| TGTGAAAGAGATTCGTGGTG+TGG | 0.640546 | 7.1:-52454670 | MS.gene050272:CDS |
| TGCATTTCCATACTCTACAA+AGG | 0.641793 | 7.1:+52455937 | None:intergenic |
| AGTATTTGGATTGTAGTGGT+GGG | 0.647378 | 7.1:-52459353 | MS.gene050272:CDS |
| TTTCGGCAAGCATCTACCAA+TGG | 0.657642 | 7.1:+52454609 | None:intergenic |
| GAAATACTTGTGATGAAACT+GGG | 0.661945 | 7.1:-52455802 | MS.gene050272:CDS |
| CTTGCCAAACCTCTTGCTGG+AGG | 0.671134 | 7.1:-52454906 | MS.gene050272:CDS |
| GCTGTAGAGTTAATTCAGCA+AGG | 0.672063 | 7.1:-52455908 | MS.gene050272:CDS |
| TGGCAAGTGTCATTATATCG+GGG | 0.674684 | 7.1:+52454922 | None:intergenic |
| TGAAAGAGATTCGTGGTGTG+GGG | 0.698421 | 7.1:-52454668 | MS.gene050272:CDS |
| TGTTCTGTTATAATCAACGG+TGG | 0.707523 | 7.1:+52454534 | None:intergenic |
| TTGCTGAATTAACTCTACAG+CGG | 0.733803 | 7.1:+52455910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTGTTTATTGTAAATAAT+TGG | - | chr7.1:52455635-52455654 | MS.gene050272:intron | 15.0% |
| !! | ATTTGTTTGAATTAAGATAA+TGG | - | chr7.1:52455572-52455591 | MS.gene050272:intron | 15.0% |
| !! | GCTAAATATTTAATTAACTT+CGG | + | chr7.1:52457168-52457187 | None:intergenic | 15.0% |
| !! | TCTTTAATAGTAGAAATAAA+GGG | - | chr7.1:52454989-52455008 | MS.gene050272:intron | 15.0% |
| !!! | AATAAATAAAGGTATATTAG+TGG | + | chr7.1:52458837-52458856 | None:intergenic | 15.0% |
| !!! | TTCTAAAATATCTTTCTTAA+CGG | - | chr7.1:52458610-52458629 | MS.gene050272:intron | 15.0% |
| !! | AACAATTCATAATATATGCA+AGG | - | chr7.1:52455051-52455070 | MS.gene050272:intron | 20.0% |
| !! | ACAAATTATTGCTTCATAAT+TGG | + | chr7.1:52456485-52456504 | None:intergenic | 20.0% |
| !! | AGAACTACTAAAAAAGAAAT+TGG | - | chr7.1:52459421-52459440 | MS.gene050272:CDS | 20.0% |
| !! | ATTAAGTACATCAATTGAAA+TGG | - | chr7.1:52458569-52458588 | MS.gene050272:intron | 20.0% |
| !! | CATGTTATTATTTGATAAAG+CGG | - | chr7.1:52457008-52457027 | MS.gene050272:intron | 20.0% |
| !! | CTTAAACAACACTTAATATA+AGG | - | chr7.1:52458985-52459004 | MS.gene050272:intron | 20.0% |
| !! | CTTTAATAGTAGAAATAAAG+GGG | - | chr7.1:52454990-52455009 | MS.gene050272:intron | 20.0% |
| !! | GAACTACTAAAAAAGAAATT+GGG | - | chr7.1:52459422-52459441 | MS.gene050272:CDS | 20.0% |
| !! | GTCTTTAATAGTAGAAATAA+AGG | - | chr7.1:52454988-52455007 | MS.gene050272:intron | 20.0% |
| !! | TAAAAAACCCTGAAAAATTA+GGG | + | chr7.1:52454933-52454952 | None:intergenic | 20.0% |
| !! | TTCTTTGTATTTCCATTTAT+CGG | - | chr7.1:52457725-52457744 | MS.gene050272:intron | 20.0% |
| !! | TTTAGAAAAGTTAGATAATG+AGG | + | chr7.1:52456289-52456308 | None:intergenic | 20.0% |
| !!! | AGTATTATTTTACTGACTTT+TGG | - | chr7.1:52456030-52456049 | MS.gene050272:CDS | 20.0% |
| !!! | ATTTTTTCCCTAATTTTTCA+GGG | - | chr7.1:52454923-52454942 | MS.gene050272:CDS | 20.0% |
| !!! | CTAAAAATCTCTTTTTTTGT+TGG | + | chr7.1:52455477-52455496 | None:intergenic | 20.0% |
| !!! | CTTATATTAAGTGTTGTTTA+AGG | + | chr7.1:52458987-52459006 | None:intergenic | 20.0% |
| !!! | GTGCTTAAATTTTGTTAAAA+AGG | - | chr7.1:52456097-52456116 | MS.gene050272:CDS | 20.0% |
| !!! | TCATTTCTATATGATTTTGT+AGG | - | chr7.1:52459124-52459143 | MS.gene050272:intron | 20.0% |
| !!! | TTGACTATATTTCTTTTAAC+AGG | - | chr7.1:52459095-52459114 | MS.gene050272:intron | 20.0% |
| !!! | TTGTTAAAAAGGTGTATAAA+AGG | - | chr7.1:52456108-52456127 | MS.gene050272:CDS | 20.0% |
| !!! | TTTAGATATAATTTGTGTTG+TGG | - | chr7.1:52455492-52455511 | MS.gene050272:intron | 20.0% |
| !!! | TTTTGTTTAGAAATTTTAGC+TGG | - | chr7.1:52457642-52457661 | MS.gene050272:intron | 20.0% |
| ! | AAATTGTCAGAAAAATAAGG+TGG | - | chr7.1:52457481-52457500 | MS.gene050272:intron | 25.0% |
| ! | AACACACTTCAAAATTATGT+AGG | + | chr7.1:52459045-52459064 | None:intergenic | 25.0% |
| ! | AAGCATTACTAGAATTTAGA+AGG | + | chr7.1:52457227-52457246 | None:intergenic | 25.0% |
| ! | ACTTGAGACACAATAAATAA+AGG | + | chr7.1:52458848-52458867 | None:intergenic | 25.0% |
| ! | ATAGAAATTAGTACACTCAA+TGG | - | chr7.1:52458939-52458958 | MS.gene050272:intron | 25.0% |
| ! | ATATAAGGACGTTTAATATG+AGG | - | chr7.1:52459000-52459019 | MS.gene050272:intron | 25.0% |
| ! | ATTATTAGACACAAGCAAAA+AGG | + | chr7.1:52455671-52455690 | None:intergenic | 25.0% |
| ! | ATTTCTATGAGTTCATATCT+TGG | - | chr7.1:52457839-52457858 | MS.gene050272:intron | 25.0% |
| ! | ATTTGCAAAAAATACACGAT+CGG | + | chr7.1:52457974-52457993 | None:intergenic | 25.0% |
| ! | CAATTGATGTACTTAATAGT+GGG | + | chr7.1:52458566-52458585 | None:intergenic | 25.0% |
| ! | CTAAAAAACCCTGAAAAATT+AGG | + | chr7.1:52454934-52454953 | None:intergenic | 25.0% |
| ! | TACCCTTTATTAATAGTACT+CGG | + | chr7.1:52458893-52458912 | None:intergenic | 25.0% |
| ! | TAGAAAGGAGTTTAATTGTT+GGG | - | chr7.1:52455602-52455621 | MS.gene050272:intron | 25.0% |
| ! | TCAATTGATGTACTTAATAG+TGG | + | chr7.1:52458567-52458586 | None:intergenic | 25.0% |
| ! | TCATTATGATCATTGAAAGA+TGG | - | chr7.1:52456856-52456875 | MS.gene050272:intron | 25.0% |
| ! | TTAGAAAGGAGTTTAATTGT+TGG | - | chr7.1:52455601-52455620 | MS.gene050272:intron | 25.0% |
| ! | TTTAACAGCATCAAATGTAA+TGG | + | chr7.1:52456449-52456468 | None:intergenic | 25.0% |
| ! | TTTCTATGAGTTCATATCTT+GGG | - | chr7.1:52457840-52457859 | MS.gene050272:intron | 25.0% |
| !! | ATAGTTTTTCTTCCGATAAA+TGG | + | chr7.1:52457740-52457759 | None:intergenic | 25.0% |
| !! | ATGAAATTGAAAGCTCTAAT+AGG | - | chr7.1:52457553-52457572 | MS.gene050272:intron | 25.0% |
| !! | GTAATTATATGTGTTGATGT+CGG | - | chr7.1:52455241-52455260 | MS.gene050272:intron | 25.0% |
| !! | TAGAAGTTGGTTAATATGTT+TGG | - | chr7.1:52457403-52457422 | MS.gene050272:intron | 25.0% |
| !! | TCACATTTAAAACTTGGAAA+AGG | + | chr7.1:52456600-52456619 | None:intergenic | 25.0% |
| !! | TTACCTTAAAGTCTTTTTGA+AGG | - | chr7.1:52456054-52456073 | MS.gene050272:CDS | 25.0% |
| !!! | ACTATTAATAAAGGGTACTT+TGG | - | chr7.1:52458896-52458915 | MS.gene050272:intron | 25.0% |
| !!! | AGTTATTTTAAGGTCAGTAA+TGG | - | chr7.1:52455926-52455945 | MS.gene050272:CDS | 25.0% |
| !!! | CATTTTTTCCCTAATTTTTC+AGG | - | chr7.1:52454922-52454941 | MS.gene050272:CDS | 25.0% |
| !!! | GTCTGTGTATAGTTATTTTA+AGG | - | chr7.1:52455916-52455935 | MS.gene050272:CDS | 25.0% |
| !!! | GTGAACTTTTTTAGAAAATC+AGG | - | chr7.1:52455833-52455852 | MS.gene050272:CDS | 25.0% |
| !!! | TTTCCAAGTTTTAAATGTGA+TGG | - | chr7.1:52456600-52456619 | MS.gene050272:intron | 25.0% |
| AAAAACTATAGTGCGGAAAA+AGG | - | chr7.1:52457751-52457770 | MS.gene050272:intron | 30.0% | |
| AATCAGTGTATGCAATTATC+AGG | - | chr7.1:52456625-52456644 | MS.gene050272:intron | 30.0% | |
| AATCAGTGTATGCAATTATG+GGG | - | chr7.1:52456536-52456555 | MS.gene050272:intron | 30.0% | |
| AATGAGTATTTGGATTGTAG+TGG | - | chr7.1:52454770-52454789 | MS.gene050272:CDS | 30.0% | |
| AATTCTGGATGTCATAAGAA+TGG | - | chr7.1:52457074-52457093 | MS.gene050272:intron | 30.0% | |
| ACAATCAGTGTATGCAATTA+TGG | - | chr7.1:52456534-52456553 | MS.gene050272:intron | 30.0% | |
| ACACCGAGTACTATTAATAA+AGG | - | chr7.1:52458887-52458906 | MS.gene050272:intron | 30.0% | |
| AGACTGTAGAAATTCTTTAG+TGG | + | chr7.1:52458301-52458320 | None:intergenic | 30.0% | |
| AGTACATCAATTGAAATGGT+TGG | - | chr7.1:52458573-52458592 | MS.gene050272:intron | 30.0% | |
| ATCATTGAAAGATGGTGATA+AGG | - | chr7.1:52456864-52456883 | MS.gene050272:intron | 30.0% | |
| CAATCAGTGTATGCAATTAT+GGG | - | chr7.1:52456535-52456554 | MS.gene050272:intron | 30.0% | |
| CACCGAGTACTATTAATAAA+GGG | - | chr7.1:52458888-52458907 | MS.gene050272:intron | 30.0% | |
| CATATAGTTATGATTACCTG+AGG | + | chr7.1:52454902-52454921 | None:intergenic | 30.0% | |
| CTACTAAAAAAGAAATTGGG+CGG | - | chr7.1:52459425-52459444 | MS.gene050272:CDS | 30.0% | |
| CTATCTGATGTATCAAAGAA+AGG | - | chr7.1:52459386-52459405 | MS.gene050272:CDS | 30.0% | |
| CTTTCTTTGATACATCAGAT+AGG | + | chr7.1:52459388-52459407 | None:intergenic | 30.0% | |
| GAAATACTTGTGATGAAACT+GGG | - | chr7.1:52458325-52458344 | MS.gene050272:intron | 30.0% | |
| GAAATTATCTTCTGTTCTGA+AGG | - | chr7.1:52457592-52457611 | MS.gene050272:intron | 30.0% | |
| GGGAAATTGTCAGAAAAATA+AGG | - | chr7.1:52457478-52457497 | MS.gene050272:intron | 30.0% | |
| GTAAAGTGTATGATGTTGAA+GGG | - | chr7.1:52454747-52454766 | MS.gene050272:CDS | 30.0% | |
| GTAATGCTTCGTATTGAATA+AGG | - | chr7.1:52457238-52457257 | MS.gene050272:intron | 30.0% | |
| GTCATCTCAATTTGACAAAA+AGG | + | chr7.1:52457298-52457317 | None:intergenic | 30.0% | |
| GTGTATAATCTCAAATGAAG+AGG | - | chr7.1:52456981-52457000 | MS.gene050272:intron | 30.0% | |
| GTTCCTTCAAAAAGACTTTA+AGG | + | chr7.1:52456060-52456079 | None:intergenic | 30.0% | |
| GTTGGTTAATATGTTTGGTA+AGG | - | chr7.1:52457408-52457427 | MS.gene050272:intron | 30.0% | |
| TAAAGTATAGGTAGTGAAGT+AGG | - | chr7.1:52457124-52457143 | MS.gene050272:intron | 30.0% | |
| TAACTTATGAAGCATGGATA+TGG | - | chr7.1:52455157-52455176 | MS.gene050272:intron | 30.0% | |
| TACTTCTCCATAATTTACAG+TGG | + | chr7.1:52457530-52457549 | None:intergenic | 30.0% | |
| TATAATCTCAAATGAAGAGG+TGG | - | chr7.1:52456984-52457003 | MS.gene050272:intron | 30.0% | |
| TATGTTTGGTAAGGATACTA+AGG | - | chr7.1:52457417-52457436 | MS.gene050272:intron | 30.0% | |
| TCCTGTTCTGTTATAATCAA+CGG | + | chr7.1:52459599-52459618 | None:intergenic | 30.0% | |
| TCTCCAAAATTAGAACAATG+AGG | + | chr7.1:52456570-52456589 | None:intergenic | 30.0% | |
| TGAAAAAGTGAGAATGTGAT+GGG | - | chr7.1:52455767-52455786 | MS.gene050272:intron | 30.0% | |
| TGATTCTCTCAAATCATTAG+CGG | + | chr7.1:52455210-52455229 | None:intergenic | 30.0% | |
| TGGAAATGATTGAATGTAAC+TGG | - | chr7.1:52455343-52455362 | MS.gene050272:intron | 30.0% | |
| TGTAAAACTTTAGTAGTGAG+AGG | - | chr7.1:52456358-52456377 | MS.gene050272:intron | 30.0% | |
| TGTAAAGTGTATGATGTTGA+AGG | - | chr7.1:52454746-52454765 | MS.gene050272:CDS | 30.0% | |
| TTAGCTAATCTTTCAAATGC+TGG | - | chr7.1:52457183-52457202 | MS.gene050272:intron | 30.0% | |
| TTCATAATATATGCAAGGTC+CGG | - | chr7.1:52455056-52455075 | MS.gene050272:intron | 30.0% | |
| TTGTTTCATGAAGGTTATTG+AGG | - | chr7.1:52457037-52457056 | MS.gene050272:intron | 30.0% | |
| ! | AATGTAATTTGCACTATGCT+CGG | + | chr7.1:52456394-52456413 | None:intergenic | 30.0% |
| ! | AATTTGTTTAGAACTGATGC+AGG | - | chr7.1:52457912-52457931 | MS.gene050272:intron | 30.0% |
| ! | AGACATTGAAGCATTTAATG+TGG | - | chr7.1:52456909-52456928 | MS.gene050272:intron | 30.0% |
| ! | ATAATTTGTGTTGTGGTGTT+TGG | - | chr7.1:52455499-52455518 | MS.gene050272:intron | 30.0% |
| ! | ATGATTTTGTAGGTTCAATG+TGG | - | chr7.1:52459134-52459153 | MS.gene050272:intron | 30.0% |
| ! | CCATTTTCTCAAAATGTTAC+CGG | + | chr7.1:52455326-52455345 | None:intergenic | 30.0% |
| ! | CTTTTAGCAATTGCTTTCAT+GGG | - | chr7.1:52458091-52458110 | MS.gene050272:intron | 30.0% |
| ! | GTTGTTGTTGTTGTTGAAAT+GGG | + | chr7.1:52454528-52454547 | None:intergenic | 30.0% |
| ! | TAATTTGTGTTGTGGTGTTT+GGG | - | chr7.1:52455500-52455519 | MS.gene050272:intron | 30.0% |
| ! | TGCTAGATTCTTTCTGTTTT+TGG | - | chr7.1:52454954-52454973 | MS.gene050272:CDS | 30.0% |
| ! | TGTCCATCACATTTAAAACT+TGG | + | chr7.1:52456606-52456625 | None:intergenic | 30.0% |
| ! | TGTTGTTGTTGTTGTTGAAA+TGG | + | chr7.1:52454529-52454548 | None:intergenic | 30.0% |
| ! | TTTGGCAAGTGTCATTATAT+CGG | + | chr7.1:52459210-52459229 | None:intergenic | 30.0% |
| !! | CTGATTCCTTCTAAAATTAG+GGG | + | chr7.1:52456720-52456739 | None:intergenic | 30.0% |
| !! | GACCTAAAATTAACTTGCAT+TGG | + | chr7.1:52457356-52457375 | None:intergenic | 30.0% |
| !! | GCTGATTCCTTCTAAAATTA+GGG | + | chr7.1:52456721-52456740 | None:intergenic | 30.0% |
| !! | TGTGTGTTTCTGATATTTTC+TGG | + | chr7.1:52458034-52458053 | None:intergenic | 30.0% |
| !!! | CGTGTATTTTTTGCAAATTC+TGG | - | chr7.1:52457976-52457995 | MS.gene050272:intron | 30.0% |
| AAACTCGCTTCTTTGTTCAT+TGG | - | chr7.1:52457378-52457397 | MS.gene050272:intron | 35.0% | |
| AAAGCTAAAAACTCAGTAGC+TGG | + | chr7.1:52458075-52458094 | None:intergenic | 35.0% | |
| AACTCGCTTCTTTGTTCATT+GGG | - | chr7.1:52457379-52457398 | MS.gene050272:intron | 35.0% | |
| AAGCAGATAAAAGACTTGAG+TGG | + | chr7.1:52458708-52458727 | None:intergenic | 35.0% | |
| AAGTTTCACTGTAGAGCAAA+CGG | + | chr7.1:52456256-52456275 | None:intergenic | 35.0% | |
| AATAGCTGCTTCATTTGCTT+CGG | + | chr7.1:52458004-52458023 | None:intergenic | 35.0% | |
| AGAGCAGCATTACAAATAAG+TGG | + | chr7.1:52459332-52459351 | None:intergenic | 35.0% | |
| AGGTAGATCAGGATTTCTTT+GGG | - | chr7.1:52459160-52459179 | MS.gene050272:intron | 35.0% | |
| AGGTATGCACTATCTAATCT+TGG | - | chr7.1:52458367-52458386 | MS.gene050272:intron | 35.0% | |
| AGTATTTGGATTGTAGTGGT+GGG | - | chr7.1:52454774-52454793 | MS.gene050272:CDS | 35.0% | |
| ATAAGTACCCACTATGTACT+TGG | + | chr7.1:52454690-52454709 | None:intergenic | 35.0% | |
| ATATTGATCTTCGAGAACTC+TGG | + | chr7.1:52456948-52456967 | None:intergenic | 35.0% | |
| ATCAGATAGGAAAGTAGGTT+TGG | + | chr7.1:52459375-52459394 | None:intergenic | 35.0% | |
| ATCCATGCTTCATAAGTTAC+CGG | + | chr7.1:52455156-52455175 | None:intergenic | 35.0% | |
| ATGGTACAAAGAAGATGGAA+GGG | - | chr7.1:52457457-52457476 | MS.gene050272:intron | 35.0% | |
| ATGTATAGAACTTTCTCCGT+TGG | + | chr7.1:52457322-52457341 | None:intergenic | 35.0% | |
| CACTATCTAATCTTGGTATC+CGG | - | chr7.1:52458374-52458393 | MS.gene050272:intron | 35.0% | |
| CATCCAAAACATGCAAAGTT+TGG | + | chr7.1:52459649-52459668 | None:intergenic | 35.0% | |
| CCAACACCAATACAAAATTG+AGG | + | chr7.1:52455372-52455391 | None:intergenic | 35.0% | |
| CGAAATACTTGTGATGAAAC+TGG | - | chr7.1:52458324-52458343 | MS.gene050272:intron | 35.0% | |
| CTAACAACAGCGTATACTTA+GGG | + | chr7.1:52456660-52456679 | None:intergenic | 35.0% | |
| CTGGAAAAGGTAATGTTGTT+AGG | - | chr7.1:52459564-52459583 | MS.gene050272:CDS | 35.0% | |
| GAAAAGAGAAAGAGAGGAAA+AGG | - | chr7.1:52455800-52455819 | MS.gene050272:CDS | 35.0% | |
| GAACCACAGAGATTCTTAAT+AGG | + | chr7.1:52457777-52457796 | None:intergenic | 35.0% | |
| GACACTTAATATGAGAACAG+AGG | + | chr7.1:52458742-52458761 | None:intergenic | 35.0% | |
| GACATTGTGTACTCATTTAC+TGG | + | chr7.1:52458413-52458432 | None:intergenic | 35.0% | |
| GATACATCAGATAGGAAAGT+AGG | + | chr7.1:52459380-52459399 | None:intergenic | 35.0% | |
| GCTATAAATTATGGTGACCA+TGG | - | chr7.1:52459287-52459306 | MS.gene050272:CDS | 35.0% | |
| GTCGCTTCTGCTATAAATTA+TGG | - | chr7.1:52459278-52459297 | MS.gene050272:CDS | 35.0% | |
| GTGAAAAAGTGAGAATGTGA+TGG | - | chr7.1:52455766-52455785 | MS.gene050272:intron | 35.0% | |
| TAAGGACGTTTAATATGAGG+TGG | - | chr7.1:52459003-52459022 | MS.gene050272:intron | 35.0% | |
| TAGAAGGGGAAAAGTGAAAA+TGG | - | chr7.1:52455742-52455761 | MS.gene050272:intron | 35.0% | |
| TAGGTAGATCAGGATTTCTT+TGG | - | chr7.1:52459159-52459178 | MS.gene050272:intron | 35.0% | |
| TATGGTACAAAGAAGATGGA+AGG | - | chr7.1:52457456-52457475 | MS.gene050272:intron | 35.0% | |
| TATTTATCACTCTCTTCCTC+AGG | - | chr7.1:52454883-52454902 | MS.gene050272:CDS | 35.0% | |
| TCATAATATATGCAAGGTCC+GGG | - | chr7.1:52455057-52455076 | MS.gene050272:intron | 35.0% | |
| TCGGAAGAAAAACTATAGTG+CGG | - | chr7.1:52457744-52457763 | MS.gene050272:intron | 35.0% | |
| TCTAACAACAGCGTATACTT+AGG | + | chr7.1:52456661-52456680 | None:intergenic | 35.0% | |
| TGACATTGACATGTATAGAC+CGG | - | chr7.1:52455134-52455153 | MS.gene050272:intron | 35.0% | |
| TGCATTTCCATACTCTACAA+AGG | + | chr7.1:52458193-52458212 | None:intergenic | 35.0% | |
| TGCTCCAACATCTACTTTAA+GGG | + | chr7.1:52454609-52454628 | None:intergenic | 35.0% | |
| TGTAGGAAAGAGAGATAGAA+GGG | - | chr7.1:52455727-52455746 | MS.gene050272:intron | 35.0% | |
| TGTATAGAACTTTCTCCGTT+GGG | + | chr7.1:52457321-52457340 | None:intergenic | 35.0% | |
| TGTCAGAAAAATAAGGTGGA+AGG | - | chr7.1:52457485-52457504 | MS.gene050272:intron | 35.0% | |
| TGTTCTGTTATAATCAACGG+TGG | + | chr7.1:52459596-52459615 | None:intergenic | 35.0% | |
| TGTTGAAGGGAATGAGTATT+TGG | - | chr7.1:52454760-52454779 | MS.gene050272:CDS | 35.0% | |
| TTAGCTGCCACTGTAAATTA+TGG | - | chr7.1:52457520-52457539 | MS.gene050272:intron | 35.0% | |
| TTCCATCTTCTTTGTACCAT+AGG | + | chr7.1:52457457-52457476 | None:intergenic | 35.0% | |
| TTGCTGAATTAACTCTACAG+CGG | + | chr7.1:52458220-52458239 | None:intergenic | 35.0% | |
| TTGTAGGTTCAATGTGGTTT+AGG | - | chr7.1:52459140-52459159 | MS.gene050272:intron | 35.0% | |
| ! | AACATCTACTTTAAGGGATG+CGG | + | chr7.1:52454603-52454622 | None:intergenic | 35.0% |
| ! | AAGCCAAACTTTGCATGTTT+TGG | - | chr7.1:52459643-52459662 | MS.gene050272:CDS | 35.0% |
| ! | ACCGTTGATTATAACAGAAC+AGG | - | chr7.1:52459595-52459614 | MS.gene050272:CDS | 35.0% |
| ! | ACTTGTTTAAAGTCAGAGTG+TGG | + | chr7.1:52456419-52456438 | None:intergenic | 35.0% |
| ! | AGAAACACACATGTACTGAT+GGG | - | chr7.1:52458043-52458062 | MS.gene050272:intron | 35.0% |
| ! | ATGAACAAAGAAGCGAGTTT+TGG | + | chr7.1:52457378-52457397 | None:intergenic | 35.0% |
| ! | ATGTAATTTGCACTATGCTC+GGG | + | chr7.1:52456393-52456412 | None:intergenic | 35.0% |
| ! | CGCCAATGCAAGTTAATTTT+AGG | - | chr7.1:52457351-52457370 | MS.gene050272:intron | 35.0% |
| ! | CTCAATCCCCTAATTTTAGA+AGG | - | chr7.1:52456711-52456730 | MS.gene050272:intron | 35.0% |
| ! | GATAATGGCTTGTCTTAGAA+AGG | - | chr7.1:52455587-52455606 | MS.gene050272:intron | 35.0% |
| ! | GCTTTTAGCAATTGCTTTCA+TGG | - | chr7.1:52458090-52458109 | MS.gene050272:intron | 35.0% |
| ! | GTGCCTCATTGTTCTAATTT+TGG | - | chr7.1:52456564-52456583 | MS.gene050272:intron | 35.0% |
| ! | GTTTTTGTAGAACCTATCCA+AGG | - | chr7.1:52458255-52458274 | MS.gene050272:intron | 35.0% |
| ! | TGGATGCCTCAATTTTGTAT+TGG | - | chr7.1:52455363-52455382 | MS.gene050272:intron | 35.0% |
| ! | TTGGCAAGTGTCATTATATC+GGG | + | chr7.1:52459209-52459228 | None:intergenic | 35.0% |
| ! | TTGTTCATTGGGTTAGAAGT+TGG | - | chr7.1:52457390-52457409 | MS.gene050272:intron | 35.0% |
| !! | AGTCTTTTTGAAGGAACGAA+CGG | - | chr7.1:52456063-52456082 | MS.gene050272:CDS | 35.0% |
| !! | CCGGTAACATTTTGAGAAAA+TGG | - | chr7.1:52455323-52455342 | MS.gene050272:intron | 35.0% |
| !! | CCTCAATTTTGTATTGGTGT+TGG | - | chr7.1:52455369-52455388 | MS.gene050272:intron | 35.0% |
| !! | GGCTGATTCCTTCTAAAATT+AGG | + | chr7.1:52456722-52456741 | None:intergenic | 35.0% |
| !! | GGTACTTTTTGATAGACCTA+TGG | - | chr7.1:52457438-52457457 | MS.gene050272:intron | 35.0% |
| !! | TTGTGTTGTTTGCAGAAATG+TGG | + | chr7.1:52454484-52454503 | None:intergenic | 35.0% |
| !!! | AATTCATCCCCTTTTTTTGG+TGG | + | chr7.1:52455099-52455118 | None:intergenic | 35.0% |
| !!! | GGTAATTCATCCCCTTTTTT+TGG | + | chr7.1:52455102-52455121 | None:intergenic | 35.0% |
| AAAGCTGTTGTTGATCAAGC+TGG | - | chr7.1:52454839-52454858 | MS.gene050272:CDS | 40.0% | |
| AAGCTGTTGTTGATCAAGCT+GGG | - | chr7.1:52454840-52454859 | MS.gene050272:CDS | 40.0% | |
| AAGGTCAGTAATGGTATGTG+TGG | - | chr7.1:52455935-52455954 | MS.gene050272:CDS | 40.0% | |
| AATGGTATGTGTGGTTGGAA+AGG | - | chr7.1:52455944-52455963 | MS.gene050272:CDS | 40.0% | |
| ACACTCATAGTGTTAGACAC+TGG | - | chr7.1:52455392-52455411 | MS.gene050272:intron | 40.0% | |
| AGATCTCTCACAACTCTAGT+GGG | - | chr7.1:52455698-52455717 | MS.gene050272:intron | 40.0% | |
| AGATTCATTGCAGGTACATG+TGG | - | chr7.1:52456764-52456783 | MS.gene050272:intron | 40.0% | |
| AGGCCTATTAAGAATCTCTG+TGG | - | chr7.1:52457771-52457790 | MS.gene050272:intron | 40.0% | |
| ATACGAGAAGGCCAGAATTT+CGG | + | chr7.1:52459538-52459557 | None:intergenic | 40.0% | |
| ATCGAGGGTAGTGAAGAATT+GGG | + | chr7.1:52454565-52454584 | None:intergenic | 40.0% | |
| ATGCTGTTAAAAGAGAGCCA+GGG | - | chr7.1:52456458-52456477 | MS.gene050272:intron | 40.0% | |
| ATGGTATGTGTGGTTGGAAA+GGG | - | chr7.1:52455945-52455964 | MS.gene050272:CDS | 40.0% | |
| ATTCCTCTTTAGTCAGCATC+TGG | - | chr7.1:52455979-52455998 | MS.gene050272:CDS | 40.0% | |
| ATTGAGCTCTACCGTCATAA+AGG | + | chr7.1:52456697-52456716 | None:intergenic | 40.0% | |
| ATTGCTTCATAATTGGACCC+TGG | + | chr7.1:52456478-52456497 | None:intergenic | 40.0% | |
| ATTGTGCTTGAGAAAGGGAA+AGG | - | chr7.1:52454722-52454741 | MS.gene050272:CDS | 40.0% | |
| CAATGTGGTTTAGGTAGATC+AGG | - | chr7.1:52459149-52459168 | MS.gene050272:intron | 40.0% | |
| CAGAAACACACATGTACTGA+TGG | - | chr7.1:52458042-52458061 | MS.gene050272:intron | 40.0% | |
| CAGGACTGTTCTATAAACTG+TGG | - | chr7.1:52455852-52455871 | MS.gene050272:CDS | 40.0% | |
| CAGTGTGAAGAAGACTAAAG+AGG | - | chr7.1:52454649-52454668 | MS.gene050272:CDS | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr7.1:52455058-52455077 | MS.gene050272:intron | 40.0% | |
| CGATGTCGATGGTAAAGTAT+AGG | - | chr7.1:52457112-52457131 | MS.gene050272:intron | 40.0% | |
| CTGTCTTCTACAATTGCGTT+TGG | + | chr7.1:52454632-52454651 | None:intergenic | 40.0% | |
| GAAGAAGCCAAGTACATAGT+GGG | - | chr7.1:52454680-52454699 | MS.gene050272:CDS | 40.0% | |
| GAAGCAGAGATAACAGAACT+TGG | + | chr7.1:52457704-52457723 | None:intergenic | 40.0% | |
| GAATCAGCCAATGTTAAGTG+TGG | - | chr7.1:52456733-52456752 | MS.gene050272:intron | 40.0% | |
| GACACTTCTTGTGTTTGATG+AGG | - | chr7.1:52458347-52458366 | MS.gene050272:intron | 40.0% | |
| GACCTATGGTACAAAGAAGA+TGG | - | chr7.1:52457452-52457471 | MS.gene050272:intron | 40.0% | |
| GACGTTTAATATGAGGTGGA+GGG | - | chr7.1:52459007-52459026 | MS.gene050272:intron | 40.0% | |
| GAGTATTTGGATTGTAGTGG+TGG | - | chr7.1:52454773-52454792 | MS.gene050272:CDS | 40.0% | |
| GCATCCCTTAAAGTAGATGT+TGG | - | chr7.1:52454602-52454621 | MS.gene050272:CDS | 40.0% | |
| GCTGTAGAGTTAATTCAGCA+AGG | - | chr7.1:52458219-52458238 | MS.gene050272:intron | 40.0% | |
| GGATGTCATAAGAATGGTTG+AGG | - | chr7.1:52457080-52457099 | MS.gene050272:intron | 40.0% | |
| GTAGGAAAGAGAGATAGAAG+GGG | - | chr7.1:52455728-52455747 | MS.gene050272:intron | 40.0% | |
| GTATAGAACTTTCTCCGTTG+GGG | + | chr7.1:52457320-52457339 | None:intergenic | 40.0% | |
| GTATGTGAAGCCCTTTATGA+CGG | - | chr7.1:52456683-52456702 | MS.gene050272:intron | 40.0% | |
| GTCATAAGAATGGTTGAGGA+AGG | - | chr7.1:52457084-52457103 | MS.gene050272:intron | 40.0% | |
| GTCTGCATCTGATTGAATTC+TGG | - | chr7.1:52457059-52457078 | MS.gene050272:intron | 40.0% | |
| GTGCTCCAACATCTACTTTA+AGG | + | chr7.1:52454610-52454629 | None:intergenic | 40.0% | |
| GTGGTAGAAAAGAGAAAGAG+AGG | - | chr7.1:52455794-52455813 | MS.gene050272:CDS | 40.0% | |
| GTGTAGGAAAGAGAGATAGA+AGG | - | chr7.1:52455726-52455745 | MS.gene050272:intron | 40.0% | |
| GTTGTTTGCAGAAATGTGGT+GGG | + | chr7.1:52454480-52454499 | None:intergenic | 40.0% | |
| GTTTGCTCTACAGTGAAACT+TGG | - | chr7.1:52456255-52456274 | MS.gene050272:intron | 40.0% | |
| TACTGGCATATGTGTACAAC+CGG | + | chr7.1:52458396-52458415 | None:intergenic | 40.0% | |
| TAGACTTGAGTGATCGAACA+TGG | - | chr7.1:52456165-52456184 | MS.gene050272:CDS | 40.0% | |
| TAGAGTTGTACATCCGCATA+TGG | - | chr7.1:52456790-52456809 | MS.gene050272:intron | 40.0% | |
| TATAGCAGAAGCGACTTTCT+CGG | + | chr7.1:52459273-52459292 | None:intergenic | 40.0% | |
| TCAAATTGAGATGACCCCAA+CGG | - | chr7.1:52457303-52457322 | MS.gene050272:intron | 40.0% | |
| TCAGTAATGGTATGTGTGGT+TGG | - | chr7.1:52455939-52455958 | MS.gene050272:CDS | 40.0% | |
| TGAAGAAGCCAAGTACATAG+TGG | - | chr7.1:52454679-52454698 | MS.gene050272:CDS | 40.0% | |
| TGATGCTCCACACTTAACAT+TGG | + | chr7.1:52456743-52456762 | None:intergenic | 40.0% | |
| TGGTACAAAGAAGATGGAAG+GGG | - | chr7.1:52457458-52457477 | MS.gene050272:intron | 40.0% | |
| TGTAGAGTATGGAAATGCAC+CGG | - | chr7.1:52458194-52458213 | MS.gene050272:intron | 40.0% | |
| TGTATATTCCTCCTTCTCCT+TGG | + | chr7.1:52458275-52458294 | None:intergenic | 40.0% | |
| TTCCCTTTCTCAAGCACAAT+CGG | + | chr7.1:52454722-52454741 | None:intergenic | 40.0% | |
| TTGAGCTCTACCGTCATAAA+GGG | + | chr7.1:52456696-52456715 | None:intergenic | 40.0% | |
| TTTGCGTATGTAACCAAAGC+AGG | - | chr7.1:52458472-52458491 | MS.gene050272:intron | 40.0% | |
| ! | AGGTAGTGAAGTAGGTGTTT+TGG | - | chr7.1:52457132-52457151 | MS.gene050272:intron | 40.0% |
| ! | ATGTTACCGGCTATAAAGCA+CGG | + | chr7.1:52455313-52455332 | None:intergenic | 40.0% |
| ! | GCATTTAATGTGGTTTGCAG+AGG | - | chr7.1:52456919-52456938 | MS.gene050272:intron | 40.0% |
| ! | TCAATGTCAGTTTCGAGTGT+CGG | + | chr7.1:52455123-52455142 | None:intergenic | 40.0% |
| ! | TGGCAAGTGTCATTATATCG+GGG | + | chr7.1:52459208-52459227 | None:intergenic | 40.0% |
| ! | TGTTGTTTGCAGAAATGTGG+TGG | + | chr7.1:52454481-52454500 | None:intergenic | 40.0% |
| !! | ACATAGTGGGTACTTATGCA+AGG | - | chr7.1:52454693-52454712 | MS.gene050272:CDS | 40.0% |
| !! | CATAGTGGGTACTTATGCAA+GGG | - | chr7.1:52454694-52454713 | MS.gene050272:CDS | 40.0% |
| !! | CGGACTGATTTGTTTCATGA+AGG | - | chr7.1:52457028-52457047 | MS.gene050272:intron | 40.0% |
| !! | GAAATGGGTGAGTTTGTTGT+TGG | + | chr7.1:52454513-52454532 | None:intergenic | 40.0% |
| !! | TCGAACATGGTTCTAACTGT+TGG | - | chr7.1:52456178-52456197 | MS.gene050272:CDS | 40.0% |
| AAACCGTGTCTCTGTTCACA+TGG | - | chr7.1:52456814-52456833 | MS.gene050272:intron | 45.0% | |
| AGGATTTCTTTGGGCTCATG+AGG | - | chr7.1:52459169-52459188 | MS.gene050272:intron | 45.0% | |
| ATTCCTCCTTCTCCTTGGAT+AGG | + | chr7.1:52458270-52458289 | None:intergenic | 45.0% | |
| CATCCATGTGAACAGAGACA+CGG | + | chr7.1:52456820-52456839 | None:intergenic | 45.0% | |
| CCAAAGCAGGCATACAACAA+AGG | - | chr7.1:52458485-52458504 | MS.gene050272:intron | 45.0% | |
| CCAGGCATAACAGGTTCAAA+AGG | + | chr7.1:52458165-52458184 | None:intergenic | 45.0% | |
| CGACATGTGAAAGAGATTCG+TGG | - | chr7.1:52459452-52459471 | MS.gene050272:CDS | 45.0% | |
| GACCGGTAACTTATGAAGCA+TGG | - | chr7.1:52455151-52455170 | MS.gene050272:intron | 45.0% | |
| GAGATCTCTCACAACTCTAG+TGG | - | chr7.1:52455697-52455716 | MS.gene050272:intron | 45.0% | |
| GAGCATCAGAGATTCATTGC+AGG | - | chr7.1:52456755-52456774 | MS.gene050272:intron | 45.0% | |
| GATCGAGGGTAGTGAAGAAT+TGG | + | chr7.1:52454566-52454585 | None:intergenic | 45.0% | |
| GATCTCTCACAACTCTAGTG+GGG | - | chr7.1:52455699-52455718 | MS.gene050272:intron | 45.0% | |
| GATGCTGTTAAAAGAGAGCC+AGG | - | chr7.1:52456457-52456476 | MS.gene050272:intron | 45.0% | |
| GCATGGATATGGACACTACA+CGG | - | chr7.1:52455168-52455187 | MS.gene050272:intron | 45.0% | |
| GCTGTTAATGCACTTGGTCA+TGG | - | chr7.1:52454800-52454819 | MS.gene050272:CDS | 45.0% | |
| GGACGTTTAATATGAGGTGG+AGG | - | chr7.1:52459006-52459025 | MS.gene050272:intron | 45.0% | |
| GGAGTGACCTTTGTAGAGTA+TGG | - | chr7.1:52458183-52458202 | MS.gene050272:intron | 45.0% | |
| GTAGAACCTATCCAAGGAGA+AGG | - | chr7.1:52458261-52458280 | MS.gene050272:intron | 45.0% | |
| GTAGATGCTTGCCGAAATTC+TGG | - | chr7.1:52459524-52459543 | MS.gene050272:CDS | 45.0% | |
| GTGAAAGAGATTCGTGGTGT+GGG | - | chr7.1:52459458-52459477 | MS.gene050272:CDS | 45.0% | |
| TACTCTACAAAGGTCACTCC+AGG | + | chr7.1:52458183-52458202 | None:intergenic | 45.0% | |
| TATAAAGCACGGACACTCCT+CGG | + | chr7.1:52455302-52455321 | None:intergenic | 45.0% | |
| TCGAGGGTAGTGAAGAATTG+GGG | + | chr7.1:52454564-52454583 | None:intergenic | 45.0% | |
| TGAAAGAGATTCGTGGTGTG+GGG | - | chr7.1:52459459-52459478 | MS.gene050272:CDS | 45.0% | |
| TGAATTAACTCTACAGCGGC+CGG | + | chr7.1:52458216-52458235 | None:intergenic | 45.0% | |
| TGTGAAAGAGATTCGTGGTG+TGG | - | chr7.1:52459457-52459476 | MS.gene050272:CDS | 45.0% | |
| TTCCAGCTGTCAATACGAGA+AGG | + | chr7.1:52459550-52459569 | None:intergenic | 45.0% | |
| TTGAGCTTAGCTCAGTTGGT+AGG | - | chr7.1:52455028-52455047 | MS.gene050272:intron | 45.0% | |
| TTGGTCATGGCGATGATGAT+TGG | - | chr7.1:52454813-52454832 | MS.gene050272:CDS | 45.0% | |
| TTTCGGCAAGCATCTACCAA+TGG | + | chr7.1:52459521-52459540 | None:intergenic | 45.0% | |
| ! | AATTTTCCCCTGTCCACATG+CGG | - | chr7.1:52457261-52457280 | MS.gene050272:intron | 45.0% |
| ! | ACACCAGATGCTGACTAAAG+AGG | + | chr7.1:52455985-52456004 | None:intergenic | 45.0% |
| ! | AGCATCTACCAATGGTGTTG+CGG | + | chr7.1:52459513-52459532 | None:intergenic | 45.0% |
| ! | CACCGATTGTGCTTGAGAAA+GGG | - | chr7.1:52454717-52454736 | MS.gene050272:CDS | 45.0% |
| ! | CCTTTGTTGTATGCCTGCTT+TGG | + | chr7.1:52458488-52458507 | None:intergenic | 45.0% |
| ! | CCTTTTGAACCTGTTATGCC+TGG | - | chr7.1:52458162-52458181 | MS.gene050272:intron | 45.0% |
| ! | CTCGTATTGACAGCTGGAAA+AGG | - | chr7.1:52459551-52459570 | MS.gene050272:CDS | 45.0% |
| ! | GGGATTGCTGTTAATGCACT+TGG | - | chr7.1:52454794-52454813 | MS.gene050272:CDS | 45.0% |
| ! | TCTACTTTAAGGGATGCGGT+TGG | + | chr7.1:52454599-52454618 | None:intergenic | 45.0% |
| !! | CACCTGCAAAAGTACTTCCA+TGG | + | chr7.1:52459307-52459326 | None:intergenic | 45.0% |
| !! | GGAAGGTATTTCGATGTCGA+TGG | - | chr7.1:52457101-52457120 | MS.gene050272:intron | 45.0% |
| !! | GGTGTTGATGCTAATCTGCA+AGG | - | chr7.1:52456000-52456019 | MS.gene050272:CDS | 45.0% |
| !! | TGAGAATGTGATGGGTCATG+TGG | - | chr7.1:52455775-52455794 | MS.gene050272:intron | 45.0% |
| !!! | CATGGAAGTACTTTTGCAGG+TGG | - | chr7.1:52459305-52459324 | MS.gene050272:CDS | 45.0% |
| !!! | GACCATGGAAGTACTTTTGC+AGG | - | chr7.1:52459302-52459321 | MS.gene050272:CDS | 45.0% |
| !!! | TCATCCCCTTTTTTTGGTGG+TGG | + | chr7.1:52455096-52455115 | None:intergenic | 45.0% |
| AAGCGACTTTCTCGGTTACG+AGG | + | chr7.1:52459265-52459284 | None:intergenic | 50.0% | |
| AAGGTCACTCCAGGCATAAC+AGG | + | chr7.1:52458174-52458193 | None:intergenic | 50.0% | |
| ACACTTGCCAAACCTCTTGC+TGG | - | chr7.1:52459218-52459237 | MS.gene050272:intron | 50.0% | |
| CCAACTGAGCTAAGCTCAAG+AGG | + | chr7.1:52455027-52455046 | None:intergenic | 50.0% | |
| CCTCTTGAGCTTAGCTCAGT+TGG | - | chr7.1:52455024-52455043 | MS.gene050272:intron | 50.0% | |
| CGTGGTGTGGGGCTAATTAT+AGG | - | chr7.1:52459470-52459489 | MS.gene050272:CDS | 50.0% | |
| CTCGGCCACCACCAAAAAAA+GGG | - | chr7.1:52455088-52455107 | MS.gene050272:intron | 50.0% | |
| GAACCTATCCAAGGAGAAGG+AGG | - | chr7.1:52458264-52458283 | MS.gene050272:intron | 50.0% | |
| GACTTTCTCGGTTACGAGGA+CGG | + | chr7.1:52459261-52459280 | None:intergenic | 50.0% | |
| GAGACACGGTTTGCCATATG+CGG | + | chr7.1:52456806-52456825 | None:intergenic | 50.0% | |
| GAGTGTCCGTGCTTTATAGC+CGG | - | chr7.1:52455304-52455323 | MS.gene050272:intron | 50.0% | |
| TCGGCCACCACCAAAAAAAG+GGG | - | chr7.1:52455089-52455108 | MS.gene050272:intron | 50.0% | |
| TGCTTTCATGGGAGAACCCT+GGG | - | chr7.1:52458102-52458121 | MS.gene050272:intron | 50.0% | |
| TGTCAAAGCAAGTGCACCCA+GGG | + | chr7.1:52458121-52458140 | None:intergenic | 50.0% | |
| TTGCTTTCATGGGAGAACCC+TGG | - | chr7.1:52458101-52458120 | MS.gene050272:intron | 50.0% | |
| TTGTCAAAGCAAGTGCACCC+AGG | + | chr7.1:52458122-52458141 | None:intergenic | 50.0% | |
| ! | ACTTTAAGGGATGCGGTTGG+TGG | + | chr7.1:52454596-52454615 | None:intergenic | 50.0% |
| ! | CTTTAAGGGATGCGGTTGGT+GGG | + | chr7.1:52454595-52454614 | None:intergenic | 50.0% |
| ! | CTTTGGGCTCATGAGGCTTT+TGG | - | chr7.1:52459176-52459195 | MS.gene050272:intron | 50.0% |
| ! | TGCTTTTCCGCATGTGGACA+GGG | + | chr7.1:52457271-52457290 | None:intergenic | 50.0% |
| !! | GCACCGATTGTGCTTGAGAA+AGG | - | chr7.1:52454716-52454735 | MS.gene050272:CDS | 50.0% |
| AAGGTCCGGGGTTCAAACCT+CGG | - | chr7.1:52455070-52455089 | MS.gene050272:intron | 55.0% | |
| ACTCTAGTGGGGAGTGGTGT+AGG | - | chr7.1:52455710-52455729 | MS.gene050272:intron | 55.0% | |
| AGACGTGTCCGCAACACCAT+TGG | - | chr7.1:52459502-52459521 | MS.gene050272:CDS | 55.0% | |
| ATAGGTAGGCCTCCAGCAAG+AGG | + | chr7.1:52459233-52459252 | None:intergenic | 55.0% | |
| CCTCGGCCACCACCAAAAAA+AGG | - | chr7.1:52455087-52455106 | MS.gene050272:intron | 55.0% | |
| CTCACAACTCTAGTGGGGAG+TGG | - | chr7.1:52455704-52455723 | MS.gene050272:intron | 55.0% | |
| CTTGCCAAACCTCTTGCTGG+AGG | - | chr7.1:52459221-52459240 | MS.gene050272:intron | 55.0% | |
| CTTGCTGGAGGCCTACCTAT+TGG | - | chr7.1:52459233-52459252 | MS.gene050272:intron | 55.0% | |
| GACTAGGCGTGTCTCGTTGT+CGG | + | chr7.1:52455280-52455299 | None:intergenic | 55.0% | |
| GTTACGAGGACGGCTCCAAT+AGG | + | chr7.1:52459251-52459270 | None:intergenic | 55.0% | |
| TAGGCCTCCAGCAAGAGGTT+TGG | + | chr7.1:52459228-52459247 | None:intergenic | 55.0% | |
| TTGGTGGGAGCAGTGATCGA+GGG | + | chr7.1:52454580-52454599 | None:intergenic | 55.0% | |
| ! | GCTTTTCCGCATGTGGACAG+GGG | + | chr7.1:52457270-52457289 | None:intergenic | 55.0% |
| ! | GGCCTTCTCGTATTGACAGC+TGG | - | chr7.1:52459545-52459564 | MS.gene050272:CDS | 55.0% |
| !! | CTGCTTTTCCGCATGTGGAC+AGG | + | chr7.1:52457272-52457291 | None:intergenic | 55.0% |
| !! | GGTGTCTGCTTTTCCGCATG+TGG | + | chr7.1:52457277-52457296 | None:intergenic | 55.0% |
| !!! | CCTTTTTTTGGTGGTGGCCG+AGG | + | chr7.1:52455090-52455109 | None:intergenic | 55.0% |
| AACGAGACACGCCTAGTCCG+AGG | - | chr7.1:52455282-52455301 | MS.gene050272:intron | 60.0% | |
| CGAGGACGGCTCCAATAGGT+AGG | + | chr7.1:52459247-52459266 | None:intergenic | 60.0% | |
| ! | GTTGGTGGGAGCAGTGATCG+AGG | + | chr7.1:52454581-52454600 | None:intergenic | 60.0% |
| GCACGGACACTCCTCGGACT+AGG | + | chr7.1:52455296-52455315 | None:intergenic | 65.0% | |
| GGTGGCCGAGGTTTGAACCC+CGG | + | chr7.1:52455078-52455097 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 52454470 | 52459679 | 52454470 | ID=MS.gene050272 |
| chr7.1 | mRNA | 52454470 | 52459679 | 52454470 | ID=MS.gene050272.t1;Parent=MS.gene050272 |
| chr7.1 | exon | 52459245 | 52459679 | 52459245 | ID=MS.gene050272.t1.exon1;Parent=MS.gene050272.t1 |
| chr7.1 | CDS | 52459245 | 52459679 | 52459245 | ID=cds.MS.gene050272.t1;Parent=MS.gene050272.t1 |
| chr7.1 | exon | 52455781 | 52456215 | 52455781 | ID=MS.gene050272.t1.exon2;Parent=MS.gene050272.t1 |
| chr7.1 | CDS | 52455781 | 52456215 | 52455781 | ID=cds.MS.gene050272.t1;Parent=MS.gene050272.t1 |
| chr7.1 | exon | 52454470 | 52455003 | 52454470 | ID=MS.gene050272.t1.exon3;Parent=MS.gene050272.t1 |
| chr7.1 | CDS | 52454470 | 52455003 | 52454470 | ID=cds.MS.gene050272.t1;Parent=MS.gene050272.t1 |
| Gene Sequence |
| Protein sequence |
