Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023764.t1 | AES98394.1 | 72 | 239 | 22 | 1 | 5 | 198 | 4 | 242 | 7.50E-89 | 336.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023764.t1 | Q9FMM4 | 36.1 | 72 | 45 | 1 | 123 | 194 | 611 | 681 | 1.1e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023764.t1 | G7KD92 | 72.0 | 239 | 22 | 1 | 5 | 198 | 4 | 242 | 5.4e-89 | 336.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79417 | MS.gene023764 | PPI |
| MS.gene93488 | MS.gene023764 | PPI |
| MS.gene017995 | MS.gene023764 | PPI |
| MS.gene94537 | MS.gene023764 | PPI |
| MS.gene93489 | MS.gene023764 | PPI |
| MS.gene015160 | MS.gene023764 | PPI |
| MS.gene010343 | MS.gene023764 | PPI |
| MS.gene94530 | MS.gene023764 | PPI |
| MS.gene055988 | MS.gene023764 | PPI |
| MS.gene017970 | MS.gene023764 | PPI |
| MS.gene28215 | MS.gene023764 | PPI |
| MS.gene041075 | MS.gene023764 | PPI |
| MS.gene97792 | MS.gene023764 | PPI |
| MS.gene79416 | MS.gene023764 | PPI |
| MS.gene28214 | MS.gene023764 | PPI |
| MS.gene94534 | MS.gene023764 | PPI |
| MS.gene28213 | MS.gene023764 | PPI |
| MS.gene94527 | MS.gene023764 | PPI |
| MS.gene94533 | MS.gene023764 | PPI |
| MS.gene94532 | MS.gene023764 | PPI |
| MS.gene93487 | MS.gene023764 | PPI |
| MS.gene047623 | MS.gene023764 | PPI |
| MS.gene52667 | MS.gene023764 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023764.t1 | MTR_5g068000 | 71.967 | 239 | 22 | 1 | 5 | 198 | 4 | 242 | 1.01e-114 | 327 |
| MS.gene023764.t1 | MTR_3g025940 | 42.667 | 75 | 41 | 2 | 125 | 198 | 375 | 448 | 7.02e-15 | 72.4 |
| MS.gene023764.t1 | MTR_5g016960 | 58.696 | 46 | 18 | 1 | 147 | 192 | 549 | 593 | 2.35e-13 | 68.2 |
| MS.gene023764.t1 | MTR_1g019200 | 38.356 | 73 | 43 | 2 | 123 | 194 | 634 | 705 | 1.11e-11 | 63.2 |
| MS.gene023764.t1 | MTR_5g016920 | 46.154 | 52 | 27 | 1 | 147 | 198 | 98 | 148 | 1.34e-11 | 60.5 |
| MS.gene023764.t1 | MTR_1g009680 | 54.762 | 42 | 18 | 1 | 149 | 190 | 428 | 468 | 2.74e-11 | 62.0 |
| MS.gene023764.t1 | MTR_5g078900 | 56.522 | 46 | 19 | 1 | 147 | 192 | 311 | 355 | 3.17e-11 | 61.6 |
| MS.gene023764.t1 | MTR_8g106240 | 41.538 | 65 | 35 | 2 | 131 | 193 | 286 | 349 | 3.50e-11 | 61.6 |
| MS.gene023764.t1 | MTR_5g079050 | 59.091 | 44 | 17 | 1 | 147 | 190 | 311 | 353 | 3.76e-11 | 61.6 |
| MS.gene023764.t1 | MTR_5g016980 | 56.522 | 46 | 17 | 2 | 147 | 190 | 284 | 328 | 6.92e-11 | 60.5 |
| MS.gene023764.t1 | MTR_5g016940 | 52.174 | 46 | 21 | 1 | 147 | 192 | 297 | 341 | 7.86e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023764.t1 | AT5G42940 | 36.111 | 72 | 45 | 1 | 123 | 194 | 611 | 681 | 8.52e-13 | 66.6 |
| MS.gene023764.t1 | AT5G42940 | 36.111 | 72 | 45 | 1 | 123 | 194 | 611 | 681 | 8.52e-13 | 66.6 |
| MS.gene023764.t1 | AT3G15070 | 48.276 | 58 | 29 | 1 | 133 | 190 | 412 | 468 | 1.99e-12 | 65.5 |
| MS.gene023764.t1 | AT3G15070 | 48.276 | 58 | 29 | 1 | 133 | 190 | 412 | 468 | 1.99e-12 | 65.5 |
| MS.gene023764.t1 | AT4G34040 | 42.553 | 47 | 26 | 1 | 144 | 190 | 614 | 659 | 2.62e-11 | 62.4 |
| MS.gene023764.t1 | AT2G15530 | 44.681 | 47 | 25 | 1 | 144 | 190 | 651 | 696 | 5.31e-11 | 61.2 |
| MS.gene023764.t1 | AT2G15530 | 44.681 | 47 | 25 | 1 | 144 | 190 | 651 | 696 | 5.31e-11 | 61.2 |
| MS.gene023764.t1 | AT2G15530 | 44.681 | 47 | 25 | 1 | 144 | 190 | 651 | 696 | 5.31e-11 | 61.2 |
| MS.gene023764.t1 | AT2G15530 | 44.681 | 47 | 25 | 1 | 144 | 190 | 651 | 696 | 5.31e-11 | 61.2 |
| MS.gene023764.t1 | AT2G15530 | 44.681 | 47 | 25 | 1 | 144 | 190 | 651 | 696 | 5.31e-11 | 61.2 |
| MS.gene023764.t1 | AT2G15530 | 44.681 | 47 | 25 | 1 | 144 | 190 | 629 | 674 | 5.74e-11 | 61.2 |
| MS.gene023764.t1 | AT5G67120 | 46.154 | 52 | 27 | 1 | 142 | 193 | 220 | 270 | 9.54e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTGAGAATCTTGAATT+TGG | 0.134776 | 5.4:-53129349 | MS.gene023764:CDS |
| TATGCCCACTTTGCAATAAA+AGG | 0.201253 | 5.4:-53129041 | MS.gene023764:CDS |
| AAATATACCTGCGACCTTAA+AGG | 0.219184 | 5.4:+53130278 | None:intergenic |
| AAAGCTCCAATCAACCTTTA+AGG | 0.240288 | 5.4:-53130292 | MS.gene023764:CDS |
| TCCATTGTTTCTCTCACTTT+AGG | 0.294080 | 5.4:+53130584 | None:intergenic |
| AAGATTCTCACGACGAATAT+TGG | 0.334926 | 5.4:+53129357 | None:intergenic |
| TTTGACGTCCCCAAGCAATT+TGG | 0.345197 | 5.4:+53130312 | None:intergenic |
| GAGAGAAACAATGGAGTATA+TGG | 0.346210 | 5.4:-53130576 | MS.gene023764:intron |
| GTCGTGAGAATCTTGAATTT+GGG | 0.369527 | 5.4:-53129348 | MS.gene023764:CDS |
| GAACAACATGTAACAACTAA+TGG | 0.374001 | 5.4:-53130641 | MS.gene023764:CDS |
| CTGCGACCTTAAAGGTTGAT+TGG | 0.396566 | 5.4:+53130286 | None:intergenic |
| GTTTCTCTCACTTTAGGATC+AGG | 0.407404 | 5.4:+53130590 | None:intergenic |
| ATTATAGGTCCAAATTGCTT+GGG | 0.412553 | 5.4:-53130321 | MS.gene023764:intron |
| GGATCATCTTCAAATAGCTC+TGG | 0.423511 | 5.4:+53130770 | None:intergenic |
| TATTATAGGTCCAAATTGCT+TGG | 0.426107 | 5.4:-53130322 | MS.gene023764:intron |
| TGTTCAACAATCTGACCAAC+TGG | 0.432365 | 5.4:+53130659 | None:intergenic |
| ACAATCATGCTGCATTTGTC+TGG | 0.461362 | 5.4:-53129305 | MS.gene023764:intron |
| ATGCCCACTTTGCAATAAAA+GGG | 0.469728 | 5.4:-53129040 | MS.gene023764:CDS |
| TTTACAACAATGAACACTAA+AGG | 0.485501 | 5.4:-53131223 | None:intergenic |
| ACATGAGTTGCATTAAAGAC+TGG | 0.489249 | 5.4:-53129083 | MS.gene023764:CDS |
| AATAGCTCTGGGTACATAGC+TGG | 0.501323 | 5.4:+53130782 | None:intergenic |
| TAGCTGGTAGGTGCCTACTT+TGG | 0.505697 | 5.4:+53130798 | None:intergenic |
| CTTCAAGCAACTTCCAAAGT+AGG | 0.505986 | 5.4:-53130811 | MS.gene023764:CDS |
| TCACGTAGATATTGAAAGAC+TGG | 0.509822 | 5.4:+53130749 | None:intergenic |
| CTTCTACATTGCGTATCCAC+CGG | 0.512860 | 5.4:+53129389 | None:intergenic |
| CAATCAACCTTTAAGGTCGC+AGG | 0.515350 | 5.4:-53130285 | MS.gene023764:intron |
| GATCATCTTCAAATAGCTCT+GGG | 0.557026 | 5.4:+53130771 | None:intergenic |
| GGATGCAGAAGCTTACCAAC+CGG | 0.573678 | 5.4:-53129408 | MS.gene023764:intron |
| GAAACTACTAAGATTCCAGT+TGG | 0.589740 | 5.4:-53130674 | MS.gene023764:CDS |
| TACATTGCGTATCCACCGGT+TGG | 0.594807 | 5.4:+53129393 | None:intergenic |
| GGCATACATTCTTAACAGCT+AGG | 0.595469 | 5.4:+53129058 | None:intergenic |
| TCCTAAAGTGAGAGAAACAA+TGG | 0.600914 | 5.4:-53130585 | MS.gene023764:CDS |
| TCGTGAGAATCTTGAATTTG+GGG | 0.614713 | 5.4:-53129347 | MS.gene023764:CDS |
| TTATAGGTCCAAATTGCTTG+GGG | 0.620684 | 5.4:-53130320 | MS.gene023764:intron |
| TGCAGAAGCTTACCAACCGG+TGG | 0.631045 | 5.4:-53129405 | MS.gene023764:intron |
| GCTCTGGGTACATAGCTGGT+AGG | 0.632647 | 5.4:+53130786 | None:intergenic |
| ATGTCTCTAGGTCAAACTGA+AGG | 0.638904 | 5.4:-53130842 | MS.gene023764:intron |
| TGCCCACTTTGCAATAAAAG+GGG | 0.645635 | 5.4:-53129039 | MS.gene023764:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTATAATTCTAAATTT+CGG | + | chr5.4:53129295-53129314 | None:intergenic | 10.0% |
| !! | TTATACTACAACTATTAATT+AGG | + | chr5.4:53129790-53129809 | None:intergenic | 15.0% |
| !!! | CATATTTCTATAAACATTTT+AGG | - | chr5.4:53130314-53130333 | MS.gene023764:CDS | 15.0% |
| !!! | TATGTTTGATTTACTAATTA+GGG | - | chr5.4:53129826-53129845 | MS.gene023764:intron | 15.0% |
| !!! | TTATGTTTGATTTACTAATT+AGG | - | chr5.4:53129825-53129844 | MS.gene023764:intron | 15.0% |
| !! | ATAGTTGTAGTATAAGAAAA+AGG | - | chr5.4:53129795-53129814 | MS.gene023764:intron | 20.0% |
| !! | CATATTATATATCACATGAT+TGG | + | chr5.4:53129327-53129346 | None:intergenic | 20.0% |
| !! | CCAAAATTTCTCTTATAAAT+AGG | + | chr5.4:53130031-53130050 | None:intergenic | 20.0% |
| !! | CCTATTTATAAAAGAAAGTT+AGG | + | chr5.4:53130113-53130132 | None:intergenic | 20.0% |
| !! | GAAGAATTCAATTAAAATCA+AGG | + | chr5.4:53130779-53130798 | None:intergenic | 20.0% |
| !! | TATATGAATTCTCATGTATA+AGG | + | chr5.4:53130388-53130407 | None:intergenic | 20.0% |
| !! | TCAACTTCTAATCAATTATT+TGG | - | chr5.4:53130488-53130507 | MS.gene023764:intron | 20.0% |
| !! | TCTAATCAATTATTTGGTAT+TGG | - | chr5.4:53130494-53130513 | MS.gene023764:intron | 20.0% |
| !!! | AATCTTCTAAAGTAAATTCA+TGG | - | chr5.4:53129708-53129727 | MS.gene023764:intron | 20.0% |
| !!! | ATCTTCTAAAGTAAATTCAT+GGG | - | chr5.4:53129709-53129728 | MS.gene023764:intron | 20.0% |
| !!! | CCTAACTTTCTTTTATAAAT+AGG | - | chr5.4:53130110-53130129 | MS.gene023764:intron | 20.0% |
| !!! | CCTATTTATAAGAGAAATTT+TGG | - | chr5.4:53130028-53130047 | MS.gene023764:intron | 20.0% |
| !!! | TAATTAGGTTTTTTAACGTT+AGG | - | chr5.4:53130955-53130974 | MS.gene023764:intron | 20.0% |
| !!! | TAGTTTTTTTTTTTGACAAG+CGG | + | chr5.4:53129235-53129254 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTACAGCCAA+AGG | + | chr5.4:53129364-53129383 | None:intergenic | 20.0% |
| ! | AACAAATTTGATGTAATGTC+AGG | - | chr5.4:53131077-53131096 | MS.gene023764:intron | 25.0% |
| ! | AATAAAAATATATACAGCCG+CGG | - | chr5.4:53130805-53130824 | MS.gene023764:CDS | 25.0% |
| ! | ACATGAGAATTCATATACAT+AGG | - | chr5.4:53130391-53130410 | MS.gene023764:intron | 25.0% |
| ! | ATAATTTGATTGCTGAAGAT+GGG | + | chr5.4:53130618-53130637 | None:intergenic | 25.0% |
| ! | GCATGTATTTATTTGAATCT+TGG | - | chr5.4:53129744-53129763 | MS.gene023764:intron | 25.0% |
| ! | GTAGTATAAGAAAAAGGAAT+TGG | - | chr5.4:53129801-53129820 | MS.gene023764:intron | 25.0% |
| ! | TTACTAAAAGATCTCTACAA+TGG | + | chr5.4:53129188-53129207 | None:intergenic | 25.0% |
| !! | AAAGTTTGACTCTTGTTTAA+TGG | - | chr5.4:53129858-53129877 | MS.gene023764:intron | 25.0% |
| !! | AAGTTTGACTCTTGTTTAAT+GGG | - | chr5.4:53129859-53129878 | MS.gene023764:intron | 25.0% |
| !! | CTTTCTTTTATAAATAGGAC+CGG | - | chr5.4:53130115-53130134 | MS.gene023764:intron | 25.0% |
| !! | TACTTTATAGCTTGTAAGTA+TGG | + | chr5.4:53130205-53130224 | None:intergenic | 25.0% |
| !! | TTTCTTTTATAAATAGGACC+GGG | - | chr5.4:53130116-53130135 | MS.gene023764:intron | 25.0% |
| !!! | AATTCATGGGAATTTGTTTT+TGG | - | chr5.4:53129722-53129741 | MS.gene023764:intron | 25.0% |
| !!! | ATATTTTGGGTCATGTAATT+AGG | - | chr5.4:53129063-53129082 | MS.gene023764:CDS | 25.0% |
| AAAAACACTATGATGTCTCT+AGG | - | chr5.4:53129383-53129402 | MS.gene023764:CDS | 30.0% | |
| AAATTATCATGCTCAAAACG+AGG | - | chr5.4:53130631-53130650 | MS.gene023764:CDS | 30.0% | |
| ATCTACGTGAGACTAAAAAA+AGG | - | chr5.4:53129501-53129520 | MS.gene023764:intron | 30.0% | |
| ATTATAGGTCCAAATTGCTT+GGG | - | chr5.4:53129916-53129935 | MS.gene023764:intron | 30.0% | |
| GAACAACATGTAACAACTAA+TGG | - | chr5.4:53129596-53129615 | MS.gene023764:intron | 30.0% | |
| GACTAGAGAAAACTACAATT+TGG | + | chr5.4:53130467-53130486 | None:intergenic | 30.0% | |
| GATAATTTGATTGCTGAAGA+TGG | + | chr5.4:53130619-53130638 | None:intergenic | 30.0% | |
| TAATTTGATTGCTGAAGATG+GGG | + | chr5.4:53130617-53130636 | None:intergenic | 30.0% | |
| TATTATAGGTCCAAATTGCT+TGG | - | chr5.4:53129915-53129934 | MS.gene023764:intron | 30.0% | |
| TCTACGTGAGACTAAAAAAA+GGG | - | chr5.4:53129502-53129521 | MS.gene023764:intron | 30.0% | |
| TTTATATGATATACTCCCTC+TGG | - | chr5.4:53130004-53130023 | MS.gene023764:intron | 30.0% | |
| ! | ACGAAAGAGAGTATATAGAA+TGG | + | chr5.4:53131028-53131047 | None:intergenic | 30.0% |
| ! | CGAAAGAGAGTATATAGAAT+GGG | + | chr5.4:53131027-53131046 | None:intergenic | 30.0% |
| ! | TTCTTTTATAAATAGGACCG+GGG | - | chr5.4:53130117-53130136 | MS.gene023764:intron | 30.0% |
| !!! | CACTAGTTTTCGTGTATTAT+AGG | - | chr5.4:53129901-53129920 | MS.gene023764:intron | 30.0% |
| AAAGCTCCAATCAACCTTTA+AGG | - | chr5.4:53129945-53129964 | MS.gene023764:intron | 35.0% | |
| AAATATACCTGCGACCTTAA+AGG | + | chr5.4:53129962-53129981 | None:intergenic | 35.0% | |
| AAGATTCTCACGACGAATAT+TGG | + | chr5.4:53130883-53130902 | None:intergenic | 35.0% | |
| ACATGAGTTGCATTAAAGAC+TGG | - | chr5.4:53131154-53131173 | MS.gene023764:intron | 35.0% | |
| ATGCCCACTTTGCAATAAAA+GGG | - | chr5.4:53131197-53131216 | MS.gene023764:intron | 35.0% | |
| CTCTTATAAATAGGACCAGA+GGG | + | chr5.4:53130022-53130041 | None:intergenic | 35.0% | |
| CTTGTAAGTATGGATCTCTT+AGG | + | chr5.4:53130195-53130214 | None:intergenic | 35.0% | |
| GAAACTACTAAGATTCCAGT+TGG | - | chr5.4:53129563-53129582 | MS.gene023764:intron | 35.0% | |
| GAGAGAAACAATGGAGTATA+TGG | - | chr5.4:53129661-53129680 | MS.gene023764:intron | 35.0% | |
| GATCATCTTCAAATAGCTCT+GGG | + | chr5.4:53129469-53129488 | None:intergenic | 35.0% | |
| GGGTCATGTAATTAGGTTTA+TGG | - | chr5.4:53129070-53129089 | MS.gene023764:CDS | 35.0% | |
| GTCGTGAGAATCTTGAATTT+GGG | - | chr5.4:53130889-53130908 | MS.gene023764:intron | 35.0% | |
| TATGCCCACTTTGCAATAAA+AGG | - | chr5.4:53131196-53131215 | MS.gene023764:intron | 35.0% | |
| TCAATAATATATACTCCCCC+CGG | + | chr5.4:53130137-53130156 | None:intergenic | 35.0% | |
| TCACGTAGATATTGAAAGAC+TGG | + | chr5.4:53129491-53129510 | None:intergenic | 35.0% | |
| TCCTAAAGTGAGAGAAACAA+TGG | - | chr5.4:53129652-53129671 | MS.gene023764:intron | 35.0% | |
| TCGTGAGAATCTTGAATTTG+GGG | - | chr5.4:53130890-53130909 | MS.gene023764:intron | 35.0% | |
| TCTCTACAATGGCATTGTAA+CGG | + | chr5.4:53129177-53129196 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGACCAG+AGG | + | chr5.4:53130023-53130042 | None:intergenic | 35.0% | |
| TGCTTGCATTGTTAATCCTT+TGG | - | chr5.4:53129345-53129364 | MS.gene023764:CDS | 35.0% | |
| TTATAGGTCCAAATTGCTTG+GGG | - | chr5.4:53129917-53129936 | MS.gene023764:intron | 35.0% | |
| ! | ATCCCCTTTTATTGCAAAGT+GGG | + | chr5.4:53131203-53131222 | None:intergenic | 35.0% |
| ! | CAGCATGATTGTGTATTTTC+GGG | + | chr5.4:53130924-53130943 | None:intergenic | 35.0% |
| ! | GCAGCATGATTGTGTATTTT+CGG | + | chr5.4:53130925-53130944 | None:intergenic | 35.0% |
| ! | TATCCCCTTTTATTGCAAAG+TGG | + | chr5.4:53131204-53131223 | None:intergenic | 35.0% |
| ! | TCCATTGTTTCTCTCACTTT+AGG | + | chr5.4:53129656-53129675 | None:intergenic | 35.0% |
| ! | TCTTTTATAAATAGGACCGG+GGG | - | chr5.4:53130118-53130137 | MS.gene023764:intron | 35.0% |
| AAAAATATATACAGCCGCGG+TGG | - | chr5.4:53130808-53130827 | MS.gene023764:CDS | 40.0% | |
| ACAATCATGCTGCATTTGTC+TGG | - | chr5.4:53130932-53130951 | MS.gene023764:intron | 40.0% | |
| ATGTCTCTAGGTCAAACTGA+AGG | - | chr5.4:53129395-53129414 | MS.gene023764:CDS | 40.0% | |
| CATCTTCCACAACCGATTAA+TGG | - | chr5.4:53130572-53130591 | MS.gene023764:intron | 40.0% | |
| CATTAATCGGTTGTGGAAGA+TGG | + | chr5.4:53130574-53130593 | None:intergenic | 40.0% | |
| CGTCGTGAGAATCTTGAATT+TGG | - | chr5.4:53130888-53130907 | MS.gene023764:intron | 40.0% | |
| CTTCAAGCAACTTCCAAAGT+AGG | - | chr5.4:53129426-53129445 | MS.gene023764:intron | 40.0% | |
| GCTGCATTTGTCTGGTAATT+AGG | - | chr5.4:53130940-53130959 | MS.gene023764:intron | 40.0% | |
| GGATCATCTTCAAATAGCTC+TGG | + | chr5.4:53129470-53129489 | None:intergenic | 40.0% | |
| GGCATACATTCTTAACAGCT+AGG | + | chr5.4:53131182-53131201 | None:intergenic | 40.0% | |
| TGCCCACTTTGCAATAAAAG+GGG | - | chr5.4:53131198-53131217 | MS.gene023764:intron | 40.0% | |
| TGTTCAACAATCTGACCAAC+TGG | + | chr5.4:53129581-53129600 | None:intergenic | 40.0% | |
| TTTGGACCATTAATCGGTTG+TGG | + | chr5.4:53130581-53130600 | None:intergenic | 40.0% | |
| ! | CTTTTATAAATAGGACCGGG+GGG | - | chr5.4:53130119-53130138 | MS.gene023764:intron | 40.0% |
| ! | TATTGGCCAACGAGTTTTTC+AGG | - | chr5.4:53130511-53130530 | MS.gene023764:intron | 40.0% |
| ! | TGTCAGGAAAATTTTGCTGC+TGG | - | chr5.4:53131093-53131112 | MS.gene023764:intron | 40.0% |
| !! | GGTTGGTTTGGACCATTAAT+CGG | + | chr5.4:53130587-53130606 | None:intergenic | 40.0% |
| !! | GTTTCTCTCACTTTAGGATC+AGG | + | chr5.4:53129650-53129669 | None:intergenic | 40.0% |
| CTTCTACATTGCGTATCCAC+CGG | + | chr5.4:53130851-53130870 | None:intergenic | 45.0% | |
| TCCGATCCTGAAAAACTCGT+TGG | + | chr5.4:53130520-53130539 | None:intergenic | 45.0% | |
| TTTGACGTCCCCAAGCAATT+TGG | + | chr5.4:53129928-53129947 | None:intergenic | 45.0% | |
| ! | CTGCGACCTTAAAGGTTGAT+TGG | + | chr5.4:53129954-53129973 | None:intergenic | 45.0% |
| !! | AATAGCTCTGGGTACATAGC+TGG | + | chr5.4:53129458-53129477 | None:intergenic | 45.0% |
| !! | CAATCAACCTTTAAGGTCGC+AGG | - | chr5.4:53129952-53129971 | MS.gene023764:intron | 45.0% |
| !!! | ACGAGTTTTTCAGGATCGGA+CGG | - | chr5.4:53130520-53130539 | MS.gene023764:intron | 45.0% |
| !!! | GCCAACGAGTTTTTCAGGAT+CGG | - | chr5.4:53130516-53130535 | MS.gene023764:intron | 45.0% |
| !!! | TTTTTTAATTGTAATATTTT+GGG | - | chr5.4:53129050-53129069 | MS.gene023764:CDS | 5.0% |
| !!! | TTTTTTTAATTGTAATATTT+TGG | - | chr5.4:53129049-53129068 | MS.gene023764:CDS | 5.0% |
| GAAGATGGGGTAACACTGGT+TGG | + | chr5.4:53130604-53130623 | None:intergenic | 50.0% | |
| GGATGCAGAAGCTTACCAAC+CGG | - | chr5.4:53130829-53130848 | MS.gene023764:CDS | 50.0% | |
| TACATTGCGTATCCACCGGT+TGG | + | chr5.4:53130847-53130866 | None:intergenic | 50.0% | |
| TAGCTGGTAGGTGCCTACTT+TGG | + | chr5.4:53129442-53129461 | None:intergenic | 50.0% | |
| TGCTGAAGATGGGGTAACAC+TGG | + | chr5.4:53130608-53130627 | None:intergenic | 50.0% | |
| ! | TGGGGTAACACTGGTTGGTT+TGG | + | chr5.4:53130599-53130618 | None:intergenic | 50.0% |
| GTAAGCTTCTGCATCCACCG+CGG | + | chr5.4:53130825-53130844 | None:intergenic | 55.0% | |
| TGCAGAAGCTTACCAACCGG+TGG | - | chr5.4:53130832-53130851 | MS.gene023764:CDS | 55.0% | |
| ! | GCTCTGGGTACATAGCTGGT+AGG | + | chr5.4:53129454-53129473 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 53129023 | 53131236 | 53129023 | ID=MS.gene023764 |
| chr5.4 | mRNA | 53129023 | 53131236 | 53129023 | ID=MS.gene023764.t1;Parent=MS.gene023764 |
| chr5.4 | exon | 53131224 | 53131236 | 53131224 | ID=MS.gene023764.t1.exon1;Parent=MS.gene023764.t1 |
| chr5.4 | CDS | 53131224 | 53131236 | 53131224 | ID=cds.MS.gene023764.t1;Parent=MS.gene023764.t1 |
| chr5.4 | exon | 53130577 | 53130854 | 53130577 | ID=MS.gene023764.t1.exon2;Parent=MS.gene023764.t1 |
| chr5.4 | CDS | 53130577 | 53130854 | 53130577 | ID=cds.MS.gene023764.t1;Parent=MS.gene023764.t1 |
| chr5.4 | exon | 53130286 | 53130336 | 53130286 | ID=MS.gene023764.t1.exon3;Parent=MS.gene023764.t1 |
| chr5.4 | CDS | 53130286 | 53130336 | 53130286 | ID=cds.MS.gene023764.t1;Parent=MS.gene023764.t1 |
| chr5.4 | exon | 53129306 | 53129422 | 53129306 | ID=MS.gene023764.t1.exon4;Parent=MS.gene023764.t1 |
| chr5.4 | CDS | 53129306 | 53129422 | 53129306 | ID=cds.MS.gene023764.t1;Parent=MS.gene023764.t1 |
| chr5.4 | exon | 53129023 | 53129160 | 53129023 | ID=MS.gene023764.t1.exon5;Parent=MS.gene023764.t1 |
| chr5.4 | CDS | 53129023 | 53129160 | 53129023 | ID=cds.MS.gene023764.t1;Parent=MS.gene023764.t1 |
| Gene Sequence |
| Protein sequence |
