Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42280.t1 | XP_013462196.1 | 96.4 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.00E+00 | 1094 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42280.t1 | Q9FYG4 | 45.9 | 529 | 271 | 12 | 33 | 555 | 96 | 615 | 8.3e-126 | 452.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42280.t1 | A0A072V3I4 | 96.4 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.0e+00 | 1094.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42280 | MS.gene037665 | PPI |
| MS.gene048092 | MS.gene42280 | PPI |
| MS.gene42280 | MS.gene73248 | PPI |
| MS.gene024604 | MS.gene42280 | PPI |
| MS.gene42280 | MS.gene050500 | PPI |
| MS.gene42280 | MS.gene92577 | PPI |
| MS.gene22907 | MS.gene42280 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42280.t1 | MTR_3g113210 | 96.396 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1106 |
| MS.gene42280.t1 | MTR_1g023570 | 70.321 | 529 | 145 | 6 | 29 | 555 | 25 | 543 | 0.0 | 785 |
| MS.gene42280.t1 | MTR_6g004960 | 65.067 | 521 | 175 | 4 | 37 | 555 | 1 | 516 | 0.0 | 730 |
| MS.gene42280.t1 | MTR_7g114530 | 57.439 | 531 | 209 | 8 | 33 | 555 | 49 | 570 | 0.0 | 598 |
| MS.gene42280.t1 | MTR_5g038410 | 50.370 | 540 | 231 | 11 | 47 | 554 | 1 | 535 | 0.0 | 527 |
| MS.gene42280.t1 | MTR_8g102900 | 44.403 | 536 | 277 | 11 | 29 | 554 | 108 | 632 | 2.90e-155 | 458 |
| MS.gene42280.t1 | MTR_3g075520 | 45.665 | 519 | 260 | 12 | 47 | 554 | 1 | 508 | 4.75e-151 | 443 |
| MS.gene42280.t1 | MTR_6g088300 | 43.273 | 550 | 283 | 11 | 24 | 554 | 45 | 584 | 2.26e-149 | 442 |
| MS.gene42280.t1 | MTR_4g019520 | 44.007 | 559 | 277 | 15 | 2 | 554 | 3 | 531 | 3.48e-141 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42280.t1 | AT1G75620 | 62.500 | 536 | 183 | 8 | 24 | 554 | 24 | 546 | 0.0 | 673 |
| MS.gene42280.t1 | AT1G19900 | 60.985 | 528 | 195 | 7 | 30 | 554 | 28 | 547 | 0.0 | 663 |
| MS.gene42280.t1 | AT3G57620 | 52.355 | 552 | 235 | 8 | 17 | 554 | 9 | 546 | 0.0 | 596 |
| MS.gene42280.t1 | AT1G14430 | 52.952 | 542 | 227 | 10 | 28 | 554 | 36 | 564 | 0.0 | 553 |
| MS.gene42280.t1 | AT5G19580 | 43.478 | 529 | 284 | 9 | 32 | 555 | 76 | 594 | 8.82e-154 | 453 |
| MS.gene42280.t1 | AT1G67290 | 45.640 | 539 | 272 | 13 | 29 | 555 | 86 | 615 | 4.15e-153 | 452 |
| MS.gene42280.t1 | AT3G53950 | 43.962 | 530 | 271 | 13 | 33 | 555 | 34 | 544 | 5.09e-145 | 429 |
Find 142 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGAAGGTTCGGTTTC+AGG | 0.153751 | 3.2:+89991299 | MS.gene42280:CDS |
| CTTGACCCAACTAAACTATT+TGG | 0.191110 | 3.2:-89991030 | None:intergenic |
| GGGTCCGCTGGTTGGGAATC+AGG | 0.259329 | 3.2:+89990973 | MS.gene42280:CDS |
| CCATAACCCAACTCGGATTC+TGG | 0.259537 | 3.2:-89990867 | None:intergenic |
| TTTGCTGTAGCATCTTTCTT+TGG | 0.263378 | 3.2:-89990481 | None:intergenic |
| GAGCTGTGGGGTCCGCTGGT+TGG | 0.280888 | 3.2:+89990965 | MS.gene42280:CDS |
| AGCTGTGGGGTCCGCTGGTT+GGG | 0.303802 | 3.2:+89990966 | MS.gene42280:CDS |
| GAGAAAGAATGTGTGTTAAA+AGG | 0.305651 | 3.2:-89991372 | None:intergenic |
| ATTTCAATTTCGTTTGTGAT+TGG | 0.306731 | 3.2:-89991269 | None:intergenic |
| TTTCAATTTCGTTTGTGATT+GGG | 0.313192 | 3.2:-89991268 | None:intergenic |
| GGTGCAAGAATGGGTGAATT+TGG | 0.321385 | 3.2:-89991489 | None:intergenic |
| TATAAACCAAATAGTTTAGT+TGG | 0.321989 | 3.2:+89991024 | MS.gene42280:CDS |
| GAGTTCCAAGTCAGGGTGTT+TGG | 0.329231 | 3.2:+89991547 | MS.gene42280:CDS |
| TCACCTTCATATTTAGAGAT+AGG | 0.343841 | 3.2:+89991207 | MS.gene42280:CDS |
| CTCAATGAATCAAAGGTTGT+TGG | 0.356448 | 3.2:+89991392 | MS.gene42280:CDS |
| CCTGAACTAGGATAACTTCT+AGG | 0.356988 | 3.2:-89990688 | None:intergenic |
| GACGGTAGGGTCCTTGTTGC+CGG | 0.364460 | 3.2:+89991117 | MS.gene42280:CDS |
| CCTGACTTGGAACTCCTTGA+TGG | 0.365435 | 3.2:-89991539 | None:intergenic |
| AACATGCACTTACCATCTTC+TGG | 0.367278 | 3.2:-89990168 | None:intergenic |
| TTCGTTTGTGATTGGGGTGC+AGG | 0.367770 | 3.2:-89991261 | None:intergenic |
| TCATTTGTTTGTACAAGAAA+TGG | 0.367997 | 3.2:-89990520 | None:intergenic |
| TTCACCCATTCTTGCACCTC+CGG | 0.369292 | 3.2:+89991494 | MS.gene42280:CDS |
| CAATGATGTGCGTCCTATAA+TGG | 0.369536 | 3.2:+89991233 | MS.gene42280:CDS |
| CCTAGAAGTTATCCTAGTTC+AGG | 0.375775 | 3.2:+89990688 | MS.gene42280:CDS |
| GGTGCAGGAAACACCATTAT+AGG | 0.377276 | 3.2:-89991246 | None:intergenic |
| CCAGAATCCGAGTTGGGTTA+TGG | 0.377736 | 3.2:+89990867 | MS.gene42280:CDS |
| AGTTCCAAGTCAGGGTGTTT+GGG | 0.390210 | 3.2:+89991548 | MS.gene42280:CDS |
| GGATCTCCACCTGGTATTGT+AGG | 0.395977 | 3.2:-89990667 | None:intergenic |
| AATTCTTGCCAATCACAGTT+TGG | 0.398038 | 3.2:-89990128 | None:intergenic |
| AGAGGGATAAGAAGATGAAT+GGG | 0.417257 | 3.2:-89989711 | None:intergenic |
| ATCCATGTCCAAACTGTGAT+TGG | 0.418189 | 3.2:+89990120 | MS.gene42280:CDS |
| TAGCTGAAAATTAGAGTAGT+TGG | 0.420687 | 3.2:-89991572 | None:intergenic |
| GGGGTATTATTTACTATTTG+TGG | 0.425229 | 3.2:+89991515 | MS.gene42280:CDS |
| TTCAATTTCGTTTGTGATTG+GGG | 0.425388 | 3.2:-89991267 | None:intergenic |
| CGTCGTTGAAACCACCGGTT+TGG | 0.425942 | 3.2:-89990073 | None:intergenic |
| ATGATAATTTGTCTTCCATC+TGG | 0.430730 | 3.2:-89990424 | None:intergenic |
| GGTGGAGCTGTGGGGTCCGC+TGG | 0.431880 | 3.2:+89990961 | MS.gene42280:CDS |
| AGGAACACCATATGTTGGTT+TGG | 0.436279 | 3.2:-89990019 | None:intergenic |
| TAAAGAAACGGATTCAAAAC+CGG | 0.438673 | 3.2:-89991003 | None:intergenic |
| GAGAGGGATAAGAAGATGAA+TGG | 0.442115 | 3.2:-89989712 | None:intergenic |
| TCACCCATTCTTGCACCTCC+GGG | 0.443200 | 3.2:+89991495 | MS.gene42280:CDS |
| CCATCTCCGGCTATAGCCGC+TGG | 0.443224 | 3.2:+89989765 | MS.gene42280:CDS |
| ATAAACCAAATAGTTTAGTT+GGG | 0.445735 | 3.2:+89991025 | MS.gene42280:CDS |
| ATTACCTCAGCTTCAACTAA+AGG | 0.447654 | 3.2:-89990748 | None:intergenic |
| TTGATTAATGGTGGAGCTGT+GGG | 0.457680 | 3.2:+89990952 | MS.gene42280:CDS |
| GATGGAAGACAAATTATCAT+TGG | 0.462604 | 3.2:+89990427 | MS.gene42280:CDS |
| TCCATCTGGTAGCATGTGAT+TGG | 0.466030 | 3.2:-89990410 | None:intergenic |
| CACCGTGACGCTTCCATCTC+CGG | 0.471512 | 3.2:+89989752 | MS.gene42280:CDS |
| CTATTTGGTTTATAAAGAAA+CGG | 0.475010 | 3.2:-89991015 | None:intergenic |
| GGTTTGGATAAGAGTTCCGT+TGG | 0.479671 | 3.2:-89990057 | None:intergenic |
| ATCAACAAAACGTCGCCGTT+AGG | 0.480941 | 3.2:-89990934 | None:intergenic |
| CCATCAAGGAGTTCCAAGTC+AGG | 0.481604 | 3.2:+89991539 | MS.gene42280:CDS |
| ACGACATCTACCGTTGGATA+AGG | 0.490170 | 3.2:-89989904 | None:intergenic |
| TAGAAACTACGTCATATTCA+AGG | 0.491736 | 3.2:-89989974 | None:intergenic |
| AACGGAACTCTTATCCAAAC+CGG | 0.494388 | 3.2:+89990059 | MS.gene42280:CDS |
| GTTTGGATAAGAGTTCCGTT+GGG | 0.501961 | 3.2:-89990056 | None:intergenic |
| ATTCTTTCTCAATGAATCAA+AGG | 0.503052 | 3.2:+89991385 | MS.gene42280:CDS |
| ATACCCCGGAGGTGCAAGAA+TGG | 0.506107 | 3.2:-89991499 | None:intergenic |
| CCATCTTCTGGCTGAGAGGC+CGG | 0.506753 | 3.2:-89990156 | None:intergenic |
| GAAGTTCCGTTGGAAACAAA+CGG | 0.507226 | 3.2:-89991170 | None:intergenic |
| AATCCTATCTCTAAATATGA+AGG | 0.509007 | 3.2:-89991210 | None:intergenic |
| TTGGGAATCAGGTCGTAATC+CGG | 0.509273 | 3.2:+89990984 | MS.gene42280:CDS |
| TCTTCATCCAAACCAACATA+TGG | 0.510007 | 3.2:+89990012 | MS.gene42280:CDS |
| AACCGACCAGAATCCGAGTT+GGG | 0.511154 | 3.2:+89990861 | MS.gene42280:CDS |
| GCTTCTAACCGAAGTTCCGT+TGG | 0.513496 | 3.2:-89991180 | None:intergenic |
| TACCCCGGAGGTGCAAGAAT+GGG | 0.517149 | 3.2:-89991498 | None:intergenic |
| GAAGGTTCGGTTTCAGGTGA+AGG | 0.518039 | 3.2:+89991305 | MS.gene42280:CDS |
| TTACTATTTGTGGTCCATCA+AGG | 0.519156 | 3.2:+89991525 | MS.gene42280:CDS |
| TGGACCCAAACACCCTGACT+TGG | 0.521685 | 3.2:-89991552 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.521735 | 3.2:+89990772 | MS.gene42280:CDS |
| TGGGTTATGGAAACTATGCC+AGG | 0.521749 | 3.2:+89990880 | MS.gene42280:CDS |
| ACAGTTTGGACATGGATTGA+AGG | 0.522901 | 3.2:-89990114 | None:intergenic |
| TTGGTATTGCCACTTCAACT+TGG | 0.523039 | 3.2:-89991470 | None:intergenic |
| TGTCCACCAGCGGCTATAGC+CGG | 0.524473 | 3.2:-89989771 | None:intergenic |
| GTTTGTTTCCAACGGAACTT+CGG | 0.525030 | 3.2:+89991172 | MS.gene42280:CDS |
| AAGTTCCGTTGGAAACAAAC+GGG | 0.529792 | 3.2:-89991169 | None:intergenic |
| GTTGATTAATGGTGGAGCTG+TGG | 0.531889 | 3.2:+89990951 | MS.gene42280:CDS |
| GATCTCCACCTGGTATTGTA+GGG | 0.534802 | 3.2:-89990666 | None:intergenic |
| TGCCAATCACAGTTTGGACA+TGG | 0.534978 | 3.2:-89990122 | None:intergenic |
| GTAAAATTGTAATTTACATG+AGG | 0.535472 | 3.2:-89991147 | None:intergenic |
| ACGACGGAGACCGTACCGTT+AGG | 0.538246 | 3.2:+89990090 | MS.gene42280:CDS |
| ACCAACATATGGTGTTCCTC+CGG | 0.539323 | 3.2:+89990023 | MS.gene42280:CDS |
| GTTTCAGGTGAAGGCAACAT+TGG | 0.544359 | 3.2:+89991314 | MS.gene42280:CDS |
| TAAAATTGTAATTTACATGA+GGG | 0.545993 | 3.2:-89991146 | None:intergenic |
| CCGGCCTCTCAGCCAGAAGA+TGG | 0.548508 | 3.2:+89990156 | MS.gene42280:CDS |
| AAAACAGCAGAACCTGAACT+AGG | 0.549812 | 3.2:-89990700 | None:intergenic |
| GAAGCTGAGGTAATGATTTG+TGG | 0.554009 | 3.2:+89990757 | MS.gene42280:CDS |
| GGAAGACAAATTATCATTGG+AGG | 0.556162 | 3.2:+89990430 | MS.gene42280:CDS |
| GCAGTTGAGTGATACATTCG+TGG | 0.557371 | 3.2:-89991081 | None:intergenic |
| CCAGCGGCTATAGCCGGAGA+TGG | 0.561644 | 3.2:-89989765 | None:intergenic |
| ATCGGAGCTTTGAATACATG+TGG | 0.566801 | 3.2:+89990826 | MS.gene42280:CDS |
| CTATAGCCGCTGGTGGACAA+TGG | 0.567409 | 3.2:+89989775 | MS.gene42280:CDS |
| AAAGCCTTTAGTTGAAGCTG+AGG | 0.581362 | 3.2:+89990744 | MS.gene42280:CDS |
| ATTTACATGAGGGTTGCTAC+CGG | 0.582071 | 3.2:-89991136 | None:intergenic |
| ACCGGAGGAACACCATATGT+TGG | 0.582162 | 3.2:-89990024 | None:intergenic |
| AGAAACTACGTCATATTCAA+GGG | 0.582942 | 3.2:-89989973 | None:intergenic |
| GTCTCCGTCGTTGAAACCAC+CGG | 0.584599 | 3.2:-89990078 | None:intergenic |
| ATCAACATACCAAGTTGAAG+TGG | 0.590631 | 3.2:+89991461 | MS.gene42280:CDS |
| GAGCTTTGAATACATGTGGT+CGG | 0.592341 | 3.2:+89990830 | MS.gene42280:CDS |
| AAAACATACCCTACAATACC+AGG | 0.592824 | 3.2:+89990658 | MS.gene42280:CDS |
| TTTGGATAAGAGTTCCGTTG+GGG | 0.597252 | 3.2:-89990055 | None:intergenic |
| ACCAATCACATGCTACCAGA+TGG | 0.598604 | 3.2:+89990409 | MS.gene42280:CDS |
| TCTCCGGCTATAGCCGCTGG+TGG | 0.600687 | 3.2:+89989768 | MS.gene42280:CDS |
| TAACCGACCAGAATCCGAGT+TGG | 0.603354 | 3.2:+89990860 | MS.gene42280:CDS |
| CTTACCATCTTCTGGCTGAG+AGG | 0.606260 | 3.2:-89990160 | None:intergenic |
| GTAGATATTATAATAATGAG+AGG | 0.610209 | 3.2:-89989729 | None:intergenic |
| TTGAGAATCCAAAATCAGTA+CGG | 0.610675 | 3.2:-89989875 | None:intergenic |
| TGGTTTGGATGAAGAGTGGT+CGG | 0.614894 | 3.2:-89990004 | None:intergenic |
| GATTGAAGGTCCTAACGGTA+CGG | 0.622829 | 3.2:-89990100 | None:intergenic |
| AACCCAACTCGGATTCTGGT+CGG | 0.628839 | 3.2:-89990863 | None:intergenic |
| CAGCTCTTACAAAACAACAT+TGG | 0.629515 | 3.2:+89989798 | MS.gene42280:CDS |
| ATTAACACGACATCTACCGT+TGG | 0.632840 | 3.2:-89989910 | None:intergenic |
| AGCCGGAGATGGAAGCGTCA+CGG | 0.634477 | 3.2:-89989754 | None:intergenic |
| TCAAACTTATCCTTATCCAA+CGG | 0.635919 | 3.2:+89989894 | MS.gene42280:CDS |
| GAGGGTTGCTACCGGCAACA+AGG | 0.641296 | 3.2:-89991128 | None:intergenic |
| CACCCATTCTTGCACCTCCG+GGG | 0.644030 | 3.2:+89991496 | MS.gene42280:CDS |
| TATAATCAAACAAAATAGCA+CGG | 0.644345 | 3.2:-89990618 | None:intergenic |
| CATCAAGGAGTTCCAAGTCA+GGG | 0.650832 | 3.2:+89991540 | MS.gene42280:CDS |
| GTGTAGCAATTGCATATGCA+TGG | 0.651312 | 3.2:-89989829 | None:intergenic |
| ATAGTTTCCATAACCCAACT+CGG | 0.651608 | 3.2:-89990874 | None:intergenic |
| TAGATATTATAATAATGAGA+GGG | 0.654289 | 3.2:-89989728 | None:intergenic |
| ACATGGATTGAAGGTCCTAA+CGG | 0.659237 | 3.2:-89990105 | None:intergenic |
| AGGCGGTGCATACATTGTCA+CGG | 0.661155 | 3.2:-89991352 | None:intergenic |
| GGAACTCTTATCCAAACCGG+TGG | 0.663220 | 3.2:+89990062 | MS.gene42280:CDS |
| TGATTAATGGTGGAGCTGTG+GGG | 0.663789 | 3.2:+89990953 | MS.gene42280:CDS |
| ACAAATAGTAAATAATACCC+CGG | 0.667706 | 3.2:-89991513 | None:intergenic |
| GAGGGATAAGAAGATGAATG+GGG | 0.671217 | 3.2:-89989710 | None:intergenic |
| TCACTCATAACTCTTCCACC+TGG | 0.673279 | 3.2:-89990898 | None:intergenic |
| GAGCTGCCATTGTCCACCAG+CGG | 0.673603 | 3.2:-89989781 | None:intergenic |
| ATGTTGGTTTGGATGAAGAG+TGG | 0.675999 | 3.2:-89990008 | None:intergenic |
| ACGACCTGATTCCCAACCAG+CGG | 0.683895 | 3.2:-89990977 | None:intergenic |
| GTTTGATTATAACAGCAACA+AGG | 0.685381 | 3.2:+89990630 | MS.gene42280:CDS |
| GCTGAGGTAATGATTTGTGG+TGG | 0.695956 | 3.2:+89990760 | MS.gene42280:CDS |
| CAAACCGGTGGTTTCAACGA+CGG | 0.697076 | 3.2:+89990074 | MS.gene42280:CDS |
| TTGGATAAGAGTTCCGTTGG+GGG | 0.703483 | 3.2:-89990054 | None:intergenic |
| GATTGGCAAGAATTCAACGC+CGG | 0.705232 | 3.2:+89990137 | MS.gene42280:CDS |
| TAACTTCTAGGATCTCCACC+TGG | 0.707322 | 3.2:-89990676 | None:intergenic |
| ACATACCCTACAATACCAGG+TGG | 0.726590 | 3.2:+89990661 | MS.gene42280:CDS |
| GTTATGGAAACTATGCCAGG+TGG | 0.735089 | 3.2:+89990883 | MS.gene42280:CDS |
| CGGAGATGGAAGCGTCACGG+TGG | 0.736799 | 3.2:-89989751 | None:intergenic |
| AATAGTAAATAATACCCCGG+AGG | 0.749616 | 3.2:-89991510 | None:intergenic |
| AAAGAATGTGTGTTAAAAGG+CGG | 0.786062 | 3.2:-89991369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAATTTACATGA+GGG | - | chr3.2:89991149-89991168 | None:intergenic | 15.0% |
| !! | TAGATATTATAATAATGAGA+GGG | - | chr3.2:89989731-89989750 | None:intergenic | 15.0% |
| !! | TATTATTTACTATCAAACTA+AGG | - | chr3.2:89990338-89990357 | None:intergenic | 15.0% |
| !!! | ATCATTTCTTAGTATTTTTT+TGG | + | chr3.2:89990216-89990235 | MS.gene42280:intron | 15.0% |
| !! | ATAAACCAAATAGTTTAGTT+GGG | + | chr3.2:89991025-89991044 | MS.gene42280:CDS | 20.0% |
| !! | GTAAAATTGTAATTTACATG+AGG | - | chr3.2:89991150-89991169 | None:intergenic | 20.0% |
| !! | GTAGATATTATAATAATGAG+AGG | - | chr3.2:89989732-89989751 | None:intergenic | 20.0% |
| !! | TATAAACCAAATAGTTTAGT+TGG | + | chr3.2:89991024-89991043 | MS.gene42280:CDS | 20.0% |
| !! | TATAATCAAACAAAATAGCA+CGG | - | chr3.2:89990621-89990640 | None:intergenic | 20.0% |
| !! | TCTTATGAAAAAACATTACA+AGG | + | chr3.2:89990796-89990815 | MS.gene42280:CDS | 20.0% |
| !!! | CTATTTGGTTTATAAAGAAA+CGG | - | chr3.2:89991018-89991037 | None:intergenic | 20.0% |
| ! | AATCCTATCTCTAAATATGA+AGG | - | chr3.2:89991213-89991232 | None:intergenic | 25.0% |
| ! | ACAAATAGTAAATAATACCC+CGG | - | chr3.2:89991516-89991535 | None:intergenic | 25.0% |
| ! | AGTAGTAGTAAAAATGTTGT+TGG | + | chr3.2:89991429-89991448 | MS.gene42280:CDS | 25.0% |
| ! | ATTCTTTCTCAATGAATCAA+AGG | + | chr3.2:89991385-89991404 | MS.gene42280:CDS | 25.0% |
| ! | ATTTCAATTTCGTTTGTGAT+TGG | - | chr3.2:89991272-89991291 | None:intergenic | 25.0% |
| ! | GAAGTAACTATATCTCTAAT+AGG | + | chr3.2:89990380-89990399 | MS.gene42280:intron | 25.0% |
| ! | TAAGTGCATGTTTAGATTAA+CGG | + | chr3.2:89990179-89990198 | MS.gene42280:intron | 25.0% |
| ! | TCATTTGTTTGTACAAGAAA+TGG | - | chr3.2:89990523-89990542 | None:intergenic | 25.0% |
| ! | TCTACATTGAGAAAAACAAA+CGG | - | chr3.2:89990571-89990590 | None:intergenic | 25.0% |
| ! | TTTCAATTTCGTTTGTGATT+GGG | - | chr3.2:89991271-89991290 | None:intergenic | 25.0% |
| !!! | ACATTACAAGGTAGTTTTAT+CGG | + | chr3.2:89990808-89990827 | MS.gene42280:CDS | 25.0% |
| !!! | GTTTTTTCATAAGAACCTTT+TGG | - | chr3.2:89990790-89990809 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCTCAATGTAGA+TGG | + | chr3.2:89990571-89990590 | MS.gene42280:CDS | 25.0% |
| AAAGAATGTGTGTTAAAAGG+CGG | - | chr3.2:89991372-89991391 | None:intergenic | 30.0% | |
| AATAAGAAATATAAGTCCCG+TGG | - | chr3.2:89990296-89990315 | None:intergenic | 30.0% | |
| AGAAACTACGTCATATTCAA+GGG | - | chr3.2:89989976-89989995 | None:intergenic | 30.0% | |
| AGAAATGATTCTTTCAAAGC+TGG | - | chr3.2:89990205-89990224 | None:intergenic | 30.0% | |
| ATAAGAAATATAAGTCCCGT+GGG | - | chr3.2:89990295-89990314 | None:intergenic | 30.0% | |
| CTACATTGAGAAAAACAAAC+GGG | - | chr3.2:89990570-89990589 | None:intergenic | 30.0% | |
| GAAATACGCTCAAAAATTGA+AGG | + | chr3.2:89991287-89991306 | MS.gene42280:CDS | 30.0% | |
| GAGAAAGAATGTGTGTTAAA+AGG | - | chr3.2:89991375-89991394 | None:intergenic | 30.0% | |
| GATGGAAGACAAATTATCAT+TGG | + | chr3.2:89990427-89990446 | MS.gene42280:CDS | 30.0% | |
| GTTTGATTATAACAGCAACA+AGG | + | chr3.2:89990630-89990649 | MS.gene42280:CDS | 30.0% | |
| TAGAAACTACGTCATATTCA+AGG | - | chr3.2:89989977-89989996 | None:intergenic | 30.0% | |
| TCAAACTTATCCTTATCCAA+CGG | + | chr3.2:89989894-89989913 | MS.gene42280:CDS | 30.0% | |
| TCACCTTCATATTTAGAGAT+AGG | + | chr3.2:89991207-89991226 | MS.gene42280:CDS | 30.0% | |
| TTCAATTTCGTTTGTGATTG+GGG | - | chr3.2:89991270-89991289 | None:intergenic | 30.0% | |
| TTGAGAATCCAAAATCAGTA+CGG | - | chr3.2:89989878-89989897 | None:intergenic | 30.0% | |
| ! | ATGATAATTTGTCTTCCATC+TGG | - | chr3.2:89990427-89990446 | None:intergenic | 30.0% |
| ! | GACATGATTTTACTTCCTAA+CGG | + | chr3.2:89990919-89990938 | MS.gene42280:CDS | 30.0% |
| ! | GGGGTATTATTTACTATTTG+TGG | + | chr3.2:89991515-89991534 | MS.gene42280:CDS | 30.0% |
| ! | TAAAGAAACGGATTCAAAAC+CGG | - | chr3.2:89991006-89991025 | None:intergenic | 30.0% |
| !! | TTTTTCACAACTTGTTCTTG+TGG | - | chr3.2:89989936-89989955 | None:intergenic | 30.0% |
| !!! | ATTTTTGACCGTACTGATTT+TGG | + | chr3.2:89989867-89989886 | MS.gene42280:CDS | 30.0% |
| AAAACATACCCTACAATACC+AGG | + | chr3.2:89990658-89990677 | MS.gene42280:CDS | 35.0% | |
| AATAGTAAATAATACCCCGG+AGG | - | chr3.2:89991513-89991532 | None:intergenic | 35.0% | |
| AATTCTTGCCAATCACAGTT+TGG | - | chr3.2:89990131-89990150 | None:intergenic | 35.0% | |
| ACGCTCAAAAATTGAAGGTT+CGG | + | chr3.2:89991292-89991311 | MS.gene42280:CDS | 35.0% | |
| AGAGGGATAAGAAGATGAAT+GGG | - | chr3.2:89989714-89989733 | None:intergenic | 35.0% | |
| ATAGTTTCCATAACCCAACT+CGG | - | chr3.2:89990877-89990896 | None:intergenic | 35.0% | |
| ATTACCTCAGCTTCAACTAA+AGG | - | chr3.2:89990751-89990770 | None:intergenic | 35.0% | |
| CAGCTCTTACAAAACAACAT+TGG | + | chr3.2:89989798-89989817 | MS.gene42280:CDS | 35.0% | |
| CTCAATGAATCAAAGGTTGT+TGG | + | chr3.2:89991392-89991411 | MS.gene42280:CDS | 35.0% | |
| CTTGACCCAACTAAACTATT+TGG | - | chr3.2:89991033-89991052 | None:intergenic | 35.0% | |
| GGAAGACAAATTATCATTGG+AGG | + | chr3.2:89990430-89990449 | MS.gene42280:CDS | 35.0% | |
| TACGGTCAAAAATGATGACA+CGG | - | chr3.2:89989860-89989879 | None:intergenic | 35.0% | |
| TCTTCATCCAAACCAACATA+TGG | + | chr3.2:89990012-89990031 | MS.gene42280:CDS | 35.0% | |
| TTACTATTTGTGGTCCATCA+AGG | + | chr3.2:89991525-89991544 | MS.gene42280:CDS | 35.0% | |
| ! | AAAATTGAAGGTTCGGTTTC+AGG | + | chr3.2:89991299-89991318 | MS.gene42280:CDS | 35.0% |
| ! | ATCAACATACCAAGTTGAAG+TGG | + | chr3.2:89991461-89991480 | MS.gene42280:CDS | 35.0% |
| ! | GGCTTTTGTAAGTTTCTTAG+AGG | - | chr3.2:89990730-89990749 | None:intergenic | 35.0% |
| ! | TTTGCTGTAGCATCTTTCTT+TGG | - | chr3.2:89990484-89990503 | None:intergenic | 35.0% |
| ! | TTTTACCCGTTTGTTTCCAA+CGG | + | chr3.2:89991164-89991183 | MS.gene42280:CDS | 35.0% |
| !! | GACGTTTTGTTGATTAATGG+TGG | + | chr3.2:89990943-89990962 | MS.gene42280:CDS | 35.0% |
| AAAACAGCAGAACCTGAACT+AGG | - | chr3.2:89990703-89990722 | None:intergenic | 40.0% | |
| AAAGCCTTTAGTTGAAGCTG+AGG | + | chr3.2:89990744-89990763 | MS.gene42280:CDS | 40.0% | |
| AACATGCACTTACCATCTTC+TGG | - | chr3.2:89990171-89990190 | None:intergenic | 40.0% | |
| AACGGAACTCTTATCCAAAC+CGG | + | chr3.2:89990059-89990078 | MS.gene42280:CDS | 40.0% | |
| AAGTTCCGTTGGAAACAAAC+GGG | - | chr3.2:89991172-89991191 | None:intergenic | 40.0% | |
| ATCCATGTCCAAACTGTGAT+TGG | + | chr3.2:89990120-89990139 | MS.gene42280:CDS | 40.0% | |
| ATTAACACGACATCTACCGT+TGG | - | chr3.2:89989913-89989932 | None:intergenic | 40.0% | |
| ATTGTTCTTAGCTAAGCCCA+CGG | + | chr3.2:89990276-89990295 | MS.gene42280:intron | 40.0% | |
| ATTTACATGAGGGTTGCTAC+CGG | - | chr3.2:89991139-89991158 | None:intergenic | 40.0% | |
| CAATGATGTGCGTCCTATAA+TGG | + | chr3.2:89991233-89991252 | MS.gene42280:CDS | 40.0% | |
| CCTAGAAGTTATCCTAGTTC+AGG | + | chr3.2:89990688-89990707 | MS.gene42280:CDS | 40.0% | |
| CCTGAACTAGGATAACTTCT+AGG | - | chr3.2:89990691-89990710 | None:intergenic | 40.0% | |
| GAAGCTGAGGTAATGATTTG+TGG | + | chr3.2:89990757-89990776 | MS.gene42280:CDS | 40.0% | |
| GAAGTTCCGTTGGAAACAAA+CGG | - | chr3.2:89991173-89991192 | None:intergenic | 40.0% | |
| GAGAGGGATAAGAAGATGAA+TGG | - | chr3.2:89989715-89989734 | None:intergenic | 40.0% | |
| GAGGGATAAGAAGATGAATG+GGG | - | chr3.2:89989713-89989732 | None:intergenic | 40.0% | |
| GGCAACATTGGTGAAAAACA+TGG | + | chr3.2:89991326-89991345 | MS.gene42280:CDS | 40.0% | |
| GTGTAGCAATTGCATATGCA+TGG | - | chr3.2:89989832-89989851 | None:intergenic | 40.0% | |
| GTTTGGATAAGAGTTCCGTT+GGG | - | chr3.2:89990059-89990078 | None:intergenic | 40.0% | |
| GTTTGTTTCCAACGGAACTT+CGG | + | chr3.2:89991172-89991191 | MS.gene42280:CDS | 40.0% | |
| TTTGGATAAGAGTTCCGTTG+GGG | - | chr3.2:89990058-89990077 | None:intergenic | 40.0% | |
| ! | ACAGTTTGGACATGGATTGA+AGG | - | chr3.2:89990117-89990136 | None:intergenic | 40.0% |
| ! | ACATGGATTGAAGGTCCTAA+CGG | - | chr3.2:89990108-89990127 | None:intergenic | 40.0% |
| ! | AGGAACACCATATGTTGGTT+TGG | - | chr3.2:89990022-89990041 | None:intergenic | 40.0% |
| ! | TGTTTTGCTAAGAGACGGTA+GGG | + | chr3.2:89991104-89991123 | MS.gene42280:CDS | 40.0% |
| ! | TTGATTAATGGTGGAGCTGT+GGG | + | chr3.2:89990952-89990971 | MS.gene42280:CDS | 40.0% |
| ! | TTGGTATTGCCACTTCAACT+TGG | - | chr3.2:89991473-89991492 | None:intergenic | 40.0% |
| !! | ATCGGAGCTTTGAATACATG+TGG | + | chr3.2:89990826-89990845 | MS.gene42280:CDS | 40.0% |
| !! | ATGTTGGTTTGGATGAAGAG+TGG | - | chr3.2:89990011-89990030 | None:intergenic | 40.0% |
| !! | GAGCTTTGAATACATGTGGT+CGG | + | chr3.2:89990830-89990849 | MS.gene42280:CDS | 40.0% |
| !! | GGCGACGTTTTGTTGATTAA+TGG | + | chr3.2:89990940-89990959 | MS.gene42280:CDS | 40.0% |
| !!! | ACTGCTGTTTTGCTAAGAGA+CGG | + | chr3.2:89991099-89991118 | MS.gene42280:CDS | 40.0% |
| ACATACCCTACAATACCAGG+TGG | + | chr3.2:89990661-89990680 | MS.gene42280:CDS | 45.0% | |
| ACCAACATATGGTGTTCCTC+CGG | + | chr3.2:89990023-89990042 | MS.gene42280:CDS | 45.0% | |
| ACCAATCACATGCTACCAGA+TGG | + | chr3.2:89990409-89990428 | MS.gene42280:CDS | 45.0% | |
| ACGACATCTACCGTTGGATA+AGG | - | chr3.2:89989907-89989926 | None:intergenic | 45.0% | |
| ATCAACAAAACGTCGCCGTT+AGG | - | chr3.2:89990937-89990956 | None:intergenic | 45.0% | |
| CATCAAGGAGTTCCAAGTCA+GGG | + | chr3.2:89991540-89991559 | MS.gene42280:CDS | 45.0% | |
| GATCTCCACCTGGTATTGTA+GGG | - | chr3.2:89990669-89990688 | None:intergenic | 45.0% | |
| GATTGAAGGTCCTAACGGTA+CGG | - | chr3.2:89990103-89990122 | None:intergenic | 45.0% | |
| GATTGGCAAGAATTCAACGC+CGG | + | chr3.2:89990137-89990156 | MS.gene42280:CDS | 45.0% | |
| GCAGTTGAGTGATACATTCG+TGG | - | chr3.2:89991084-89991103 | None:intergenic | 45.0% | |
| GGTGCAAGAATGGGTGAATT+TGG | - | chr3.2:89991492-89991511 | None:intergenic | 45.0% | |
| GGTGCAGGAAACACCATTAT+AGG | - | chr3.2:89991249-89991268 | None:intergenic | 45.0% | |
| GGTTTGGATAAGAGTTCCGT+TGG | - | chr3.2:89990060-89990079 | None:intergenic | 45.0% | |
| GTTATGGAAACTATGCCAGG+TGG | + | chr3.2:89990883-89990902 | MS.gene42280:CDS | 45.0% | |
| TCACTCATAACTCTTCCACC+TGG | - | chr3.2:89990901-89990920 | None:intergenic | 45.0% | |
| TCCATCTGGTAGCATGTGAT+TGG | - | chr3.2:89990413-89990432 | None:intergenic | 45.0% | |
| TGCCAATCACAGTTTGGACA+TGG | - | chr3.2:89990125-89990144 | None:intergenic | 45.0% | |
| TGGGTTATGGAAACTATGCC+AGG | + | chr3.2:89990880-89990899 | MS.gene42280:CDS | 45.0% | |
| TTGGATAAGAGTTCCGTTGG+GGG | - | chr3.2:89990057-89990076 | None:intergenic | 45.0% | |
| TTGGGAATCAGGTCGTAATC+CGG | + | chr3.2:89990984-89991003 | MS.gene42280:CDS | 45.0% | |
| TTGTTCTTAGCTAAGCCCAC+GGG | + | chr3.2:89990277-89990296 | MS.gene42280:intron | 45.0% | |
| ! | AGTTCCAAGTCAGGGTGTTT+GGG | + | chr3.2:89991548-89991567 | MS.gene42280:CDS | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | + | chr3.2:89990772-89990791 | MS.gene42280:CDS | 45.0% |
| ! | CTGTTTTGCTAAGAGACGGT+AGG | + | chr3.2:89991103-89991122 | MS.gene42280:CDS | 45.0% |
| ! | GCTGAGGTAATGATTTGTGG+TGG | + | chr3.2:89990760-89990779 | MS.gene42280:CDS | 45.0% |
| ! | GTTGATTAATGGTGGAGCTG+TGG | + | chr3.2:89990951-89990970 | MS.gene42280:CDS | 45.0% |
| ! | GTTTCAGGTGAAGGCAACAT+TGG | + | chr3.2:89991314-89991333 | MS.gene42280:CDS | 45.0% |
| ! | TGATTAATGGTGGAGCTGTG+GGG | + | chr3.2:89990953-89990972 | MS.gene42280:CDS | 45.0% |
| ! | TGGTTTGGATGAAGAGTGGT+CGG | - | chr3.2:89990007-89990026 | None:intergenic | 45.0% |
| !! | TAACTTCTAGGATCTCCACC+TGG | - | chr3.2:89990679-89990698 | None:intergenic | 45.0% |
| AACCCAACTCGGATTCTGGT+CGG | - | chr3.2:89990866-89990885 | None:intergenic | 50.0% | |
| AACCGACCAGAATCCGAGTT+GGG | + | chr3.2:89990861-89990880 | MS.gene42280:CDS | 50.0% | |
| ACCGGAGGAACACCATATGT+TGG | - | chr3.2:89990027-89990046 | None:intergenic | 50.0% | |
| AGGCGGTGCATACATTGTCA+CGG | - | chr3.2:89991355-89991374 | None:intergenic | 50.0% | |
| CAAACCGGTGGTTTCAACGA+CGG | + | chr3.2:89990074-89990093 | MS.gene42280:CDS | 50.0% | |
| CCATAACCCAACTCGGATTC+TGG | - | chr3.2:89990870-89990889 | None:intergenic | 50.0% | |
| CCATCAAGGAGTTCCAAGTC+AGG | + | chr3.2:89991539-89991558 | MS.gene42280:CDS | 50.0% | |
| GCTTCTAACCGAAGTTCCGT+TGG | - | chr3.2:89991183-89991202 | None:intergenic | 50.0% | |
| GGAACTCTTATCCAAACCGG+TGG | + | chr3.2:89990062-89990081 | MS.gene42280:CDS | 50.0% | |
| GGATCTCCACCTGGTATTGT+AGG | - | chr3.2:89990670-89990689 | None:intergenic | 50.0% | |
| TAACCGACCAGAATCCGAGT+TGG | + | chr3.2:89990860-89990879 | MS.gene42280:CDS | 50.0% | |
| TTCACCCATTCTTGCACCTC+CGG | + | chr3.2:89991494-89991513 | MS.gene42280:CDS | 50.0% | |
| TTCGTTTGTGATTGGGGTGC+AGG | - | chr3.2:89991264-89991283 | None:intergenic | 50.0% | |
| ! | CCAGAATCCGAGTTGGGTTA+TGG | + | chr3.2:89990867-89990886 | MS.gene42280:CDS | 50.0% |
| ! | CTTACCATCTTCTGGCTGAG+AGG | - | chr3.2:89990163-89990182 | None:intergenic | 50.0% |
| ! | GAAGGTTCGGTTTCAGGTGA+AGG | + | chr3.2:89991305-89991324 | MS.gene42280:CDS | 50.0% |
| ! | GAGTTCCAAGTCAGGGTGTT+TGG | + | chr3.2:89991547-89991566 | MS.gene42280:CDS | 50.0% |
| !! | CCTGACTTGGAACTCCTTGA+TGG | - | chr3.2:89991542-89991561 | None:intergenic | 50.0% |
| AAGAGTTCCGTTGGGGGAGA+CGG | - | chr3.2:89990051-89990070 | None:intergenic | 55.0% | |
| ACGACCTGATTCCCAACCAG+CGG | - | chr3.2:89990980-89990999 | None:intergenic | 55.0% | |
| GTCTCCGTCGTTGAAACCAC+CGG | - | chr3.2:89990081-89990100 | None:intergenic | 55.0% | |
| TCACCCATTCTTGCACCTCC+GGG | + | chr3.2:89991495-89991514 | MS.gene42280:CDS | 55.0% | |
| TGGACCCAAACACCCTGACT+TGG | - | chr3.2:89991555-89991574 | None:intergenic | 55.0% | |
| ! | ATACCCCGGAGGTGCAAGAA+TGG | - | chr3.2:89991502-89991521 | None:intergenic | 55.0% |
| ! | CGTCGTTGAAACCACCGGTT+TGG | - | chr3.2:89990076-89990095 | None:intergenic | 55.0% |
| ! | CTATAGCCGCTGGTGGACAA+TGG | + | chr3.2:89989775-89989794 | MS.gene42280:CDS | 55.0% |
| ! | TACCCCGGAGGTGCAAGAAT+GGG | - | chr3.2:89991501-89991520 | None:intergenic | 55.0% |
| ACGACGGAGACCGTACCGTT+AGG | + | chr3.2:89990090-89990109 | MS.gene42280:CDS | 60.0% | |
| CACCCATTCTTGCACCTCCG+GGG | + | chr3.2:89991496-89991515 | MS.gene42280:CDS | 60.0% | |
| CACCGTGACGCTTCCATCTC+CGG | + | chr3.2:89989752-89989771 | MS.gene42280:CDS | 60.0% | |
| GACGGTAGGGTCCTTGTTGC+CGG | + | chr3.2:89991117-89991136 | MS.gene42280:CDS | 60.0% | |
| GAGCTGCCATTGTCCACCAG+CGG | - | chr3.2:89989784-89989803 | None:intergenic | 60.0% | |
| GAGGGTTGCTACCGGCAACA+AGG | - | chr3.2:89991131-89991150 | None:intergenic | 60.0% | |
| TGTCCACCAGCGGCTATAGC+CGG | - | chr3.2:89989774-89989793 | None:intergenic | 60.0% | |
| ! | CCATCTTCTGGCTGAGAGGC+CGG | - | chr3.2:89990159-89990178 | None:intergenic | 60.0% |
| !! | AGCCGGAGATGGAAGCGTCA+CGG | - | chr3.2:89989757-89989776 | None:intergenic | 60.0% |
| CCAGCGGCTATAGCCGGAGA+TGG | - | chr3.2:89989768-89989787 | None:intergenic | 65.0% | |
| CCATCTCCGGCTATAGCCGC+TGG | + | chr3.2:89989765-89989784 | MS.gene42280:CDS | 65.0% | |
| CCGGCCTCTCAGCCAGAAGA+TGG | + | chr3.2:89990156-89990175 | MS.gene42280:CDS | 65.0% | |
| TCCGGTTCCGTCTCCCCCAA+CGG | + | chr3.2:89990041-89990060 | MS.gene42280:CDS | 65.0% | |
| TCCGTTGGGGGAGACGGAAC+CGG | - | chr3.2:89990045-89990064 | None:intergenic | 65.0% | |
| TCTCCGGCTATAGCCGCTGG+TGG | + | chr3.2:89989768-89989787 | MS.gene42280:CDS | 65.0% | |
| ! | AGCTGTGGGGTCCGCTGGTT+GGG | + | chr3.2:89990966-89990985 | MS.gene42280:CDS | 65.0% |
| ! | GGGTCCGCTGGTTGGGAATC+AGG | + | chr3.2:89990973-89990992 | MS.gene42280:CDS | 65.0% |
| !! | CGGAGATGGAAGCGTCACGG+TGG | - | chr3.2:89989754-89989773 | None:intergenic | 65.0% |
| GAGCTGTGGGGTCCGCTGGT+TGG | + | chr3.2:89990965-89990984 | MS.gene42280:CDS | 70.0% | |
| GTTGGGGGAGACGGAACCGG+AGG | - | chr3.2:89990042-89990061 | None:intergenic | 70.0% | |
| GGTGGAGCTGTGGGGTCCGC+TGG | + | chr3.2:89990961-89990980 | MS.gene42280:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89989693 | 89991584 | 89989693 | ID=MS.gene42280 |
| chr3.2 | mRNA | 89989693 | 89991584 | 89989693 | ID=MS.gene42280.t1;Parent=MS.gene42280 |
| chr3.2 | exon | 89989693 | 89990177 | 89989693 | ID=MS.gene42280.t1.exon1;Parent=MS.gene42280.t1 |
| chr3.2 | CDS | 89989693 | 89990177 | 89989693 | ID=cds.MS.gene42280.t1;Parent=MS.gene42280.t1 |
| chr3.2 | exon | 89990402 | 89991584 | 89990402 | ID=MS.gene42280.t1.exon2;Parent=MS.gene42280.t1 |
| chr3.2 | CDS | 89990402 | 89991584 | 89990402 | ID=cds.MS.gene42280.t1;Parent=MS.gene42280.t1 |
| Gene Sequence |
| Protein sequence |
