Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27027.t1 | XP_003589379.1 | 96.5 | 515 | 17 | 1 | 30 | 544 | 30 | 543 | 7.20E-299 | 1035.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27027.t1 | Q9FYG4 | 48.3 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 1.6e-134 | 481.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27027.t1 | G7I5Z0 | 96.5 | 515 | 17 | 1 | 30 | 544 | 30 | 543 | 5.2e-299 | 1035.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene27027 | 0.842892 | 1.96E-58 | -1.69E-46 |
| MS.gene058168 | MS.gene27027 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene059006 | MS.gene27027 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene059124 | MS.gene27027 | 0.802108 | 6.56E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048092 | MS.gene27027 | PPI |
| MS.gene27027 | MS.gene050500 | PPI |
| MS.gene27027 | MS.gene92577 | PPI |
| MS.gene27027 | MS.gene037665 | PPI |
| MS.gene27027 | MS.gene73248 | PPI |
| MS.gene024604 | MS.gene27027 | PPI |
| MS.gene22907 | MS.gene27027 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27027.t1 | MTR_1g023570 | 95.948 | 543 | 20 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1043 |
| MS.gene27027.t1 | MTR_3g113210 | 71.212 | 528 | 142 | 5 | 26 | 544 | 29 | 555 | 0.0 | 798 |
| MS.gene27027.t1 | MTR_6g004960 | 73.062 | 516 | 134 | 3 | 34 | 544 | 1 | 516 | 0.0 | 796 |
| MS.gene27027.t1 | MTR_7g114530 | 57.824 | 524 | 210 | 5 | 30 | 544 | 49 | 570 | 0.0 | 617 |
| MS.gene27027.t1 | MTR_5g038410 | 49.162 | 537 | 234 | 11 | 44 | 543 | 1 | 535 | 5.93e-179 | 515 |
| MS.gene27027.t1 | MTR_8g102900 | 44.612 | 529 | 278 | 12 | 26 | 543 | 108 | 632 | 2.57e-152 | 450 |
| MS.gene27027.t1 | MTR_4g019520 | 45.185 | 540 | 277 | 11 | 9 | 543 | 6 | 531 | 5.52e-148 | 436 |
| MS.gene27027.t1 | MTR_6g088300 | 43.843 | 536 | 276 | 14 | 28 | 543 | 54 | 584 | 1.17e-144 | 429 |
| MS.gene27027.t1 | MTR_3g075520 | 43.969 | 514 | 268 | 10 | 44 | 543 | 1 | 508 | 1.37e-143 | 424 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27027.t1 | AT1G75620 | 61.850 | 519 | 186 | 6 | 30 | 543 | 35 | 546 | 0.0 | 664 |
| MS.gene27027.t1 | AT1G19900 | 59.501 | 521 | 206 | 4 | 27 | 543 | 28 | 547 | 0.0 | 660 |
| MS.gene27027.t1 | AT3G57620 | 51.560 | 545 | 242 | 6 | 14 | 543 | 9 | 546 | 0.0 | 587 |
| MS.gene27027.t1 | AT1G14430 | 50.542 | 554 | 250 | 8 | 7 | 543 | 18 | 564 | 0.0 | 553 |
| MS.gene27027.t1 | AT5G19580 | 46.857 | 525 | 264 | 10 | 29 | 544 | 76 | 594 | 8.88e-165 | 481 |
| MS.gene27027.t1 | AT1G67290 | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 8.85e-163 | 476 |
| MS.gene27027.t1 | AT3G53950 | 44.952 | 525 | 265 | 12 | 30 | 544 | 34 | 544 | 2.03e-146 | 432 |
Find 157 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCATTCCACTGCAATTT+TGG | 0.154597 | 1.3:-1631964 | MS.gene27027:CDS |
| AGCAACATTGGATAAGAATT+TGG | 0.214373 | 1.3:-1631733 | MS.gene27027:CDS |
| TCCACAACCCATGTTGGATT+TGG | 0.222957 | 1.3:+1632185 | None:intergenic |
| AAATTCCTAGTGAAGGAATT+TGG | 0.231449 | 1.3:-1631524 | MS.gene27027:CDS |
| ATAATTAATGGAGCGGGTTC+GGG | 0.268444 | 1.3:-1632101 | MS.gene27027:CDS |
| GATAATTAATGGAGCGGGTT+CGG | 0.293058 | 1.3:-1632102 | MS.gene27027:CDS |
| GTGATTGTTGTTATGAGAAT+TGG | 0.326429 | 1.3:+1633804 | None:intergenic |
| CCACAACCCATGTTGGATTT+GGG | 0.333106 | 1.3:+1632186 | None:intergenic |
| GCATCAAGGCGTGAGTTTCT+TGG | 0.335410 | 1.3:-1632245 | MS.gene27027:CDS |
| TCACCTATTCTTGCACCTCC+TGG | 0.339464 | 1.3:-1631576 | MS.gene27027:CDS |
| ATTATCAAAACGTCCCCATT+TGG | 0.341185 | 1.3:+1632119 | None:intergenic |
| ATAAAATTGTAACCAATATG+AGG | 0.355050 | 1.3:+1631906 | None:intergenic |
| AACCGATTGCACGGCTCATT+CGG | 0.355271 | 1.3:-1633589 | MS.gene27027:CDS |
| CACCAACAACCTCTGATTCA+TGG | 0.367118 | 1.3:+1631665 | None:intergenic |
| GACACTTTCCGTTGGGTAAA+GGG | 0.373285 | 1.3:+1633640 | None:intergenic |
| GGGACAGCAGGGTGGGAATA+CGG | 0.374378 | 1.3:-1632080 | MS.gene27027:CDS |
| TAAAGAACCGGATTTAGAAC+TGG | 0.381761 | 1.3:+1632050 | None:intergenic |
| TACAAAACTAATAACGTAAT+CGG | 0.382791 | 1.3:-1632029 | MS.gene27027:CDS |
| CGTGATGGTAGGGTTCTTGT+TGG | 0.385112 | 1.3:-1631939 | MS.gene27027:CDS |
| GGAGCGGGTTCGGGGACAGC+AGG | 0.386297 | 1.3:-1632092 | MS.gene27027:CDS |
| ACTGACGTTTGGTGTTCTTC+CGG | 0.387753 | 1.3:-1633519 | MS.gene27027:CDS |
| AGTTATCCAAGCTCAGGTTC+AGG | 0.393608 | 1.3:-1632359 | MS.gene27027:CDS |
| TGGAAGAAGGAAGAGGAGAT+AGG | 0.394304 | 1.3:+1633824 | None:intergenic |
| GAAAATGAGTGTGTGTTAAA+AGG | 0.395788 | 1.3:+1631687 | None:intergenic |
| CCATCTTTGGTAGCCGCAGC+TGG | 0.403295 | 1.3:-1633774 | MS.gene27027:CDS |
| TTATCAAAACGTCCCCATTT+GGG | 0.409918 | 1.3:+1632120 | None:intergenic |
| ATGCCTAGGGCTAGAGTAAT+GGG | 0.418773 | 1.3:-1632158 | MS.gene27027:CDS |
| GGTGGTAGCAACCCTCATAT+TGG | 0.419674 | 1.3:-1631918 | MS.gene27027:CDS |
| AATCACCACCACCCCATCTT+TGG | 0.419887 | 1.3:-1633787 | MS.gene27027:CDS |
| GGACAGCAGGGTGGGAATAC+GGG | 0.420291 | 1.3:-1632079 | MS.gene27027:CDS |
| CCAGCTGCGGCTACCAAAGA+TGG | 0.424781 | 1.3:+1633774 | None:intergenic |
| GTCTGGACAAGTGTTCCTTT+AGG | 0.436088 | 1.3:+1633486 | None:intergenic |
| TTTGATTGTAGATTCTTCAA+TGG | 0.436753 | 1.3:+1632326 | None:intergenic |
| CGTTTGGTGTTCTTCCGGTT+CGG | 0.443827 | 1.3:-1633514 | MS.gene27027:CDS |
| ATATTTGATCGTACTGACTT+TGG | 0.444418 | 1.3:-1633675 | MS.gene27027:CDS |
| GGGTCCCCACCTGGGATTTG+AGG | 0.445198 | 1.3:+1632386 | None:intergenic |
| AAGGATTGTGGCTTCTACTT+CGG | 0.446379 | 1.3:-1631802 | MS.gene27027:CDS |
| CGACACTTTCCGTTGGGTAA+AGG | 0.450947 | 1.3:+1633639 | None:intergenic |
| CATCGTTGTAGCCACCGGTC+TGG | 0.451241 | 1.3:+1633469 | None:intergenic |
| GACGGACGTCAGATTATCAT+TGG | 0.452067 | 1.3:-1633339 | MS.gene27027:CDS |
| GCAAAAGCACGGTCAAAAGT+TGG | 0.456115 | 1.3:-1631775 | MS.gene27027:CDS |
| GCTTCGATACTAAGTTCAGT+TGG | 0.459077 | 1.3:+1631870 | None:intergenic |
| ACATGGTAATGCTCCCAAAT+GGG | 0.461570 | 1.3:-1632133 | MS.gene27027:CDS |
| GAAGTAGAAGCCACAATCCT+TGG | 0.461659 | 1.3:+1631804 | None:intergenic |
| CCCAAATCCAACATGGGTTG+TGG | 0.465400 | 1.3:-1632186 | MS.gene27027:CDS |
| ATGATAATCTGACGTCCGTC+GGG | 0.466571 | 1.3:+1633342 | None:intergenic |
| CAAAAGCACGGTCAAAAGTT+GGG | 0.467287 | 1.3:-1631774 | MS.gene27027:CDS |
| CCTGAGCTTGGATAACTCCT+AGG | 0.467424 | 1.3:+1632365 | None:intergenic |
| TCCGTTGGGTAAAGGGAGCT+TGG | 0.468205 | 1.3:+1633647 | None:intergenic |
| TTGTAACAATTGTGATTGGC+AGG | 0.468700 | 1.3:-1633418 | MS.gene27027:CDS |
| GAGGAGATAGGTGGTGGTGG+TGG | 0.471284 | 1.3:+1633836 | None:intergenic |
| GACCGAATGAGCCGTGCAAT+CGG | 0.472666 | 1.3:+1633587 | None:intergenic |
| GACATGGTAATGCTCCCAAA+TGG | 0.475435 | 1.3:-1632134 | MS.gene27027:CDS |
| TGTGATTGGCAGGAATTTGA+CGG | 0.477752 | 1.3:-1633408 | MS.gene27027:CDS |
| GTTATCCAAGCTCAGGTTCA+GGG | 0.478365 | 1.3:-1632358 | MS.gene27027:CDS |
| TCCGGTTCGGTGAATCCTAA+AGG | 0.479007 | 1.3:-1633501 | MS.gene27027:CDS |
| AAATCCCAGGTGGGGACCCT+AGG | 0.479903 | 1.3:-1632382 | MS.gene27027:CDS |
| CGGGTTCGGGGACAGCAGGG+TGG | 0.481834 | 1.3:-1632088 | MS.gene27027:CDS |
| CATGCCTAGGGCTAGAGTAA+TGG | 0.483226 | 1.3:-1632159 | MS.gene27027:CDS |
| AATCCAGGAGGTGCAAGAAT+AGG | 0.486846 | 1.3:+1631573 | None:intergenic |
| AAACAAAGTGAATAATGTGC+AGG | 0.487243 | 1.3:-1631634 | MS.gene27027:CDS |
| TAACTCCTAGGGTCCCCACC+TGG | 0.487338 | 1.3:+1632377 | None:intergenic |
| TGATATTGAGGTTACTATGC+CGG | 0.487729 | 1.3:-1631601 | MS.gene27027:CDS |
| TGTTTGTTCAAACTGACGTT+TGG | 0.489066 | 1.3:-1633530 | MS.gene27027:CDS |
| CAGCTGCGGCTACCAAAGAT+GGG | 0.491660 | 1.3:+1633775 | None:intergenic |
| TTTGGTATATGTTACGATGT+TGG | 0.495056 | 1.3:-1631715 | MS.gene27027:CDS |
| GTCTCCATCGTTGTAGCCAC+CGG | 0.495723 | 1.3:+1633464 | None:intergenic |
| TCCTTTAGGATTCACCGAAC+CGG | 0.496066 | 1.3:+1633500 | None:intergenic |
| AAGGAAGAGGAGATAGGTGG+TGG | 0.499045 | 1.3:+1633830 | None:intergenic |
| GGGTTCGGGGACAGCAGGGT+GGG | 0.499402 | 1.3:-1632087 | MS.gene27027:CDS |
| CTTCGATACTAAGTTCAGTT+GGG | 0.500695 | 1.3:+1631871 | None:intergenic |
| ATACTTGTAACAATTGTGAT+TGG | 0.501433 | 1.3:-1633422 | MS.gene27027:CDS |
| AGTACCCCTGAACCTGAGCT+TGG | 0.503306 | 1.3:+1632353 | None:intergenic |
| ACGGACGTCAGATTATCATT+GGG | 0.504627 | 1.3:-1633338 | MS.gene27027:CDS |
| TCATGACGACACTTTCCGTT+GGG | 0.507837 | 1.3:+1633633 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.507956 | 1.3:-1632281 | MS.gene27027:CDS |
| TGAGAATTGGAAGAAGGAAG+AGG | 0.508192 | 1.3:+1633817 | None:intergenic |
| CATTCGCGAAGCGAGGTTCA+AGG | 0.515507 | 1.3:+1631832 | None:intergenic |
| TGTATCCAAATTCCTTCACT+AGG | 0.522963 | 1.3:+1631519 | None:intergenic |
| TATCAAACATACGAATGGTT+CGG | 0.523167 | 1.3:+1633442 | None:intergenic |
| TATCCTCTTTGACTATACTA+AGG | 0.523749 | 1.3:-1633148 | MS.gene27027:intron |
| TTCCATGAATCAGAGGTTGT+TGG | 0.524137 | 1.3:-1631667 | MS.gene27027:CDS |
| TTGTTATGAGAATTGGAAGA+AGG | 0.524866 | 1.3:+1633811 | None:intergenic |
| GAAGAGGAGATAGGTGGTGG+TGG | 0.525822 | 1.3:+1633833 | None:intergenic |
| GAATGTTCGTCCAAGGATTG+TGG | 0.526224 | 1.3:-1631814 | MS.gene27027:CDS |
| ATCAAAGTTTATACAAGCTG+AGG | 0.526362 | 1.3:-1632309 | MS.gene27027:CDS |
| TCCGTCGGGCAGAATATGAT+TGG | 0.527723 | 1.3:+1633356 | None:intergenic |
| ATTTCAAGTAAAAGCAACAT+TGG | 0.531009 | 1.3:-1631745 | MS.gene27027:CDS |
| AAGCGAGGTTCAAGGTAAGA+AGG | 0.532513 | 1.3:+1631840 | None:intergenic |
| GCGGACTTGCTGCTCGGAGA+TGG | 0.534369 | 1.3:-1633386 | MS.gene27027:CDS |
| GATATTGAGGTTACTATGCC+GGG | 0.535099 | 1.3:-1631600 | MS.gene27027:CDS |
| CAGACCGGTGGCTACAACGA+TGG | 0.536809 | 1.3:-1633468 | MS.gene27027:CDS |
| GAATCAGAGGTTGTTGGTGT+TGG | 0.537446 | 1.3:-1631661 | MS.gene27027:CDS |
| CCTAGGAGTTATCCAAGCTC+AGG | 0.540194 | 1.3:-1632365 | MS.gene27027:CDS |
| AACTCCTAGGGTCCCCACCT+GGG | 0.542708 | 1.3:+1632378 | None:intergenic |
| GTCATGACGACACTTTCCGT+TGG | 0.543988 | 1.3:+1633632 | None:intergenic |
| GCGAGACCCAGTTCTAAATC+CGG | 0.547300 | 1.3:-1632057 | MS.gene27027:CDS |
| GGGAACAACATATGATATTG+AGG | 0.552074 | 1.3:-1631613 | MS.gene27027:CDS |
| TGTTGTTAGCAAAGATGAAG+AGG | 0.554181 | 1.3:+1633175 | None:intergenic |
| TACATTCGAGGCGTATGAGA+TGG | 0.557294 | 1.3:+1631984 | None:intergenic |
| TTGACGGCGGACTTGCTGCT+CGG | 0.557612 | 1.3:-1633392 | MS.gene27027:CDS |
| CTACCTTAGTATAGTCAAAG+AGG | 0.562748 | 1.3:+1633145 | None:intergenic |
| ACAAATAGCAGATAAAATCC+AGG | 0.565016 | 1.3:+1631558 | None:intergenic |
| AACCCATGTTGGATTTGGGT+CGG | 0.566702 | 1.3:+1632190 | None:intergenic |
| TAAAATTGTAACCAATATGA+GGG | 0.567574 | 1.3:+1631907 | None:intergenic |
| AAAGAACCGGATTTAGAACT+GGG | 0.569963 | 1.3:+1632051 | None:intergenic |
| TTGGAACAGACTAATGATGC+TGG | 0.570563 | 1.3:-1633246 | MS.gene27027:CDS |
| CATAAAGAAATTCCTAGTGA+AGG | 0.570695 | 1.3:-1631531 | MS.gene27027:CDS |
| CACCGTTAAAACCGATTGCA+CGG | 0.572292 | 1.3:-1633598 | MS.gene27027:CDS |
| AAACAATGGACGGAAAGTGT+TGG | 0.572611 | 1.3:+1633548 | None:intergenic |
| TCACCCATTACTCTAGCCCT+AGG | 0.572852 | 1.3:+1632155 | None:intergenic |
| GCTTCGCGAATGTTCGTCCA+AGG | 0.576507 | 1.3:-1631821 | MS.gene27027:CDS |
| GATGGTAGGGTTCTTGTTGG+TGG | 0.579283 | 1.3:-1631936 | MS.gene27027:CDS |
| AATGATAATCTGACGTCCGT+CGG | 0.588364 | 1.3:+1633341 | None:intergenic |
| GTCGGGCAGAATATGATTGG+TGG | 0.588441 | 1.3:+1633359 | None:intergenic |
| TAATTAATGGAGCGGGTTCG+GGG | 0.591461 | 1.3:-1632100 | MS.gene27027:CDS |
| GGCTACCAAAGATGGGGTGG+TGG | 0.592290 | 1.3:+1633782 | None:intergenic |
| GGCTAGAGTAATGGGTGACA+TGG | 0.592897 | 1.3:-1632150 | MS.gene27027:CDS |
| GGGTTGTGGAGACCATGCCT+AGG | 0.592998 | 1.3:-1632172 | MS.gene27027:CDS |
| GAGCGGGTTCGGGGACAGCA+GGG | 0.594837 | 1.3:-1632091 | MS.gene27027:CDS |
| TAACCGACCCAAATCCAACA+TGG | 0.597315 | 1.3:-1632193 | MS.gene27027:CDS |
| AGAACATTTCCTCAAATCCC+AGG | 0.598634 | 1.3:-1632395 | MS.gene27027:CDS |
| TCCAAGCTCCCTTTACCCAA+CGG | 0.604138 | 1.3:-1633648 | MS.gene27027:CDS |
| AAAGGAACACTTGTCCAGAC+CGG | 0.605527 | 1.3:-1633483 | MS.gene27027:CDS |
| TGGTAGCCGCAGCTGGACAA+TGG | 0.606010 | 1.3:-1633767 | MS.gene27027:CDS |
| TGCGGCTACCAAAGATGGGG+TGG | 0.606891 | 1.3:+1633779 | None:intergenic |
| GCAGTGGAATGATACATTCG+AGG | 0.606915 | 1.3:+1631972 | None:intergenic |
| CAGTTTGAACAAACAATGGA+CGG | 0.608679 | 1.3:+1633538 | None:intergenic |
| AACAAAGTGAATAATGTGCA+GGG | 0.608995 | 1.3:-1631633 | MS.gene27027:CDS |
| AAGAAGGAAGAGGAGATAGG+TGG | 0.613810 | 1.3:+1633827 | None:intergenic |
| CTGAGCTTGGATAACTCCTA+GGG | 0.614436 | 1.3:+1632366 | None:intergenic |
| ACGTCAGTTTGAACAAACAA+TGG | 0.614768 | 1.3:+1633534 | None:intergenic |
| CAAATTTAACTAGAATGTAG+TGG | 0.615118 | 1.3:-1632420 | MS.gene27027:intron |
| GTGAAGAAGTTGCATGTGCA+TGG | 0.615355 | 1.3:+1633713 | None:intergenic |
| ACAAGTATCAAACATACGAA+TGG | 0.619375 | 1.3:+1633437 | None:intergenic |
| GGTTGTGGAGACCATGCCTA+GGG | 0.621634 | 1.3:-1632171 | MS.gene27027:CDS |
| GGACGAACATTCGCGAAGCG+AGG | 0.625391 | 1.3:+1631825 | None:intergenic |
| ATCACGAACCAAAATTGCAG+TGG | 0.632842 | 1.3:+1631956 | None:intergenic |
| ATGGTCTCCACAACCCATGT+TGG | 0.632893 | 1.3:+1632179 | None:intergenic |
| CATTTCCTCAAATCCCAGGT+GGG | 0.633836 | 1.3:-1632391 | MS.gene27027:CDS |
| ACCAATCATATTCTGCCCGA+CGG | 0.637737 | 1.3:-1633357 | MS.gene27027:CDS |
| AACCGACCCAAATCCAACAT+GGG | 0.637839 | 1.3:-1632192 | MS.gene27027:CDS |
| ATTTCCTCAAATCCCAGGTG+GGG | 0.639095 | 1.3:-1632390 | MS.gene27027:CDS |
| GGTGCAAGAATAGGTGAACC+CGG | 0.641982 | 1.3:+1631582 | None:intergenic |
| TTATCCAAGCTCAGGTTCAG+GGG | 0.643701 | 1.3:-1632357 | MS.gene27027:CDS |
| ACTTCGGAACTGCAAAAGCA+CGG | 0.645621 | 1.3:-1631786 | MS.gene27027:CDS |
| CATGGTAATGCTCCCAAATG+GGG | 0.649064 | 1.3:-1632132 | MS.gene27027:CDS |
| CATTACTCTAGCCCTAGGCA+TGG | 0.651243 | 1.3:+1632160 | None:intergenic |
| AGCTGCGGCTACCAAAGATG+GGG | 0.651533 | 1.3:+1633776 | None:intergenic |
| CGGACGTCAGATTATCATTG+GGG | 0.661128 | 1.3:-1633337 | MS.gene27027:CDS |
| GGAACACTTGTCCAGACCGG+TGG | 0.665244 | 1.3:-1633480 | MS.gene27027:CDS |
| TACTTGCCATTGTCCAGCTG+CGG | 0.669654 | 1.3:+1633761 | None:intergenic |
| ACATTTCCTCAAATCCCAGG+TGG | 0.682481 | 1.3:-1632392 | MS.gene27027:CDS |
| AATGAGTGTGTGTTAAAAGG+TGG | 0.707159 | 1.3:+1631690 | None:intergenic |
| GGACGTCAGATTATCATTGG+GGG | 0.730353 | 1.3:-1633336 | MS.gene27027:CDS |
| AATAGCAGATAAAATCCAGG+AGG | 0.735992 | 1.3:+1631561 | None:intergenic |
| GATTGGCAGGAATTTGACGG+CGG | 0.737585 | 1.3:-1633405 | MS.gene27027:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAACTGTGTTTTATTA+TGG | - | chr1.3:1632615-1632634 | MS.gene27027:intron | 15.0% |
| !!! | TTGTGGTTTTAATTATTATT+TGG | - | chr1.3:1632305-1632324 | MS.gene27027:CDS | 15.0% |
| !! | ATAAAATTGTAACCAATATG+AGG | + | chr1.3:1633446-1633465 | None:intergenic | 20.0% |
| !! | TAAAATTGTAACCAATATGA+GGG | + | chr1.3:1633445-1633464 | None:intergenic | 20.0% |
| !! | TACAAAACTAATAACGTAAT+CGG | - | chr1.3:1633320-1633339 | MS.gene27027:CDS | 20.0% |
| !! | TCAAATTCATAATTTGAACA+TGG | - | chr1.3:1632482-1632501 | MS.gene27027:intron | 20.0% |
| !!! | TAGTAAATGTTTTTCATTTG+TGG | - | chr1.3:1632288-1632307 | MS.gene27027:CDS | 20.0% |
| !!! | TTATTAGTTTTGTAAAGAAC+CGG | + | chr1.3:1633314-1633333 | None:intergenic | 20.0% |
| ! | ATACTTGTAACAATTGTGAT+TGG | - | chr1.3:1631927-1631946 | MS.gene27027:CDS | 25.0% |
| ! | CAAATTTAACTAGAATGTAG+TGG | - | chr1.3:1632929-1632948 | MS.gene27027:intron | 25.0% |
| ! | TTTGATTGTAGATTCTTCAA+TGG | + | chr1.3:1633026-1633045 | None:intergenic | 25.0% |
| !! | ACTTTGCATTATGTTTGTTA+AGG | - | chr1.3:1632234-1632253 | MS.gene27027:CDS | 25.0% |
| !! | ATTTCAAGTAAAAGCAACAT+TGG | - | chr1.3:1633604-1633623 | MS.gene27027:CDS | 25.0% |
| !!! | ACTTTTAATTTTTGCTACGT+TGG | - | chr1.3:1632880-1632899 | MS.gene27027:intron | 25.0% |
| !!! | CTGTGTTTTATTATGGTATA+TGG | - | chr1.3:1632622-1632641 | MS.gene27027:intron | 25.0% |
| AAACAAAGTGAATAATGTGC+AGG | - | chr1.3:1633715-1633734 | MS.gene27027:CDS | 30.0% | |
| AAACTTATGTCTTTCTTCGA+AGG | - | chr1.3:1632535-1632554 | MS.gene27027:intron | 30.0% | |
| AAATTCCTAGTGAAGGAATT+TGG | - | chr1.3:1633825-1633844 | MS.gene27027:CDS | 30.0% | |
| AACAAAGTGAATAATGTGCA+GGG | - | chr1.3:1633716-1633735 | MS.gene27027:CDS | 30.0% | |
| ACAAATAGCAGATAAAATCC+AGG | + | chr1.3:1633794-1633813 | None:intergenic | 30.0% | |
| ACAAGTATCAAACATACGAA+TGG | + | chr1.3:1631915-1631934 | None:intergenic | 30.0% | |
| ACATAAGTTTGGTCTCATAA+GGG | + | chr1.3:1632525-1632544 | None:intergenic | 30.0% | |
| AGCAACATTGGATAAGAATT+TGG | - | chr1.3:1633616-1633635 | MS.gene27027:CDS | 30.0% | |
| ATCAAAGTTTATACAAGCTG+AGG | - | chr1.3:1633040-1633059 | MS.gene27027:intron | 30.0% | |
| CATAAAGAAATTCCTAGTGA+AGG | - | chr1.3:1633818-1633837 | MS.gene27027:CDS | 30.0% | |
| GAAAATGAGTGTGTGTTAAA+AGG | + | chr1.3:1633665-1633684 | None:intergenic | 30.0% | |
| TATCAAACATACGAATGGTT+CGG | + | chr1.3:1631910-1631929 | None:intergenic | 30.0% | |
| TATCCTCTTTGACTATACTA+AGG | - | chr1.3:1632201-1632220 | MS.gene27027:CDS | 30.0% | |
| TCCACATTGAGAAAAACAAA+TGG | + | chr1.3:1632148-1632167 | None:intergenic | 30.0% | |
| TTCGAAGAAAGACATAAGTT+TGG | + | chr1.3:1632536-1632555 | None:intergenic | 30.0% | |
| TTGTTATGAGAATTGGAAGA+AGG | + | chr1.3:1631541-1631560 | None:intergenic | 30.0% | |
| TTTGGTATATGTTACGATGT+TGG | - | chr1.3:1633634-1633653 | MS.gene27027:CDS | 30.0% | |
| ! | GCTTTTTGATAAGATCCTTT+TGG | + | chr1.3:1633086-1633105 | None:intergenic | 30.0% |
| ! | GTGATTGTTGTTATGAGAAT+TGG | + | chr1.3:1631548-1631567 | None:intergenic | 30.0% |
| ! | TCATTAGTCTGTTCCAAAAA+CGG | + | chr1.3:1632100-1632119 | None:intergenic | 30.0% |
| ! | TTTTACCCTAAAAACGACAA+TGG | - | chr1.3:1632058-1632077 | MS.gene27027:CDS | 30.0% |
| !! | ATATTTGATCGTACTGACTT+TGG | - | chr1.3:1631674-1631693 | MS.gene27027:CDS | 30.0% |
| !! | CGTTTTGATAATTAATGGAG+CGG | - | chr1.3:1633241-1633260 | MS.gene27027:CDS | 30.0% |
| !! | GATCTTATCAAAAAGCATCA+AGG | - | chr1.3:1633090-1633109 | MS.gene27027:intron | 30.0% |
| !! | GTTTTGATAATTAATGGAGC+GGG | - | chr1.3:1633242-1633261 | MS.gene27027:CDS | 30.0% |
| !! | TCCATTTGTTTTTCTCAATG+TGG | - | chr1.3:1632144-1632163 | MS.gene27027:CDS | 30.0% |
| !! | TGGATTTTATCTGCTATTTG+TGG | - | chr1.3:1633793-1633812 | MS.gene27027:CDS | 30.0% |
| !! | TTTGTTTTTCTCAATGTGGA+TGG | - | chr1.3:1632148-1632167 | MS.gene27027:CDS | 30.0% |
| AATAGCAGATAAAATCCAGG+AGG | + | chr1.3:1633791-1633810 | None:intergenic | 35.0% | |
| AATGAGTGTGTGTTAAAAGG+TGG | + | chr1.3:1633662-1633681 | None:intergenic | 35.0% | |
| ACGTCAGTTTGAACAAACAA+TGG | + | chr1.3:1631818-1631837 | None:intergenic | 35.0% | |
| ATTATCAAAACGTCCCCATT+TGG | + | chr1.3:1633233-1633252 | None:intergenic | 35.0% | |
| CAGTTTGAACAAACAATGGA+CGG | + | chr1.3:1631814-1631833 | None:intergenic | 35.0% | |
| CTACCTTAGTATAGTCAAAG+AGG | + | chr1.3:1632207-1632226 | None:intergenic | 35.0% | |
| CTTCGATACTAAGTTCAGTT+GGG | + | chr1.3:1633481-1633500 | None:intergenic | 35.0% | |
| GACATAAGTTTGGTCTCATA+AGG | + | chr1.3:1632526-1632545 | None:intergenic | 35.0% | |
| GGGAACAACATATGATATTG+AGG | - | chr1.3:1633736-1633755 | MS.gene27027:CDS | 35.0% | |
| TGATATTGAGGTTACTATGC+CGG | - | chr1.3:1633748-1633767 | MS.gene27027:CDS | 35.0% | |
| TGTATCCAAATTCCTTCACT+AGG | + | chr1.3:1633833-1633852 | None:intergenic | 35.0% | |
| TGTTGTTAGCAAAGATGAAG+AGG | + | chr1.3:1632177-1632196 | None:intergenic | 35.0% | |
| TGTTTGTTCAAACTGACGTT+TGG | - | chr1.3:1631819-1631838 | MS.gene27027:CDS | 35.0% | |
| TTATCAAAACGTCCCCATTT+GGG | + | chr1.3:1633232-1633251 | None:intergenic | 35.0% | |
| TTGTAACAATTGTGATTGGC+AGG | - | chr1.3:1631931-1631950 | MS.gene27027:CDS | 35.0% | |
| ! | AAAGAACCGGATTTAGAACT+GGG | + | chr1.3:1633301-1633320 | None:intergenic | 35.0% |
| ! | ACTCATTTTCCATGAATCAG+AGG | - | chr1.3:1633675-1633694 | MS.gene27027:CDS | 35.0% |
| ! | CAAGTACTGCAAAAAAGCAT+CGG | - | chr1.3:1631605-1631624 | MS.gene27027:CDS | 35.0% |
| ! | CTTTTAATGCATGTCCTCAA+AGG | - | chr1.3:1632821-1632840 | MS.gene27027:intron | 35.0% |
| ! | GTATCATTCCACTGCAATTT+TGG | - | chr1.3:1633385-1633404 | MS.gene27027:CDS | 35.0% |
| ! | TAAAGAACCGGATTTAGAAC+TGG | + | chr1.3:1633302-1633321 | None:intergenic | 35.0% |
| !! | GGGGACGTTTTGATAATTAA+TGG | - | chr1.3:1633236-1633255 | MS.gene27027:CDS | 35.0% |
| !!! | AATTTTGGTTCGTGATGGTA+GGG | - | chr1.3:1633400-1633419 | MS.gene27027:CDS | 35.0% |
| !!! | ACACTTAGTTTTGACCTTTG+AGG | + | chr1.3:1632838-1632857 | None:intergenic | 35.0% |
| !!! | TAGCACCATTGTCGTTTTTA+GGG | + | chr1.3:1632066-1632085 | None:intergenic | 35.0% |
| !!! | TTGGGTCGGTTATTTTGATT+CGG | + | chr1.3:1633148-1633167 | None:intergenic | 35.0% |
| AAGGATTGTGGCTTCTACTT+CGG | - | chr1.3:1633547-1633566 | MS.gene27027:CDS | 40.0% | |
| AATGATAATCTGACGTCCGT+CGG | + | chr1.3:1632011-1632030 | None:intergenic | 40.0% | |
| ACGGACGTCAGATTATCATT+GGG | - | chr1.3:1632011-1632030 | MS.gene27027:CDS | 40.0% | |
| AGAACATTTCCTCAAATCCC+AGG | - | chr1.3:1632954-1632973 | MS.gene27027:intron | 40.0% | |
| ATCACGAACCAAAATTGCAG+TGG | + | chr1.3:1633396-1633415 | None:intergenic | 40.0% | |
| GATATTGAGGTTACTATGCC+GGG | - | chr1.3:1633749-1633768 | MS.gene27027:CDS | 40.0% | |
| GCTTCGATACTAAGTTCAGT+TGG | + | chr1.3:1633482-1633501 | None:intergenic | 40.0% | |
| TGAGAATTGGAAGAAGGAAG+AGG | + | chr1.3:1631535-1631554 | None:intergenic | 40.0% | |
| TGTGATTGGCAGGAATTTGA+CGG | - | chr1.3:1631941-1631960 | MS.gene27027:CDS | 40.0% | |
| TTCCATGAATCAGAGGTTGT+TGG | - | chr1.3:1633682-1633701 | MS.gene27027:CDS | 40.0% | |
| TTGGAACAGACTAATGATGC+TGG | - | chr1.3:1632103-1632122 | MS.gene27027:CDS | 40.0% | |
| ! | AAACAATGGACGGAAAGTGT+TGG | + | chr1.3:1631804-1631823 | None:intergenic | 40.0% |
| ! | ACATGGTAATGCTCCCAAAT+GGG | - | chr1.3:1633216-1633235 | MS.gene27027:CDS | 40.0% |
| ! | ATAATTAATGGAGCGGGTTC+GGG | - | chr1.3:1633248-1633267 | MS.gene27027:CDS | 40.0% |
| ! | CAAAAGCACGGTCAAAAGTT+GGG | - | chr1.3:1633575-1633594 | MS.gene27027:CDS | 40.0% |
| ! | GATAATTAATGGAGCGGGTT+CGG | - | chr1.3:1633247-1633266 | MS.gene27027:CDS | 40.0% |
| ! | TTTTAACGGTGGTTTCTCTG+GGG | + | chr1.3:1631742-1631761 | None:intergenic | 40.0% |
| !! | GTTTTAACGGTGGTTTCTCT+GGG | + | chr1.3:1631743-1631762 | None:intergenic | 40.0% |
| !!! | ACTGCAATTTTGGTTCGTGA+TGG | - | chr1.3:1633395-1633414 | MS.gene27027:CDS | 40.0% |
| !!! | CAAGCTGAGGTTTTGATTTG+TGG | - | chr1.3:1633053-1633072 | MS.gene27027:intron | 40.0% |
| !!! | CAATTTTGGTTCGTGATGGT+AGG | - | chr1.3:1633399-1633418 | MS.gene27027:CDS | 40.0% |
| !!! | GTAGCACCATTGTCGTTTTT+AGG | + | chr1.3:1632067-1632086 | None:intergenic | 40.0% |
| !!! | TACAGTTCGTTTGCCGTTTT+TGG | - | chr1.3:1632084-1632103 | MS.gene27027:CDS | 40.0% |
| !!! | TGGGTCGGTTATTTTGATTC+GGG | + | chr1.3:1633147-1633166 | None:intergenic | 40.0% |
| AAAGGAACACTTGTCCAGAC+CGG | - | chr1.3:1631866-1631885 | MS.gene27027:CDS | 45.0% | |
| AACCCATGTTGGATTTGGGT+CGG | + | chr1.3:1633162-1633181 | None:intergenic | 45.0% | |
| AACCGACCCAAATCCAACAT+GGG | - | chr1.3:1633157-1633176 | MS.gene27027:CDS | 45.0% | |
| AAGAAGGAAGAGGAGATAGG+TGG | + | chr1.3:1631525-1631544 | None:intergenic | 45.0% | |
| AAGCGAGGTTCAAGGTAAGA+AGG | + | chr1.3:1633512-1633531 | None:intergenic | 45.0% | |
| ACATTTCCTCAAATCCCAGG+TGG | - | chr1.3:1632957-1632976 | MS.gene27027:intron | 45.0% | |
| ACCAATCATATTCTGCCCGA+CGG | - | chr1.3:1631992-1632011 | MS.gene27027:CDS | 45.0% | |
| ACTTCGGAACTGCAAAAGCA+CGG | - | chr1.3:1633563-1633582 | MS.gene27027:CDS | 45.0% | |
| AGTTATCCAAGCTCAGGTTC+AGG | - | chr1.3:1632990-1633009 | MS.gene27027:intron | 45.0% | |
| ATGATAATCTGACGTCCGTC+GGG | + | chr1.3:1632010-1632029 | None:intergenic | 45.0% | |
| ATGCCTAGGGCTAGAGTAAT+GGG | - | chr1.3:1633191-1633210 | MS.gene27027:CDS | 45.0% | |
| ATTTCCTCAAATCCCAGGTG+GGG | - | chr1.3:1632959-1632978 | MS.gene27027:intron | 45.0% | |
| CACCAACAACCTCTGATTCA+TGG | + | chr1.3:1633687-1633706 | None:intergenic | 45.0% | |
| CACCGTTAAAACCGATTGCA+CGG | - | chr1.3:1631751-1631770 | MS.gene27027:CDS | 45.0% | |
| CATTTCCTCAAATCCCAGGT+GGG | - | chr1.3:1632958-1632977 | MS.gene27027:intron | 45.0% | |
| CCACAACCCATGTTGGATTT+GGG | + | chr1.3:1633166-1633185 | None:intergenic | 45.0% | |
| CGGACGTCAGATTATCATTG+GGG | - | chr1.3:1632012-1632031 | MS.gene27027:CDS | 45.0% | |
| CTGAGCTTGGATAACTCCTA+GGG | + | chr1.3:1632986-1633005 | None:intergenic | 45.0% | |
| GAAGTAGAAGCCACAATCCT+TGG | + | chr1.3:1633548-1633567 | None:intergenic | 45.0% | |
| GAATCAGAGGTTGTTGGTGT+TGG | - | chr1.3:1633688-1633707 | MS.gene27027:CDS | 45.0% | |
| GAATGTTCGTCCAAGGATTG+TGG | - | chr1.3:1633535-1633554 | MS.gene27027:CDS | 45.0% | |
| GACACTTTCCGTTGGGTAAA+GGG | + | chr1.3:1631712-1631731 | None:intergenic | 45.0% | |
| GACGGACGTCAGATTATCAT+TGG | - | chr1.3:1632010-1632029 | MS.gene27027:CDS | 45.0% | |
| GCAGTGGAATGATACATTCG+AGG | + | chr1.3:1633380-1633399 | None:intergenic | 45.0% | |
| GGACGTCAGATTATCATTGG+GGG | - | chr1.3:1632013-1632032 | MS.gene27027:CDS | 45.0% | |
| GTCTGGACAAGTGTTCCTTT+AGG | + | chr1.3:1631866-1631885 | None:intergenic | 45.0% | |
| GTGAAGAAGTTGCATGTGCA+TGG | + | chr1.3:1631639-1631658 | None:intergenic | 45.0% | |
| GTTATCCAAGCTCAGGTTCA+GGG | - | chr1.3:1632991-1633010 | MS.gene27027:intron | 45.0% | |
| TAACCGACCCAAATCCAACA+TGG | - | chr1.3:1633156-1633175 | MS.gene27027:CDS | 45.0% | |
| TACATTCGAGGCGTATGAGA+TGG | + | chr1.3:1633368-1633387 | None:intergenic | 45.0% | |
| TCATGACGACACTTTCCGTT+GGG | + | chr1.3:1631719-1631738 | None:intergenic | 45.0% | |
| TCCACAACCCATGTTGGATT+TGG | + | chr1.3:1633167-1633186 | None:intergenic | 45.0% | |
| TGGAAGAAGGAAGAGGAGAT+AGG | + | chr1.3:1631528-1631547 | None:intergenic | 45.0% | |
| TTATCCAAGCTCAGGTTCAG+GGG | - | chr1.3:1632992-1633011 | MS.gene27027:intron | 45.0% | |
| ! | AATCCAGGAGGTGCAAGAAT+AGG | + | chr1.3:1633779-1633798 | None:intergenic | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | - | chr1.3:1633068-1633087 | MS.gene27027:intron | 45.0% |
| ! | CATGGTAATGCTCCCAAATG+GGG | - | chr1.3:1633217-1633236 | MS.gene27027:CDS | 45.0% |
| ! | GACATGGTAATGCTCCCAAA+TGG | - | chr1.3:1633215-1633234 | MS.gene27027:CDS | 45.0% |
| ! | GCAAAAGCACGGTCAAAAGT+TGG | - | chr1.3:1633574-1633593 | MS.gene27027:CDS | 45.0% |
| ! | TAATTAATGGAGCGGGTTCG+GGG | - | chr1.3:1633249-1633268 | MS.gene27027:CDS | 45.0% |
| !! | ACTGACGTTTGGTGTTCTTC+CGG | - | chr1.3:1631830-1631849 | MS.gene27027:CDS | 45.0% |
| !! | AGCCGTGCAATCGGTTTTAA+CGG | + | chr1.3:1631756-1631775 | None:intergenic | 45.0% |
| !! | GCAAAAAAGCATCGGCATTG+TGG | - | chr1.3:1631613-1631632 | MS.gene27027:CDS | 45.0% |
| !! | GGTTTTAACGGTGGTTTCTC+TGG | + | chr1.3:1631744-1631763 | None:intergenic | 45.0% |
| !! | TCCTTTAGGATTCACCGAAC+CGG | + | chr1.3:1631852-1631871 | None:intergenic | 45.0% |
| !!! | GCTGAGGTTTTGATTTGTGG+TGG | - | chr1.3:1633056-1633075 | MS.gene27027:intron | 45.0% |
| AACCGATTGCACGGCTCATT+CGG | - | chr1.3:1631760-1631779 | MS.gene27027:CDS | 50.0% | |
| AAGGAAGAGGAGATAGGTGG+TGG | + | chr1.3:1631522-1631541 | None:intergenic | 50.0% | |
| AATCACCACCACCCCATCTT+TGG | - | chr1.3:1631562-1631581 | MS.gene27027:CDS | 50.0% | |
| ATGGTCTCCACAACCCATGT+TGG | + | chr1.3:1633173-1633192 | None:intergenic | 50.0% | |
| CATGCCTAGGGCTAGAGTAA+TGG | - | chr1.3:1633190-1633209 | MS.gene27027:CDS | 50.0% | |
| CATTACTCTAGCCCTAGGCA+TGG | + | chr1.3:1633192-1633211 | None:intergenic | 50.0% | |
| CCTAGGAGTTATCCAAGCTC+AGG | - | chr1.3:1632984-1633003 | MS.gene27027:intron | 50.0% | |
| CCTGAGCTTGGATAACTCCT+AGG | + | chr1.3:1632987-1633006 | None:intergenic | 50.0% | |
| CGACACTTTCCGTTGGGTAA+AGG | + | chr1.3:1631713-1631732 | None:intergenic | 50.0% | |
| CGTGATGGTAGGGTTCTTGT+TGG | - | chr1.3:1633410-1633429 | MS.gene27027:CDS | 50.0% | |
| GATGGTAGGGTTCTTGTTGG+TGG | - | chr1.3:1633413-1633432 | MS.gene27027:CDS | 50.0% | |
| GATTGGCAGGAATTTGACGG+CGG | - | chr1.3:1631944-1631963 | MS.gene27027:CDS | 50.0% | |
| GCATCAAGGCGTGAGTTTCT+TGG | - | chr1.3:1633104-1633123 | MS.gene27027:intron | 50.0% | |
| GGTGCAAGAATAGGTGAACC+CGG | + | chr1.3:1633770-1633789 | None:intergenic | 50.0% | |
| GGTGGTAGCAACCCTCATAT+TGG | - | chr1.3:1633431-1633450 | MS.gene27027:CDS | 50.0% | |
| GTCATGACGACACTTTCCGT+TGG | + | chr1.3:1631720-1631739 | None:intergenic | 50.0% | |
| GTCGGGCAGAATATGATTGG+TGG | + | chr1.3:1631993-1632012 | None:intergenic | 50.0% | |
| TACTTGCCATTGTCCAGCTG+CGG | + | chr1.3:1631591-1631610 | None:intergenic | 50.0% | |
| TCACCCATTACTCTAGCCCT+AGG | + | chr1.3:1633197-1633216 | None:intergenic | 50.0% | |
| TCACCTATTCTTGCACCTCC+TGG | - | chr1.3:1633773-1633792 | MS.gene27027:CDS | 50.0% | |
| TCCAAGCTCCCTTTACCCAA+CGG | - | chr1.3:1631701-1631720 | MS.gene27027:CDS | 50.0% | |
| TCCGTCGGGCAGAATATGAT+TGG | + | chr1.3:1631996-1632015 | None:intergenic | 50.0% | |
| ! | CCCAAATCCAACATGGGTTG+TGG | - | chr1.3:1633163-1633182 | MS.gene27027:CDS | 50.0% |
| !! | CGTGCAATCGGTTTTAACGG+TGG | + | chr1.3:1631753-1631772 | None:intergenic | 50.0% |
| !! | CGTTTGGTGTTCTTCCGGTT+CGG | - | chr1.3:1631835-1631854 | MS.gene27027:CDS | 50.0% |
| !! | GCGAGACCCAGTTCTAAATC+CGG | - | chr1.3:1633292-1633311 | MS.gene27027:CDS | 50.0% |
| !! | GGCTAGAGTAATGGGTGACA+TGG | - | chr1.3:1633199-1633218 | MS.gene27027:CDS | 50.0% |
| !! | TCCGGTTCGGTGAATCCTAA+AGG | - | chr1.3:1631848-1631867 | MS.gene27027:CDS | 50.0% |
| AGCTGCGGCTACCAAAGATG+GGG | + | chr1.3:1631576-1631595 | None:intergenic | 55.0% | |
| AGTACCCCTGAACCTGAGCT+TGG | + | chr1.3:1632999-1633018 | None:intergenic | 55.0% | |
| CAGCTGCGGCTACCAAAGAT+GGG | + | chr1.3:1631577-1631596 | None:intergenic | 55.0% | |
| CATTCGCGAAGCGAGGTTCA+AGG | + | chr1.3:1633520-1633539 | None:intergenic | 55.0% | |
| GACCGAATGAGCCGTGCAAT+CGG | + | chr1.3:1631765-1631784 | None:intergenic | 55.0% | |
| GCTTCGCGAATGTTCGTCCA+AGG | - | chr1.3:1633528-1633547 | MS.gene27027:CDS | 55.0% | |
| GGTTGTGGAGACCATGCCTA+GGG | - | chr1.3:1633178-1633197 | MS.gene27027:CDS | 55.0% | |
| GTCTCCATCGTTGTAGCCAC+CGG | + | chr1.3:1631888-1631907 | None:intergenic | 55.0% | |
| TCCGTTGGGTAAAGGGAGCT+TGG | + | chr1.3:1631705-1631724 | None:intergenic | 55.0% | |
| ! | GAAGAGGAGATAGGTGGTGG+TGG | + | chr1.3:1631519-1631538 | None:intergenic | 55.0% |
| AAATCCCAGGTGGGGACCCT+AGG | - | chr1.3:1632967-1632986 | MS.gene27027:intron | 60.0% | |
| AACTCCTAGGGTCCCCACCT+GGG | + | chr1.3:1632974-1632993 | None:intergenic | 60.0% | |
| CAGACCGGTGGCTACAACGA+TGG | - | chr1.3:1631881-1631900 | MS.gene27027:CDS | 60.0% | |
| CATCGTTGTAGCCACCGGTC+TGG | + | chr1.3:1631883-1631902 | None:intergenic | 60.0% | |
| CCAGCTGCGGCTACCAAAGA+TGG | + | chr1.3:1631578-1631597 | None:intergenic | 60.0% | |
| GGAACACTTGTCCAGACCGG+TGG | - | chr1.3:1631869-1631888 | MS.gene27027:CDS | 60.0% | |
| GGACAGCAGGGTGGGAATAC+GGG | - | chr1.3:1633270-1633289 | MS.gene27027:CDS | 60.0% | |
| GGACGAACATTCGCGAAGCG+AGG | + | chr1.3:1633527-1633546 | None:intergenic | 60.0% | |
| GGCTACCAAAGATGGGGTGG+TGG | + | chr1.3:1631570-1631589 | None:intergenic | 60.0% | |
| GGGACAGCAGGGTGGGAATA+CGG | - | chr1.3:1633269-1633288 | MS.gene27027:CDS | 60.0% | |
| GGGTTGTGGAGACCATGCCT+AGG | - | chr1.3:1633177-1633196 | MS.gene27027:CDS | 60.0% | |
| TAACTCCTAGGGTCCCCACC+TGG | + | chr1.3:1632975-1632994 | None:intergenic | 60.0% | |
| TGCGGCTACCAAAGATGGGG+TGG | + | chr1.3:1631573-1631592 | None:intergenic | 60.0% | |
| TGGTAGCCGCAGCTGGACAA+TGG | - | chr1.3:1631582-1631601 | MS.gene27027:CDS | 60.0% | |
| ! | CCATCTTTGGTAGCCGCAGC+TGG | - | chr1.3:1631575-1631594 | MS.gene27027:CDS | 60.0% |
| !! | GAGGAGATAGGTGGTGGTGG+TGG | + | chr1.3:1631516-1631535 | None:intergenic | 60.0% |
| !! | TTGACGGCGGACTTGCTGCT+CGG | - | chr1.3:1631957-1631976 | MS.gene27027:CDS | 60.0% |
| GGGTCCCCACCTGGGATTTG+AGG | + | chr1.3:1632966-1632985 | None:intergenic | 65.0% | |
| !! | GCGGACTTGCTGCTCGGAGA+TGG | - | chr1.3:1631963-1631982 | MS.gene27027:CDS | 65.0% |
| GGGTTCGGGGACAGCAGGGT+GGG | - | chr1.3:1633262-1633281 | MS.gene27027:CDS | 70.0% | |
| ! | GAGCGGGTTCGGGGACAGCA+GGG | - | chr1.3:1633258-1633277 | MS.gene27027:CDS | 70.0% |
| CGGGTTCGGGGACAGCAGGG+TGG | - | chr1.3:1633261-1633280 | MS.gene27027:CDS | 75.0% | |
| ! | GGAGCGGGTTCGGGGACAGC+AGG | - | chr1.3:1633257-1633276 | MS.gene27027:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1631509 | 1633862 | 1631509 | ID=MS.gene27027 |
| chr1.3 | mRNA | 1631509 | 1633862 | 1631509 | ID=MS.gene27027.t1;Parent=MS.gene27027 |
| chr1.3 | exon | 1633149 | 1633862 | 1633149 | ID=MS.gene27027.t1.exon1;Parent=MS.gene27027.t1 |
| chr1.3 | CDS | 1633149 | 1633862 | 1633149 | ID=cds.MS.gene27027.t1;Parent=MS.gene27027.t1 |
| chr1.3 | exon | 1631509 | 1632429 | 1631509 | ID=MS.gene27027.t1.exon2;Parent=MS.gene27027.t1 |
| chr1.3 | CDS | 1631509 | 1632429 | 1631509 | ID=cds.MS.gene27027.t1;Parent=MS.gene27027.t1 |
| Gene Sequence |
| Protein sequence |
