Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82837.t1 | XP_013450768.1 | 94.8 | 516 | 27 | 0 | 29 | 544 | 1 | 516 | 3.10E-294 | 1020.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82837.t1 | Q9FYG4 | 46.2 | 533 | 277 | 8 | 17 | 544 | 88 | 615 | 1.8e-128 | 461.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82837.t1 | A0A072U624 | 94.8 | 516 | 27 | 0 | 29 | 544 | 1 | 516 | 2.2e-294 | 1020.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024604 | MS.gene82837 | PPI |
| MS.gene22907 | MS.gene82837 | PPI |
| MS.gene92577 | MS.gene82837 | PPI |
| MS.gene048092 | MS.gene82837 | PPI |
| MS.gene73248 | MS.gene82837 | PPI |
| MS.gene037665 | MS.gene82837 | PPI |
| MS.gene050500 | MS.gene82837 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82837.t1 | MTR_6g004960 | 94.767 | 516 | 27 | 0 | 29 | 544 | 1 | 516 | 0.0 | 1025 |
| MS.gene82837.t1 | MTR_1g023570 | 72.381 | 525 | 139 | 3 | 20 | 544 | 25 | 543 | 0.0 | 806 |
| MS.gene82837.t1 | MTR_3g113210 | 64.850 | 532 | 180 | 4 | 18 | 544 | 26 | 555 | 0.0 | 745 |
| MS.gene82837.t1 | MTR_7g114530 | 53.208 | 530 | 234 | 7 | 23 | 544 | 47 | 570 | 0.0 | 567 |
| MS.gene82837.t1 | MTR_5g038410 | 48.333 | 540 | 239 | 11 | 39 | 543 | 1 | 535 | 1.03e-179 | 517 |
| MS.gene82837.t1 | MTR_8g102900 | 44.972 | 527 | 276 | 11 | 25 | 543 | 112 | 632 | 6.60e-152 | 449 |
| MS.gene82837.t1 | MTR_3g075520 | 42.718 | 515 | 278 | 9 | 39 | 543 | 1 | 508 | 2.77e-145 | 428 |
| MS.gene82837.t1 | MTR_4g019520 | 44.000 | 550 | 282 | 12 | 1 | 543 | 1 | 531 | 6.24e-144 | 425 |
| MS.gene82837.t1 | MTR_6g088300 | 42.672 | 539 | 287 | 13 | 21 | 543 | 52 | 584 | 2.11e-137 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82837.t1 | AT1G19900 | 60.076 | 526 | 202 | 5 | 21 | 543 | 27 | 547 | 0.0 | 659 |
| MS.gene82837.t1 | AT1G75620 | 58.932 | 543 | 202 | 8 | 5 | 543 | 21 | 546 | 0.0 | 653 |
| MS.gene82837.t1 | AT3G57620 | 50.549 | 546 | 255 | 6 | 2 | 543 | 12 | 546 | 0.0 | 575 |
| MS.gene82837.t1 | AT1G14430 | 49.550 | 555 | 251 | 8 | 2 | 543 | 26 | 564 | 0.0 | 535 |
| MS.gene82837.t1 | AT1G67290 | 46.476 | 525 | 271 | 8 | 25 | 544 | 96 | 615 | 4.60e-155 | 457 |
| MS.gene82837.t1 | AT5G19580 | 44.190 | 525 | 281 | 9 | 25 | 544 | 77 | 594 | 9.33e-152 | 447 |
| MS.gene82837.t1 | AT3G53950 | 43.667 | 529 | 271 | 12 | 25 | 544 | 34 | 544 | 2.85e-144 | 427 |
Find 126 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCCTAGCGAGGGTATT+TGG | 0.135234 | 6.1:+1026066 | MS.gene82837:CDS |
| TATTCATCAAAACTAATATT+TGG | 0.191236 | 6.1:+1024250 | MS.gene82837:CDS |
| ATATTCGATCGTACTGATTT+TGG | 0.193387 | 6.1:+1024105 | MS.gene82837:CDS |
| TTTGCTTGTAGATTCTTTAA+TGG | 0.195075 | 6.1:-1025252 | None:intergenic |
| TGCTTTGATATCATTGCTTT+TGG | 0.208143 | 6.1:-1024496 | None:intergenic |
| GTATCATTCCACTGCTGTTT+TGG | 0.235518 | 6.1:+1025614 | MS.gene82837:CDS |
| TAACTGACCCTAATCCAAAA+TGG | 0.257555 | 6.1:+1025385 | MS.gene82837:CDS |
| ATAATTAATGGGGCTTCTTC+GGG | 0.259414 | 6.1:+1025477 | MS.gene82837:CDS |
| GAATCTACAAGCAAATAATT+TGG | 0.276766 | 6.1:+1025260 | MS.gene82837:CDS |
| TATTCTCTTCGATTATAATA+AGG | 0.280788 | 6.1:+1024635 | MS.gene82837:CDS |
| GATAATTAATGGGGCTTCTT+CGG | 0.282375 | 6.1:+1025476 | MS.gene82837:CDS |
| GGTTCGTGATGGGAGGGTTT+TGG | 0.294024 | 6.1:+1025635 | MS.gene82837:CDS |
| ATTAAAGTATGGTCAGAAAT+TGG | 0.295264 | 6.1:+1025812 | MS.gene82837:CDS |
| GAGAATGAATGTGTATTAAA+AGG | 0.305651 | 6.1:-1025903 | None:intergenic |
| ATAGTCTCCATGTCCCATTT+TGG | 0.314071 | 6.1:-1025399 | None:intergenic |
| TAATTTGGAAGCTGAGGTTT+TGG | 0.319524 | 6.1:+1025275 | MS.gene82837:CDS |
| TACCGAACAAATAATCCAAT+TGG | 0.344708 | 6.1:+1025549 | MS.gene82837:CDS |
| GACTACCATTAGGGAGGATA+TGG | 0.346654 | 6.1:-1024428 | None:intergenic |
| GGGGCTTCTTCGGGGACATC+TGG | 0.362253 | 6.1:+1025486 | MS.gene82837:CDS |
| ACCCAATTGGATTATTTGTT+CGG | 0.362848 | 6.1:-1025551 | None:intergenic |
| ATTATCAAAATGTTACCATT+TGG | 0.368414 | 6.1:-1025459 | None:intergenic |
| AGCTTCAATTTCAAGTGAAC+AGG | 0.377596 | 6.1:+1025835 | MS.gene82837:CDS |
| ACAACAATCTGACTACCATT+AGG | 0.377858 | 6.1:-1024438 | None:intergenic |
| AATTCCTAGCGAGGGTATTT+GGG | 0.384198 | 6.1:+1026067 | MS.gene82837:CDS |
| ATCATCTTTCACAGCTAATT+CGG | 0.393452 | 6.1:-1024175 | None:intergenic |
| TCAGATTGTTGTTGGTGGTA+AGG | 0.394840 | 6.1:+1024449 | MS.gene82837:CDS |
| CAGATTGTTGTTGGTGGTAA+GGG | 0.397794 | 6.1:+1024450 | MS.gene82837:CDS |
| ACTAATATTTGGTGTTCCTC+TGG | 0.415355 | 6.1:+1024261 | MS.gene82837:CDS |
| GAAGAGAATAGATTTATTGT+TGG | 0.425289 | 6.1:-1024622 | None:intergenic |
| GGTGGTAGTAACCCTCATTT+CGG | 0.427434 | 6.1:+1025660 | MS.gene82837:CDS |
| CAACAATCTGACTACCATTA+GGG | 0.429146 | 6.1:-1024437 | None:intergenic |
| ACTCAAATGGAATTAAAGTA+TGG | 0.429443 | 6.1:+1025801 | MS.gene82837:CDS |
| CTTCTTCGGGGACATCTGGA+TGG | 0.435189 | 6.1:+1025490 | MS.gene82837:CDS |
| GGTGTTCCTCTGGCTCAGTT+AGG | 0.437139 | 6.1:+1024271 | MS.gene82837:CDS |
| AACTGACCCTAATCCAAAAT+GGG | 0.438908 | 6.1:+1025386 | MS.gene82837:CDS |
| GGATCTCCACCTGGTACGTC+TGG | 0.448831 | 6.1:-1025192 | None:intergenic |
| GGTGCAAGAATAGGTGAATT+CGG | 0.450153 | 6.1:-1026008 | None:intergenic |
| TCTTGATTCTAAGACTCAAA+TGG | 0.454929 | 6.1:+1025788 | MS.gene82837:CDS |
| TCACCTATTCTTGCACCTCC+AGG | 0.456588 | 6.1:+1026014 | MS.gene82837:CDS |
| GTGAAATTGTAACCGAAATG+AGG | 0.459540 | 6.1:-1025672 | None:intergenic |
| TCATGACGACACTGTCCGTT+TGG | 0.460457 | 6.1:-1024147 | None:intergenic |
| GTCCTTGCCCGACATGTGAT+TGG | 0.466805 | 6.1:+1024358 | MS.gene82837:CDS |
| CTCAATGAATCAAAGGTTGT+TGG | 0.468137 | 6.1:+1025923 | MS.gene82837:CDS |
| TCTGGCTCAGTTAGGCCTGA+TGG | 0.468575 | 6.1:+1024279 | MS.gene82837:CDS |
| AGCAAATAATTTGGAAGCTG+AGG | 0.471291 | 6.1:+1025269 | MS.gene82837:CDS |
| ACCAGCCATATCCTCCCTAA+TGG | 0.476951 | 6.1:+1024423 | MS.gene82837:CDS |
| TCTTTCACAGCTAATTCGGC+TGG | 0.479670 | 6.1:-1024171 | None:intergenic |
| ACCGAACAAATAATCCAATT+GGG | 0.482021 | 6.1:+1025550 | MS.gene82837:CDS |
| AAACCTGGAGGTGCAAGAAT+AGG | 0.484406 | 6.1:-1026017 | None:intergenic |
| TGGGACATGGAGACTATGCC+AGG | 0.485770 | 6.1:+1025405 | MS.gene82837:CDS |
| CCAGTACTTGGATAATTCCT+AGG | 0.487042 | 6.1:-1025213 | None:intergenic |
| AAAACAGCAGAACCAGTACT+TGG | 0.488072 | 6.1:-1025225 | None:intergenic |
| GCCTCAATGCTAAGCTCGGT+TGG | 0.489520 | 6.1:-1025708 | None:intergenic |
| TAAAGAAGCGGGGTTAGAGC+CGG | 0.490283 | 6.1:-1025528 | None:intergenic |
| AATGGTAGTCAGATTGTTGT+TGG | 0.497988 | 6.1:+1024441 | MS.gene82837:CDS |
| CCTAGGAATTATCCAAGTAC+TGG | 0.500317 | 6.1:+1025213 | MS.gene82837:CDS |
| CAAACCGGTGGCTACAACGA+TGG | 0.502858 | 6.1:+1024312 | MS.gene82837:CDS |
| TCTAACATCTCTTTACCAAA+CGG | 0.506746 | 6.1:+1024132 | MS.gene82837:CDS |
| TTCTTCGGGGACATCTGGAT+GGG | 0.510751 | 6.1:+1025491 | MS.gene82837:CDS |
| ACGTACCAGGTGGAGATCCT+AGG | 0.513815 | 6.1:+1025196 | MS.gene82837:CDS |
| GAATCAAAGGTTGTTGGTGT+TGG | 0.514243 | 6.1:+1025929 | MS.gene82837:CDS |
| TATTTGTTCGGTAAAGAAGC+GGG | 0.518896 | 6.1:-1025539 | None:intergenic |
| TCCAACCGAGCTTAGCATTG+AGG | 0.519919 | 6.1:+1025707 | MS.gene82837:CDS |
| AAAGAAGCGGGGTTAGAGCC+GGG | 0.522080 | 6.1:-1025527 | None:intergenic |
| GATGGATCACTCGTTCAAAC+CGG | 0.522253 | 6.1:+1024297 | MS.gene82837:CDS |
| TTTCACTCCAATCACATGTC+GGG | 0.522572 | 6.1:-1024365 | None:intergenic |
| TGAAATTGTAACCGAAATGA+GGG | 0.525849 | 6.1:-1025671 | None:intergenic |
| ATTTCCATCGTTGTAGCCAC+CGG | 0.530531 | 6.1:-1024316 | None:intergenic |
| ATTCATTCTCAATGAATCAA+AGG | 0.534552 | 6.1:+1025916 | MS.gene82837:CDS |
| TTCGGACACTGGAGATGCTA+CGG | 0.538641 | 6.1:-1023998 | None:intergenic |
| CCCTAATCCAAAATGGGACA+TGG | 0.551232 | 6.1:+1025392 | MS.gene82837:CDS |
| AATTTGAATCTCGACCCAAT+TGG | 0.553697 | 6.1:-1025564 | None:intergenic |
| GGGACATCTGGATGGGAACA+AGG | 0.557252 | 6.1:+1025498 | MS.gene82837:CDS |
| TGCTACGGTGGCAATCAACA+TGG | 0.558613 | 6.1:-1023983 | None:intergenic |
| TGGCAATCAACATGGGAAGA+AGG | 0.559775 | 6.1:-1023975 | None:intergenic |
| CGATGGTAACCTCTTCATCA+TGG | 0.561019 | 6.1:+1024599 | MS.gene82837:CDS |
| TCACTCATGACTCTAGGCCC+TGG | 0.562841 | 6.1:-1025423 | None:intergenic |
| GCGGACTTGCTTCCGAGAGA+TGG | 0.563369 | 6.1:+1024394 | MS.gene82837:CDS |
| ACCATGTCACTCATGACTCT+AGG | 0.563686 | 6.1:-1025429 | None:intergenic |
| AAGCGTTGGATACATGTGCC+AGG | 0.566790 | 6.1:+1025355 | MS.gene82837:CDS |
| ATTCAAATTGCAAAGATCAT+CGG | 0.572341 | 6.1:+1025578 | MS.gene82837:CDS |
| GTTTGAACGAGTGATCCATC+AGG | 0.572565 | 6.1:-1024294 | None:intergenic |
| TATTGTTGGCCATGATGAAG+AGG | 0.575124 | 6.1:-1024608 | None:intergenic |
| GCTGGTGGCATACCATCTCT+CGG | 0.583088 | 6.1:-1024406 | None:intergenic |
| ACCATTAGGGAGGATATGGC+TGG | 0.584850 | 6.1:-1024424 | None:intergenic |
| AGATTGTTGTTGGTGGTAAG+GGG | 0.585154 | 6.1:+1024451 | MS.gene82837:CDS |
| CTCCAATCACATGTCGGGCA+AGG | 0.586592 | 6.1:-1024360 | None:intergenic |
| ATGGGAACAAGGTCGTGACC+CGG | 0.593648 | 6.1:+1025509 | MS.gene82837:CDS |
| TGTACCCAAATACCCTCGCT+AGG | 0.595183 | 6.1:-1026071 | None:intergenic |
| ATTTCACTCCAATCACATGT+CGG | 0.600174 | 6.1:-1024366 | None:intergenic |
| AAAACATTTCCAGACGTACC+AGG | 0.600718 | 6.1:+1025183 | MS.gene82837:CDS |
| GGTAGTCAGATTGTTGTTGG+TGG | 0.600920 | 6.1:+1024444 | MS.gene82837:CDS |
| GACATGGTGATGCTTCCAAA+TGG | 0.603529 | 6.1:+1025444 | MS.gene82837:CDS |
| GCAGTGGAATGATACATTCG+AGG | 0.608031 | 6.1:-1025606 | None:intergenic |
| TAATTAATGGGGCTTCTTCG+GGG | 0.608196 | 6.1:+1025478 | MS.gene82837:CDS |
| GTTTGTGGAGGAGCATCAAG+AGG | 0.610438 | 6.1:+1025297 | MS.gene82837:CDS |
| TCAACATGGGAAGAAGGAAG+AGG | 0.614061 | 6.1:-1023969 | None:intergenic |
| TTATTTGTTCGGTAAAGAAG+CGG | 0.614255 | 6.1:-1025540 | None:intergenic |
| AATAAAGTGAATCATGTGAA+CGG | 0.618167 | 6.1:+1025957 | MS.gene82837:CDS |
| ATATGCCTCAATGCTAAGCT+CGG | 0.618540 | 6.1:-1025712 | None:intergenic |
| CAACGCACAAATTCCTAGCG+AGG | 0.623283 | 6.1:+1026058 | MS.gene82837:CDS |
| AATGAATGTGTATTAAAAGG+CGG | 0.623382 | 6.1:-1025900 | None:intergenic |
| TGTCCGAAAACAACGGACAA+TGG | 0.624519 | 6.1:+1024013 | MS.gene82837:CDS |
| GACATCATACTCAACAGAGT+GGG | 0.624745 | 6.1:-1024205 | None:intergenic |
| ATCAGGCCTAACTGAGCCAG+AGG | 0.628809 | 6.1:-1024277 | None:intergenic |
| AACGCACAAATTCCTAGCGA+GGG | 0.632453 | 6.1:+1026059 | MS.gene82837:CDS |
| ATCACGAACCAAAACAGCAG+TGG | 0.634051 | 6.1:-1025622 | None:intergenic |
| CAAACATTACTAGGGTATGG+TGG | 0.648777 | 6.1:+1025158 | MS.gene82837:intron |
| AAGAAGGAAGAGGAGCAAAG+TGG | 0.650038 | 6.1:-1023959 | None:intergenic |
| GGATCACTCGTTCAAACCGG+TGG | 0.650619 | 6.1:+1024300 | MS.gene82837:CDS |
| GCTACGGTGGCAATCAACAT+GGG | 0.657231 | 6.1:-1023982 | None:intergenic |
| ATTTGTTCGGTAAAGAAGCG+GGG | 0.658210 | 6.1:-1025538 | None:intergenic |
| TTTGTGGAGGAGCATCAAGA+GGG | 0.659675 | 6.1:+1025298 | MS.gene82837:CDS |
| AAACGATCGCTTAGATACGA+AGG | 0.672633 | 6.1:-1025738 | None:intergenic |
| GGGACATGGAGACTATGCCA+GGG | 0.674280 | 6.1:+1025406 | MS.gene82837:CDS |
| CAATCTGACTACCATTAGGG+AGG | 0.681911 | 6.1:-1024434 | None:intergenic |
| GCCTAGAGTCATGAGTGACA+TGG | 0.683715 | 6.1:+1025428 | MS.gene82837:CDS |
| AGACATCATACTCAACAGAG+TGG | 0.686596 | 6.1:-1024206 | None:intergenic |
| ATTAGGGAGGATATGGCTGG+TGG | 0.689690 | 6.1:-1024421 | None:intergenic |
| TGTGATTGGAGTGAAATCGA+CGG | 0.691800 | 6.1:+1024372 | MS.gene82837:CDS |
| TCTCCAGTGTCCGAAAACAA+CGG | 0.695215 | 6.1:+1024006 | MS.gene82837:CDS |
| AAGAATAGGTGAATTCGGCA+CGG | 0.696373 | 6.1:-1026003 | None:intergenic |
| TAATTCCTAGGATCTCCACC+TGG | 0.703671 | 6.1:-1025201 | None:intergenic |
| GGACACTGGAGATGCTACGG+TGG | 0.715660 | 6.1:-1023995 | None:intergenic |
| ACATTTCCAGACGTACCAGG+TGG | 0.719464 | 6.1:+1025186 | MS.gene82837:CDS |
| GATTGGAGTGAAATCGACGG+CGG | 0.775274 | 6.1:+1024375 | MS.gene82837:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAACATAATAACATA+TGG | - | chr6.1:1025131-1025150 | None:intergenic | 15.0% |
| !! | TATTCATCAAAACTAATATT+TGG | + | chr6.1:1024250-1024269 | MS.gene82837:CDS | 15.0% |
| !!! | AAATTATAGTTTACCATTTT+TGG | + | chr6.1:1024518-1024537 | MS.gene82837:CDS | 15.0% |
| !!! | ACAAAATATTATTTTCACTA+TGG | + | chr6.1:1025054-1025073 | MS.gene82837:intron | 15.0% |
| !!! | ATATTAGTTTTGATGAATAA+TGG | - | chr6.1:1024249-1024268 | None:intergenic | 15.0% |
| !!! | GTAACATTTTGATAATTAAT+GGG | + | chr6.1:1025466-1025485 | MS.gene82837:CDS | 15.0% |
| !!! | TAACATTTTGATAATTAATG+GGG | + | chr6.1:1025467-1025486 | MS.gene82837:CDS | 15.0% |
| !!! | TAATATGAAATTCTAAAGTA+GGG | + | chr6.1:1024910-1024929 | MS.gene82837:intron | 15.0% |
| !! | ACACACTACTTTAAATTTAA+TGG | + | chr6.1:1025097-1025116 | MS.gene82837:intron | 20.0% |
| !! | ATTATCAAAATGTTACCATT+TGG | - | chr6.1:1025462-1025481 | None:intergenic | 20.0% |
| !! | TATTCTCTTCGATTATAATA+AGG | + | chr6.1:1024635-1024654 | MS.gene82837:CDS | 20.0% |
| !!! | CTAATATGAAATTCTAAAGT+AGG | + | chr6.1:1024909-1024928 | MS.gene82837:intron | 20.0% |
| !!! | CTTTAGAATTTCATATTAGA+TGG | - | chr6.1:1024908-1024927 | None:intergenic | 20.0% |
| !!! | GAAAAGTATTAGTTTTTCTT+TGG | + | chr6.1:1024686-1024705 | MS.gene82837:intron | 20.0% |
| !!! | GGTAACATTTTGATAATTAA+TGG | + | chr6.1:1025465-1025484 | MS.gene82837:CDS | 20.0% |
| ! | AATAAAGTGAATCATGTGAA+CGG | + | chr6.1:1025957-1025976 | MS.gene82837:CDS | 25.0% |
| ! | AATGAATGTGTATTAAAAGG+CGG | - | chr6.1:1025903-1025922 | None:intergenic | 25.0% |
| ! | ACAAATAGTAGATAAAAACC+TGG | - | chr6.1:1026035-1026054 | None:intergenic | 25.0% |
| ! | ACTCAAATGGAATTAAAGTA+TGG | + | chr6.1:1025801-1025820 | MS.gene82837:CDS | 25.0% |
| ! | ATCATAACATTTCTACACAA+AGG | - | chr6.1:1025029-1025048 | None:intergenic | 25.0% |
| ! | ATTAAAGTATGGTCAGAAAT+TGG | + | chr6.1:1025812-1025831 | MS.gene82837:CDS | 25.0% |
| ! | ATTCAAATTGCAAAGATCAT+CGG | + | chr6.1:1025578-1025597 | MS.gene82837:CDS | 25.0% |
| ! | ATTCATTCTCAATGAATCAA+AGG | + | chr6.1:1025916-1025935 | MS.gene82837:CDS | 25.0% |
| ! | GAAGAGAATAGATTTATTGT+TGG | - | chr6.1:1024625-1024644 | None:intergenic | 25.0% |
| ! | GAATCTACAAGCAAATAATT+TGG | + | chr6.1:1025260-1025279 | MS.gene82837:CDS | 25.0% |
| ! | GAGAATGAATGTGTATTAAA+AGG | - | chr6.1:1025906-1025925 | None:intergenic | 25.0% |
| ! | TTTGCTTGTAGATTCTTTAA+TGG | - | chr6.1:1025255-1025274 | None:intergenic | 25.0% |
| !! | AGGTTTTTATCTACTATTTG+TGG | + | chr6.1:1026034-1026053 | MS.gene82837:CDS | 25.0% |
| !! | GAATCAAGAGACATAATTTT+CGG | - | chr6.1:1025777-1025796 | None:intergenic | 25.0% |
| !!! | TAGTTTTGATGAATAATGGA+CGG | - | chr6.1:1024245-1024264 | None:intergenic | 25.0% |
| AATAGTAGATAAAAACCTGG+AGG | - | chr6.1:1026032-1026051 | None:intergenic | 30.0% | |
| ACCCAATTGGATTATTTGTT+CGG | - | chr6.1:1025554-1025573 | None:intergenic | 30.0% | |
| ACCGAACAAATAATCCAATT+GGG | + | chr6.1:1025550-1025569 | MS.gene82837:CDS | 30.0% | |
| ATCATCTTTCACAGCTAATT+CGG | - | chr6.1:1024178-1024197 | None:intergenic | 30.0% | |
| GAACTATCATCTATGTTCAT+CGG | - | chr6.1:1024982-1025001 | None:intergenic | 30.0% | |
| TACCGAACAAATAATCCAAT+TGG | + | chr6.1:1025549-1025568 | MS.gene82837:CDS | 30.0% | |
| TCGACATTGAGAAAAACAAA+AGG | - | chr6.1:1024582-1024601 | None:intergenic | 30.0% | |
| TCTAACATCTCTTTACCAAA+CGG | + | chr6.1:1024132-1024151 | MS.gene82837:CDS | 30.0% | |
| TGAAATTGTAACCGAAATGA+GGG | - | chr6.1:1025674-1025693 | None:intergenic | 30.0% | |
| TTATTTGTTCGGTAAAGAAG+CGG | - | chr6.1:1025543-1025562 | None:intergenic | 30.0% | |
| TTGTGTACCAAACATTACTA+GGG | + | chr6.1:1025150-1025169 | MS.gene82837:intron | 30.0% | |
| TTTGTGTACCAAACATTACT+AGG | + | chr6.1:1025149-1025168 | MS.gene82837:intron | 30.0% | |
| ! | GAATGTTTTTCTTAAAGCGT+TGG | + | chr6.1:1025341-1025360 | MS.gene82837:CDS | 30.0% |
| ! | TGCTTTGATATCATTGCTTT+TGG | - | chr6.1:1024499-1024518 | None:intergenic | 30.0% |
| !! | AGATGCTACAAAAAAGCATT+GGG | + | chr6.1:1024037-1024056 | MS.gene82837:CDS | 30.0% |
| !! | GCTTTGATATCATTGCTTTT+GGG | - | chr6.1:1024498-1024517 | None:intergenic | 30.0% |
| !! | TACAAGTTATTTTCTTGCTC+AGG | - | chr6.1:1024558-1024577 | None:intergenic | 30.0% |
| !! | TCTTGATTCTAAGACTCAAA+TGG | + | chr6.1:1025788-1025807 | MS.gene82837:CDS | 30.0% |
| !! | TTTGTTTTTCTCAATGTCGA+TGG | + | chr6.1:1024582-1024601 | MS.gene82837:CDS | 30.0% |
| !!! | ATATTCGATCGTACTGATTT+TGG | + | chr6.1:1024105-1024124 | MS.gene82837:CDS | 30.0% |
| AACTGACCCTAATCCAAAAT+GGG | + | chr6.1:1025386-1025405 | MS.gene82837:CDS | 35.0% | |
| AATGGTAGTCAGATTGTTGT+TGG | + | chr6.1:1024441-1024460 | MS.gene82837:CDS | 35.0% | |
| AATTTGAATCTCGACCCAAT+TGG | - | chr6.1:1025567-1025586 | None:intergenic | 35.0% | |
| ACAACAATCTGACTACCATT+AGG | - | chr6.1:1024441-1024460 | None:intergenic | 35.0% | |
| AGCAAATAATTTGGAAGCTG+AGG | + | chr6.1:1025269-1025288 | MS.gene82837:CDS | 35.0% | |
| ATAATTAATGGGGCTTCTTC+GGG | + | chr6.1:1025477-1025496 | MS.gene82837:CDS | 35.0% | |
| ATTTCACTCCAATCACATGT+CGG | - | chr6.1:1024369-1024388 | None:intergenic | 35.0% | |
| CAACAATCTGACTACCATTA+GGG | - | chr6.1:1024440-1024459 | None:intergenic | 35.0% | |
| CACAAACTCTTGTGAGATAA+TGG | - | chr6.1:1024778-1024797 | None:intergenic | 35.0% | |
| CTCAATGAATCAAAGGTTGT+TGG | + | chr6.1:1025923-1025942 | MS.gene82837:CDS | 35.0% | |
| GATAATTAATGGGGCTTCTT+CGG | + | chr6.1:1025476-1025495 | MS.gene82837:CDS | 35.0% | |
| GTGAAATTGTAACCGAAATG+AGG | - | chr6.1:1025675-1025694 | None:intergenic | 35.0% | |
| TAACTGACCCTAATCCAAAA+TGG | + | chr6.1:1025385-1025404 | MS.gene82837:CDS | 35.0% | |
| TACCAAACATTACTAGGGTA+TGG | + | chr6.1:1025155-1025174 | MS.gene82837:intron | 35.0% | |
| TATTTGACCACATAGCCAAA+TGG | - | chr6.1:1024937-1024956 | None:intergenic | 35.0% | |
| TATTTGTTCGGTAAAGAAGC+GGG | - | chr6.1:1025542-1025561 | None:intergenic | 35.0% | |
| ! | AGCTTCAATTTCAAGTGAAC+AGG | + | chr6.1:1025835-1025854 | MS.gene82837:CDS | 35.0% |
| ! | ATTTTCTTGCTCAGGATCAT+TGG | - | chr6.1:1024550-1024569 | None:intergenic | 35.0% |
| ! | CAGATGCTACAAAAAAGCAT+TGG | + | chr6.1:1024036-1024055 | MS.gene82837:CDS | 35.0% |
| ! | TAATTTGGAAGCTGAGGTTT+TGG | + | chr6.1:1025275-1025294 | MS.gene82837:CDS | 35.0% |
| !! | ACTAATATTTGGTGTTCCTC+TGG | + | chr6.1:1024261-1024280 | MS.gene82837:CDS | 35.0% |
| !! | ATTCTAAAGTAGGGTCCATT+TGG | + | chr6.1:1024919-1024938 | MS.gene82837:intron | 35.0% |
| !! | GATAATGGATCAGTCATTGT+AGG | - | chr6.1:1024763-1024782 | None:intergenic | 35.0% |
| AAAACAGCAGAACCAGTACT+TGG | - | chr6.1:1025228-1025247 | None:intergenic | 40.0% | |
| AAAACATTTCCAGACGTACC+AGG | + | chr6.1:1025183-1025202 | MS.gene82837:CDS | 40.0% | |
| AAACGATCGCTTAGATACGA+AGG | - | chr6.1:1025741-1025760 | None:intergenic | 40.0% | |
| AAGAATAGGTGAATTCGGCA+CGG | - | chr6.1:1026006-1026025 | None:intergenic | 40.0% | |
| AGACATCATACTCAACAGAG+TGG | - | chr6.1:1024209-1024228 | None:intergenic | 40.0% | |
| ATATGCCTCAATGCTAAGCT+CGG | - | chr6.1:1025715-1025734 | None:intergenic | 40.0% | |
| ATTTGTTCGGTAAAGAAGCG+GGG | - | chr6.1:1025541-1025560 | None:intergenic | 40.0% | |
| CAAACATTACTAGGGTATGG+TGG | + | chr6.1:1025158-1025177 | MS.gene82837:intron | 40.0% | |
| CACCATACCCTAGTAATGTT+TGG | - | chr6.1:1025160-1025179 | None:intergenic | 40.0% | |
| CCAGTACTTGGATAATTCCT+AGG | - | chr6.1:1025216-1025235 | None:intergenic | 40.0% | |
| CCTAGGAATTATCCAAGTAC+TGG | + | chr6.1:1025213-1025232 | MS.gene82837:CDS | 40.0% | |
| GAATCAAAGGTTGTTGGTGT+TGG | + | chr6.1:1025929-1025948 | MS.gene82837:CDS | 40.0% | |
| GACATCATACTCAACAGAGT+GGG | - | chr6.1:1024208-1024227 | None:intergenic | 40.0% | |
| GGTGCAAGAATAGGTGAATT+CGG | - | chr6.1:1026011-1026030 | None:intergenic | 40.0% | |
| TAATTAATGGGGCTTCTTCG+GGG | + | chr6.1:1025478-1025497 | MS.gene82837:CDS | 40.0% | |
| TATTGTTGGCCATGATGAAG+AGG | - | chr6.1:1024611-1024630 | None:intergenic | 40.0% | |
| TGTGATTGGAGTGAAATCGA+CGG | + | chr6.1:1024372-1024391 | MS.gene82837:CDS | 40.0% | |
| TTTCACTCCAATCACATGTC+GGG | - | chr6.1:1024368-1024387 | None:intergenic | 40.0% | |
| ! | ATAGTCTCCATGTCCCATTT+TGG | - | chr6.1:1025402-1025421 | None:intergenic | 40.0% |
| ! | CCATGTCCCATTTTGGATTA+GGG | - | chr6.1:1025395-1025414 | None:intergenic | 40.0% |
| ! | TCATTGGTCTCAGCCAAAAA+TGG | - | chr6.1:1024534-1024553 | None:intergenic | 40.0% |
| ! | TCCATGTCCCATTTTGGATT+AGG | - | chr6.1:1025396-1025415 | None:intergenic | 40.0% |
| !! | AAATTCCTAGCGAGGGTATT+TGG | + | chr6.1:1026066-1026085 | MS.gene82837:CDS | 40.0% |
| !! | AATTCCTAGCGAGGGTATTT+GGG | + | chr6.1:1026067-1026086 | MS.gene82837:CDS | 40.0% |
| !! | AGATTGTTGTTGGTGGTAAG+GGG | + | chr6.1:1024451-1024470 | MS.gene82837:CDS | 40.0% |
| !! | CAGATTGTTGTTGGTGGTAA+GGG | + | chr6.1:1024450-1024469 | MS.gene82837:CDS | 40.0% |
| !! | GTATCATTCCACTGCTGTTT+TGG | + | chr6.1:1025614-1025633 | MS.gene82837:CDS | 40.0% |
| !! | TCAGATTGTTGTTGGTGGTA+AGG | + | chr6.1:1024449-1024468 | MS.gene82837:CDS | 40.0% |
| !!! | AGGGTCAGTTATTTTGATCC+TGG | - | chr6.1:1025376-1025395 | None:intergenic | 40.0% |
| AACGCACAAATTCCTAGCGA+GGG | + | chr6.1:1026059-1026078 | MS.gene82837:CDS | 45.0% | |
| AAGAAGGAAGAGGAGCAAAG+TGG | - | chr6.1:1023962-1023981 | None:intergenic | 45.0% | |
| ACCATGTCACTCATGACTCT+AGG | - | chr6.1:1025432-1025451 | None:intergenic | 45.0% | |
| ATCACGAACCAAAACAGCAG+TGG | - | chr6.1:1025625-1025644 | None:intergenic | 45.0% | |
| ATTTCCATCGTTGTAGCCAC+CGG | - | chr6.1:1024319-1024338 | None:intergenic | 45.0% | |
| CAATCTGACTACCATTAGGG+AGG | - | chr6.1:1024437-1024456 | None:intergenic | 45.0% | |
| CCCTAATCCAAAATGGGACA+TGG | + | chr6.1:1025392-1025411 | MS.gene82837:CDS | 45.0% | |
| CGATGGTAACCTCTTCATCA+TGG | + | chr6.1:1024599-1024618 | MS.gene82837:CDS | 45.0% | |
| GACTACCATTAGGGAGGATA+TGG | - | chr6.1:1024431-1024450 | None:intergenic | 45.0% | |
| GATGGATCACTCGTTCAAAC+CGG | + | chr6.1:1024297-1024316 | MS.gene82837:CDS | 45.0% | |
| GCAGTGGAATGATACATTCG+AGG | - | chr6.1:1025609-1025628 | None:intergenic | 45.0% | |
| GGTGGTAGTAACCCTCATTT+CGG | + | chr6.1:1025660-1025679 | MS.gene82837:CDS | 45.0% | |
| GTTTGAACGAGTGATCCATC+AGG | - | chr6.1:1024297-1024316 | None:intergenic | 45.0% | |
| TAATTCCTAGGATCTCCACC+TGG | - | chr6.1:1025204-1025223 | None:intergenic | 45.0% | |
| TCAACATGGGAAGAAGGAAG+AGG | - | chr6.1:1023972-1023991 | None:intergenic | 45.0% | |
| TCTCCAGTGTCCGAAAACAA+CGG | + | chr6.1:1024006-1024025 | MS.gene82837:CDS | 45.0% | |
| TCTTTCACAGCTAATTCGGC+TGG | - | chr6.1:1024174-1024193 | None:intergenic | 45.0% | |
| TGGCAATCAACATGGGAAGA+AGG | - | chr6.1:1023978-1023997 | None:intergenic | 45.0% | |
| TGTCCGAAAACAACGGACAA+TGG | + | chr6.1:1024013-1024032 | MS.gene82837:CDS | 45.0% | |
| ! | AAACCTGGAGGTGCAAGAAT+AGG | - | chr6.1:1026020-1026039 | None:intergenic | 45.0% |
| ! | GACATGGTGATGCTTCCAAA+TGG | + | chr6.1:1025444-1025463 | MS.gene82837:CDS | 45.0% |
| ! | GGTAGTCAGATTGTTGTTGG+TGG | + | chr6.1:1024444-1024463 | MS.gene82837:CDS | 45.0% |
| !! | CTGCCATTGTCCGTTGTTTT+CGG | - | chr6.1:1024019-1024038 | None:intergenic | 45.0% |
| !! | TTTGTGGAGGAGCATCAAGA+GGG | + | chr6.1:1025298-1025317 | MS.gene82837:CDS | 45.0% |
| !!! | ACTGCTGTTTTGGTTCGTGA+TGG | + | chr6.1:1025624-1025643 | MS.gene82837:CDS | 45.0% |
| !!! | CTGCTGTTTTGGTTCGTGAT+GGG | + | chr6.1:1025625-1025644 | MS.gene82837:CDS | 45.0% |
| !!! | GAAGCTGAGGTTTTGGTTTG+TGG | + | chr6.1:1025282-1025301 | MS.gene82837:CDS | 45.0% |
| !!! | TGTTTTGGTTCGTGATGGGA+GGG | + | chr6.1:1025629-1025648 | MS.gene82837:CDS | 45.0% |
| !!! | AAATTTTTTTTTTACTATTT+TGG | - | chr6.1:1024809-1024828 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTACTATTTT+GGG | - | chr6.1:1024808-1024827 | None:intergenic | 5.0% |
| !!! | AGTAAAAAAAAAATTTTTTT+AGG | + | chr6.1:1024813-1024832 | MS.gene82837:intron | 5.0% |
| ACATTTCCAGACGTACCAGG+TGG | + | chr6.1:1025186-1025205 | MS.gene82837:CDS | 50.0% | |
| ACCAGCCATATCCTCCCTAA+TGG | + | chr6.1:1024423-1024442 | MS.gene82837:CDS | 50.0% | |
| ACCATTAGGGAGGATATGGC+TGG | - | chr6.1:1024427-1024446 | None:intergenic | 50.0% | |
| ATTAGGGAGGATATGGCTGG+TGG | - | chr6.1:1024424-1024443 | None:intergenic | 50.0% | |
| CAACGCACAAATTCCTAGCG+AGG | + | chr6.1:1026058-1026077 | MS.gene82837:CDS | 50.0% | |
| GATTGGAGTGAAATCGACGG+CGG | + | chr6.1:1024375-1024394 | MS.gene82837:CDS | 50.0% | |
| GCCTAGAGTCATGAGTGACA+TGG | + | chr6.1:1025428-1025447 | MS.gene82837:CDS | 50.0% | |
| GCTACGGTGGCAATCAACAT+GGG | - | chr6.1:1023985-1024004 | None:intergenic | 50.0% | |
| GTAGGGTCCATTTGGCTATG+TGG | + | chr6.1:1024927-1024946 | MS.gene82837:intron | 50.0% | |
| TAAAGAAGCGGGGTTAGAGC+CGG | - | chr6.1:1025531-1025550 | None:intergenic | 50.0% | |
| TCACCTATTCTTGCACCTCC+AGG | + | chr6.1:1026014-1026033 | MS.gene82837:CDS | 50.0% | |
| TCATGACGACACTGTCCGTT+TGG | - | chr6.1:1024150-1024169 | None:intergenic | 50.0% | |
| TCCAACCGAGCTTAGCATTG+AGG | + | chr6.1:1025707-1025726 | MS.gene82837:CDS | 50.0% | |
| TGCTACGGTGGCAATCAACA+TGG | - | chr6.1:1023986-1024005 | None:intergenic | 50.0% | |
| TGTACCCAAATACCCTCGCT+AGG | - | chr6.1:1026074-1026093 | None:intergenic | 50.0% | |
| TTCGGACACTGGAGATGCTA+CGG | - | chr6.1:1024001-1024020 | None:intergenic | 50.0% | |
| TTCTTCGGGGACATCTGGAT+GGG | + | chr6.1:1025491-1025510 | MS.gene82837:CDS | 50.0% | |
| !! | AAGCGTTGGATACATGTGCC+AGG | + | chr6.1:1025355-1025374 | MS.gene82837:CDS | 50.0% |
| !! | GTTTGTGGAGGAGCATCAAG+AGG | + | chr6.1:1025297-1025316 | MS.gene82837:CDS | 50.0% |
| !! | TGTCCGTTGTTTTCGGACAC+TGG | - | chr6.1:1024012-1024031 | None:intergenic | 50.0% |
| !!! | CTGTTTTGGTTCGTGATGGG+AGG | + | chr6.1:1025628-1025647 | MS.gene82837:CDS | 50.0% |
| !!! | GCTGAGGTTTTGGTTTGTGG+AGG | + | chr6.1:1025285-1025304 | MS.gene82837:CDS | 50.0% |
| AAAGAAGCGGGGTTAGAGCC+GGG | - | chr6.1:1025530-1025549 | None:intergenic | 55.0% | |
| ACGTACCAGGTGGAGATCCT+AGG | + | chr6.1:1025196-1025215 | MS.gene82837:CDS | 55.0% | |
| ATCAGGCCTAACTGAGCCAG+AGG | - | chr6.1:1024280-1024299 | None:intergenic | 55.0% | |
| ATGGGAACAAGGTCGTGACC+CGG | + | chr6.1:1025509-1025528 | MS.gene82837:CDS | 55.0% | |
| CAAACCGGTGGCTACAACGA+TGG | + | chr6.1:1024312-1024331 | MS.gene82837:CDS | 55.0% | |
| CTCCAATCACATGTCGGGCA+AGG | - | chr6.1:1024363-1024382 | None:intergenic | 55.0% | |
| CTTCTTCGGGGACATCTGGA+TGG | + | chr6.1:1025490-1025509 | MS.gene82837:CDS | 55.0% | |
| GCCTCAATGCTAAGCTCGGT+TGG | - | chr6.1:1025711-1025730 | None:intergenic | 55.0% | |
| GCTGGTGGCATACCATCTCT+CGG | - | chr6.1:1024409-1024428 | None:intergenic | 55.0% | |
| GGATCACTCGTTCAAACCGG+TGG | + | chr6.1:1024300-1024319 | MS.gene82837:CDS | 55.0% | |
| GGGACATCTGGATGGGAACA+AGG | + | chr6.1:1025498-1025517 | MS.gene82837:CDS | 55.0% | |
| GGGACATGGAGACTATGCCA+GGG | + | chr6.1:1025406-1025425 | MS.gene82837:CDS | 55.0% | |
| GTCCTTGCCCGACATGTGAT+TGG | + | chr6.1:1024358-1024377 | MS.gene82837:CDS | 55.0% | |
| TCACTCATGACTCTAGGCCC+TGG | - | chr6.1:1025426-1025445 | None:intergenic | 55.0% | |
| TGGGACATGGAGACTATGCC+AGG | + | chr6.1:1025405-1025424 | MS.gene82837:CDS | 55.0% | |
| ! | GGTGTTCCTCTGGCTCAGTT+AGG | + | chr6.1:1024271-1024290 | MS.gene82837:CDS | 55.0% |
| ! | TCTGGCTCAGTTAGGCCTGA+TGG | + | chr6.1:1024279-1024298 | MS.gene82837:CDS | 55.0% |
| !! | CGTGATGGGAGGGTTTTGGT+TGG | + | chr6.1:1025639-1025658 | MS.gene82837:CDS | 55.0% |
| !! | GGTTCGTGATGGGAGGGTTT+TGG | + | chr6.1:1025635-1025654 | MS.gene82837:CDS | 55.0% |
| !!! | GATGGGAGGGTTTTGGTTGG+TGG | + | chr6.1:1025642-1025661 | MS.gene82837:CDS | 55.0% |
| GGACACTGGAGATGCTACGG+TGG | - | chr6.1:1023998-1024017 | None:intergenic | 60.0% | |
| GGATCTCCACCTGGTACGTC+TGG | - | chr6.1:1025195-1025214 | None:intergenic | 60.0% | |
| ! | GCGGACTTGCTTCCGAGAGA+TGG | + | chr6.1:1024394-1024413 | MS.gene82837:CDS | 60.0% |
| GGGGCTTCTTCGGGGACATC+TGG | + | chr6.1:1025486-1025505 | MS.gene82837:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 1023955 | 1026103 | 1023955 | ID=MS.gene82837 |
| chr6.1 | mRNA | 1023955 | 1026103 | 1023955 | ID=MS.gene82837.t1;Parent=MS.gene82837 |
| chr6.1 | exon | 1023955 | 1024656 | 1023955 | ID=MS.gene82837.t1.exon1;Parent=MS.gene82837.t1 |
| chr6.1 | CDS | 1023955 | 1024656 | 1023955 | ID=cds.MS.gene82837.t1;Parent=MS.gene82837.t1 |
| chr6.1 | exon | 1025171 | 1026103 | 1025171 | ID=MS.gene82837.t1.exon2;Parent=MS.gene82837.t1 |
| chr6.1 | CDS | 1025171 | 1026103 | 1025171 | ID=cds.MS.gene82837.t1;Parent=MS.gene82837.t1 |
| Gene Sequence |
| Protein sequence |
