Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69423.t1 | XP_013462196.1 | 96.4 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.00E+00 | 1097 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69423.t1 | Q9FYG4 | 46.3 | 529 | 269 | 12 | 33 | 555 | 96 | 615 | 7.5e-127 | 455.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69423.t1 | A0A072V3I4 | 96.4 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.0e+00 | 1097.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048092 | MS.gene69423 | PPI |
| MS.gene69423 | MS.gene92577 | PPI |
| MS.gene69423 | MS.gene037665 | PPI |
| MS.gene69423 | MS.gene73248 | PPI |
| MS.gene024604 | MS.gene69423 | PPI |
| MS.gene050500 | MS.gene69423 | PPI |
| MS.gene22907 | MS.gene69423 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69423.t1 | MTR_3g113210 | 96.396 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1108 |
| MS.gene69423.t1 | MTR_1g023570 | 70.321 | 529 | 145 | 6 | 29 | 555 | 25 | 543 | 0.0 | 787 |
| MS.gene69423.t1 | MTR_6g004960 | 65.259 | 521 | 174 | 4 | 37 | 555 | 1 | 516 | 0.0 | 729 |
| MS.gene69423.t1 | MTR_7g114530 | 57.439 | 531 | 209 | 8 | 33 | 555 | 49 | 570 | 0.0 | 601 |
| MS.gene69423.t1 | MTR_5g038410 | 50.370 | 540 | 231 | 11 | 47 | 554 | 1 | 535 | 0.0 | 530 |
| MS.gene69423.t1 | MTR_8g102900 | 44.776 | 536 | 275 | 11 | 29 | 554 | 108 | 632 | 1.28e-156 | 462 |
| MS.gene69423.t1 | MTR_6g088300 | 43.636 | 550 | 281 | 11 | 24 | 554 | 45 | 584 | 5.46e-151 | 446 |
| MS.gene69423.t1 | MTR_3g075520 | 45.857 | 519 | 259 | 12 | 47 | 554 | 1 | 508 | 5.65e-151 | 443 |
| MS.gene69423.t1 | MTR_4g019520 | 44.186 | 559 | 276 | 15 | 2 | 554 | 3 | 531 | 5.01e-142 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69423.t1 | AT1G75620 | 63.089 | 531 | 178 | 8 | 29 | 554 | 29 | 546 | 0.0 | 676 |
| MS.gene69423.t1 | AT1G19900 | 61.364 | 528 | 193 | 7 | 30 | 554 | 28 | 547 | 0.0 | 667 |
| MS.gene69423.t1 | AT3G57620 | 52.355 | 552 | 235 | 8 | 17 | 554 | 9 | 546 | 0.0 | 593 |
| MS.gene69423.t1 | AT1G14430 | 53.321 | 542 | 225 | 10 | 28 | 554 | 36 | 564 | 0.0 | 556 |
| MS.gene69423.t1 | AT5G19580 | 43.856 | 529 | 282 | 9 | 32 | 555 | 76 | 594 | 3.03e-155 | 457 |
| MS.gene69423.t1 | AT1G67290 | 46.011 | 539 | 270 | 13 | 29 | 555 | 86 | 615 | 2.11e-154 | 456 |
| MS.gene69423.t1 | AT3G53950 | 43.962 | 530 | 271 | 13 | 33 | 555 | 34 | 544 | 7.09e-146 | 431 |
Find 142 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGACCCAACTAAACTATT+TGG | 0.191110 | 3.3:-93015551 | None:intergenic |
| GGGTCCGCTGGTTGGGAATC+AGG | 0.259329 | 3.3:+93015494 | MS.gene69423:CDS |
| CCATAACCCAACTCGGATTC+TGG | 0.259537 | 3.3:-93015388 | None:intergenic |
| TTTGCTGTAGCATCTTTCTT+TGG | 0.263378 | 3.3:-93015002 | None:intergenic |
| GAGCTGTGGGGTCCGCTGGT+TGG | 0.280888 | 3.3:+93015486 | MS.gene69423:CDS |
| AGCTGTGGGGTCCGCTGGTT+GGG | 0.303802 | 3.3:+93015487 | MS.gene69423:CDS |
| ATTTCAATTTCGTTTGTGAT+TGG | 0.306731 | 3.3:-93015790 | None:intergenic |
| TTTCAATTTCGTTTGTGATT+GGG | 0.313192 | 3.3:-93015789 | None:intergenic |
| GGTGCAAGAATGGGTGAATT+TGG | 0.321385 | 3.3:-93016010 | None:intergenic |
| TATAAACCAAATAGTTTAGT+TGG | 0.321989 | 3.3:+93015545 | MS.gene69423:CDS |
| GAGTTCCAAGTCAGGGTGTT+TGG | 0.329231 | 3.3:+93016068 | MS.gene69423:CDS |
| TCACCTTCATATTTAGAGAT+AGG | 0.343841 | 3.3:+93015728 | MS.gene69423:CDS |
| CCTGAACTAGGATAACTTCT+AGG | 0.356988 | 3.3:-93015209 | None:intergenic |
| GACGGTAGGGTCCTTGTTGC+CGG | 0.364460 | 3.3:+93015638 | MS.gene69423:CDS |
| CCTGACTTGGAACTCCTTGA+TGG | 0.365435 | 3.3:-93016060 | None:intergenic |
| AACATGCACTTACCATCTTC+TGG | 0.367278 | 3.3:-93014648 | None:intergenic |
| TTCGTTTGTGATTGGGGTGC+AGG | 0.367770 | 3.3:-93015782 | None:intergenic |
| TCATTTGTTTGTACAAGAAA+TGG | 0.367997 | 3.3:-93015041 | None:intergenic |
| TTCACCCATTCTTGCACCTC+CGG | 0.369292 | 3.3:+93016015 | MS.gene69423:CDS |
| CAATGATGTGCGTCCTATAA+TGG | 0.369536 | 3.3:+93015754 | MS.gene69423:CDS |
| CCTAGAAGTTATCCTAGTTC+AGG | 0.375775 | 3.3:+93015209 | MS.gene69423:CDS |
| GGTGCAGGAAACACCATTAT+AGG | 0.377276 | 3.3:-93015767 | None:intergenic |
| CCAGAATCCGAGTTGGGTTA+TGG | 0.377736 | 3.3:+93015388 | MS.gene69423:CDS |
| AGTTCCAAGTCAGGGTGTTT+GGG | 0.390210 | 3.3:+93016069 | MS.gene69423:CDS |
| GGATCTCCACCTGGTATTGT+AGG | 0.395977 | 3.3:-93015188 | None:intergenic |
| AATTCTTGCCAATCACAGTT+TGG | 0.398038 | 3.3:-93014608 | None:intergenic |
| TACATTCGTGGAATACTAGA+AGG | 0.412602 | 3.3:-93015590 | None:intergenic |
| AGAGGGATAAGAAGATGAAT+GGG | 0.417257 | 3.3:-93014191 | None:intergenic |
| ATCCATGTCCAAACTGTGAT+TGG | 0.418189 | 3.3:+93014600 | MS.gene69423:CDS |
| TAGCTGAAAATTAGAGTAGT+TGG | 0.420687 | 3.3:-93016093 | None:intergenic |
| GGGGTATTATTTACTATTTG+TGG | 0.425229 | 3.3:+93016036 | MS.gene69423:CDS |
| TTCAATTTCGTTTGTGATTG+GGG | 0.425388 | 3.3:-93015788 | None:intergenic |
| CGTCGTTGAAACCACCGGTT+TGG | 0.425942 | 3.3:-93014553 | None:intergenic |
| ATGATAATTTGTCTTCCATC+TGG | 0.430730 | 3.3:-93014945 | None:intergenic |
| GGTGGAGCTGTGGGGTCCGC+TGG | 0.431880 | 3.3:+93015482 | MS.gene69423:CDS |
| AGGAACACCATATGTTGGTT+TGG | 0.436279 | 3.3:-93014499 | None:intergenic |
| TAAAGAAACGGATTCAAAAC+CGG | 0.438673 | 3.3:-93015524 | None:intergenic |
| TTTAGTTGAAGCTGAGGTAA+TGG | 0.439525 | 3.3:+93015271 | MS.gene69423:CDS |
| GAGAGGGATAAGAAGATGAA+TGG | 0.442115 | 3.3:-93014192 | None:intergenic |
| TCACCCATTCTTGCACCTCC+GGG | 0.443200 | 3.3:+93016016 | MS.gene69423:CDS |
| ATAAACCAAATAGTTTAGTT+GGG | 0.445735 | 3.3:+93015546 | MS.gene69423:CDS |
| TTCAATGAATCAAAGGTTGT+TGG | 0.451529 | 3.3:+93015913 | MS.gene69423:CDS |
| TTGATTAATGGTGGAGCTGT+GGG | 0.457680 | 3.3:+93015473 | MS.gene69423:CDS |
| GATGGAAGACAAATTATCAT+TGG | 0.462604 | 3.3:+93014948 | MS.gene69423:CDS |
| TCCATCTGGTAGCATGTGAT+TGG | 0.466030 | 3.3:-93014931 | None:intergenic |
| CTATTTGGTTTATAAAGAAA+CGG | 0.475010 | 3.3:-93015536 | None:intergenic |
| CCATCTCCGGCTATAGCCGC+TGG | 0.479553 | 3.3:+93014245 | MS.gene69423:CDS |
| GGTTTGGATAAGAGTTCCGT+TGG | 0.479671 | 3.3:-93014537 | None:intergenic |
| ATCAACAAAACGTCGCCGTT+AGG | 0.480941 | 3.3:-93015455 | None:intergenic |
| CCATCAAGGAGTTCCAAGTC+AGG | 0.481604 | 3.3:+93016060 | MS.gene69423:CDS |
| ATTACCTCAGCTTCAACTAA+AGG | 0.482611 | 3.3:-93015269 | None:intergenic |
| CACCGTGACCGTTCCATCTC+CGG | 0.489892 | 3.3:+93014232 | MS.gene69423:CDS |
| ACGACATCTACCGTTGGATA+AGG | 0.490170 | 3.3:-93014384 | None:intergenic |
| TAGAAACTACGTCATATTCA+AGG | 0.491736 | 3.3:-93014454 | None:intergenic |
| AACGGAACTCTTATCCAAAC+CGG | 0.494388 | 3.3:+93014539 | MS.gene69423:CDS |
| GTTTGGATAAGAGTTCCGTT+GGG | 0.501961 | 3.3:-93014536 | None:intergenic |
| ATACCCCGGAGGTGCAAGAA+TGG | 0.506107 | 3.3:-93016020 | None:intergenic |
| CCATCTTCTGGCTGAGAGGC+CGG | 0.506753 | 3.3:-93014636 | None:intergenic |
| GAAGTTCCGTTGGAAACAAA+CGG | 0.507226 | 3.3:-93015691 | None:intergenic |
| AATCCTATCTCTAAATATGA+AGG | 0.509007 | 3.3:-93015731 | None:intergenic |
| TTGGGAATCAGGTCGTAATC+CGG | 0.509273 | 3.3:+93015505 | MS.gene69423:CDS |
| TCTTCATCCAAACCAACATA+TGG | 0.510007 | 3.3:+93014492 | MS.gene69423:CDS |
| AACCGACCAGAATCCGAGTT+GGG | 0.511154 | 3.3:+93015382 | MS.gene69423:CDS |
| GCTTCTAACCGAAGTTCCGT+TGG | 0.513496 | 3.3:-93015701 | None:intergenic |
| TACCCCGGAGGTGCAAGAAT+GGG | 0.517149 | 3.3:-93016019 | None:intergenic |
| TTACTATTTGTGGTCCATCA+AGG | 0.519156 | 3.3:+93016046 | MS.gene69423:CDS |
| GAAGCTGAGGTAATGGTTTG+TGG | 0.520107 | 3.3:+93015278 | MS.gene69423:CDS |
| TGGACCCAAACACCCTGACT+TGG | 0.521685 | 3.3:-93016073 | None:intergenic |
| GTTTGTGGTGGAGCTCCAAA+AGG | 0.521735 | 3.3:+93015293 | MS.gene69423:CDS |
| TGGGTTATGGAAACTATGCC+AGG | 0.521749 | 3.3:+93015401 | MS.gene69423:CDS |
| ACAGTTTGGACATGGATTGA+AGG | 0.522901 | 3.3:-93014594 | None:intergenic |
| TTGGTATTGCCACTTCAACT+TGG | 0.523039 | 3.3:-93015991 | None:intergenic |
| TGTCCACCAGCGGCTATAGC+CGG | 0.524473 | 3.3:-93014251 | None:intergenic |
| GTTTGTTTCCAACGGAACTT+CGG | 0.525030 | 3.3:+93015693 | MS.gene69423:CDS |
| AAGTTCCGTTGGAAACAAAC+GGG | 0.529792 | 3.3:-93015690 | None:intergenic |
| GTTGATTAATGGTGGAGCTG+TGG | 0.531889 | 3.3:+93015472 | MS.gene69423:CDS |
| GATCTCCACCTGGTATTGTA+GGG | 0.534802 | 3.3:-93015187 | None:intergenic |
| TGCCAATCACAGTTTGGACA+TGG | 0.534978 | 3.3:-93014602 | None:intergenic |
| GTAAAATTGTAATTTACATG+AGG | 0.535472 | 3.3:-93015668 | None:intergenic |
| ACGACGGAGACCGTACCGTT+AGG | 0.538246 | 3.3:+93014570 | MS.gene69423:CDS |
| ACCAACATATGGTGTTCCTC+CGG | 0.539323 | 3.3:+93014503 | MS.gene69423:CDS |
| GTTTCAAGTGAAGGCAACAT+TGG | 0.544359 | 3.3:+93015835 | MS.gene69423:CDS |
| TAAAATTGTAATTTACATGA+GGG | 0.545993 | 3.3:-93015667 | None:intergenic |
| GAAGGTTCGGTTTCAAGTGA+AGG | 0.547361 | 3.3:+93015826 | MS.gene69423:CDS |
| GGCTATAGCCGGAGATGGAA+CGG | 0.548026 | 3.3:-93014240 | None:intergenic |
| CCGGCCTCTCAGCCAGAAGA+TGG | 0.548508 | 3.3:+93014636 | MS.gene69423:CDS |
| AAAACAGCAGAACCTGAACT+AGG | 0.549812 | 3.3:-93015221 | None:intergenic |
| GCAGTTGAATGATACATTCG+TGG | 0.553293 | 3.3:-93015602 | None:intergenic |
| GGAAGACAAATTATCATTGG+AGG | 0.556162 | 3.3:+93014951 | MS.gene69423:CDS |
| ATCGGAGCTTTGAATACATG+TGG | 0.566801 | 3.3:+93015347 | MS.gene69423:CDS |
| CTATAGCCGCTGGTGGACAA+TGG | 0.567409 | 3.3:+93014255 | MS.gene69423:CDS |
| CCAGCGGCTATAGCCGGAGA+TGG | 0.568462 | 3.3:-93014245 | None:intergenic |
| AGCCGGAGATGGAACGGTCA+CGG | 0.577054 | 3.3:-93014234 | None:intergenic |
| AAAGCCTTTAGTTGAAGCTG+AGG | 0.581362 | 3.3:+93015265 | MS.gene69423:CDS |
| ATTTACATGAGGGTTGCTAC+CGG | 0.582071 | 3.3:-93015657 | None:intergenic |
| ACCGGAGGAACACCATATGT+TGG | 0.582162 | 3.3:-93014504 | None:intergenic |
| AGAAACTACGTCATATTCAA+GGG | 0.582942 | 3.3:-93014453 | None:intergenic |
| GTCTCCGTCGTTGAAACCAC+CGG | 0.584599 | 3.3:-93014558 | None:intergenic |
| ATCAACATACCAAGTTGAAG+TGG | 0.590631 | 3.3:+93015982 | MS.gene69423:CDS |
| GAGCTTTGAATACATGTGGT+CGG | 0.592341 | 3.3:+93015351 | MS.gene69423:CDS |
| AAAACATACCCTACAATACC+AGG | 0.592824 | 3.3:+93015179 | MS.gene69423:CDS |
| TTTGGATAAGAGTTCCGTTG+GGG | 0.597252 | 3.3:-93014535 | None:intergenic |
| ACCAATCACATGCTACCAGA+TGG | 0.598604 | 3.3:+93014930 | MS.gene69423:CDS |
| TCTCCGGCTATAGCCGCTGG+TGG | 0.600687 | 3.3:+93014248 | MS.gene69423:CDS |
| TAACCGACCAGAATCCGAGT+TGG | 0.603354 | 3.3:+93015381 | MS.gene69423:CDS |
| CTTACCATCTTCTGGCTGAG+AGG | 0.606260 | 3.3:-93014640 | None:intergenic |
| GTAGATATTATAATAATGAG+AGG | 0.610209 | 3.3:-93014209 | None:intergenic |
| TTGAGAATCCAAAATCAGTA+CGG | 0.610675 | 3.3:-93014355 | None:intergenic |
| TGGTTTGGATGAAGAGTGGT+CGG | 0.614894 | 3.3:-93014484 | None:intergenic |
| GATTGAAGGTCCTAACGGTA+CGG | 0.622829 | 3.3:-93014580 | None:intergenic |
| AACCCAACTCGGATTCTGGT+CGG | 0.628839 | 3.3:-93015384 | None:intergenic |
| CAGCTCTTACAAAACAACAT+TGG | 0.629515 | 3.3:+93014278 | MS.gene69423:CDS |
| ATTAACACGACATCTACCGT+TGG | 0.632840 | 3.3:-93014390 | None:intergenic |
| TCAAACTTATCCTTATCCAA+CGG | 0.635919 | 3.3:+93014374 | MS.gene69423:CDS |
| GAGGGTTGCTACCGGCAACA+AGG | 0.641296 | 3.3:-93015649 | None:intergenic |
| CACCCATTCTTGCACCTCCG+GGG | 0.644030 | 3.3:+93016017 | MS.gene69423:CDS |
| TATAATCAAACAAAATAGCA+CGG | 0.644345 | 3.3:-93015139 | None:intergenic |
| CATCAAGGAGTTCCAAGTCA+GGG | 0.650832 | 3.3:+93016061 | MS.gene69423:CDS |
| GTGTAGCAATTGCATATGCA+TGG | 0.651312 | 3.3:-93014309 | None:intergenic |
| ATAGTTTCCATAACCCAACT+CGG | 0.651608 | 3.3:-93015395 | None:intergenic |
| TAGATATTATAATAATGAGA+GGG | 0.654289 | 3.3:-93014208 | None:intergenic |
| ACATGGATTGAAGGTCCTAA+CGG | 0.659237 | 3.3:-93014585 | None:intergenic |
| AGGCGGTGCATACATTGTCA+CGG | 0.661155 | 3.3:-93015873 | None:intergenic |
| GGAACTCTTATCCAAACCGG+TGG | 0.663220 | 3.3:+93014542 | MS.gene69423:CDS |
| TGATTAATGGTGGAGCTGTG+GGG | 0.663789 | 3.3:+93015474 | MS.gene69423:CDS |
| ACAAATAGTAAATAATACCC+CGG | 0.667706 | 3.3:-93016034 | None:intergenic |
| GAGGGATAAGAAGATGAATG+GGG | 0.671217 | 3.3:-93014190 | None:intergenic |
| TCACTCATAACTCTTCCACC+TGG | 0.673279 | 3.3:-93015419 | None:intergenic |
| GAGCTGCCATTGTCCACCAG+CGG | 0.673603 | 3.3:-93014261 | None:intergenic |
| ATGTTGGTTTGGATGAAGAG+TGG | 0.675999 | 3.3:-93014488 | None:intergenic |
| ACGACCTGATTCCCAACCAG+CGG | 0.683895 | 3.3:-93015498 | None:intergenic |
| GTTTGATTATAACAGCAACA+AGG | 0.685381 | 3.3:+93015151 | MS.gene69423:CDS |
| GCTGAGGTAATGGTTTGTGG+TGG | 0.690816 | 3.3:+93015281 | MS.gene69423:CDS |
| CAAACCGGTGGTTTCAACGA+CGG | 0.697076 | 3.3:+93014554 | MS.gene69423:CDS |
| TTGGATAAGAGTTCCGTTGG+GGG | 0.703483 | 3.3:-93014534 | None:intergenic |
| GATTGGCAAGAATTCAACGC+CGG | 0.705232 | 3.3:+93014617 | MS.gene69423:CDS |
| TAACTTCTAGGATCTCCACC+TGG | 0.707322 | 3.3:-93015197 | None:intergenic |
| ACATACCCTACAATACCAGG+TGG | 0.726590 | 3.3:+93015182 | MS.gene69423:CDS |
| GTTATGGAAACTATGCCAGG+TGG | 0.735089 | 3.3:+93015404 | MS.gene69423:CDS |
| AATAGTAAATAATACCCCGG+AGG | 0.749616 | 3.3:-93016031 | None:intergenic |
| CGGAGATGGAACGGTCACGG+TGG | 0.752650 | 3.3:-93014231 | None:intergenic |
| AAAGAATGTGTGTTAAAAGG+CGG | 0.757682 | 3.3:-93015890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAATTTACATGA+GGG | - | chr3.3:93015670-93015689 | None:intergenic | 15.0% |
| !! | TAGATATTATAATAATGAGA+GGG | - | chr3.3:93014211-93014230 | None:intergenic | 15.0% |
| !! | TATTATTTACTATCAAACTA+AGG | - | chr3.3:93014859-93014878 | None:intergenic | 15.0% |
| !!! | ATCATTTCTTAGTATTTTTT+TGG | + | chr3.3:93014728-93014747 | MS.gene69423:intron | 15.0% |
| !! | ATAAACCAAATAGTTTAGTT+GGG | + | chr3.3:93015546-93015565 | MS.gene69423:CDS | 20.0% |
| !! | GTAAAATTGTAATTTACATG+AGG | - | chr3.3:93015671-93015690 | None:intergenic | 20.0% |
| !! | GTAGATATTATAATAATGAG+AGG | - | chr3.3:93014212-93014231 | None:intergenic | 20.0% |
| !! | TATAAACCAAATAGTTTAGT+TGG | + | chr3.3:93015545-93015564 | MS.gene69423:CDS | 20.0% |
| !! | TATAATCAAACAAAATAGCA+CGG | - | chr3.3:93015142-93015161 | None:intergenic | 20.0% |
| !! | TCTTATGAAAAAACATTACA+AGG | + | chr3.3:93015317-93015336 | MS.gene69423:CDS | 20.0% |
| !!! | ATTCTTTTTCAATGAATCAA+AGG | + | chr3.3:93015906-93015925 | MS.gene69423:CDS | 20.0% |
| !!! | CTATTTGGTTTATAAAGAAA+CGG | - | chr3.3:93015539-93015558 | None:intergenic | 20.0% |
| ! | AATAAGAAATATAAGTCCAG+TGG | - | chr3.3:93014817-93014836 | None:intergenic | 25.0% |
| ! | AATCCTATCTCTAAATATGA+AGG | - | chr3.3:93015734-93015753 | None:intergenic | 25.0% |
| ! | ACAAATAGTAAATAATACCC+CGG | - | chr3.3:93016037-93016056 | None:intergenic | 25.0% |
| ! | AGTAGTAGTAAAAATGTTGT+TGG | + | chr3.3:93015950-93015969 | MS.gene69423:CDS | 25.0% |
| ! | ATAAGAAATATAAGTCCAGT+GGG | - | chr3.3:93014816-93014835 | None:intergenic | 25.0% |
| ! | ATTTCAATTTCGTTTGTGAT+TGG | - | chr3.3:93015793-93015812 | None:intergenic | 25.0% |
| ! | GAAAAAGAATGTGTGTTAAA+AGG | - | chr3.3:93015896-93015915 | None:intergenic | 25.0% |
| ! | GAAGTAACTATATCTCTAAT+AGG | + | chr3.3:93014901-93014920 | MS.gene69423:intron | 25.0% |
| ! | TAAGTGCATGTTTAGATTAA+CGG | + | chr3.3:93014659-93014678 | MS.gene69423:intron | 25.0% |
| ! | TCATTTGTTTGTACAAGAAA+TGG | - | chr3.3:93015044-93015063 | None:intergenic | 25.0% |
| ! | TCTACATTGAGAAAAACAAA+CGG | - | chr3.3:93015092-93015111 | None:intergenic | 25.0% |
| ! | TTTCAATTTCGTTTGTGATT+GGG | - | chr3.3:93015792-93015811 | None:intergenic | 25.0% |
| !!! | ACATTACAAGGTAGTTTTAT+CGG | + | chr3.3:93015329-93015348 | MS.gene69423:CDS | 25.0% |
| !!! | GTTTTTTCATAAGAACCTTT+TGG | - | chr3.3:93015311-93015330 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCTCAATGTAGA+TGG | + | chr3.3:93015092-93015111 | MS.gene69423:CDS | 25.0% |
| AAAGAATGTGTGTTAAAAGG+CGG | - | chr3.3:93015893-93015912 | None:intergenic | 30.0% | |
| AGAAACTACGTCATATTCAA+GGG | - | chr3.3:93014456-93014475 | None:intergenic | 30.0% | |
| CGTAATTATTCTTTCAAAGC+TGG | - | chr3.3:93014685-93014704 | None:intergenic | 30.0% | |
| CTACATTGAGAAAAACAAAC+GGG | - | chr3.3:93015091-93015110 | None:intergenic | 30.0% | |
| GAAATACGCTCAAAAATTGA+AGG | + | chr3.3:93015808-93015827 | MS.gene69423:CDS | 30.0% | |
| GATGGAAGACAAATTATCAT+TGG | + | chr3.3:93014948-93014967 | MS.gene69423:CDS | 30.0% | |
| GTTTGATTATAACAGCAACA+AGG | + | chr3.3:93015151-93015170 | MS.gene69423:CDS | 30.0% | |
| TAGAAACTACGTCATATTCA+AGG | - | chr3.3:93014457-93014476 | None:intergenic | 30.0% | |
| TCAAACTTATCCTTATCCAA+CGG | + | chr3.3:93014374-93014393 | MS.gene69423:CDS | 30.0% | |
| TCACCTTCATATTTAGAGAT+AGG | + | chr3.3:93015728-93015747 | MS.gene69423:CDS | 30.0% | |
| TTCAATGAATCAAAGGTTGT+TGG | + | chr3.3:93015913-93015932 | MS.gene69423:CDS | 30.0% | |
| TTCAATTTCGTTTGTGATTG+GGG | - | chr3.3:93015791-93015810 | None:intergenic | 30.0% | |
| TTGAGAATCCAAAATCAGTA+CGG | - | chr3.3:93014358-93014377 | None:intergenic | 30.0% | |
| ! | ATGATAATTTGTCTTCCATC+TGG | - | chr3.3:93014948-93014967 | None:intergenic | 30.0% |
| ! | GACATGATTTTACTTCCTAA+CGG | + | chr3.3:93015440-93015459 | MS.gene69423:CDS | 30.0% |
| ! | GGGGTATTATTTACTATTTG+TGG | + | chr3.3:93016036-93016055 | MS.gene69423:CDS | 30.0% |
| ! | TAAAGAAACGGATTCAAAAC+CGG | - | chr3.3:93015527-93015546 | None:intergenic | 30.0% |
| !! | TTTTTCACAACTTGTTCTTG+TGG | - | chr3.3:93014416-93014435 | None:intergenic | 30.0% |
| !!! | ATTTTTGACCGTACTGATTT+TGG | + | chr3.3:93014347-93014366 | MS.gene69423:CDS | 30.0% |
| AAAACATACCCTACAATACC+AGG | + | chr3.3:93015179-93015198 | MS.gene69423:CDS | 35.0% | |
| AATAGTAAATAATACCCCGG+AGG | - | chr3.3:93016034-93016053 | None:intergenic | 35.0% | |
| AATTCTTGCCAATCACAGTT+TGG | - | chr3.3:93014611-93014630 | None:intergenic | 35.0% | |
| ACGCTCAAAAATTGAAGGTT+CGG | + | chr3.3:93015813-93015832 | MS.gene69423:CDS | 35.0% | |
| AGAGGGATAAGAAGATGAAT+GGG | - | chr3.3:93014194-93014213 | None:intergenic | 35.0% | |
| ATAGTTTCCATAACCCAACT+CGG | - | chr3.3:93015398-93015417 | None:intergenic | 35.0% | |
| ATTACCTCAGCTTCAACTAA+AGG | - | chr3.3:93015272-93015291 | None:intergenic | 35.0% | |
| CAGCTCTTACAAAACAACAT+TGG | + | chr3.3:93014278-93014297 | MS.gene69423:CDS | 35.0% | |
| CTTGACCCAACTAAACTATT+TGG | - | chr3.3:93015554-93015573 | None:intergenic | 35.0% | |
| GGAAGACAAATTATCATTGG+AGG | + | chr3.3:93014951-93014970 | MS.gene69423:CDS | 35.0% | |
| TACATTCGTGGAATACTAGA+AGG | - | chr3.3:93015593-93015612 | None:intergenic | 35.0% | |
| TACGGTCAAAAATGATGACA+CGG | - | chr3.3:93014340-93014359 | None:intergenic | 35.0% | |
| TCTTCATCCAAACCAACATA+TGG | + | chr3.3:93014492-93014511 | MS.gene69423:CDS | 35.0% | |
| TTACTATTTGTGGTCCATCA+AGG | + | chr3.3:93016046-93016065 | MS.gene69423:CDS | 35.0% | |
| TTTAGTTGAAGCTGAGGTAA+TGG | + | chr3.3:93015271-93015290 | MS.gene69423:CDS | 35.0% | |
| ! | ATCAACATACCAAGTTGAAG+TGG | + | chr3.3:93015982-93016001 | MS.gene69423:CDS | 35.0% |
| ! | TTTGCTGTAGCATCTTTCTT+TGG | - | chr3.3:93015005-93015024 | None:intergenic | 35.0% |
| ! | TTTTACCCGTTTGTTTCCAA+CGG | + | chr3.3:93015685-93015704 | MS.gene69423:CDS | 35.0% |
| !! | GACGTTTTGTTGATTAATGG+TGG | + | chr3.3:93015464-93015483 | MS.gene69423:CDS | 35.0% |
| AAAACAGCAGAACCTGAACT+AGG | - | chr3.3:93015224-93015243 | None:intergenic | 40.0% | |
| AAAGCCTTTAGTTGAAGCTG+AGG | + | chr3.3:93015265-93015284 | MS.gene69423:CDS | 40.0% | |
| AACATGCACTTACCATCTTC+TGG | - | chr3.3:93014651-93014670 | None:intergenic | 40.0% | |
| AACGGAACTCTTATCCAAAC+CGG | + | chr3.3:93014539-93014558 | MS.gene69423:CDS | 40.0% | |
| AAGTTCCGTTGGAAACAAAC+GGG | - | chr3.3:93015693-93015712 | None:intergenic | 40.0% | |
| ATCCATGTCCAAACTGTGAT+TGG | + | chr3.3:93014600-93014619 | MS.gene69423:CDS | 40.0% | |
| ATTAACACGACATCTACCGT+TGG | - | chr3.3:93014393-93014412 | None:intergenic | 40.0% | |
| ATTTACATGAGGGTTGCTAC+CGG | - | chr3.3:93015660-93015679 | None:intergenic | 40.0% | |
| CAATGATGTGCGTCCTATAA+TGG | + | chr3.3:93015754-93015773 | MS.gene69423:CDS | 40.0% | |
| CCTAGAAGTTATCCTAGTTC+AGG | + | chr3.3:93015209-93015228 | MS.gene69423:CDS | 40.0% | |
| CCTGAACTAGGATAACTTCT+AGG | - | chr3.3:93015212-93015231 | None:intergenic | 40.0% | |
| GAAGTTCCGTTGGAAACAAA+CGG | - | chr3.3:93015694-93015713 | None:intergenic | 40.0% | |
| GAGAGGGATAAGAAGATGAA+TGG | - | chr3.3:93014195-93014214 | None:intergenic | 40.0% | |
| GAGGGATAAGAAGATGAATG+GGG | - | chr3.3:93014193-93014212 | None:intergenic | 40.0% | |
| GCAGTTGAATGATACATTCG+TGG | - | chr3.3:93015605-93015624 | None:intergenic | 40.0% | |
| GGCAACATTGGTGAAAAACA+TGG | + | chr3.3:93015847-93015866 | MS.gene69423:CDS | 40.0% | |
| GTGTAGCAATTGCATATGCA+TGG | - | chr3.3:93014312-93014331 | None:intergenic | 40.0% | |
| GTTTGGATAAGAGTTCCGTT+GGG | - | chr3.3:93014539-93014558 | None:intergenic | 40.0% | |
| GTTTGTTTCCAACGGAACTT+CGG | + | chr3.3:93015693-93015712 | MS.gene69423:CDS | 40.0% | |
| TTTGGATAAGAGTTCCGTTG+GGG | - | chr3.3:93014538-93014557 | None:intergenic | 40.0% | |
| ! | ACAGTTTGGACATGGATTGA+AGG | - | chr3.3:93014597-93014616 | None:intergenic | 40.0% |
| ! | ACATGGATTGAAGGTCCTAA+CGG | - | chr3.3:93014588-93014607 | None:intergenic | 40.0% |
| ! | AGGAACACCATATGTTGGTT+TGG | - | chr3.3:93014502-93014521 | None:intergenic | 40.0% |
| ! | GGCTTTTGTAAGTTTCTCAG+AGG | - | chr3.3:93015251-93015270 | None:intergenic | 40.0% |
| ! | GTTTCAAGTGAAGGCAACAT+TGG | + | chr3.3:93015835-93015854 | MS.gene69423:CDS | 40.0% |
| ! | TGTTTTGCTAAGAGACGGTA+GGG | + | chr3.3:93015625-93015644 | MS.gene69423:CDS | 40.0% |
| ! | TTGATTAATGGTGGAGCTGT+GGG | + | chr3.3:93015473-93015492 | MS.gene69423:CDS | 40.0% |
| ! | TTGGTATTGCCACTTCAACT+TGG | - | chr3.3:93015994-93016013 | None:intergenic | 40.0% |
| !! | ATCGGAGCTTTGAATACATG+TGG | + | chr3.3:93015347-93015366 | MS.gene69423:CDS | 40.0% |
| !! | ATGTTGGTTTGGATGAAGAG+TGG | - | chr3.3:93014491-93014510 | None:intergenic | 40.0% |
| !! | GAGCTTTGAATACATGTGGT+CGG | + | chr3.3:93015351-93015370 | MS.gene69423:CDS | 40.0% |
| !! | GGCGACGTTTTGTTGATTAA+TGG | + | chr3.3:93015461-93015480 | MS.gene69423:CDS | 40.0% |
| !!! | ACTGCTGTTTTGCTAAGAGA+CGG | + | chr3.3:93015620-93015639 | MS.gene69423:CDS | 40.0% |
| ACATACCCTACAATACCAGG+TGG | + | chr3.3:93015182-93015201 | MS.gene69423:CDS | 45.0% | |
| ACCAACATATGGTGTTCCTC+CGG | + | chr3.3:93014503-93014522 | MS.gene69423:CDS | 45.0% | |
| ACCAATCACATGCTACCAGA+TGG | + | chr3.3:93014930-93014949 | MS.gene69423:CDS | 45.0% | |
| ACGACATCTACCGTTGGATA+AGG | - | chr3.3:93014387-93014406 | None:intergenic | 45.0% | |
| ATCAACAAAACGTCGCCGTT+AGG | - | chr3.3:93015458-93015477 | None:intergenic | 45.0% | |
| CATCAAGGAGTTCCAAGTCA+GGG | + | chr3.3:93016061-93016080 | MS.gene69423:CDS | 45.0% | |
| GATCTCCACCTGGTATTGTA+GGG | - | chr3.3:93015190-93015209 | None:intergenic | 45.0% | |
| GATTGAAGGTCCTAACGGTA+CGG | - | chr3.3:93014583-93014602 | None:intergenic | 45.0% | |
| GATTGGCAAGAATTCAACGC+CGG | + | chr3.3:93014617-93014636 | MS.gene69423:CDS | 45.0% | |
| GGTGCAAGAATGGGTGAATT+TGG | - | chr3.3:93016013-93016032 | None:intergenic | 45.0% | |
| GGTGCAGGAAACACCATTAT+AGG | - | chr3.3:93015770-93015789 | None:intergenic | 45.0% | |
| GGTTTGGATAAGAGTTCCGT+TGG | - | chr3.3:93014540-93014559 | None:intergenic | 45.0% | |
| GTTATGGAAACTATGCCAGG+TGG | + | chr3.3:93015404-93015423 | MS.gene69423:CDS | 45.0% | |
| TCACTCATAACTCTTCCACC+TGG | - | chr3.3:93015422-93015441 | None:intergenic | 45.0% | |
| TCCATCTGGTAGCATGTGAT+TGG | - | chr3.3:93014934-93014953 | None:intergenic | 45.0% | |
| TGCCAATCACAGTTTGGACA+TGG | - | chr3.3:93014605-93014624 | None:intergenic | 45.0% | |
| TGGGTTATGGAAACTATGCC+AGG | + | chr3.3:93015401-93015420 | MS.gene69423:CDS | 45.0% | |
| TTGGATAAGAGTTCCGTTGG+GGG | - | chr3.3:93014537-93014556 | None:intergenic | 45.0% | |
| TTGGGAATCAGGTCGTAATC+CGG | + | chr3.3:93015505-93015524 | MS.gene69423:CDS | 45.0% | |
| TTGTTCTTAGCTAAGCCCAC+TGG | + | chr3.3:93014798-93014817 | MS.gene69423:intron | 45.0% | |
| ! | AGTTCCAAGTCAGGGTGTTT+GGG | + | chr3.3:93016069-93016088 | MS.gene69423:CDS | 45.0% |
| ! | CTGTTTTGCTAAGAGACGGT+AGG | + | chr3.3:93015624-93015643 | MS.gene69423:CDS | 45.0% |
| ! | GAAGCTGAGGTAATGGTTTG+TGG | + | chr3.3:93015278-93015297 | MS.gene69423:CDS | 45.0% |
| ! | GAAGGTTCGGTTTCAAGTGA+AGG | + | chr3.3:93015826-93015845 | MS.gene69423:CDS | 45.0% |
| ! | GTTGATTAATGGTGGAGCTG+TGG | + | chr3.3:93015472-93015491 | MS.gene69423:CDS | 45.0% |
| ! | TGATTAATGGTGGAGCTGTG+GGG | + | chr3.3:93015474-93015493 | MS.gene69423:CDS | 45.0% |
| ! | TGGTTTGGATGAAGAGTGGT+CGG | - | chr3.3:93014487-93014506 | None:intergenic | 45.0% |
| !! | TAACTTCTAGGATCTCCACC+TGG | - | chr3.3:93015200-93015219 | None:intergenic | 45.0% |
| !!! | ATGATTTTTTTATTAAAATA+AGG | - | chr3.3:93014713-93014732 | None:intergenic | 5.0% |
| AACCCAACTCGGATTCTGGT+CGG | - | chr3.3:93015387-93015406 | None:intergenic | 50.0% | |
| AACCGACCAGAATCCGAGTT+GGG | + | chr3.3:93015382-93015401 | MS.gene69423:CDS | 50.0% | |
| ACCGGAGGAACACCATATGT+TGG | - | chr3.3:93014507-93014526 | None:intergenic | 50.0% | |
| AGGCGGTGCATACATTGTCA+CGG | - | chr3.3:93015876-93015895 | None:intergenic | 50.0% | |
| CAAACCGGTGGTTTCAACGA+CGG | + | chr3.3:93014554-93014573 | MS.gene69423:CDS | 50.0% | |
| CCATAACCCAACTCGGATTC+TGG | - | chr3.3:93015391-93015410 | None:intergenic | 50.0% | |
| CCATCAAGGAGTTCCAAGTC+AGG | + | chr3.3:93016060-93016079 | MS.gene69423:CDS | 50.0% | |
| GCTTCTAACCGAAGTTCCGT+TGG | - | chr3.3:93015704-93015723 | None:intergenic | 50.0% | |
| GGAACTCTTATCCAAACCGG+TGG | + | chr3.3:93014542-93014561 | MS.gene69423:CDS | 50.0% | |
| GGATCTCCACCTGGTATTGT+AGG | - | chr3.3:93015191-93015210 | None:intergenic | 50.0% | |
| TAACCGACCAGAATCCGAGT+TGG | + | chr3.3:93015381-93015400 | MS.gene69423:CDS | 50.0% | |
| TTCACCCATTCTTGCACCTC+CGG | + | chr3.3:93016015-93016034 | MS.gene69423:CDS | 50.0% | |
| TTCGTTTGTGATTGGGGTGC+AGG | - | chr3.3:93015785-93015804 | None:intergenic | 50.0% | |
| ! | CCAGAATCCGAGTTGGGTTA+TGG | + | chr3.3:93015388-93015407 | MS.gene69423:CDS | 50.0% |
| ! | CTTACCATCTTCTGGCTGAG+AGG | - | chr3.3:93014643-93014662 | None:intergenic | 50.0% |
| ! | GAGTTCCAAGTCAGGGTGTT+TGG | + | chr3.3:93016068-93016087 | MS.gene69423:CDS | 50.0% |
| ! | GCTGAGGTAATGGTTTGTGG+TGG | + | chr3.3:93015281-93015300 | MS.gene69423:CDS | 50.0% |
| ! | GTTTGTGGTGGAGCTCCAAA+AGG | + | chr3.3:93015293-93015312 | MS.gene69423:CDS | 50.0% |
| !! | CCTGACTTGGAACTCCTTGA+TGG | - | chr3.3:93016063-93016082 | None:intergenic | 50.0% |
| AAGAGTTCCGTTGGGGGAGA+CGG | - | chr3.3:93014531-93014550 | None:intergenic | 55.0% | |
| ACGACCTGATTCCCAACCAG+CGG | - | chr3.3:93015501-93015520 | None:intergenic | 55.0% | |
| GGCTATAGCCGGAGATGGAA+CGG | - | chr3.3:93014243-93014262 | None:intergenic | 55.0% | |
| GTCTCCGTCGTTGAAACCAC+CGG | - | chr3.3:93014561-93014580 | None:intergenic | 55.0% | |
| TCACCCATTCTTGCACCTCC+GGG | + | chr3.3:93016016-93016035 | MS.gene69423:CDS | 55.0% | |
| TGGACCCAAACACCCTGACT+TGG | - | chr3.3:93016076-93016095 | None:intergenic | 55.0% | |
| ! | ATACCCCGGAGGTGCAAGAA+TGG | - | chr3.3:93016023-93016042 | None:intergenic | 55.0% |
| ! | CGTCGTTGAAACCACCGGTT+TGG | - | chr3.3:93014556-93014575 | None:intergenic | 55.0% |
| ! | CTATAGCCGCTGGTGGACAA+TGG | + | chr3.3:93014255-93014274 | MS.gene69423:CDS | 55.0% |
| ! | TACCCCGGAGGTGCAAGAAT+GGG | - | chr3.3:93016022-93016041 | None:intergenic | 55.0% |
| ACGACGGAGACCGTACCGTT+AGG | + | chr3.3:93014570-93014589 | MS.gene69423:CDS | 60.0% | |
| AGCCGGAGATGGAACGGTCA+CGG | - | chr3.3:93014237-93014256 | None:intergenic | 60.0% | |
| CACCCATTCTTGCACCTCCG+GGG | + | chr3.3:93016017-93016036 | MS.gene69423:CDS | 60.0% | |
| CACCGTGACCGTTCCATCTC+CGG | + | chr3.3:93014232-93014251 | MS.gene69423:CDS | 60.0% | |
| GACGGTAGGGTCCTTGTTGC+CGG | + | chr3.3:93015638-93015657 | MS.gene69423:CDS | 60.0% | |
| GAGCTGCCATTGTCCACCAG+CGG | - | chr3.3:93014264-93014283 | None:intergenic | 60.0% | |
| GAGGGTTGCTACCGGCAACA+AGG | - | chr3.3:93015652-93015671 | None:intergenic | 60.0% | |
| TGTCCACCAGCGGCTATAGC+CGG | - | chr3.3:93014254-93014273 | None:intergenic | 60.0% | |
| ! | CCATCTTCTGGCTGAGAGGC+CGG | - | chr3.3:93014639-93014658 | None:intergenic | 60.0% |
| CCAGCGGCTATAGCCGGAGA+TGG | - | chr3.3:93014248-93014267 | None:intergenic | 65.0% | |
| CCATCTCCGGCTATAGCCGC+TGG | + | chr3.3:93014245-93014264 | MS.gene69423:CDS | 65.0% | |
| CCGGCCTCTCAGCCAGAAGA+TGG | + | chr3.3:93014636-93014655 | MS.gene69423:CDS | 65.0% | |
| CGGAGATGGAACGGTCACGG+TGG | - | chr3.3:93014234-93014253 | None:intergenic | 65.0% | |
| TCCGGTTCCGTCTCCCCCAA+CGG | + | chr3.3:93014521-93014540 | MS.gene69423:CDS | 65.0% | |
| TCCGTTGGGGGAGACGGAAC+CGG | - | chr3.3:93014525-93014544 | None:intergenic | 65.0% | |
| TCTCCGGCTATAGCCGCTGG+TGG | + | chr3.3:93014248-93014267 | MS.gene69423:CDS | 65.0% | |
| ! | AGCTGTGGGGTCCGCTGGTT+GGG | + | chr3.3:93015487-93015506 | MS.gene69423:CDS | 65.0% |
| ! | GGGTCCGCTGGTTGGGAATC+AGG | + | chr3.3:93015494-93015513 | MS.gene69423:CDS | 65.0% |
| GAGCTGTGGGGTCCGCTGGT+TGG | + | chr3.3:93015486-93015505 | MS.gene69423:CDS | 70.0% | |
| GTTGGGGGAGACGGAACCGG+AGG | - | chr3.3:93014522-93014541 | None:intergenic | 70.0% | |
| GGTGGAGCTGTGGGGTCCGC+TGG | + | chr3.3:93015482-93015501 | MS.gene69423:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93014173 | 93016105 | 93014173 | ID=MS.gene69423 |
| chr3.3 | mRNA | 93014173 | 93016105 | 93014173 | ID=MS.gene69423.t1;Parent=MS.gene69423 |
| chr3.3 | exon | 93014173 | 93014657 | 93014173 | ID=MS.gene69423.t1.exon1;Parent=MS.gene69423.t1 |
| chr3.3 | CDS | 93014173 | 93014657 | 93014173 | ID=cds.MS.gene69423.t1;Parent=MS.gene69423.t1 |
| chr3.3 | exon | 93014923 | 93016105 | 93014923 | ID=MS.gene69423.t1.exon2;Parent=MS.gene69423.t1 |
| chr3.3 | CDS | 93014923 | 93016105 | 93014923 | ID=cds.MS.gene69423.t1;Parent=MS.gene69423.t1 |
| Gene Sequence |
| Protein sequence |
