Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064736.t1 | XP_013462196.1 | 96.4 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.00E+00 | 1094 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064736.t1 | Q9FYG4 | 45.9 | 529 | 271 | 12 | 33 | 555 | 96 | 615 | 8.3e-126 | 452.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064736.t1 | A0A072V3I4 | 96.4 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.0e+00 | 1094.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050500 | MS.gene064736 | PPI |
| MS.gene064736 | MS.gene037665 | PPI |
| MS.gene024604 | MS.gene064736 | PPI |
| MS.gene048092 | MS.gene064736 | PPI |
| MS.gene73248 | MS.gene064736 | PPI |
| MS.gene22907 | MS.gene064736 | PPI |
| MS.gene92577 | MS.gene064736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064736.t1 | MTR_3g113210 | 96.396 | 555 | 20 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1106 |
| MS.gene064736.t1 | MTR_1g023570 | 70.321 | 529 | 145 | 6 | 29 | 555 | 25 | 543 | 0.0 | 785 |
| MS.gene064736.t1 | MTR_6g004960 | 65.067 | 521 | 175 | 4 | 37 | 555 | 1 | 516 | 0.0 | 730 |
| MS.gene064736.t1 | MTR_7g114530 | 57.439 | 531 | 209 | 8 | 33 | 555 | 49 | 570 | 0.0 | 598 |
| MS.gene064736.t1 | MTR_5g038410 | 50.370 | 540 | 231 | 11 | 47 | 554 | 1 | 535 | 0.0 | 527 |
| MS.gene064736.t1 | MTR_8g102900 | 44.403 | 536 | 277 | 11 | 29 | 554 | 108 | 632 | 2.90e-155 | 458 |
| MS.gene064736.t1 | MTR_3g075520 | 45.665 | 519 | 260 | 12 | 47 | 554 | 1 | 508 | 4.75e-151 | 443 |
| MS.gene064736.t1 | MTR_6g088300 | 43.273 | 550 | 283 | 11 | 24 | 554 | 45 | 584 | 2.26e-149 | 442 |
| MS.gene064736.t1 | MTR_4g019520 | 44.007 | 559 | 277 | 15 | 2 | 554 | 3 | 531 | 3.48e-141 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064736.t1 | AT1G75620 | 62.500 | 536 | 183 | 8 | 24 | 554 | 24 | 546 | 0.0 | 673 |
| MS.gene064736.t1 | AT1G19900 | 60.985 | 528 | 195 | 7 | 30 | 554 | 28 | 547 | 0.0 | 663 |
| MS.gene064736.t1 | AT3G57620 | 52.355 | 552 | 235 | 8 | 17 | 554 | 9 | 546 | 0.0 | 596 |
| MS.gene064736.t1 | AT1G14430 | 52.952 | 542 | 227 | 10 | 28 | 554 | 36 | 564 | 0.0 | 553 |
| MS.gene064736.t1 | AT5G19580 | 43.478 | 529 | 284 | 9 | 32 | 555 | 76 | 594 | 8.82e-154 | 453 |
| MS.gene064736.t1 | AT1G67290 | 45.640 | 539 | 272 | 13 | 29 | 555 | 86 | 615 | 4.15e-153 | 452 |
| MS.gene064736.t1 | AT3G53950 | 43.962 | 530 | 271 | 13 | 33 | 555 | 34 | 544 | 5.09e-145 | 429 |
Find 143 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGAAGGTTCGGTTTC+AGG | 0.153751 | 3.4:+97669484 | MS.gene064736:CDS |
| CTTGACCCAACTAAACTATT+TGG | 0.191110 | 3.4:-97669215 | None:intergenic |
| GGGTCCGCTGGTTGGGAATC+AGG | 0.259329 | 3.4:+97669158 | MS.gene064736:CDS |
| CCATAACCCAACTCGGATTC+TGG | 0.259537 | 3.4:-97669052 | None:intergenic |
| TTTGCTGTAGCATCTTTCTT+TGG | 0.263378 | 3.4:-97668666 | None:intergenic |
| GAGCTGTGGGGTCCGCTGGT+TGG | 0.280888 | 3.4:+97669150 | MS.gene064736:CDS |
| AGCTGTGGGGTCCGCTGGTT+GGG | 0.303802 | 3.4:+97669151 | MS.gene064736:CDS |
| GAGAAAGAATGTGTGTTAAA+AGG | 0.305651 | 3.4:-97669557 | None:intergenic |
| ATTTCAATTTCGTTTGTGAT+TGG | 0.306731 | 3.4:-97669454 | None:intergenic |
| TTTCAATTTCGTTTGTGATT+GGG | 0.313192 | 3.4:-97669453 | None:intergenic |
| GGTGCAAGAATGGGTGAATT+TGG | 0.321385 | 3.4:-97669674 | None:intergenic |
| TATAAACCAAATAGTTTAGT+TGG | 0.321989 | 3.4:+97669209 | MS.gene064736:CDS |
| GAGTTCCAAGTCAGGGTGTT+TGG | 0.329231 | 3.4:+97669732 | MS.gene064736:CDS |
| TCACCTTCATATTTAGAGAT+AGG | 0.343841 | 3.4:+97669392 | MS.gene064736:CDS |
| CTCAATGAATCAAAGGTTGT+TGG | 0.356448 | 3.4:+97669577 | MS.gene064736:CDS |
| CCTGAACTAGGATAACTTCT+AGG | 0.356988 | 3.4:-97668873 | None:intergenic |
| GACGGTAGGGTCCTTGTTGC+CGG | 0.364460 | 3.4:+97669302 | MS.gene064736:CDS |
| CCTGACTTGGAACTCCTTGA+TGG | 0.365435 | 3.4:-97669724 | None:intergenic |
| AACATGCACTTACCATCTTC+TGG | 0.367278 | 3.4:-97668353 | None:intergenic |
| TTCGTTTGTGATTGGGGTGC+AGG | 0.367770 | 3.4:-97669446 | None:intergenic |
| TCATTTGTTTGTACAAGAAA+TGG | 0.367997 | 3.4:-97668705 | None:intergenic |
| TTCACCCATTCTTGCACCTC+CGG | 0.369292 | 3.4:+97669679 | MS.gene064736:CDS |
| CAATGATGTGCGTCCTATAA+TGG | 0.369536 | 3.4:+97669418 | MS.gene064736:CDS |
| CCTAGAAGTTATCCTAGTTC+AGG | 0.375775 | 3.4:+97668873 | MS.gene064736:CDS |
| GGTGCAGGAAACACCATTAT+AGG | 0.377276 | 3.4:-97669431 | None:intergenic |
| CCAGAATCCGAGTTGGGTTA+TGG | 0.377736 | 3.4:+97669052 | MS.gene064736:CDS |
| AGTTCCAAGTCAGGGTGTTT+GGG | 0.390210 | 3.4:+97669733 | MS.gene064736:CDS |
| GGATCTCCACCTGGTATTGT+AGG | 0.395977 | 3.4:-97668852 | None:intergenic |
| AATTCTTGCCAATCACAGTT+TGG | 0.398038 | 3.4:-97668313 | None:intergenic |
| AGGAACACCAGATGTTAGTT+TGG | 0.402465 | 3.4:-97668204 | None:intergenic |
| AGAGGGATAAGAAGATGAAT+GGG | 0.417257 | 3.4:-97667896 | None:intergenic |
| ATCCATGTCCAAACTGTGAT+TGG | 0.418189 | 3.4:+97668305 | MS.gene064736:CDS |
| TAGCTGAAAATTAGAGTAGT+TGG | 0.420687 | 3.4:-97669757 | None:intergenic |
| GGGGTATTATTTACTATTTG+TGG | 0.425229 | 3.4:+97669700 | MS.gene064736:CDS |
| TTCAATTTCGTTTGTGATTG+GGG | 0.425388 | 3.4:-97669452 | None:intergenic |
| CGTCGTTGAAACCACCGGTT+TGG | 0.425942 | 3.4:-97668258 | None:intergenic |
| ATGATAATTTGTCTTCCATC+TGG | 0.430730 | 3.4:-97668609 | None:intergenic |
| GGTGGAGCTGTGGGGTCCGC+TGG | 0.431880 | 3.4:+97669146 | MS.gene064736:CDS |
| TAAAGAAACGGATTCAAAAC+CGG | 0.438673 | 3.4:-97669188 | None:intergenic |
| GAGAGGGATAAGAAGATGAA+TGG | 0.442115 | 3.4:-97667897 | None:intergenic |
| TCACCCATTCTTGCACCTCC+GGG | 0.443200 | 3.4:+97669680 | MS.gene064736:CDS |
| CCATCTCCGGCTATAGCCGC+TGG | 0.443224 | 3.4:+97667950 | MS.gene064736:CDS |
| ATAAACCAAATAGTTTAGTT+GGG | 0.445735 | 3.4:+97669210 | MS.gene064736:CDS |
| ATTACCTCAGCTTCAACTAA+AGG | 0.447654 | 3.4:-97668933 | None:intergenic |
| TTGATTAATGGTGGAGCTGT+GGG | 0.457680 | 3.4:+97669137 | MS.gene064736:CDS |
| GATGGAAGACAAATTATCAT+TGG | 0.462604 | 3.4:+97668612 | MS.gene064736:CDS |
| TCCATCTGGTAGCATGTGAT+TGG | 0.466030 | 3.4:-97668595 | None:intergenic |
| CACCGTGACGCTTCCATCTC+CGG | 0.471512 | 3.4:+97667937 | MS.gene064736:CDS |
| CTATTTGGTTTATAAAGAAA+CGG | 0.475010 | 3.4:-97669200 | None:intergenic |
| ATCAACAAAACGTCGCCGTT+AGG | 0.480941 | 3.4:-97669119 | None:intergenic |
| CCATCAAGGAGTTCCAAGTC+AGG | 0.481604 | 3.4:+97669724 | MS.gene064736:CDS |
| ACGACATCTACCGTTGGATA+AGG | 0.490170 | 3.4:-97668089 | None:intergenic |
| ACTAACATCTGGTGTTCCTC+CGG | 0.491911 | 3.4:+97668208 | MS.gene064736:CDS |
| AACGGAACTCTTATCCAAAC+CGG | 0.494388 | 3.4:+97668244 | MS.gene064736:CDS |
| TCCGTTGGGAGAGACGGAAC+CGG | 0.494468 | 3.4:-97668227 | None:intergenic |
| ATTCTTTCTCAATGAATCAA+AGG | 0.503052 | 3.4:+97669570 | MS.gene064736:CDS |
| ATACCCCGGAGGTGCAAGAA+TGG | 0.506107 | 3.4:-97669684 | None:intergenic |
| CCATCTTCTGGCTGAGAGGC+CGG | 0.506753 | 3.4:-97668341 | None:intergenic |
| GAAGTTCCGTTGGAAACAAA+CGG | 0.507226 | 3.4:-97669355 | None:intergenic |
| AATCCTATCTCTAAATATGA+AGG | 0.509007 | 3.4:-97669395 | None:intergenic |
| TTGGGAATCAGGTCGTAATC+CGG | 0.509273 | 3.4:+97669169 | MS.gene064736:CDS |
| AACCGACCAGAATCCGAGTT+GGG | 0.511154 | 3.4:+97669046 | MS.gene064736:CDS |
| GCTTCTAACCGAAGTTCCGT+TGG | 0.513496 | 3.4:-97669365 | None:intergenic |
| TACCCCGGAGGTGCAAGAAT+GGG | 0.517149 | 3.4:-97669683 | None:intergenic |
| GAAGGTTCGGTTTCAGGTGA+AGG | 0.518039 | 3.4:+97669490 | MS.gene064736:CDS |
| TTACTATTTGTGGTCCATCA+AGG | 0.519156 | 3.4:+97669710 | MS.gene064736:CDS |
| TGGACCCAAACACCCTGACT+TGG | 0.521685 | 3.4:-97669737 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.521735 | 3.4:+97668957 | MS.gene064736:CDS |
| TGGGTTATGGAAACTATGCC+AGG | 0.521749 | 3.4:+97669065 | MS.gene064736:CDS |
| ACAGTTTGGACATGGATTGA+AGG | 0.522901 | 3.4:-97668299 | None:intergenic |
| TTGGTATTGCCACTTCAACT+TGG | 0.523039 | 3.4:-97669655 | None:intergenic |
| TCTTCATCCAAACTAACATC+TGG | 0.523551 | 3.4:+97668197 | MS.gene064736:CDS |
| TGTCCACCAGCGGCTATAGC+CGG | 0.524473 | 3.4:-97667956 | None:intergenic |
| GTTTGTTTCCAACGGAACTT+CGG | 0.525030 | 3.4:+97669357 | MS.gene064736:CDS |
| AAGTTCCGTTGGAAACAAAC+GGG | 0.529792 | 3.4:-97669354 | None:intergenic |
| GTTGATTAATGGTGGAGCTG+TGG | 0.531889 | 3.4:+97669136 | MS.gene064736:CDS |
| TCCGGTTCCGTCTCTCCCAA+CGG | 0.533508 | 3.4:+97668226 | MS.gene064736:CDS |
| GATCTCCACCTGGTATTGTA+GGG | 0.534802 | 3.4:-97668851 | None:intergenic |
| TGCCAATCACAGTTTGGACA+TGG | 0.534978 | 3.4:-97668307 | None:intergenic |
| GGTTTGGATAAGAGTTCCGT+TGG | 0.535136 | 3.4:-97668242 | None:intergenic |
| GTAAAATTGTAATTTACATG+AGG | 0.535472 | 3.4:-97669332 | None:intergenic |
| ACGACGGAGACCGTACCGTT+AGG | 0.538246 | 3.4:+97668275 | MS.gene064736:CDS |
| AAGAGTTCCGTTGGGAGAGA+CGG | 0.539396 | 3.4:-97668233 | None:intergenic |
| GTTTCAGGTGAAGGCAACAT+TGG | 0.544359 | 3.4:+97669499 | MS.gene064736:CDS |
| TAAAATTGTAATTTACATGA+GGG | 0.545993 | 3.4:-97669331 | None:intergenic |
| CCGGCCTCTCAGCCAGAAGA+TGG | 0.548508 | 3.4:+97668341 | MS.gene064736:CDS |
| AAAACAGCAGAACCTGAACT+AGG | 0.549812 | 3.4:-97668885 | None:intergenic |
| GAAGCTGAGGTAATGATTTG+TGG | 0.554009 | 3.4:+97668942 | MS.gene064736:CDS |
| GGAAGACAAATTATCATTGG+AGG | 0.556162 | 3.4:+97668615 | MS.gene064736:CDS |
| TAGTTTGGATGAAGAGTGGT+CGG | 0.556525 | 3.4:-97668189 | None:intergenic |
| GCAGTTGAGTGATACATTCG+TGG | 0.557371 | 3.4:-97669266 | None:intergenic |
| CCAGCGGCTATAGCCGGAGA+TGG | 0.561644 | 3.4:-97667950 | None:intergenic |
| ATCGGAGCTTTGAATACATG+TGG | 0.566801 | 3.4:+97669011 | MS.gene064736:CDS |
| CTATAGCCGCTGGTGGACAA+TGG | 0.567409 | 3.4:+97667960 | MS.gene064736:CDS |
| TAGAAACGACGTCATATTCG+AGG | 0.576878 | 3.4:-97668159 | None:intergenic |
| AAAGCCTTTAGTTGAAGCTG+AGG | 0.581362 | 3.4:+97668929 | MS.gene064736:CDS |
| ATTTACATGAGGGTTGCTAC+CGG | 0.582071 | 3.4:-97669321 | None:intergenic |
| GTCTCCGTCGTTGAAACCAC+CGG | 0.584599 | 3.4:-97668263 | None:intergenic |
| ATCAACATACCAAGTTGAAG+TGG | 0.590631 | 3.4:+97669646 | MS.gene064736:CDS |
| GAGCTTTGAATACATGTGGT+CGG | 0.592341 | 3.4:+97669015 | MS.gene064736:CDS |
| AAAACATACCCTACAATACC+AGG | 0.592824 | 3.4:+97668843 | MS.gene064736:CDS |
| ACCAATCACATGCTACCAGA+TGG | 0.598604 | 3.4:+97668594 | MS.gene064736:CDS |
| GTTTGGATAAGAGTTCCGTT+GGG | 0.598861 | 3.4:-97668241 | None:intergenic |
| TCTCCGGCTATAGCCGCTGG+TGG | 0.600687 | 3.4:+97667953 | MS.gene064736:CDS |
| TTGAGAATCCAAAATCTGTA+CGG | 0.601146 | 3.4:-97668060 | None:intergenic |
| TAACCGACCAGAATCCGAGT+TGG | 0.603354 | 3.4:+97669045 | MS.gene064736:CDS |
| CTTACCATCTTCTGGCTGAG+AGG | 0.606260 | 3.4:-97668345 | None:intergenic |
| GTAGATATTATAATAATGAG+AGG | 0.610209 | 3.4:-97667914 | None:intergenic |
| AGAAACGACGTCATATTCGA+GGG | 0.612926 | 3.4:-97668158 | None:intergenic |
| GATTGAAGGTCCTAACGGTA+CGG | 0.622829 | 3.4:-97668285 | None:intergenic |
| ATGTTAGTTTGGATGAAGAG+TGG | 0.626268 | 3.4:-97668193 | None:intergenic |
| GTGTAGTAATTGCATATGCA+TGG | 0.626532 | 3.4:-97668014 | None:intergenic |
| AACCCAACTCGGATTCTGGT+CGG | 0.628839 | 3.4:-97669048 | None:intergenic |
| CAGCTCTTACAAAACAACAT+TGG | 0.629515 | 3.4:+97667983 | MS.gene064736:CDS |
| ATTAACACGACATCTACCGT+TGG | 0.632840 | 3.4:-97668095 | None:intergenic |
| AGCCGGAGATGGAAGCGTCA+CGG | 0.634477 | 3.4:-97667939 | None:intergenic |
| TCAAACTTATCCTTATCCAA+CGG | 0.635919 | 3.4:+97668079 | MS.gene064736:CDS |
| GAGGGTTGCTACCGGCAACA+AGG | 0.641296 | 3.4:-97669313 | None:intergenic |
| CACCCATTCTTGCACCTCCG+GGG | 0.644030 | 3.4:+97669681 | MS.gene064736:CDS |
| TATAATCAAACAAAATAGCA+CGG | 0.644345 | 3.4:-97668803 | None:intergenic |
| CATCAAGGAGTTCCAAGTCA+GGG | 0.650832 | 3.4:+97669725 | MS.gene064736:CDS |
| ATAGTTTCCATAACCCAACT+CGG | 0.651608 | 3.4:-97669059 | None:intergenic |
| TAGATATTATAATAATGAGA+GGG | 0.654289 | 3.4:-97667913 | None:intergenic |
| ACATGGATTGAAGGTCCTAA+CGG | 0.659237 | 3.4:-97668290 | None:intergenic |
| AGGCGGTGCATACATTGTCA+CGG | 0.661155 | 3.4:-97669537 | None:intergenic |
| GGAACTCTTATCCAAACCGG+TGG | 0.663220 | 3.4:+97668247 | MS.gene064736:CDS |
| TGATTAATGGTGGAGCTGTG+GGG | 0.663789 | 3.4:+97669138 | MS.gene064736:CDS |
| GTTGGGAGAGACGGAACCGG+AGG | 0.666779 | 3.4:-97668224 | None:intergenic |
| ACAAATAGTAAATAATACCC+CGG | 0.667706 | 3.4:-97669698 | None:intergenic |
| GAGGGATAAGAAGATGAATG+GGG | 0.671217 | 3.4:-97667895 | None:intergenic |
| TCACTCATAACTCTTCCACC+TGG | 0.673279 | 3.4:-97669083 | None:intergenic |
| GAGCTGCCATTGTCCACCAG+CGG | 0.673603 | 3.4:-97667966 | None:intergenic |
| ACGACCTGATTCCCAACCAG+CGG | 0.683895 | 3.4:-97669162 | None:intergenic |
| GTTTGATTATAACAGCAACA+AGG | 0.685381 | 3.4:+97668815 | MS.gene064736:CDS |
| GCTGAGGTAATGATTTGTGG+TGG | 0.695956 | 3.4:+97668945 | MS.gene064736:CDS |
| CAAACCGGTGGTTTCAACGA+CGG | 0.697076 | 3.4:+97668259 | MS.gene064736:CDS |
| GATTGGCAAGAATTCAACGC+CGG | 0.705232 | 3.4:+97668322 | MS.gene064736:CDS |
| TAACTTCTAGGATCTCCACC+TGG | 0.707322 | 3.4:-97668861 | None:intergenic |
| ACATACCCTACAATACCAGG+TGG | 0.726590 | 3.4:+97668846 | MS.gene064736:CDS |
| GTTATGGAAACTATGCCAGG+TGG | 0.735089 | 3.4:+97669068 | MS.gene064736:CDS |
| CGGAGATGGAAGCGTCACGG+TGG | 0.736799 | 3.4:-97667936 | None:intergenic |
| AATAGTAAATAATACCCCGG+AGG | 0.749616 | 3.4:-97669695 | None:intergenic |
| AAAGAATGTGTGTTAAAAGG+CGG | 0.786062 | 3.4:-97669554 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAATTTACATGA+GGG | - | chr3.4:97669334-97669353 | None:intergenic | 15.0% |
| !! | TAGATATTATAATAATGAGA+GGG | - | chr3.4:97667916-97667935 | None:intergenic | 15.0% |
| !! | TATTATTTACTATCAAACTA+AGG | - | chr3.4:97668523-97668542 | None:intergenic | 15.0% |
| !!! | ATCATTTCTTAGTATTTTTT+TGG | + | chr3.4:97668401-97668420 | MS.gene064736:intron | 15.0% |
| !! | ATAAACCAAATAGTTTAGTT+GGG | + | chr3.4:97669210-97669229 | MS.gene064736:CDS | 20.0% |
| !! | GTAAAATTGTAATTTACATG+AGG | - | chr3.4:97669335-97669354 | None:intergenic | 20.0% |
| !! | GTAGATATTATAATAATGAG+AGG | - | chr3.4:97667917-97667936 | None:intergenic | 20.0% |
| !! | TATAAACCAAATAGTTTAGT+TGG | + | chr3.4:97669209-97669228 | MS.gene064736:CDS | 20.0% |
| !! | TATAATCAAACAAAATAGCA+CGG | - | chr3.4:97668806-97668825 | None:intergenic | 20.0% |
| !! | TCTTATGAAAAAACATTACA+AGG | + | chr3.4:97668981-97669000 | MS.gene064736:CDS | 20.0% |
| !!! | CTATTTGGTTTATAAAGAAA+CGG | - | chr3.4:97669203-97669222 | None:intergenic | 20.0% |
| ! | AATCCTATCTCTAAATATGA+AGG | - | chr3.4:97669398-97669417 | None:intergenic | 25.0% |
| ! | ACAAATAGTAAATAATACCC+CGG | - | chr3.4:97669701-97669720 | None:intergenic | 25.0% |
| ! | AGTAGTAGTAAAAATGTTGT+TGG | + | chr3.4:97669614-97669633 | MS.gene064736:CDS | 25.0% |
| ! | ATTCTTTCTCAATGAATCAA+AGG | + | chr3.4:97669570-97669589 | MS.gene064736:CDS | 25.0% |
| ! | ATTTCAATTTCGTTTGTGAT+TGG | - | chr3.4:97669457-97669476 | None:intergenic | 25.0% |
| ! | GAAGTAACTATATCTCTAAT+AGG | + | chr3.4:97668565-97668584 | MS.gene064736:intron | 25.0% |
| ! | TAAGTGCATGTTTAGATTAA+CGG | + | chr3.4:97668364-97668383 | MS.gene064736:intron | 25.0% |
| ! | TCATTTGTTTGTACAAGAAA+TGG | - | chr3.4:97668708-97668727 | None:intergenic | 25.0% |
| ! | TCTACATTGAGAAAAACAAA+CGG | - | chr3.4:97668756-97668775 | None:intergenic | 25.0% |
| ! | TTTCAATTTCGTTTGTGATT+GGG | - | chr3.4:97669456-97669475 | None:intergenic | 25.0% |
| !!! | ACATTACAAGGTAGTTTTAT+CGG | + | chr3.4:97668993-97669012 | MS.gene064736:CDS | 25.0% |
| !!! | GTTTTTTCATAAGAACCTTT+TGG | - | chr3.4:97668975-97668994 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCTCAATGTAGA+TGG | + | chr3.4:97668756-97668775 | MS.gene064736:CDS | 25.0% |
| AAAGAATGTGTGTTAAAAGG+CGG | - | chr3.4:97669557-97669576 | None:intergenic | 30.0% | |
| AATAAGAAATATAAGTCCCG+TGG | - | chr3.4:97668481-97668500 | None:intergenic | 30.0% | |
| AGAAATGATTCTTTCAAAGC+TGG | - | chr3.4:97668390-97668409 | None:intergenic | 30.0% | |
| ATAAGAAATATAAGTCCCGT+GGG | - | chr3.4:97668480-97668499 | None:intergenic | 30.0% | |
| CTACATTGAGAAAAACAAAC+GGG | - | chr3.4:97668755-97668774 | None:intergenic | 30.0% | |
| GAAATACGCTCAAAAATTGA+AGG | + | chr3.4:97669472-97669491 | MS.gene064736:CDS | 30.0% | |
| GAGAAAGAATGTGTGTTAAA+AGG | - | chr3.4:97669560-97669579 | None:intergenic | 30.0% | |
| GATGGAAGACAAATTATCAT+TGG | + | chr3.4:97668612-97668631 | MS.gene064736:CDS | 30.0% | |
| GTTTGATTATAACAGCAACA+AGG | + | chr3.4:97668815-97668834 | MS.gene064736:CDS | 30.0% | |
| TCAAACTTATCCTTATCCAA+CGG | + | chr3.4:97668079-97668098 | MS.gene064736:CDS | 30.0% | |
| TCACCTTCATATTTAGAGAT+AGG | + | chr3.4:97669392-97669411 | MS.gene064736:CDS | 30.0% | |
| TTCAATTTCGTTTGTGATTG+GGG | - | chr3.4:97669455-97669474 | None:intergenic | 30.0% | |
| TTGAGAATCCAAAATCTGTA+CGG | - | chr3.4:97668063-97668082 | None:intergenic | 30.0% | |
| ! | ATGATAATTTGTCTTCCATC+TGG | - | chr3.4:97668612-97668631 | None:intergenic | 30.0% |
| ! | ATTTTTGACCGTACAGATTT+TGG | + | chr3.4:97668052-97668071 | MS.gene064736:CDS | 30.0% |
| ! | GACATGATTTTACTTCCTAA+CGG | + | chr3.4:97669104-97669123 | MS.gene064736:CDS | 30.0% |
| ! | GGGGTATTATTTACTATTTG+TGG | + | chr3.4:97669700-97669719 | MS.gene064736:CDS | 30.0% |
| ! | TAAAGAAACGGATTCAAAAC+CGG | - | chr3.4:97669191-97669210 | None:intergenic | 30.0% |
| !! | TTTTTCACAACTTGTTCTTG+TGG | - | chr3.4:97668121-97668140 | None:intergenic | 30.0% |
| AAAACATACCCTACAATACC+AGG | + | chr3.4:97668843-97668862 | MS.gene064736:CDS | 35.0% | |
| AATAGTAAATAATACCCCGG+AGG | - | chr3.4:97669698-97669717 | None:intergenic | 35.0% | |
| AATTCTTGCCAATCACAGTT+TGG | - | chr3.4:97668316-97668335 | None:intergenic | 35.0% | |
| ACGCTCAAAAATTGAAGGTT+CGG | + | chr3.4:97669477-97669496 | MS.gene064736:CDS | 35.0% | |
| AGAGGGATAAGAAGATGAAT+GGG | - | chr3.4:97667899-97667918 | None:intergenic | 35.0% | |
| ATAGTTTCCATAACCCAACT+CGG | - | chr3.4:97669062-97669081 | None:intergenic | 35.0% | |
| ATTACCTCAGCTTCAACTAA+AGG | - | chr3.4:97668936-97668955 | None:intergenic | 35.0% | |
| CAGCTCTTACAAAACAACAT+TGG | + | chr3.4:97667983-97668002 | MS.gene064736:CDS | 35.0% | |
| CTCAATGAATCAAAGGTTGT+TGG | + | chr3.4:97669577-97669596 | MS.gene064736:CDS | 35.0% | |
| CTTGACCCAACTAAACTATT+TGG | - | chr3.4:97669218-97669237 | None:intergenic | 35.0% | |
| GGAAGACAAATTATCATTGG+AGG | + | chr3.4:97668615-97668634 | MS.gene064736:CDS | 35.0% | |
| GTGTAGTAATTGCATATGCA+TGG | - | chr3.4:97668017-97668036 | None:intergenic | 35.0% | |
| TACGGTCAAAAATGATGACA+CGG | - | chr3.4:97668045-97668064 | None:intergenic | 35.0% | |
| TCTTCATCCAAACTAACATC+TGG | + | chr3.4:97668197-97668216 | MS.gene064736:CDS | 35.0% | |
| TTACTATTTGTGGTCCATCA+AGG | + | chr3.4:97669710-97669729 | MS.gene064736:CDS | 35.0% | |
| ! | AAAATTGAAGGTTCGGTTTC+AGG | + | chr3.4:97669484-97669503 | MS.gene064736:CDS | 35.0% |
| ! | ATCAACATACCAAGTTGAAG+TGG | + | chr3.4:97669646-97669665 | MS.gene064736:CDS | 35.0% |
| ! | ATGTTAGTTTGGATGAAGAG+TGG | - | chr3.4:97668196-97668215 | None:intergenic | 35.0% |
| ! | GGCTTTTGTAAGTTTCTTAG+AGG | - | chr3.4:97668915-97668934 | None:intergenic | 35.0% |
| ! | TTTGCTGTAGCATCTTTCTT+TGG | - | chr3.4:97668669-97668688 | None:intergenic | 35.0% |
| ! | TTTTACCCGTTTGTTTCCAA+CGG | + | chr3.4:97669349-97669368 | MS.gene064736:CDS | 35.0% |
| !! | GACGTTTTGTTGATTAATGG+TGG | + | chr3.4:97669128-97669147 | MS.gene064736:CDS | 35.0% |
| AAAACAGCAGAACCTGAACT+AGG | - | chr3.4:97668888-97668907 | None:intergenic | 40.0% | |
| AAAGCCTTTAGTTGAAGCTG+AGG | + | chr3.4:97668929-97668948 | MS.gene064736:CDS | 40.0% | |
| AACATGCACTTACCATCTTC+TGG | - | chr3.4:97668356-97668375 | None:intergenic | 40.0% | |
| AACGGAACTCTTATCCAAAC+CGG | + | chr3.4:97668244-97668263 | MS.gene064736:CDS | 40.0% | |
| AAGTTCCGTTGGAAACAAAC+GGG | - | chr3.4:97669357-97669376 | None:intergenic | 40.0% | |
| AGAAACGACGTCATATTCGA+GGG | - | chr3.4:97668161-97668180 | None:intergenic | 40.0% | |
| AGGAACACCAGATGTTAGTT+TGG | - | chr3.4:97668207-97668226 | None:intergenic | 40.0% | |
| ATCCATGTCCAAACTGTGAT+TGG | + | chr3.4:97668305-97668324 | MS.gene064736:CDS | 40.0% | |
| ATTAACACGACATCTACCGT+TGG | - | chr3.4:97668098-97668117 | None:intergenic | 40.0% | |
| ATTGTTCTTAGCTAAGCCCA+CGG | + | chr3.4:97668461-97668480 | MS.gene064736:intron | 40.0% | |
| ATTTACATGAGGGTTGCTAC+CGG | - | chr3.4:97669324-97669343 | None:intergenic | 40.0% | |
| CAATGATGTGCGTCCTATAA+TGG | + | chr3.4:97669418-97669437 | MS.gene064736:CDS | 40.0% | |
| CCTAGAAGTTATCCTAGTTC+AGG | + | chr3.4:97668873-97668892 | MS.gene064736:CDS | 40.0% | |
| CCTGAACTAGGATAACTTCT+AGG | - | chr3.4:97668876-97668895 | None:intergenic | 40.0% | |
| GAAGCTGAGGTAATGATTTG+TGG | + | chr3.4:97668942-97668961 | MS.gene064736:CDS | 40.0% | |
| GAAGTTCCGTTGGAAACAAA+CGG | - | chr3.4:97669358-97669377 | None:intergenic | 40.0% | |
| GAGAGGGATAAGAAGATGAA+TGG | - | chr3.4:97667900-97667919 | None:intergenic | 40.0% | |
| GAGGGATAAGAAGATGAATG+GGG | - | chr3.4:97667898-97667917 | None:intergenic | 40.0% | |
| GGCAACATTGGTGAAAAACA+TGG | + | chr3.4:97669511-97669530 | MS.gene064736:CDS | 40.0% | |
| GTTTGGATAAGAGTTCCGTT+GGG | - | chr3.4:97668244-97668263 | None:intergenic | 40.0% | |
| GTTTGTTTCCAACGGAACTT+CGG | + | chr3.4:97669357-97669376 | MS.gene064736:CDS | 40.0% | |
| TAGAAACGACGTCATATTCG+AGG | - | chr3.4:97668162-97668181 | None:intergenic | 40.0% | |
| TAGTTTGGATGAAGAGTGGT+CGG | - | chr3.4:97668192-97668211 | None:intergenic | 40.0% | |
| ! | ACAGTTTGGACATGGATTGA+AGG | - | chr3.4:97668302-97668321 | None:intergenic | 40.0% |
| ! | ACATGGATTGAAGGTCCTAA+CGG | - | chr3.4:97668293-97668312 | None:intergenic | 40.0% |
| ! | TGTTTTGCTAAGAGACGGTA+GGG | + | chr3.4:97669289-97669308 | MS.gene064736:CDS | 40.0% |
| ! | TTGATTAATGGTGGAGCTGT+GGG | + | chr3.4:97669137-97669156 | MS.gene064736:CDS | 40.0% |
| ! | TTGGTATTGCCACTTCAACT+TGG | - | chr3.4:97669658-97669677 | None:intergenic | 40.0% |
| !! | ATCGGAGCTTTGAATACATG+TGG | + | chr3.4:97669011-97669030 | MS.gene064736:CDS | 40.0% |
| !! | GAGCTTTGAATACATGTGGT+CGG | + | chr3.4:97669015-97669034 | MS.gene064736:CDS | 40.0% |
| !! | GGCGACGTTTTGTTGATTAA+TGG | + | chr3.4:97669125-97669144 | MS.gene064736:CDS | 40.0% |
| !!! | ACTGCTGTTTTGCTAAGAGA+CGG | + | chr3.4:97669284-97669303 | MS.gene064736:CDS | 40.0% |
| ACATACCCTACAATACCAGG+TGG | + | chr3.4:97668846-97668865 | MS.gene064736:CDS | 45.0% | |
| ACCAATCACATGCTACCAGA+TGG | + | chr3.4:97668594-97668613 | MS.gene064736:CDS | 45.0% | |
| ACGACATCTACCGTTGGATA+AGG | - | chr3.4:97668092-97668111 | None:intergenic | 45.0% | |
| ACTAACATCTGGTGTTCCTC+CGG | + | chr3.4:97668208-97668227 | MS.gene064736:CDS | 45.0% | |
| ATCAACAAAACGTCGCCGTT+AGG | - | chr3.4:97669122-97669141 | None:intergenic | 45.0% | |
| CATCAAGGAGTTCCAAGTCA+GGG | + | chr3.4:97669725-97669744 | MS.gene064736:CDS | 45.0% | |
| GATCTCCACCTGGTATTGTA+GGG | - | chr3.4:97668854-97668873 | None:intergenic | 45.0% | |
| GATTGAAGGTCCTAACGGTA+CGG | - | chr3.4:97668288-97668307 | None:intergenic | 45.0% | |
| GATTGGCAAGAATTCAACGC+CGG | + | chr3.4:97668322-97668341 | MS.gene064736:CDS | 45.0% | |
| GCAGTTGAGTGATACATTCG+TGG | - | chr3.4:97669269-97669288 | None:intergenic | 45.0% | |
| GGTGCAAGAATGGGTGAATT+TGG | - | chr3.4:97669677-97669696 | None:intergenic | 45.0% | |
| GGTGCAGGAAACACCATTAT+AGG | - | chr3.4:97669434-97669453 | None:intergenic | 45.0% | |
| GGTTTGGATAAGAGTTCCGT+TGG | - | chr3.4:97668245-97668264 | None:intergenic | 45.0% | |
| GTTATGGAAACTATGCCAGG+TGG | + | chr3.4:97669068-97669087 | MS.gene064736:CDS | 45.0% | |
| TCACTCATAACTCTTCCACC+TGG | - | chr3.4:97669086-97669105 | None:intergenic | 45.0% | |
| TCCATCTGGTAGCATGTGAT+TGG | - | chr3.4:97668598-97668617 | None:intergenic | 45.0% | |
| TGCCAATCACAGTTTGGACA+TGG | - | chr3.4:97668310-97668329 | None:intergenic | 45.0% | |
| TGGGTTATGGAAACTATGCC+AGG | + | chr3.4:97669065-97669084 | MS.gene064736:CDS | 45.0% | |
| TTGGGAATCAGGTCGTAATC+CGG | + | chr3.4:97669169-97669188 | MS.gene064736:CDS | 45.0% | |
| TTGTTCTTAGCTAAGCCCAC+GGG | + | chr3.4:97668462-97668481 | MS.gene064736:intron | 45.0% | |
| ! | AGTTCCAAGTCAGGGTGTTT+GGG | + | chr3.4:97669733-97669752 | MS.gene064736:CDS | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | + | chr3.4:97668957-97668976 | MS.gene064736:CDS | 45.0% |
| ! | CTGTTTTGCTAAGAGACGGT+AGG | + | chr3.4:97669288-97669307 | MS.gene064736:CDS | 45.0% |
| ! | GCTGAGGTAATGATTTGTGG+TGG | + | chr3.4:97668945-97668964 | MS.gene064736:CDS | 45.0% |
| ! | GTTGATTAATGGTGGAGCTG+TGG | + | chr3.4:97669136-97669155 | MS.gene064736:CDS | 45.0% |
| ! | GTTTCAGGTGAAGGCAACAT+TGG | + | chr3.4:97669499-97669518 | MS.gene064736:CDS | 45.0% |
| ! | TGATTAATGGTGGAGCTGTG+GGG | + | chr3.4:97669138-97669157 | MS.gene064736:CDS | 45.0% |
| !! | TAACTTCTAGGATCTCCACC+TGG | - | chr3.4:97668864-97668883 | None:intergenic | 45.0% |
| AACCCAACTCGGATTCTGGT+CGG | - | chr3.4:97669051-97669070 | None:intergenic | 50.0% | |
| AACCGACCAGAATCCGAGTT+GGG | + | chr3.4:97669046-97669065 | MS.gene064736:CDS | 50.0% | |
| AAGAGTTCCGTTGGGAGAGA+CGG | - | chr3.4:97668236-97668255 | None:intergenic | 50.0% | |
| AGGCGGTGCATACATTGTCA+CGG | - | chr3.4:97669540-97669559 | None:intergenic | 50.0% | |
| CAAACCGGTGGTTTCAACGA+CGG | + | chr3.4:97668259-97668278 | MS.gene064736:CDS | 50.0% | |
| CCATAACCCAACTCGGATTC+TGG | - | chr3.4:97669055-97669074 | None:intergenic | 50.0% | |
| CCATCAAGGAGTTCCAAGTC+AGG | + | chr3.4:97669724-97669743 | MS.gene064736:CDS | 50.0% | |
| GCTTCTAACCGAAGTTCCGT+TGG | - | chr3.4:97669368-97669387 | None:intergenic | 50.0% | |
| GGAACTCTTATCCAAACCGG+TGG | + | chr3.4:97668247-97668266 | MS.gene064736:CDS | 50.0% | |
| GGATCTCCACCTGGTATTGT+AGG | - | chr3.4:97668855-97668874 | None:intergenic | 50.0% | |
| TAACCGACCAGAATCCGAGT+TGG | + | chr3.4:97669045-97669064 | MS.gene064736:CDS | 50.0% | |
| TTCACCCATTCTTGCACCTC+CGG | + | chr3.4:97669679-97669698 | MS.gene064736:CDS | 50.0% | |
| TTCGTTTGTGATTGGGGTGC+AGG | - | chr3.4:97669449-97669468 | None:intergenic | 50.0% | |
| ! | CCAGAATCCGAGTTGGGTTA+TGG | + | chr3.4:97669052-97669071 | MS.gene064736:CDS | 50.0% |
| ! | CTTACCATCTTCTGGCTGAG+AGG | - | chr3.4:97668348-97668367 | None:intergenic | 50.0% |
| ! | GAAGGTTCGGTTTCAGGTGA+AGG | + | chr3.4:97669490-97669509 | MS.gene064736:CDS | 50.0% |
| ! | GAGTTCCAAGTCAGGGTGTT+TGG | + | chr3.4:97669732-97669751 | MS.gene064736:CDS | 50.0% |
| !! | CCTGACTTGGAACTCCTTGA+TGG | - | chr3.4:97669727-97669746 | None:intergenic | 50.0% |
| ACGACCTGATTCCCAACCAG+CGG | - | chr3.4:97669165-97669184 | None:intergenic | 55.0% | |
| GTCTCCGTCGTTGAAACCAC+CGG | - | chr3.4:97668266-97668285 | None:intergenic | 55.0% | |
| TCACCCATTCTTGCACCTCC+GGG | + | chr3.4:97669680-97669699 | MS.gene064736:CDS | 55.0% | |
| TGGACCCAAACACCCTGACT+TGG | - | chr3.4:97669740-97669759 | None:intergenic | 55.0% | |
| ! | ATACCCCGGAGGTGCAAGAA+TGG | - | chr3.4:97669687-97669706 | None:intergenic | 55.0% |
| ! | CGTCGTTGAAACCACCGGTT+TGG | - | chr3.4:97668261-97668280 | None:intergenic | 55.0% |
| ! | CTATAGCCGCTGGTGGACAA+TGG | + | chr3.4:97667960-97667979 | MS.gene064736:CDS | 55.0% |
| ! | TACCCCGGAGGTGCAAGAAT+GGG | - | chr3.4:97669686-97669705 | None:intergenic | 55.0% |
| ACGACGGAGACCGTACCGTT+AGG | + | chr3.4:97668275-97668294 | MS.gene064736:CDS | 60.0% | |
| CACCCATTCTTGCACCTCCG+GGG | + | chr3.4:97669681-97669700 | MS.gene064736:CDS | 60.0% | |
| CACCGTGACGCTTCCATCTC+CGG | + | chr3.4:97667937-97667956 | MS.gene064736:CDS | 60.0% | |
| GACGGTAGGGTCCTTGTTGC+CGG | + | chr3.4:97669302-97669321 | MS.gene064736:CDS | 60.0% | |
| GAGCTGCCATTGTCCACCAG+CGG | - | chr3.4:97667969-97667988 | None:intergenic | 60.0% | |
| GAGGGTTGCTACCGGCAACA+AGG | - | chr3.4:97669316-97669335 | None:intergenic | 60.0% | |
| TCCGGTTCCGTCTCTCCCAA+CGG | + | chr3.4:97668226-97668245 | MS.gene064736:CDS | 60.0% | |
| TCCGTTGGGAGAGACGGAAC+CGG | - | chr3.4:97668230-97668249 | None:intergenic | 60.0% | |
| TGTCCACCAGCGGCTATAGC+CGG | - | chr3.4:97667959-97667978 | None:intergenic | 60.0% | |
| ! | CCATCTTCTGGCTGAGAGGC+CGG | - | chr3.4:97668344-97668363 | None:intergenic | 60.0% |
| !! | AGCCGGAGATGGAAGCGTCA+CGG | - | chr3.4:97667942-97667961 | None:intergenic | 60.0% |
| CCAGCGGCTATAGCCGGAGA+TGG | - | chr3.4:97667953-97667972 | None:intergenic | 65.0% | |
| CCATCTCCGGCTATAGCCGC+TGG | + | chr3.4:97667950-97667969 | MS.gene064736:CDS | 65.0% | |
| CCGGCCTCTCAGCCAGAAGA+TGG | + | chr3.4:97668341-97668360 | MS.gene064736:CDS | 65.0% | |
| GTTGGGAGAGACGGAACCGG+AGG | - | chr3.4:97668227-97668246 | None:intergenic | 65.0% | |
| TCTCCGGCTATAGCCGCTGG+TGG | + | chr3.4:97667953-97667972 | MS.gene064736:CDS | 65.0% | |
| ! | AGCTGTGGGGTCCGCTGGTT+GGG | + | chr3.4:97669151-97669170 | MS.gene064736:CDS | 65.0% |
| ! | GGGTCCGCTGGTTGGGAATC+AGG | + | chr3.4:97669158-97669177 | MS.gene064736:CDS | 65.0% |
| !! | CGGAGATGGAAGCGTCACGG+TGG | - | chr3.4:97667939-97667958 | None:intergenic | 65.0% |
| GAGCTGTGGGGTCCGCTGGT+TGG | + | chr3.4:97669150-97669169 | MS.gene064736:CDS | 70.0% | |
| GGTGGAGCTGTGGGGTCCGC+TGG | + | chr3.4:97669146-97669165 | MS.gene064736:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97667878 | 97669769 | 97667878 | ID=MS.gene064736 |
| chr3.4 | mRNA | 97667878 | 97669769 | 97667878 | ID=MS.gene064736.t1;Parent=MS.gene064736 |
| chr3.4 | exon | 97667878 | 97668362 | 97667878 | ID=MS.gene064736.t1.exon1;Parent=MS.gene064736.t1 |
| chr3.4 | CDS | 97667878 | 97668362 | 97667878 | ID=cds.MS.gene064736.t1;Parent=MS.gene064736.t1 |
| chr3.4 | exon | 97668587 | 97669769 | 97668587 | ID=MS.gene064736.t1.exon2;Parent=MS.gene064736.t1 |
| chr3.4 | CDS | 97668587 | 97669769 | 97668587 | ID=cds.MS.gene064736.t1;Parent=MS.gene064736.t1 |
| Gene Sequence |
| Protein sequence |
