Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024645.t1 | KEH27428.1 | 100 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 8.10E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024645.t1 | Q9SW09 | 59.4 | 192 | 43 | 3 | 1 | 177 | 1 | 172 | 6.1e-46 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024645.t1 | A0A072UEC5 | 100.0 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 5.9e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024645 | MS.gene019556 | PPI |
| MS.gene024645 | MS.gene040115 | PPI |
| MS.gene024645 | MS.gene001756 | PPI |
| MS.gene024645 | MS.gene93753 | PPI |
| MS.gene024645 | MS.gene94561 | PPI |
| MS.gene047001 | MS.gene024645 | PPI |
| MS.gene024645 | MS.gene056722 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024645.t1 | MTR_5g010025 | 100.000 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 2.96e-130 | 363 |
| MS.gene024645.t1 | MTR_8g098850 | 93.889 | 180 | 8 | 1 | 1 | 180 | 1 | 177 | 2.73e-120 | 337 |
| MS.gene024645.t1 | MTR_8g098850 | 93.333 | 135 | 6 | 1 | 46 | 180 | 1 | 132 | 2.06e-83 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024645.t1 | AT4G25740 | 81.935 | 155 | 23 | 1 | 1 | 155 | 1 | 150 | 6.97e-80 | 235 |
| MS.gene024645.t1 | AT5G52650 | 80.000 | 155 | 30 | 1 | 1 | 155 | 1 | 154 | 1.75e-73 | 219 |
| MS.gene024645.t1 | AT5G41520 | 75.974 | 154 | 32 | 5 | 1 | 153 | 1 | 150 | 2.16e-70 | 211 |
| MS.gene024645.t1 | AT4G25740 | 63.277 | 177 | 32 | 1 | 1 | 177 | 1 | 144 | 5.82e-60 | 184 |
| MS.gene024645.t1 | AT5G41520 | 75.926 | 108 | 22 | 4 | 46 | 153 | 1 | 104 | 5.74e-43 | 140 |
Find 67 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGACCTGCTGGTGAATT+TGG | 0.215916 | 5.1:+3562678 | MS.gene024645:CDS |
| AGATTTGGCACATCGATTTC+TGG | 0.226768 | 5.1:-3562289 | None:intergenic |
| AGCTTAATCACTTGCAGATT+TGG | 0.235590 | 5.1:-3562304 | None:intergenic |
| TGCAAAGAAGGATTTCAATT+TGG | 0.241273 | 5.1:+3562258 | MS.gene024645:CDS |
| TTGCTTGGATGAACTATTAC+TGG | 0.272334 | 5.1:+3562368 | MS.gene024645:CDS |
| GCTGACTACAGGCCTTCTTT+TGG | 0.293788 | 5.1:+3562723 | MS.gene024645:CDS |
| CCTGGCTTCGGTCGTGGTTC+TGG | 0.294525 | 5.1:+3564170 | MS.gene024645:CDS |
| TTTGATGGAGAAAGGAGATT+TGG | 0.304890 | 5.1:+3562624 | MS.gene024645:CDS |
| GGTCGTGGTTCTGGTGGCTT+TGG | 0.306704 | 5.1:+3564179 | MS.gene024645:CDS |
| CTCCTTTCTCCATCAAATCT+TGG | 0.337377 | 5.1:-3562618 | None:intergenic |
| AAGCCAGCTGGAAGGCCCTT+TGG | 0.353720 | 5.1:+3562478 | MS.gene024645:CDS |
| TGATGCAGAGCTTCAAATCT+AGG | 0.370024 | 5.1:+3562326 | MS.gene024645:CDS |
| TACTGGTTCCTTACCAATGA+TGG | 0.373159 | 5.1:+3562385 | MS.gene024645:CDS |
| AGGCCCTTTGGTGGTCCTCC+TGG | 0.384336 | 5.1:+3562490 | MS.gene024645:CDS |
| GATTTGGCACATCGATTTCT+GGG | 0.410537 | 5.1:-3562288 | None:intergenic |
| CAGGGTCCTGGTGGTAGACC+TGG | 0.422429 | 5.1:+3564152 | MS.gene024645:intron |
| TAAGCATCGTTTGAACTAGT+TGG | 0.424537 | 5.1:-3564206 | None:intergenic |
| GAGAAACTCAATTCCATCAT+TGG | 0.425707 | 5.1:-3562398 | None:intergenic |
| CCACCAAAGGGCCTTCCAGC+TGG | 0.433378 | 5.1:-3562481 | None:intergenic |
| ATGATGGAATTGAGTTTCTC+AGG | 0.441503 | 5.1:+3562401 | MS.gene024645:CDS |
| AATTCACCAGCAGGTCCTCT+TGG | 0.445100 | 5.1:-3562675 | None:intergenic |
| TCCTGCTACTTTGAAGAAGC+AGG | 0.450643 | 5.1:+3562453 | MS.gene024645:CDS |
| CTGACTCTATTGCAGGGTCC+TGG | 0.452836 | 5.1:+3564140 | MS.gene024645:intron |
| GCCTGCTTCTTCAAAGTAGC+AGG | 0.453311 | 5.1:-3562454 | None:intergenic |
| ATTCACCAGCAGGTCCTCTT+GGG | 0.458492 | 5.1:-3562674 | None:intergenic |
| AGGGGCCCACCAAGATTTGA+TGG | 0.462295 | 5.1:+3562609 | MS.gene024645:intron |
| GGGAGTTTGCTATGCAAAGA+AGG | 0.473090 | 5.1:+3562246 | MS.gene024645:CDS |
| CTTTCTCCATCAAATCTTGG+TGG | 0.474542 | 5.1:-3562615 | None:intergenic |
| AAGAAGCAGGCTAAGCCAGC+TGG | 0.479610 | 5.1:+3562466 | MS.gene024645:CDS |
| GGTAGACCTGGCTTCGGTCG+TGG | 0.484946 | 5.1:+3564164 | MS.gene024645:CDS |
| GATGGAGAAAGGAGATTTGG+TGG | 0.486392 | 5.1:+3562627 | MS.gene024645:CDS |
| GGCTTCGGTCGTGGTTCTGG+TGG | 0.490892 | 5.1:+3564173 | MS.gene024645:CDS |
| CAGGTCCTCTTGGGCCTCCA+CGG | 0.492606 | 5.1:-3562665 | None:intergenic |
| CACCAAGATTTGATGGAGAA+AGG | 0.498036 | 5.1:+3562616 | MS.gene024645:CDS |
| TTTCTCCATCAAATCTTGGT+GGG | 0.498924 | 5.1:-3562614 | None:intergenic |
| ATCACCAGGAGGACCACCAA+AGG | 0.501155 | 5.1:-3562494 | None:intergenic |
| CCAGCTGGAAGGCCCTTTGG+TGG | 0.502902 | 5.1:+3562481 | MS.gene024645:CDS |
| GTGGAGCTCCAGCTGACTAC+AGG | 0.506847 | 5.1:+3562712 | MS.gene024645:CDS |
| AAGATTATTACCCCAAAAGA+AGG | 0.511567 | 5.1:-3562735 | None:intergenic |
| TCTCCTCCAAATTCACCAGC+AGG | 0.516678 | 5.1:-3562684 | None:intergenic |
| AAAGAAGGCCTGTAGTCAGC+TGG | 0.516901 | 5.1:-3562720 | None:intergenic |
| CCTGGTGGTAGACCTGGCTT+CGG | 0.526626 | 5.1:+3564158 | MS.gene024645:CDS |
| GTCCTCCTGGTGATCGCCCT+AGG | 0.527814 | 5.1:+3562503 | MS.gene024645:CDS |
| GGACCTGCTGGTGAATTTGG+AGG | 0.530997 | 5.1:+3562681 | MS.gene024645:CDS |
| CCAGAACCACGACCGAAGCC+AGG | 0.533716 | 5.1:-3564170 | None:intergenic |
| ACTCAATTCCATCATTGGTA+AGG | 0.545851 | 5.1:-3562393 | None:intergenic |
| GGAGGCCCAAGAGGACCTGC+TGG | 0.551228 | 5.1:+3562669 | MS.gene024645:CDS |
| GGTATTTGCAGATCTCTCTA+CGG | 0.553257 | 5.1:-3562125 | None:intergenic |
| CACAAGACATACCTTGGAAG+AGG | 0.559210 | 5.1:-3562146 | None:intergenic |
| GTAGCAGGAACAATCTCAGA+TGG | 0.565512 | 5.1:-3562439 | None:intergenic |
| TCACCAGGAGGACCACCAAA+GGG | 0.567521 | 5.1:-3562493 | None:intergenic |
| AGCAGGCTAAGCCAGCTGGA+AGG | 0.574627 | 5.1:+3562470 | MS.gene024645:CDS |
| AATTACCTAGGGCGATCACC+AGG | 0.586300 | 5.1:-3562508 | None:intergenic |
| GGCCTCCACGGTATCCATCA+CGG | 0.588978 | 5.1:-3562653 | None:intergenic |
| ATCTGCAAATACCTCTTCCA+AGG | 0.590451 | 5.1:+3562135 | MS.gene024645:CDS |
| CCGAAGCCAGGTCTACCACC+AGG | 0.597635 | 5.1:-3564158 | None:intergenic |
| GATGCAGAGCTTCAAATCTA+GGG | 0.604467 | 5.1:+3562327 | MS.gene024645:CDS |
| TCAAATCTAGGGAATATGTG+AGG | 0.607518 | 5.1:+3562338 | MS.gene024645:CDS |
| CAAATCTAGGGAATATGTGA+GGG | 0.609242 | 5.1:+3562339 | MS.gene024645:CDS |
| ACTCTATTGCAGGGTCCTGG+TGG | 0.611110 | 5.1:+3564143 | MS.gene024645:intron |
| GGATACCGTGGAGGCCCAAG+AGG | 0.629598 | 5.1:+3562660 | MS.gene024645:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637340 | 5.1:+3562639 | MS.gene024645:CDS |
| GGTGAATTTGGAGGAGACAA+AGG | 0.655884 | 5.1:+3562690 | MS.gene024645:CDS |
| GAATTTGGAGGAGACAAAGG+TGG | 0.658883 | 5.1:+3562693 | MS.gene024645:CDS |
| GACCGTGATGGATACCGTGG+AGG | 0.697879 | 5.1:+3562651 | MS.gene024645:CDS |
| GGTGACCGTGATGGATACCG+TGG | 0.715974 | 5.1:+3562648 | MS.gene024645:CDS |
| TACCTAGGGCGATCACCAGG+AGG | 0.726307 | 5.1:-3562505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAATGAATAAAAT+TGG | - | chr5.1:3562077-3562096 | None:intergenic | 10.0% |
| !! | AAATAAATATAAAAATTGAG+TGG | + | chr5.1:3563717-3563736 | MS.gene024645:intron | 10.0% |
| !! | AATAAATATAAAAATTGAGT+GGG | + | chr5.1:3563718-3563737 | MS.gene024645:intron | 10.0% |
| !!! | TTTTTTTATGTTTTGTTATT+TGG | + | chr5.1:3562557-3562576 | MS.gene024645:intron | 10.0% |
| !! | AATTCCAAATTAATTACCTA+GGG | - | chr5.1:3562522-3562541 | None:intergenic | 20.0% |
| !! | TCAAATCAAAGATAATATTG+AGG | - | chr5.1:3562904-3562923 | None:intergenic | 20.0% |
| !!! | GATTTAGCTTTTGAAATATA+AGG | + | chr5.1:3563816-3563835 | MS.gene024645:intron | 20.0% |
| !!! | TTTAACTAGTTTAATAGAGT+TGG | + | chr5.1:3563186-3563205 | MS.gene024645:intron | 20.0% |
| !!! | TTTATGTTTTGTTATTTGGT+CGG | + | chr5.1:3562561-3562580 | MS.gene024645:intron | 20.0% |
| ! | ATTTGTACAGAAAAAGAAAC+AGG | + | chr5.1:3563404-3563423 | MS.gene024645:intron | 25.0% |
| ! | CAATTCCAAATTAATTACCT+AGG | - | chr5.1:3562523-3562542 | None:intergenic | 25.0% |
| ! | CCAATAGAATTATATACATG+AGG | - | chr5.1:3564092-3564111 | None:intergenic | 25.0% |
| ! | CCTCATGTATATAATTCTAT+TGG | + | chr5.1:3564089-3564108 | MS.gene024645:intron | 25.0% |
| ! | TTATTGTGTTGTGTTTGAAT+TGG | + | chr5.1:3562200-3562219 | MS.gene024645:intron | 25.0% |
| !! | TGGGTATTTATATTTTCTGA+GGG | - | chr5.1:3563575-3563594 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTATTTTTCAG+AGG | + | chr5.1:3562225-3562244 | MS.gene024645:intron | 25.0% |
| !!! | AACTGTTGTTATTTTTCAGA+GGG | + | chr5.1:3562226-3562245 | MS.gene024645:intron | 25.0% |
| !!! | ATGTTGTGTTTGTTATGATT+TGG | + | chr5.1:3562791-3562810 | MS.gene024645:intron | 25.0% |
| !!! | TTTTGGGGTAATAATCTTAT+TGG | + | chr5.1:3562740-3562759 | MS.gene024645:intron | 25.0% |
| !!! | TTTTGTTATGGTGTTTTATG+CGG | + | chr5.1:3562853-3562872 | MS.gene024645:intron | 25.0% |
| AAGATTATTACCCCAAAAGA+AGG | - | chr5.1:3562738-3562757 | None:intergenic | 30.0% | |
| ATAGTGTATACCAACTTGTA+GGG | - | chr5.1:3563962-3563981 | None:intergenic | 30.0% | |
| ATGTCTTGTGCAATAATCTA+GGG | + | chr5.1:3562159-3562178 | MS.gene024645:intron | 30.0% | |
| ATTATATACATGAGGAAAGC+AGG | - | chr5.1:3564084-3564103 | None:intergenic | 30.0% | |
| CACATAAAAATGAGTATGCT+TGG | + | chr5.1:3563381-3563400 | MS.gene024645:intron | 30.0% | |
| CACTTTACAGTAAGAAAGAA+TGG | + | chr5.1:3563462-3563481 | MS.gene024645:intron | 30.0% | |
| CAGAAGAATAAAACTTGATC+AGG | - | chr5.1:3564123-3564142 | None:intergenic | 30.0% | |
| GAGATAAGAGTAAGAAAGAA+TGG | + | chr5.1:3563484-3563503 | MS.gene024645:intron | 30.0% | |
| TAAAATTGGAATCGCGTAAA+TGG | - | chr5.1:3562063-3562082 | None:intergenic | 30.0% | |
| TATATGCAAAACAAGTGTAG+TGG | + | chr5.1:3563131-3563150 | MS.gene024645:intron | 30.0% | |
| TATGTCTTGTGCAATAATCT+AGG | + | chr5.1:3562158-3562177 | MS.gene024645:intron | 30.0% | |
| TGCAAAGAAGGATTTCAATT+TGG | + | chr5.1:3562258-3562277 | MS.gene024645:CDS | 30.0% | |
| TTTAGTAGATTATGTCTTGC+TGG | + | chr5.1:3563531-3563550 | MS.gene024645:intron | 30.0% | |
| ! | CTGGGTATTTATATTTTCTG+AGG | - | chr5.1:3563576-3563595 | None:intergenic | 30.0% |
| ! | TTTAATAGAGTTGGTTCCAA+TGG | + | chr5.1:3563195-3563214 | MS.gene024645:intron | 30.0% |
| ! | TTTTCATTGTCAAGTAGACT+TGG | + | chr5.1:3562972-3562991 | MS.gene024645:intron | 30.0% |
| !! | ATTGTTCTATCCAAGTTGAT+AGG | + | chr5.1:3563221-3563240 | MS.gene024645:intron | 30.0% |
| !! | CAAGCATACTCATTTTTATG+TGG | - | chr5.1:3563383-3563402 | None:intergenic | 30.0% |
| !! | TGTTTTATGCGGGTTAATTT+TGG | + | chr5.1:3562864-3562883 | MS.gene024645:intron | 30.0% |
| !! | TTGTTCTATCCAAGTTGATA+GGG | + | chr5.1:3563222-3563241 | MS.gene024645:intron | 30.0% |
| !! | TTTGTTATGGTGTTTTATGC+GGG | + | chr5.1:3562854-3562873 | MS.gene024645:intron | 30.0% |
| AAGGAAATCGAGTCAATATG+AGG | - | chr5.1:3563855-3563874 | None:intergenic | 35.0% | |
| ACTCAATTCCATCATTGGTA+AGG | - | chr5.1:3562396-3562415 | None:intergenic | 35.0% | |
| AGCAATATACACAAGACACA+AGG | - | chr5.1:3562944-3562963 | None:intergenic | 35.0% | |
| AGCTTAATCACTTGCAGATT+TGG | - | chr5.1:3562307-3562326 | None:intergenic | 35.0% | |
| ATAAATACCCAGATTGAGAG+AGG | + | chr5.1:3563584-3563603 | MS.gene024645:intron | 35.0% | |
| ATCGCCCTAGGTAATTAATT+TGG | + | chr5.1:3562515-3562534 | MS.gene024645:intron | 35.0% | |
| ATGCACCATAACTCAAAGTA+AGG | - | chr5.1:3563995-3564014 | None:intergenic | 35.0% | |
| ATTCTGCCCACAAAAACATT+CGG | + | chr5.1:3563306-3563325 | MS.gene024645:intron | 35.0% | |
| ATTCTTCTGACTCTATTGCA+GGG | + | chr5.1:3564134-3564153 | MS.gene024645:intron | 35.0% | |
| CAAATCTAGGGAATATGTGA+GGG | + | chr5.1:3562339-3562358 | MS.gene024645:CDS | 35.0% | |
| CATAGTGTATACCAACTTGT+AGG | - | chr5.1:3563963-3563982 | None:intergenic | 35.0% | |
| GAGAAACTCAATTCCATCAT+TGG | - | chr5.1:3562401-3562420 | None:intergenic | 35.0% | |
| GATACGATGATGATTCTGTT+CGG | + | chr5.1:3562826-3562845 | MS.gene024645:intron | 35.0% | |
| GCAATATACACAAGACACAA+GGG | - | chr5.1:3562943-3562962 | None:intergenic | 35.0% | |
| GTACTATTAGCAGTATGTCA+CGG | + | chr5.1:3563774-3563793 | MS.gene024645:intron | 35.0% | |
| TACTATTAGCAGTATGTCAC+GGG | + | chr5.1:3563775-3563794 | MS.gene024645:intron | 35.0% | |
| TATTCTTCTGACTCTATTGC+AGG | + | chr5.1:3564133-3564152 | MS.gene024645:intron | 35.0% | |
| TATTTGGTCGGTTGATTGAA+TGG | + | chr5.1:3562573-3562592 | MS.gene024645:intron | 35.0% | |
| TCAAAAGCTAAATCCAGTTG+TGG | - | chr5.1:3563810-3563829 | None:intergenic | 35.0% | |
| TCAAATCTAGGGAATATGTG+AGG | + | chr5.1:3562338-3562357 | MS.gene024645:CDS | 35.0% | |
| TCTCTTGGATAAAGTAGCAA+AGG | + | chr5.1:3563645-3563664 | MS.gene024645:intron | 35.0% | |
| TGGATAGAACAATGAACCAT+TGG | - | chr5.1:3563214-3563233 | None:intergenic | 35.0% | |
| TTATTGCACAAGACATACCT+TGG | - | chr5.1:3562155-3562174 | None:intergenic | 35.0% | |
| TTGCTTGGATGAACTATTAC+TGG | + | chr5.1:3562368-3562387 | MS.gene024645:CDS | 35.0% | |
| TTTCTCCATCAAATCTTGGT+GGG | - | chr5.1:3562617-3562636 | None:intergenic | 35.0% | |
| TTTGATGGAGAAAGGAGATT+TGG | + | chr5.1:3562624-3562643 | MS.gene024645:CDS | 35.0% | |
| ! | ATGATGGAATTGAGTTTCTC+AGG | + | chr5.1:3562401-3562420 | MS.gene024645:CDS | 35.0% |
| ! | CTCTACCTTACTTTGAGTTA+TGG | + | chr5.1:3563987-3564006 | MS.gene024645:intron | 35.0% |
| ! | CTGTTCGGTTCATTTTGTTA+TGG | + | chr5.1:3562841-3562860 | MS.gene024645:intron | 35.0% |
| ! | GCGTAAATGGATTCAAAGAA+TGG | - | chr5.1:3562050-3562069 | None:intergenic | 35.0% |
| ! | TAAGCATCGTTTGAACTAGT+TGG | - | chr5.1:3564209-3564228 | None:intergenic | 35.0% |
| !! | AATGTTTTTGTGGGCAGAAT+TGG | - | chr5.1:3563306-3563325 | None:intergenic | 35.0% |
| !! | ACAAAAACATTCGGTTTTGG+AGG | + | chr5.1:3563315-3563334 | MS.gene024645:intron | 35.0% |
| !! | ATGTTTTTGTGGGCAGAATT+GGG | - | chr5.1:3563305-3563324 | None:intergenic | 35.0% |
| !! | CCAAAACCGAATGTTTTTGT+GGG | - | chr5.1:3563315-3563334 | None:intergenic | 35.0% |
| !! | TCCAAAACCGAATGTTTTTG+TGG | - | chr5.1:3563316-3563335 | None:intergenic | 35.0% |
| !!! | AATGGAATGTGTTTTGACAG+GGG | + | chr5.1:3562591-3562610 | MS.gene024645:intron | 35.0% |
| !!! | CAAAAACATTCGGTTTTGGA+GGG | + | chr5.1:3563316-3563335 | MS.gene024645:intron | 35.0% |
| !!! | GAATGGAATGTGTTTTGACA+GGG | + | chr5.1:3562590-3562609 | MS.gene024645:intron | 35.0% |
| !!! | TGAATGGAATGTGTTTTGAC+AGG | + | chr5.1:3562589-3562608 | MS.gene024645:intron | 35.0% |
| AAATTGAGTGGGACATTGCT+TGG | + | chr5.1:3563729-3563748 | MS.gene024645:intron | 40.0% | |
| AGAGTACATCTCAAACTTGC+TGG | + | chr5.1:3563039-3563058 | MS.gene024645:intron | 40.0% | |
| AGTCAATATGAGGTGATTCG+AGG | - | chr5.1:3563845-3563864 | None:intergenic | 40.0% | |
| ATCTGCAAATACCTCTTCCA+AGG | + | chr5.1:3562135-3562154 | MS.gene024645:CDS | 40.0% | |
| CACCAAGATTTGATGGAGAA+AGG | + | chr5.1:3562616-3562635 | MS.gene024645:CDS | 40.0% | |
| CTCCTTTCTCCATCAAATCT+TGG | - | chr5.1:3562621-3562640 | None:intergenic | 40.0% | |
| CTTTCTCCATCAAATCTTGG+TGG | - | chr5.1:3562618-3562637 | None:intergenic | 40.0% | |
| GACATTGCTTGGATAGACAA+AGG | + | chr5.1:3563740-3563759 | MS.gene024645:intron | 40.0% | |
| GATGCAGAGCTTCAAATCTA+GGG | + | chr5.1:3562327-3562346 | MS.gene024645:CDS | 40.0% | |
| GGTATTTGCAGATCTCTCTA+CGG | - | chr5.1:3562128-3562147 | None:intergenic | 40.0% | |
| GTCAAATGCTTCTTCTCTCT+TGG | + | chr5.1:3563630-3563649 | MS.gene024645:intron | 40.0% | |
| GTCAATATGAGGTGATTCGA+GGG | - | chr5.1:3563844-3563863 | None:intergenic | 40.0% | |
| TCAATATGAGGTGATTCGAG+GGG | - | chr5.1:3563843-3563862 | None:intergenic | 40.0% | |
| TGATGCAGAGCTTCAAATCT+AGG | + | chr5.1:3562326-3562345 | MS.gene024645:CDS | 40.0% | |
| ! | ATGTGAGGGAAACTTTTGCT+TGG | + | chr5.1:3562353-3562372 | MS.gene024645:CDS | 40.0% |
| ! | CCCACAAAAACATTCGGTTT+TGG | + | chr5.1:3563312-3563331 | MS.gene024645:intron | 40.0% |
| ! | TTGATTTGATCTCCACAGTG+TGG | + | chr5.1:3562915-3562934 | MS.gene024645:intron | 40.0% |
| !! | AGATTTGGCACATCGATTTC+TGG | - | chr5.1:3562292-3562311 | None:intergenic | 40.0% |
| !! | GATTTGGCACATCGATTTCT+GGG | - | chr5.1:3562291-3562310 | None:intergenic | 40.0% |
| !! | TACTGGTTCCTTACCAATGA+TGG | + | chr5.1:3562385-3562404 | MS.gene024645:CDS | 40.0% |
| AATACCCAGATTGAGAGAGG+AGG | + | chr5.1:3563587-3563606 | MS.gene024645:intron | 45.0% | |
| CAATATGAGGTGATTCGAGG+GGG | - | chr5.1:3563842-3563861 | None:intergenic | 45.0% | |
| CACAAGACATACCTTGGAAG+AGG | - | chr5.1:3562149-3562168 | None:intergenic | 45.0% | |
| GAATTTGGAGGAGACAAAGG+TGG | + | chr5.1:3562693-3562712 | MS.gene024645:CDS | 45.0% | |
| GATGGAGAAAGGAGATTTGG+TGG | + | chr5.1:3562627-3562646 | MS.gene024645:CDS | 45.0% | |
| GGTGAATTTGGAGGAGACAA+AGG | + | chr5.1:3562690-3562709 | MS.gene024645:CDS | 45.0% | |
| GTAGCAGGAACAATCTCAGA+TGG | - | chr5.1:3562442-3562461 | None:intergenic | 45.0% | |
| TATTAGCAGTATGTCACGGG+CGG | + | chr5.1:3563778-3563797 | MS.gene024645:intron | 45.0% | |
| TCATCCATCATGGCAAGTTC+AGG | - | chr5.1:3563270-3563289 | None:intergenic | 45.0% | |
| ! | CTGACTACAGGCCTTCTTTT+GGG | + | chr5.1:3562724-3562743 | MS.gene024645:CDS | 45.0% |
| ! | GTGATCGGTTTCATCCATCA+TGG | - | chr5.1:3563280-3563299 | None:intergenic | 45.0% |
| ! | TGACTACAGGCCTTCTTTTG+GGG | + | chr5.1:3562725-3562744 | MS.gene024645:CDS | 45.0% |
| ! | TTTTTGTGGGCAGAATTGGG+CGG | - | chr5.1:3563302-3563321 | None:intergenic | 45.0% |
| !! | AAGTTGATAGGGTTGAGCGT+CGG | + | chr5.1:3563233-3563252 | MS.gene024645:intron | 45.0% |
| !! | GGGAGTTTGCTATGCAAAGA+AGG | + | chr5.1:3562246-3562265 | MS.gene024645:CDS | 45.0% |
| !! | TCCTGCTACTTTGAAGAAGC+AGG | + | chr5.1:3562453-3562472 | MS.gene024645:CDS | 45.0% |
| !! | ATACTTTAATAATATTAAAA+TGG | - | chr5.1:3563678-3563697 | None:intergenic | 5.0% |
| AAAGAAGGCCTGTAGTCAGC+TGG | - | chr5.1:3562723-3562742 | None:intergenic | 50.0% | |
| AATTACCTAGGGCGATCACC+AGG | - | chr5.1:3562511-3562530 | None:intergenic | 50.0% | |
| AATTCACCAGCAGGTCCTCT+TGG | - | chr5.1:3562678-3562697 | None:intergenic | 50.0% | |
| AGAGGACCTGCTGGTGAATT+TGG | + | chr5.1:3562678-3562697 | MS.gene024645:CDS | 50.0% | |
| ATTAGCAGTATGTCACGGGC+GGG | + | chr5.1:3563779-3563798 | MS.gene024645:intron | 50.0% | |
| ATTCACCAGCAGGTCCTCTT+GGG | - | chr5.1:3562677-3562696 | None:intergenic | 50.0% | |
| GACGCTCAACCCTATCAACT+TGG | - | chr5.1:3563234-3563253 | None:intergenic | 50.0% | |
| GCCTGCTTCTTCAAAGTAGC+AGG | - | chr5.1:3562457-3562476 | None:intergenic | 50.0% | |
| GGGTCAGATTTCACGGGTAA+CGG | - | chr5.1:3563888-3563907 | None:intergenic | 50.0% | |
| GGTCAGATTTCACGGGTAAC+GGG | - | chr5.1:3563887-3563906 | None:intergenic | 50.0% | |
| GGTGATCGGGTCAGATTTCA+CGG | - | chr5.1:3563895-3563914 | None:intergenic | 50.0% | |
| GTGATCGGGTCAGATTTCAC+GGG | - | chr5.1:3563894-3563913 | None:intergenic | 50.0% | |
| TCTCCTCCAAATTCACCAGC+AGG | - | chr5.1:3562687-3562706 | None:intergenic | 50.0% | |
| ! | ACAACAACCGGTTGCTGTTC+AGG | - | chr5.1:3563916-3563935 | None:intergenic | 50.0% |
| ! | ACCGGTTGTTGTTCGTGTCA+CGG | + | chr5.1:3563924-3563943 | MS.gene024645:intron | 50.0% |
| ! | AGAGAGGAGGCGCAAAACAT+TGG | + | chr5.1:3563600-3563619 | MS.gene024645:intron | 50.0% |
| ! | GCTGACTACAGGCCTTCTTT+TGG | + | chr5.1:3562723-3562742 | MS.gene024645:CDS | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | + | chr5.1:3562639-3562658 | MS.gene024645:CDS | 50.0% |
| !! | GGGTAACGGGTGAAACACAA+AGG | - | chr5.1:3563874-3563893 | None:intergenic | 50.0% |
| !!! | CATTCGGTTTTGGAGGGTCT+CGG | + | chr5.1:3563322-3563341 | MS.gene024645:intron | 50.0% |
| AAGAAGCAGGCTAAGCCAGC+TGG | + | chr5.1:3562466-3562485 | MS.gene024645:CDS | 55.0% | |
| ACTCTATTGCAGGGTCCTGG+TGG | + | chr5.1:3564143-3564162 | MS.gene024645:intron | 55.0% | |
| AGGGGCCCACCAAGATTTGA+TGG | + | chr5.1:3562609-3562628 | MS.gene024645:intron | 55.0% | |
| ATCACCAGGAGGACCACCAA+AGG | - | chr5.1:3562497-3562516 | None:intergenic | 55.0% | |
| CCCGTGACACGAACAACAAC+CGG | - | chr5.1:3563928-3563947 | None:intergenic | 55.0% | |
| CCGATCACCTGAACAGCAAC+CGG | + | chr5.1:3563906-3563925 | MS.gene024645:intron | 55.0% | |
| CTGACTCTATTGCAGGGTCC+TGG | + | chr5.1:3564140-3564159 | MS.gene024645:intron | 55.0% | |
| GACACAAGGGAACCACACTG+TGG | - | chr5.1:3562930-3562949 | None:intergenic | 55.0% | |
| GGACCTGCTGGTGAATTTGG+AGG | + | chr5.1:3562681-3562700 | MS.gene024645:CDS | 55.0% | |
| TCACCAGGAGGACCACCAAA+GGG | - | chr5.1:3562496-3562515 | None:intergenic | 55.0% | |
| TGCGCCTCCTCTCTCAATCT+GGG | - | chr5.1:3563594-3563613 | None:intergenic | 55.0% | |
| TGTTGCTCGGCCCTACAAGT+TGG | + | chr5.1:3563949-3563968 | MS.gene024645:intron | 55.0% | |
| TTGCGCCTCCTCTCTCAATC+TGG | - | chr5.1:3563595-3563614 | None:intergenic | 55.0% | |
| ! | CCGGTTGCTGTTCAGGTGAT+CGG | - | chr5.1:3563909-3563928 | None:intergenic | 55.0% |
| ! | CCGGTTGTTGTTCGTGTCAC+GGG | + | chr5.1:3563925-3563944 | MS.gene024645:intron | 55.0% |
| ! | CGGTTGCTGTTCAGGTGATC+GGG | - | chr5.1:3563908-3563927 | None:intergenic | 55.0% |
| ! | TCGTGTCACGGGTTGTTGCT+CGG | + | chr5.1:3563936-3563955 | MS.gene024645:intron | 55.0% |
| !! | GATAGGGTTGAGCGTCGGAT+GGG | + | chr5.1:3563238-3563257 | MS.gene024645:intron | 55.0% |
| !! | TGATAGGGTTGAGCGTCGGA+TGG | + | chr5.1:3563237-3563256 | MS.gene024645:intron | 55.0% |
| !!! | GTTTTGGAGGGTCTCGGCTA+GGG | + | chr5.1:3563328-3563347 | MS.gene024645:intron | 55.0% |
| AAGCCAGCTGGAAGGCCCTT+TGG | + | chr5.1:3562478-3562497 | MS.gene024645:CDS | 60.0% | |
| AGCAGGCTAAGCCAGCTGGA+AGG | + | chr5.1:3562470-3562489 | MS.gene024645:CDS | 60.0% | |
| CCTGGTGGTAGACCTGGCTT+CGG | + | chr5.1:3564158-3564177 | MS.gene024645:CDS | 60.0% | |
| CGGGCCTGAACTTGCCATGA+TGG | + | chr5.1:3563263-3563282 | MS.gene024645:intron | 60.0% | |
| GGCCTCCACGGTATCCATCA+CGG | - | chr5.1:3562656-3562675 | None:intergenic | 60.0% | |
| GGGCAGAATTGGGCGGTGAT+CGG | - | chr5.1:3563295-3563314 | None:intergenic | 60.0% | |
| GTGGAGCTCCAGCTGACTAC+AGG | + | chr5.1:3562712-3562731 | MS.gene024645:CDS | 60.0% | |
| TACCTAGGGCGATCACCAGG+AGG | - | chr5.1:3562508-3562527 | None:intergenic | 60.0% | |
| !! | GACCGTGATGGATACCGTGG+AGG | + | chr5.1:3562651-3562670 | MS.gene024645:CDS | 60.0% |
| !! | GGTCGTGGTTCTGGTGGCTT+TGG | + | chr5.1:3564179-3564198 | MS.gene024645:CDS | 60.0% |
| !! | GGTGACCGTGATGGATACCG+TGG | + | chr5.1:3562648-3562667 | MS.gene024645:CDS | 60.0% |
| !! | GGTTGAGCGTCGGATGGGTT+CGG | + | chr5.1:3563243-3563262 | MS.gene024645:intron | 60.0% |
| !! | GTTGAGCGTCGGATGGGTTC+GGG | + | chr5.1:3563244-3563263 | MS.gene024645:intron | 60.0% |
| !!! | GGTTTTGGAGGGTCTCGGCT+AGG | + | chr5.1:3563327-3563346 | MS.gene024645:intron | 60.0% |
| CAGGGTCCTGGTGGTAGACC+TGG | + | chr5.1:3564152-3564171 | MS.gene024645:intron | 65.0% | |
| CAGGTCCTCTTGGGCCTCCA+CGG | - | chr5.1:3562668-3562687 | None:intergenic | 65.0% | |
| CCACCAAAGGGCCTTCCAGC+TGG | - | chr5.1:3562484-3562503 | None:intergenic | 65.0% | |
| CCAGAACCACGACCGAAGCC+AGG | - | chr5.1:3564173-3564192 | None:intergenic | 65.0% | |
| CCAGCTGGAAGGCCCTTTGG+TGG | + | chr5.1:3562481-3562500 | MS.gene024645:CDS | 65.0% | |
| CCGAAGCCAGGTCTACCACC+AGG | - | chr5.1:3564161-3564180 | None:intergenic | 65.0% | |
| CCTGGCTTCGGTCGTGGTTC+TGG | + | chr5.1:3564170-3564189 | MS.gene024645:CDS | 65.0% | |
| GGATACCGTGGAGGCCCAAG+AGG | + | chr5.1:3562660-3562679 | MS.gene024645:CDS | 65.0% | |
| GGTAGACCTGGCTTCGGTCG+TGG | + | chr5.1:3564164-3564183 | MS.gene024645:CDS | 65.0% | |
| GTCCTCCTGGTGATCGCCCT+AGG | + | chr5.1:3562503-3562522 | MS.gene024645:CDS | 65.0% | |
| ! | AGGCCCTTTGGTGGTCCTCC+TGG | + | chr5.1:3562490-3562509 | MS.gene024645:CDS | 65.0% |
| !! | GGCTTCGGTCGTGGTTCTGG+TGG | + | chr5.1:3564173-3564192 | MS.gene024645:CDS | 65.0% |
| CGGGCGGGTGTGTCCACAAC+TGG | + | chr5.1:3563794-3563813 | MS.gene024645:intron | 70.0% | |
| GGAGGCCCAAGAGGACCTGC+TGG | + | chr5.1:3562669-3562688 | MS.gene024645:CDS | 70.0% | |
| GGAGGGTCTCGGCTAGGGCT+GGG | + | chr5.1:3563333-3563352 | MS.gene024645:intron | 70.0% | |
| TGGAGGGTCTCGGCTAGGGC+TGG | + | chr5.1:3563332-3563351 | MS.gene024645:intron | 70.0% | |
| ! | TAGGGCTGGGCGGGTGGGTT+GGG | + | chr5.1:3563346-3563365 | MS.gene024645:intron | 70.0% |
| CTAGGGCTGGGCGGGTGGGT+TGG | + | chr5.1:3563345-3563364 | MS.gene024645:intron | 75.0% | |
| GGGTCTCGGCTAGGGCTGGG+CGG | + | chr5.1:3563336-3563355 | MS.gene024645:intron | 75.0% | |
| GGTCTCGGCTAGGGCTGGGC+GGG | + | chr5.1:3563337-3563356 | MS.gene024645:intron | 75.0% | |
| TCGGCTAGGGCTGGGCGGGT+GGG | + | chr5.1:3563341-3563360 | MS.gene024645:intron | 75.0% | |
| ! | CTCGGCTAGGGCTGGGCGGG+TGG | + | chr5.1:3563340-3563359 | MS.gene024645:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 3562009 | 3564229 | 3562009 | ID=MS.gene024645 |
| chr5.1 | mRNA | 3562009 | 3564229 | 3562009 | ID=MS.gene024645.t1;Parent=MS.gene024645 |
| chr5.1 | exon | 3562009 | 3562011 | 3562009 | ID=MS.gene024645.t1.exon1;Parent=MS.gene024645.t1 |
| chr5.1 | CDS | 3562009 | 3562011 | 3562009 | ID=cds.MS.gene024645.t1;Parent=MS.gene024645.t1 |
| chr5.1 | exon | 3562108 | 3562156 | 3562108 | ID=MS.gene024645.t1.exon2;Parent=MS.gene024645.t1 |
| chr5.1 | CDS | 3562108 | 3562156 | 3562108 | ID=cds.MS.gene024645.t1;Parent=MS.gene024645.t1 |
| chr5.1 | exon | 3562245 | 3562524 | 3562245 | ID=MS.gene024645.t1.exon3;Parent=MS.gene024645.t1 |
| chr5.1 | CDS | 3562245 | 3562524 | 3562245 | ID=cds.MS.gene024645.t1;Parent=MS.gene024645.t1 |
| chr5.1 | exon | 3562611 | 3562746 | 3562611 | ID=MS.gene024645.t1.exon4;Parent=MS.gene024645.t1 |
| chr5.1 | CDS | 3562611 | 3562746 | 3562611 | ID=cds.MS.gene024645.t1;Parent=MS.gene024645.t1 |
| chr5.1 | exon | 3564155 | 3564229 | 3564155 | ID=MS.gene024645.t1.exon5;Parent=MS.gene024645.t1 |
| chr5.1 | CDS | 3564155 | 3564229 | 3564155 | ID=cds.MS.gene024645.t1;Parent=MS.gene024645.t1 |
| Gene Sequence |
| Protein sequence |
