AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024657

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024657.t1 MTR_5g009780 95.143 803 39 0 1 803 1 803 0.0 1537
MS.gene024657.t1 MTR_5g009800 91.562 794 46 2 1 794 1 773 0.0 1460
MS.gene024657.t1 MTR_5g009770 88.903 802 85 2 1 800 1 800 0.0 1453
MS.gene024657.t1 MTR_5g009770 87.779 671 78 2 132 800 1 669 0.0 1205
MS.gene024657.t1 MTR_4g078120 60.468 812 299 6 6 800 3 809 0.0 957
MS.gene024657.t1 MTR_4g123583 59.446 794 306 5 6 786 3 793 0.0 928
MS.gene024657.t1 MTR_8g093780 47.222 792 397 12 4 779 5 791 0.0 717
MS.gene024657.t1 MTR_3g096380 46.230 809 417 10 10 803 13 818 0.0 707
MS.gene024657.t1 MTR_2g011520 44.720 767 414 8 18 779 3 764 0.0 673
MS.gene024657.t1 MTR_7g099800 49.815 811 358 16 15 779 8 815 0.0 670
MS.gene024657.t1 MTR_7g099820 47.342 790 382 13 16 780 5 785 0.0 654
MS.gene024657.t1 MTR_7g099750 48.967 823 340 17 15 779 8 808 0.0 649
MS.gene024657.t1 MTR_7g099820 49.067 697 330 9 16 694 5 694 0.0 625
MS.gene024657.t1 MTR_3g031170 34.190 778 476 11 10 778 28 778 7.44e-138 427
MS.gene024657.t1 MTR_2g040100 33.782 817 488 22 22 802 35 834 1.42e-132 415
MS.gene024657.t1 MTR_3g071990 31.928 783 499 13 6 778 7 765 1.52e-126 398
MS.gene024657.t1 MTR_1g043400 32.165 799 487 20 18 782 11 788 8.65e-123 388
MS.gene024657.t1 MTR_1g045870 31.950 795 479 19 18 782 11 773 1.64e-120 382
MS.gene024657.t1 MTR_0002s1180 31.084 830 508 19 8 798 2 806 8.24e-119 378
MS.gene024657.t1 MTR_5g067690 31.652 793 493 16 19 782 23 795 3.87e-118 376
MS.gene024657.t1 MTR_5g074340 30.691 782 493 17 18 778 30 783 1.64e-116 372
MS.gene024657.t1 MTR_5g074380 31.579 779 486 16 19 778 76 826 2.90e-115 370
MS.gene024657.t1 MTR_5g074360 31.057 776 494 15 19 778 31 781 1.51e-113 364
MS.gene024657.t1 MTR_3g071990 32.194 702 442 13 87 778 6 683 7.66e-112 357
MS.gene024657.t1 MTR_3g037270 30.866 797 507 19 9 782 17 792 1.09e-109 354
MS.gene024657.t1 MTR_3g071880 29.911 789 507 20 18 777 19 790 1.60e-109 353
MS.gene024657.t1 MTR_3g071870 30.000 780 493 16 18 767 32 788 2.17e-109 353
MS.gene024657.t1 MTR_5g074320 31.586 725 459 14 68 778 10 711 1.39e-107 347
MS.gene024657.t1 MTR_3g037260 29.514 803 531 16 22 801 20 810 1.59e-104 340
MS.gene024657.t1 MTR_3g031160 28.299 788 521 17 10 781 23 782 9.56e-101 330
MS.gene024657.t1 MTR_6g015940 30.087 801 500 20 4 778 19 785 2.75e-96 318
MS.gene024657.t1 MTR_8g085260 28.892 803 515 18 1 778 18 789 5.21e-94 311
MS.gene024657.t1 MTR_4g037755 29.281 765 499 20 49 790 35 780 1.83e-93 310
MS.gene024657.t1 MTR_4g029520 27.756 771 515 17 38 781 25 780 5.04e-93 309
MS.gene024657.t1 MTR_5g088470 28.094 808 512 23 4 778 17 788 2.24e-91 305
MS.gene024657.t1 MTR_3g498715 28.269 803 493 20 9 774 32 788 7.46e-91 303
MS.gene024657.t1 MTR_6g053320 29.468 733 460 20 81 785 69 772 1.26e-90 302
MS.gene024657.t1 MTR_5g088450 28.215 801 523 18 4 778 17 791 2.02e-89 300
MS.gene024657.t1 MTR_3g110700 27.023 766 527 13 38 781 22 777 4.43e-89 298
MS.gene024657.t1 MTR_3g083850 27.385 807 515 19 4 778 17 784 8.04e-88 295
MS.gene024657.t1 MTR_7g085870 27.708 794 501 20 25 778 34 794 3.18e-86 291
MS.gene024657.t1 MTR_5g088430 27.869 793 512 19 14 778 28 788 3.80e-86 291
MS.gene024657.t1 MTR_3g031030 27.901 767 481 19 49 779 35 765 2.08e-83 283
MS.gene024657.t1 MTR_5g088790 28.375 800 519 19 9 778 39 814 1.46e-78 270
MS.gene024657.t1 MTR_5g088840 27.826 805 518 20 9 778 39 815 1.05e-77 268
MS.gene024657.t1 MTR_7g052680 27.591 801 524 19 9 778 39 814 5.49e-77 266
MS.gene024657.t1 MTR_7g053000 26.976 797 534 15 9 778 39 814 9.94e-77 265
MS.gene024657.t1 MTR_7g052970 27.102 797 533 16 9 778 39 814 9.24e-76 263
MS.gene024657.t1 MTR_3g465680 28.329 413 286 4 20 426 44 452 5.00e-51 193
MS.gene024657.t1 MTR_3g465680 30.412 388 233 12 401 778 555 915 8.63e-40 159
MS.gene024657.t1 MTR_7g052895 23.400 547 391 10 9 534 39 578 5.83e-41 161
MS.gene024657.t1 MTR_5g083560 31.672 341 194 10 469 796 1 315 2.52e-37 143
MS.gene024657.t1 MTR_5g061460 56.250 96 42 0 455 550 15 110 2.64e-31 120
MS.gene024657.t1 MTR_1g082340 56.250 96 42 0 455 550 82 177 5.81e-31 122
MS.gene024657.t1 MTR_3g083860 25.000 236 135 7 14 244 28 226 1.42e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024657.t1 AT5G41610 66.961 793 251 7 1 785 1 790 0.0 1049
MS.gene024657.t1 AT5G41610 66.961 793 251 7 1 785 1 790 0.0 1049
MS.gene024657.t1 AT4G23700 61.322 817 296 7 6 802 3 819 0.0 978
MS.gene024657.t1 AT4G23700 61.322 817 296 7 6 802 3 819 0.0 978
MS.gene024657.t1 AT5G41610 66.943 723 230 6 71 785 1 722 0.0 949
MS.gene024657.t1 AT3G17630 60.618 777 300 3 3 779 2 772 0.0 932
MS.gene024657.t1 AT3G17630 60.618 777 300 3 3 779 2 772 0.0 932
MS.gene024657.t1 AT1G64170 56.258 791 312 14 11 779 14 792 0.0 824
MS.gene024657.t1 AT2G13620 47.619 798 380 10 4 779 8 789 0.0 716
MS.gene024657.t1 AT3G53720 50.616 812 354 13 15 781 8 817 0.0 692
MS.gene024657.t1 AT3G53720 48.993 745 333 13 82 781 2 744 0.0 597
MS.gene024657.t1 AT1G05580 34.456 772 478 12 23 779 41 799 1.20e-136 426
MS.gene024657.t1 AT2G31910 33.290 769 491 10 24 779 28 787 4.75e-125 395
MS.gene024657.t1 AT1G05580 34.714 700 429 12 95 779 2 688 3.87e-124 390
MS.gene024657.t1 AT1G06970 30.937 779 507 14 10 778 27 784 3.74e-112 361
MS.gene024657.t1 AT2G31910 33.238 698 444 10 95 779 2 690 2.24e-110 353
MS.gene024657.t1 AT2G31910 33.238 698 444 10 95 779 2 690 2.24e-110 353
MS.gene024657.t1 AT2G30240 29.975 804 529 15 10 800 29 811 3.52e-103 337
MS.gene024657.t1 AT5G58460 27.869 793 519 14 21 778 53 827 2.56e-93 311
MS.gene024657.t1 AT5G37060 27.330 794 524 15 21 778 53 829 1.61e-90 304
MS.gene024657.t1 AT5G22900 26.838 816 521 18 14 778 27 817 3.28e-86 291
MS.gene024657.t1 AT5G01690 27.006 785 524 17 10 778 16 767 5.37e-84 284
MS.gene024657.t1 AT3G44900 27.150 814 527 19 14 783 26 817 1.81e-79 273
MS.gene024657.t1 AT3G52080 26.812 828 509 21 3 778 2 784 5.80e-78 268
MS.gene024657.t1 AT2G28180 28.035 799 516 19 12 778 37 808 1.70e-77 267
MS.gene024657.t1 AT1G08150 28.025 785 491 22 24 772 56 802 2.52e-75 261
MS.gene024657.t1 AT1G08140 27.660 752 483 23 57 778 83 803 1.05e-73 257
MS.gene024657.t1 AT5G01680 25.735 816 523 21 1 778 5 775 8.51e-72 251
MS.gene024657.t1 AT1G79400 26.813 772 538 15 24 778 11 772 8.75e-71 248
MS.gene024657.t1 AT2G28170 26.845 786 515 23 19 778 47 798 2.13e-67 239
MS.gene024657.t1 AT5G22910 27.013 770 499 17 31 768 47 785 4.87e-65 232
MS.gene024657.t1 AT1G16380 24.715 789 531 19 38 790 24 785 9.30e-65 231
MS.gene024657.t1 AT3G44930 25.557 763 516 15 31 769 35 769 7.25e-63 226
MS.gene024657.t1 AT3G44910 24.000 800 530 17 1 767 1 755 4.63e-60 218
MS.gene024657.t1 AT3G44920 24.643 771 527 16 31 776 35 776 1.37e-58 214
MS.gene024657.t1 AT1G08135 25.176 711 462 20 95 778 127 794 2.19e-51 193

Find 185 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATCTTCTAAAACCTTTA+AGG 0.099756 5.1:+3315336 MS.gene024657:CDS
TTCCGCATTTCTTGTATATA+TGG 0.132317 5.1:+3316173 MS.gene024657:CDS
GGTGAATGTTCCTCCATTTC+TGG 0.139824 5.1:-3318157 None:intergenic
ACCTCTCACAAAATTCTTTA+AGG 0.140574 5.1:-3317262 None:intergenic
TGATCAGACCTTTGCTATTA+TGG 0.150282 5.1:+3317004 MS.gene024657:CDS
GCTCTTGCTGTTGCCTTATC+AGG 0.189626 5.1:+3316330 MS.gene024657:CDS
CCGCACAACAGCATCTATTT+TGG 0.192051 5.1:+3318093 MS.gene024657:CDS
GACAAAATGGGTTGCCGTTT+TGG 0.198490 5.1:+3317315 MS.gene024657:CDS
TCCTGTATTAGCCCGTATTT+TGG 0.201280 5.1:+3316221 MS.gene024657:CDS
ATGACTCGAGGTTGCCTTAA+AGG 0.205612 5.1:-3315350 None:intergenic
GTGATCTGTCCTACAATATT+AGG 0.206047 5.1:-3317785 None:intergenic
GTTACATTTACGGCTTGTTT+TGG 0.223359 5.1:+3316744 MS.gene024657:CDS
GCACAAAAGGTAAGACAAAA+TGG 0.243930 5.1:+3317302 MS.gene024657:CDS
ATTTCTGGGACAAAGTTTAT+TGG 0.255303 5.1:-3318142 None:intergenic
CCGGCAAACGCTCCATCTTT+TGG 0.270031 5.1:-3316594 None:intergenic
TTAGCTGCTGTTCTGGCTGC+TGG 0.279693 5.1:+3316507 MS.gene024657:CDS
CCGATGCAGCCTGCGTCTAA+TGG 0.279802 5.1:+3315224 MS.gene024657:CDS
TGGGCCATCCATTTGAAAAT+TGG 0.287723 5.1:-3316435 None:intergenic
TGCTACATTAGCTGCTGTTC+TGG 0.289882 5.1:+3316500 MS.gene024657:CDS
CCTAAATCTCTGCGGAAAAC+TGG 0.313847 5.1:+3316045 MS.gene024657:CDS
AGAAGCGAGTGCGCGGAATT+AGG 0.315072 5.1:+3318037 MS.gene024657:CDS
GACCAACATAGCTACCATTC+AGG 0.327011 5.1:+3316692 MS.gene024657:CDS
ATCGGAATTCATGCCATGTT+TGG 0.328149 5.1:+3316546 MS.gene024657:CDS
GACCGTGAAGCTCTTGCTTA+TGG 0.329784 5.1:+3317704 MS.gene024657:CDS
GTCCTTGCCATTGCTATTGC+CGG 0.332317 5.1:+3316075 MS.gene024657:CDS
TCCGCATTTCTTGTATATAT+GGG 0.333877 5.1:+3316174 MS.gene024657:CDS
CCATTCAGGGGCTGCAGTCA+TGG 0.338451 5.1:+3316706 MS.gene024657:CDS
TTACCCTTTGCACTAGGAAT+TGG 0.338535 5.1:+3316105 MS.gene024657:CDS
TTATTGGAACCTAATATTGT+AGG 0.354215 5.1:+3317776 MS.gene024657:CDS
AACCTTTGTTGCTTATGAAA+TGG 0.354534 5.1:-3317506 None:intergenic
TTCTGCAACTTATTTCTTGT+GGG 0.359669 5.1:+3317977 MS.gene024657:CDS
TGGTTCATCGTTTGTTCTAC+AGG 0.363937 5.1:+3316125 MS.gene024657:CDS
TGCGGAAGTATTTACACCTT+TGG 0.366289 5.1:-3316157 None:intergenic
GCTCACCTTCATGGCATTGT+TGG 0.366554 5.1:-3316455 None:intergenic
AAAATAGAGGATCTTGTATC+TGG 0.375448 5.1:+3316630 MS.gene024657:CDS
CTCACCTTCATGGCATTGTT+GGG 0.377633 5.1:-3316454 None:intergenic
ATCTCCATTTGTGTCATTGT+GGG 0.381610 5.1:+3316362 MS.gene024657:CDS
CATCAACCGGCTCACCTTCA+TGG 0.381935 5.1:-3316464 None:intergenic
CATTCAGGGGCTGCAGTCAT+GGG 0.383910 5.1:+3316707 MS.gene024657:CDS
AACATTTCGAGCTGTGGTAT+TGG 0.387586 5.1:-3315192 None:intergenic
ATTGATGAAATTGCTATCAT+TGG 0.392049 5.1:-3317419 None:intergenic
CCAAAAGATGGAGCGTTTGC+CGG 0.392899 5.1:+3316594 MS.gene024657:CDS
TAATCTTATGCCAGGGTGTT+CGG 0.399773 5.1:-3317738 None:intergenic
AATAAACTTTGTCCCAGAAA+TGG 0.400832 5.1:+3318144 MS.gene024657:CDS
AGGATTCTTGCCTGTTTCCA+TGG 0.404187 5.1:+3317152 MS.gene024657:CDS
GAAAAGCACAACAATGCAAT+AGG 0.404326 5.1:-3317666 None:intergenic
ATCTAATACTGGAAGACTCT+TGG 0.407831 5.1:-3315965 None:intergenic
TCGAAGGCCGGACGGTGAAT+TGG 0.408471 5.1:+3318000 MS.gene024657:CDS
CCATGTTATTGTGGCGTTCG+AGG 0.411384 5.1:+3317364 MS.gene024657:CDS
TTGCCTGTTTCCATGGTTCA+AGG 0.413150 5.1:+3317159 MS.gene024657:CDS
TTTCTGCAACTTATTTCTTG+TGG 0.414228 5.1:+3317976 MS.gene024657:CDS
GTGAATGTTCCTCCATTTCT+GGG 0.415037 5.1:-3318156 None:intergenic
TGCAAAGGGTAAGCTTATTC+CGG 0.415247 5.1:-3316094 None:intergenic
CTACTTGGGCCGTCAGCGCT+TGG 0.415516 5.1:+3315907 MS.gene024657:CDS
ATTCCTTGAACCATGGAAAC+AGG 0.420826 5.1:-3317162 None:intergenic
TTTGCTAGAGTATCTAATAC+TGG 0.434840 5.1:-3315976 None:intergenic
GACGCAGGCTGCATCGGCGG+CGG 0.445153 5.1:-3315218 None:intergenic
TCTAATACTGGAAGACTCTT+GGG 0.445615 5.1:-3315964 None:intergenic
CCGCATTTCTTGTATATATG+GGG 0.447740 5.1:+3316175 MS.gene024657:CDS
GCCAAAATACGGGCTAATAC+AGG 0.448964 5.1:-3316222 None:intergenic
ATTTCTTGTGGGTCGAAGGC+CGG 0.449582 5.1:+3317988 MS.gene024657:CDS
ATCGATACTAATGGCACAAA+AGG 0.453823 5.1:+3317289 MS.gene024657:CDS
GCGTCTAATGGTGTATTTCA+AGG 0.458325 5.1:+3315236 MS.gene024657:CDS
ACACCCTGGCATAAGATTAG+TGG 0.462991 5.1:+3317742 MS.gene024657:CDS
TAGCTGCTGTTCTGGCTGCT+GGG 0.463429 5.1:+3316508 MS.gene024657:CDS
CCCCTGAATGGTAGCTATGT+TGG 0.463640 5.1:-3316694 None:intergenic
TTGTGTTAGCTGCATATAAG+AGG 0.463707 5.1:+3317066 MS.gene024657:CDS
ACGCAGGCTGCATCGGCGGC+GGG 0.465545 5.1:-3315217 None:intergenic
TTTGATGAATAGTAAAGGCT+TGG 0.466519 5.1:+3316839 MS.gene024657:CDS
TCATTGTGGGTCTTCTTAAG+TGG 0.468755 5.1:+3316375 MS.gene024657:CDS
ATCGATGATAAACTTGATTG+AGG 0.470338 5.1:+3317190 MS.gene024657:CDS
TTGAACGAGTCTTTAGTGCT+TGG 0.470752 5.1:+3316813 MS.gene024657:CDS
TCTTGCAGTCACAAGGGGAC+TGG 0.473223 5.1:+3315313 MS.gene024657:CDS
TTTGTTGATCGCGGGCTTGG+TGG 0.473988 5.1:+3317614 MS.gene024657:CDS
AAGACCCACAATGACACAAA+TGG 0.479162 5.1:-3316366 None:intergenic
TGACAGGGAGGAATCCTACT+TGG 0.484231 5.1:+3315892 MS.gene024657:intron
AATGATAGCAATTTCATCAA+TGG 0.488394 5.1:+3317421 MS.gene024657:CDS
AGGACCTGTTGGTGGCTTGT+TGG 0.488446 5.1:+3318057 MS.gene024657:CDS
GTCTTGTTCTTGCAGTCACA+AGG 0.489013 5.1:+3315306 MS.gene024657:CDS
GAAGATTCCGTGTCTCCATC+AGG 0.489657 5.1:-3318178 None:intergenic
CATATGTATAACTCATCAAC+CGG 0.492318 5.1:-3316477 None:intergenic
AGATTGGCTATTGCCTGATA+AGG 0.492432 5.1:-3316343 None:intergenic
CAACATCGGTAAAGATAGAA+AGG 0.492937 5.1:+3316878 MS.gene024657:CDS
CTCCATAAGCAAGAGCTTCA+CGG 0.493215 5.1:-3317706 None:intergenic
CCATGACTGCAGCCCCTGAA+TGG 0.495906 5.1:-3316706 None:intergenic
CCACTTGACACAAAATAAAG+TGG 0.501014 5.1:-3316663 None:intergenic
AGAGTCTCCAACATCAACTT+TGG 0.501856 5.1:-3317807 None:intergenic
GCAAAGGCCAATTCACCGTC+CGG 0.504951 5.1:-3318007 None:intergenic
GATGCCAACAAGCCACCAAC+AGG 0.505963 5.1:-3318061 None:intergenic
AATCTCCATTTGTGTCATTG+TGG 0.506174 5.1:+3316361 MS.gene024657:CDS
TGGGTCTTCTTAAGTGGGTG+TGG 0.508408 5.1:+3316381 MS.gene024657:CDS
GAACCAATTCCTAGTGCAAA+GGG 0.508620 5.1:-3316108 None:intergenic
TTCTATCTTTACCGATGTTG+AGG 0.509100 5.1:-3316875 None:intergenic
TCAATCAAGTTTATCATCGA+TGG 0.509658 5.1:-3317188 None:intergenic
ACTTATTTCTTGTGGGTCGA+AGG 0.511823 5.1:+3317984 MS.gene024657:CDS
TCTTGATTATGCACTTCCAT+TGG 0.513464 5.1:+3315268 MS.gene024657:CDS
AAAACCACTAATCTTATGCC+AGG 0.514861 5.1:-3317746 None:intergenic
CATTGTGGGTCTTCTTAAGT+GGG 0.515396 5.1:+3316376 MS.gene024657:CDS
AGCAAGAGCAAGAAGAATCC+AGG 0.517879 5.1:-3316316 None:intergenic
CACAAAAGGTAAGACAAAAT+GGG 0.518007 5.1:+3317303 MS.gene024657:CDS
TTATTCCGTCCAAGCGCTGA+CGG 0.519020 5.1:-3315916 None:intergenic
CTCGCTTCTTTCAAGAGCAA+AGG 0.521580 5.1:-3318023 None:intergenic
ACAATGACACAAATGGAGAT+TGG 0.521930 5.1:-3316359 None:intergenic
CCATTAGACGCAGGCTGCAT+CGG 0.522930 5.1:-3315224 None:intergenic
TCTTGCTTATGGAGCTCGTA+TGG 0.526592 5.1:+3317715 MS.gene024657:CDS
TTCCATTTCATAAGCAACAA+AGG 0.530602 5.1:+3317504 MS.gene024657:CDS
TTGGGCCGTCAGCGCTTGGA+CGG 0.534153 5.1:+3315911 MS.gene024657:CDS
GGGTTTGTCACGGATGCTAT+CGG 0.536342 5.1:+3316528 MS.gene024657:CDS
ATAAGCTTACCCTTTGCACT+AGG 0.536559 5.1:+3316099 MS.gene024657:CDS
ATAGATAATTGAGTCATCAC+TGG 0.537461 5.1:-3317897 None:intergenic
CGCATTTCTTGTATATATGG+GGG 0.537612 5.1:+3316176 MS.gene024657:CDS
TCTGGCTGCTGGGTTTGTCA+CGG 0.539409 5.1:+3316518 MS.gene024657:CDS
ACCAACATAGCTACCATTCA+GGG 0.542167 5.1:+3316693 MS.gene024657:CDS
CAGATCACCAAAGTTGATGT+TGG 0.543622 5.1:+3317800 MS.gene024657:CDS
ATGGAATATTCCTTGAACCA+TGG 0.546940 5.1:-3317169 None:intergenic
TGATGCAACAGTATCACAAT+GGG 0.550837 5.1:+3318116 MS.gene024657:CDS
TGGTGACCTTTATCCCAAAA+CGG 0.553372 5.1:-3317329 None:intergenic
TGCTCTTGTGGAGAAAATAG+AGG 0.555546 5.1:+3316617 MS.gene024657:CDS
GAGCATGCACCATGCTCAGT+TGG 0.559655 5.1:+3317587 MS.gene024657:CDS
CAAGCGCTGACGGCCCAAGT+AGG 0.564029 5.1:-3315906 None:intergenic
CAGTTAATGATGTAGCAGCC+TGG 0.564394 5.1:+3316298 MS.gene024657:CDS
ATGGAGGAACATTCACCTGA+TGG 0.565713 5.1:+3318163 MS.gene024657:CDS
TGAAAATTGGAAGGACAATG+AGG 0.565770 5.1:-3316422 None:intergenic
AACCACTAGTGTCGGCAGAA+TGG 0.566373 5.1:+3316260 MS.gene024657:CDS
CATATCTGTAAAATAGCCAA+TGG 0.568781 5.1:-3315284 None:intergenic
CACAAGAGGAGTGGTCATGA+AGG 0.569719 5.1:-3317048 None:intergenic
CCATCCATTTGAAAATTGGA+AGG 0.571739 5.1:-3316431 None:intergenic
CCTCGAACGCCACAATAACA+TGG 0.571844 5.1:-3317364 None:intergenic
AGCACTAAAGACTCGTTCAA+AGG 0.572987 5.1:-3316810 None:intergenic
GCGGAATTAGGACCTGTTGG+TGG 0.575797 5.1:+3318049 MS.gene024657:CDS
CTTGTTCTTGCAGTCACAAG+GGG 0.579341 5.1:+3315308 MS.gene024657:CDS
TGCGCGGAATTAGGACCTGT+TGG 0.580143 5.1:+3318046 MS.gene024657:CDS
GCTCGTATGGCCGAACACCC+TGG 0.581362 5.1:+3317728 MS.gene024657:CDS
GGTTCATCGTTTGTTCTACA+GGG 0.584720 5.1:+3316126 MS.gene024657:CDS
ATTCAGGGGCTGCAGTCATG+GGG 0.586038 5.1:+3316708 MS.gene024657:CDS
CGGGCAAACATTTCGAGCTG+TGG 0.586544 5.1:-3315198 None:intergenic
ACAATGCCATGAAGGTGAGC+CGG 0.586955 5.1:+3316458 MS.gene024657:CDS
AGCGTTTGCCGGTGCTCTTG+TGG 0.587306 5.1:+3316605 MS.gene024657:CDS
CATGAAAACCATAATAGCAA+AGG 0.589901 5.1:-3317012 None:intergenic
GAATTAATTGTCCTCAACAT+CGG 0.591363 5.1:+3316864 MS.gene024657:CDS
GAGGTCCTCATCGATACTAA+TGG 0.592793 5.1:+3317280 MS.gene024657:CDS
TCTTGTTCTTGCAGTCACAA+GGG 0.592967 5.1:+3315307 MS.gene024657:CDS
TTAGACGCAGGCTGCATCGG+CGG 0.594119 5.1:-3315221 None:intergenic
GTGATGCAACAGTATCACAA+TGG 0.594247 5.1:+3318115 MS.gene024657:CDS
AACAGGCAAGAATCCTCAGT+TGG 0.594260 5.1:-3317145 None:intergenic
TTAGATACTCTAGCAAACCT+TGG 0.598078 5.1:+3315982 MS.gene024657:CDS
TGAACCAATTCCTAGTGCAA+AGG 0.603458 5.1:-3316109 None:intergenic
ACAAATACAGAACAATTGAA+AGG 0.605182 5.1:+3317108 MS.gene024657:CDS
TTATATGCAGCTAACACAAG+AGG 0.606611 5.1:-3317062 None:intergenic
TTCCGGCAATAGCAATGGCA+AGG 0.606740 5.1:-3316077 None:intergenic
GCTTATTCCGGCAATAGCAA+TGG 0.606834 5.1:-3316082 None:intergenic
CTTGTGGGTCGAAGGCCGGA+CGG 0.607981 5.1:+3317992 MS.gene024657:CDS
AAACTTTGTCCCAGAAATGG+AGG 0.612453 5.1:+3318147 MS.gene024657:CDS
AACTTGATTGAGGCTTCAAG+AGG 0.612831 5.1:+3317200 MS.gene024657:CDS
CCAAAATAGATGCTGTTGTG+CGG 0.613020 5.1:-3318093 None:intergenic
GACAGGGAGGAATCCTACTT+GGG 0.614800 5.1:+3315893 MS.gene024657:intron
AATACTGGAAGACTCTTGGG+TGG 0.618474 5.1:-3315961 None:intergenic
AGATTCTGTCCATGTTATTG+TGG 0.620026 5.1:+3317355 MS.gene024657:CDS
AAACTTCTAACCACTAGTGT+CGG 0.620589 5.1:+3316252 MS.gene024657:CDS
ATGGCCCAACAATGCCATGA+AGG 0.621341 5.1:+3316450 MS.gene024657:CDS
TAACATGGACAGAATCTCCA+TGG 0.622510 5.1:-3317349 None:intergenic
GCAGAAATTAATCACGCGGA+TGG 0.623209 5.1:-3317960 None:intergenic
CACTTGACACAAAATAAAGT+GGG 0.625867 5.1:-3316662 None:intergenic
TTGTGCCATTAGTATCGATG+AGG 0.638116 5.1:-3317285 None:intergenic
AAAATGCAGACGGCCAACTG+AGG 0.641897 5.1:+3317132 MS.gene024657:CDS
AATGGAAGTGCATAATCAAG+AGG 0.642363 5.1:-3315266 None:intergenic
AGCCATTCTGCCGACACTAG+TGG 0.642910 5.1:-3316262 None:intergenic
AAATCTCTGCGGAAAACTGG+AGG 0.646572 5.1:+3316048 MS.gene024657:CDS
ATACTGGAAGACTCTTGGGT+GGG 0.647325 5.1:-3315960 None:intergenic
AAACCACTAATCTTATGCCA+GGG 0.648115 5.1:-3317745 None:intergenic
TCTTGAAAGAAGCGAGTGCG+CGG 0.650120 5.1:+3318030 MS.gene024657:CDS
ACATTCACCTGATGGAGACA+CGG 0.653891 5.1:+3318171 MS.gene024657:CDS
TGCAGCTAACACAAGAGGAG+TGG 0.658853 5.1:-3317057 None:intergenic
ACAATCTCTGCAATGACTCG+AGG 0.658940 5.1:-3315362 None:intergenic
CTACAGGGAACAATTGCCAA+AGG 0.662191 5.1:+3316141 MS.gene024657:CDS
ATGGAAGTGCATAATCAAGA+GGG 0.669234 5.1:-3315265 None:intergenic
ATAGAAAGAATATAAGACCA+AGG 0.670462 5.1:-3315999 None:intergenic
TGAAATACACCATTAGACGC+AGG 0.678423 5.1:-3315233 None:intergenic
CCCCATATATACAAGAAATG+CGG 0.682370 5.1:-3316175 None:intergenic
AGTTGCAGAAATTAATCACG+CGG 0.687377 5.1:-3317964 None:intergenic
TCATTGGTCGAACACACACG+TGG 0.711445 5.1:-3317403 None:intergenic
AGTTAGATCCTAAATCTCTG+CGG 0.716660 5.1:+3316037 MS.gene024657:CDS
CCAACATAGCTACCATTCAG+GGG 0.726005 5.1:+3316694 MS.gene024657:CDS
AAATGGAAGAATGATGACAG+CGG 0.728068 5.1:-3317489 None:intergenic
GATGCAACAGTATCACAATG+GGG 0.828892 5.1:+3318117 MS.gene024657:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCTATAATTAATTTAAAA+TGG + chr5.1:3316931-3316950 MS.gene024657:intron 10.0%
!! ACTGTGAAATTATATAAAAA+TGG - chr5.1:3315543-3315562 None:intergenic 15.0%
!! TTTATATATTAGAAACTAGT+GGG + chr5.1:3315477-3315496 MS.gene024657:intron 15.0%
!!! CACCATTTTAAATTAATTAT+AGG - chr5.1:3316936-3316955 None:intergenic 15.0%
!!! TTTTATATATTAGAAACTAG+TGG + chr5.1:3315476-3315495 MS.gene024657:intron 15.0%
!! TTATATATTAGAAACTAGTG+GGG + chr5.1:3315478-3315497 MS.gene024657:intron 20.0%
!!! ATATTCTTTCTATTTTTAGC+AGG + chr5.1:3316009-3316028 MS.gene024657:CDS 20.0%
! AACTTCATTAAATCCACATT+TGG + chr5.1:3315784-3315803 MS.gene024657:intron 25.0%
! AATGATAGCAATTTCATCAA+TGG + chr5.1:3317421-3317440 MS.gene024657:CDS 25.0%
! ACAAATACAGAACAATTGAA+AGG + chr5.1:3317108-3317127 MS.gene024657:CDS 25.0%
! ATAGAAAGAATATAAGACCA+AGG - chr5.1:3316002-3316021 None:intergenic 25.0%
! ATATAAAAATGGAACAGTCA+AGG - chr5.1:3315532-3315551 None:intergenic 25.0%
! ATTGATGAAATTGCTATCAT+TGG - chr5.1:3317422-3317441 None:intergenic 25.0%
! TTATTGGAACCTAATATTGT+AGG + chr5.1:3317776-3317795 MS.gene024657:CDS 25.0%
!! GGATTTTTGATGAATAGTAA+AGG + chr5.1:3316834-3316853 MS.gene024657:CDS 25.0%
!! TATAAGAAACGATTTTCGAT+TGG + chr5.1:3317547-3317566 MS.gene024657:CDS 25.0%
!! TTAGAACTTGTTTCATAGTT+TGG - chr5.1:3315593-3315612 None:intergenic 25.0%
!!! ATTTTCGATTGGTTAACAAA+AGG + chr5.1:3317558-3317577 MS.gene024657:CDS 25.0%
!!! TCTAGTTTTCGTTACATTTA+CGG + chr5.1:3316734-3316753 MS.gene024657:CDS 25.0%
!!! TTTTCGATTGGTTAACAAAA+GGG + chr5.1:3317559-3317578 MS.gene024657:CDS 25.0%
AAAATAGAGGATCTTGTATC+TGG + chr5.1:3316630-3316649 MS.gene024657:CDS 30.0%
AATAAACTTTGTCCCAGAAA+TGG + chr5.1:3318144-3318163 MS.gene024657:CDS 30.0%
ACCTCTCACAAAATTCTTTA+AGG - chr5.1:3317265-3317284 None:intergenic 30.0%
ATAGATAATTGAGTCATCAC+TGG - chr5.1:3317900-3317919 None:intergenic 30.0%
ATCGATGATAAACTTGATTG+AGG + chr5.1:3317190-3317209 MS.gene024657:CDS 30.0%
ATTGAAAGGAAAAATGCAGA+CGG + chr5.1:3317122-3317141 MS.gene024657:CDS 30.0%
CAAATATACATCACGATGAT+CGG - chr5.1:3316960-3316979 None:intergenic 30.0%
CACAAAAGGTAAGACAAAAT+GGG + chr5.1:3317303-3317322 MS.gene024657:CDS 30.0%
CACTTGACACAAAATAAAGT+GGG - chr5.1:3316665-3316684 None:intergenic 30.0%
CATATCTGTAAAATAGCCAA+TGG - chr5.1:3315287-3315306 None:intergenic 30.0%
CATATGTATAACTCATCAAC+CGG - chr5.1:3316480-3316499 None:intergenic 30.0%
CATGAAAACCATAATAGCAA+AGG - chr5.1:3317015-3317034 None:intergenic 30.0%
GAATTAATTGTCCTCAACAT+CGG + chr5.1:3316864-3316883 MS.gene024657:CDS 30.0%
TCAATCAAGTTTATCATCGA+TGG - chr5.1:3317191-3317210 None:intergenic 30.0%
TCCGCATTTCTTGTATATAT+GGG + chr5.1:3316174-3316193 MS.gene024657:CDS 30.0%
TTCCATTTCATAAGCAACAA+AGG + chr5.1:3317504-3317523 MS.gene024657:CDS 30.0%
TTCCGCATTTCTTGTATATA+TGG + chr5.1:3316173-3316192 MS.gene024657:CDS 30.0%
TTTGATGAATAGTAAAGGCT+TGG + chr5.1:3316839-3316858 MS.gene024657:CDS 30.0%
! AACCTTTGTTGCTTATGAAA+TGG - chr5.1:3317509-3317528 None:intergenic 30.0%
! ACCTTAAAGAATTTTGTGAG+AGG + chr5.1:3317261-3317280 MS.gene024657:CDS 30.0%
! TATTTGATTTACGTATCTGC+AGG + chr5.1:3316974-3316993 MS.gene024657:intron 30.0%
! TCTTAAACATGTGCACATTT+TGG - chr5.1:3315713-3315732 None:intergenic 30.0%
! TTCTGCAACTTATTTCTTGT+GGG + chr5.1:3317977-3317996 MS.gene024657:CDS 30.0%
! TTGTCCTTCCAATTTTCAAA+TGG + chr5.1:3316427-3316446 MS.gene024657:CDS 30.0%
! TTTCTGCAACTTATTTCTTG+TGG + chr5.1:3317976-3317995 MS.gene024657:CDS 30.0%
! TTTGCTAGAGTATCTAATAC+TGG - chr5.1:3315979-3315998 None:intergenic 30.0%
!! ATTGCTTATTGATGATGACA+GGG + chr5.1:3315877-3315896 MS.gene024657:intron 30.0%
!! ATTTCTGGGACAAAGTTTAT+TGG - chr5.1:3318145-3318164 None:intergenic 30.0%
!! CCTATCTTCTAAAACCTTTA+AGG + chr5.1:3315336-3315355 MS.gene024657:CDS 30.0%
!! TTACATTTACGGCTTGTTTT+GGG + chr5.1:3316745-3316764 MS.gene024657:CDS 30.0%
!!! AGTGGTTAGAAGTTTTAACT+CGG - chr5.1:3316247-3316266 None:intergenic 30.0%
!!! CCTTAAAGGTTTTAGAAGAT+AGG - chr5.1:3315339-3315358 None:intergenic 30.0%
!!! CTTTGCTATTATGGTTTTCA+TGG + chr5.1:3317013-3317032 MS.gene024657:CDS 30.0%
AAAACCACTAATCTTATGCC+AGG - chr5.1:3317749-3317768 None:intergenic 35.0%
AAACCACTAATCTTATGCCA+GGG - chr5.1:3317748-3317767 None:intergenic 35.0%
AAACTTCTAACCACTAGTGT+CGG + chr5.1:3316252-3316271 MS.gene024657:CDS 35.0%
AAATGGAAGAATGATGACAG+CGG - chr5.1:3317492-3317511 None:intergenic 35.0%
ACAAAAATTCCAACTGAGCA+TGG - chr5.1:3317599-3317618 None:intergenic 35.0%
ACAATGACACAAATGGAGAT+TGG - chr5.1:3316362-3316381 None:intergenic 35.0%
AGATTCTGTCCATGTTATTG+TGG + chr5.1:3317355-3317374 MS.gene024657:CDS 35.0%
AGTTAGATCCTAAATCTCTG+CGG + chr5.1:3316037-3316056 MS.gene024657:CDS 35.0%
AGTTGCAGAAATTAATCACG+CGG - chr5.1:3317967-3317986 None:intergenic 35.0%
ATCGATACTAATGGCACAAA+AGG + chr5.1:3317289-3317308 MS.gene024657:CDS 35.0%
ATCTAATACTGGAAGACTCT+TGG - chr5.1:3315968-3315987 None:intergenic 35.0%
ATGGAATATTCCTTGAACCA+TGG - chr5.1:3317172-3317191 None:intergenic 35.0%
CAACATCGGTAAAGATAGAA+AGG + chr5.1:3316878-3316897 MS.gene024657:CDS 35.0%
CCACTTGACACAAAATAAAG+TGG - chr5.1:3316666-3316685 None:intergenic 35.0%
CCATCCATTTGAAAATTGGA+AGG - chr5.1:3316434-3316453 None:intergenic 35.0%
CCCCATATATACAAGAAATG+CGG - chr5.1:3316178-3316197 None:intergenic 35.0%
CCGCATTTCTTGTATATATG+GGG + chr5.1:3316175-3316194 MS.gene024657:CDS 35.0%
CGCATTTCTTGTATATATGG+GGG + chr5.1:3316176-3316195 MS.gene024657:CDS 35.0%
GCACAAAAGGTAAGACAAAA+TGG + chr5.1:3317302-3317321 MS.gene024657:CDS 35.0%
GTGATCTGTCCTACAATATT+AGG - chr5.1:3317788-3317807 None:intergenic 35.0%
TCTAATACTGGAAGACTCTT+GGG - chr5.1:3315967-3315986 None:intergenic 35.0%
TCTTGATTATGCACTTCCAT+TGG + chr5.1:3315268-3315287 MS.gene024657:CDS 35.0%
TGAAAATTGGAAGGACAATG+AGG - chr5.1:3316425-3316444 None:intergenic 35.0%
TGATGCAACAGTATCACAAT+GGG + chr5.1:3318116-3318135 MS.gene024657:CDS 35.0%
TTAGAAACTAGTGGGGAAAT+TGG + chr5.1:3315485-3315504 MS.gene024657:intron 35.0%
TTAGATACTCTAGCAAACCT+TGG + chr5.1:3315982-3316001 MS.gene024657:CDS 35.0%
TTAGTAAGACTGACCAAATG+TGG - chr5.1:3315800-3315819 None:intergenic 35.0%
TTATATGCAGCTAACACAAG+AGG - chr5.1:3317065-3317084 None:intergenic 35.0%
TTCTATCTTTACCGATGTTG+AGG - chr5.1:3316878-3316897 None:intergenic 35.0%
TTGTGTTAGCTGCATATAAG+AGG + chr5.1:3317066-3317085 MS.gene024657:CDS 35.0%
! AATCTCCATTTGTGTCATTG+TGG + chr5.1:3316361-3316380 MS.gene024657:CDS 35.0%
! AATGGAAGTGCATAATCAAG+AGG - chr5.1:3315269-3315288 None:intergenic 35.0%
! AGTGGTTTTTCGCTTCTTAT+TGG + chr5.1:3317760-3317779 MS.gene024657:CDS 35.0%
! ATCTCCATTTGTGTCATTGT+GGG + chr5.1:3316362-3316381 MS.gene024657:CDS 35.0%
! ATGGAAGTGCATAATCAAGA+GGG - chr5.1:3315268-3315287 None:intergenic 35.0%
! ATTGTTGTGCTTTTCTTTGG+TGG + chr5.1:3317674-3317693 MS.gene024657:CDS 35.0%
! CCTTCCAATTTTCAAATGGA+TGG + chr5.1:3316431-3316450 MS.gene024657:CDS 35.0%
! GAAAAGCACAACAATGCAAT+AGG - chr5.1:3317669-3317688 None:intergenic 35.0%
! GTTGGAATTTTTGTTGATCG+CGG + chr5.1:3317605-3317624 MS.gene024657:CDS 35.0%
! TGCATTGTTGTGCTTTTCTT+TGG + chr5.1:3317671-3317690 MS.gene024657:CDS 35.0%
! TTGGAATTTTTGTTGATCGC+GGG + chr5.1:3317606-3317625 MS.gene024657:CDS 35.0%
!! AACCTCTGCTCTATTTTAGA+AGG - chr5.1:3315826-3315845 None:intergenic 35.0%
!! GATTGCTTATTGATGATGAC+AGG + chr5.1:3315876-3315895 MS.gene024657:intron 35.0%
!! GTTACATTTACGGCTTGTTT+TGG + chr5.1:3316744-3316763 MS.gene024657:CDS 35.0%
!! TGATCAGACCTTTGCTATTA+TGG + chr5.1:3317004-3317023 MS.gene024657:CDS 35.0%
!! TTTTAACTCGGCCAAAATAC+GGG - chr5.1:3316235-3316254 None:intergenic 35.0%
!!! CCACTTTATTTTGTGTCAAG+TGG + chr5.1:3316663-3316682 MS.gene024657:CDS 35.0%
!!! CGCGTTTGTTTTTGGAATTT+TGG + chr5.1:3316569-3316588 MS.gene024657:CDS 35.0%
!!! CTTGTTTTGGGAAGATTGTT+GGG + chr5.1:3316757-3316776 MS.gene024657:CDS 35.0%
!!! GGAATTTTGGTTCCAAAAGA+TGG + chr5.1:3316582-3316601 MS.gene024657:CDS 35.0%
!!! GTTTTAACTCGGCCAAAATA+CGG - chr5.1:3316236-3316255 None:intergenic 35.0%
AAAAACAAACGCGCCAAACA+TGG - chr5.1:3316562-3316581 None:intergenic 40.0%
AAACTTTGTCCCAGAAATGG+AGG + chr5.1:3318147-3318166 MS.gene024657:CDS 40.0%
AACATTTCGAGCTGTGGTAT+TGG - chr5.1:3315195-3315214 None:intergenic 40.0%
AACTTGATTGAGGCTTCAAG+AGG + chr5.1:3317200-3317219 MS.gene024657:CDS 40.0%
AAGACCCACAATGACACAAA+TGG - chr5.1:3316369-3316388 None:intergenic 40.0%
ACCAACATAGCTACCATTCA+GGG + chr5.1:3316693-3316712 MS.gene024657:CDS 40.0%
AGAGTCTCCAACATCAACTT+TGG - chr5.1:3317810-3317829 None:intergenic 40.0%
AGCACTAAAGACTCGTTCAA+AGG - chr5.1:3316813-3316832 None:intergenic 40.0%
ATAAGCTTACCCTTTGCACT+AGG + chr5.1:3316099-3316118 MS.gene024657:CDS 40.0%
ATCGGAATTCATGCCATGTT+TGG + chr5.1:3316546-3316565 MS.gene024657:CDS 40.0%
ATTCCTTGAACCATGGAAAC+AGG - chr5.1:3317165-3317184 None:intergenic 40.0%
CATTGTGGGTCTTCTTAAGT+GGG + chr5.1:3316376-3316395 MS.gene024657:CDS 40.0%
CCAAAATAGATGCTGTTGTG+CGG - chr5.1:3318096-3318115 None:intergenic 40.0%
GAACCAATTCCTAGTGCAAA+GGG - chr5.1:3316111-3316130 None:intergenic 40.0%
GATGCAACAGTATCACAATG+GGG + chr5.1:3318117-3318136 MS.gene024657:CDS 40.0%
GCAGAGAGTTTAAACACACT+TGG + chr5.1:3315761-3315780 MS.gene024657:intron 40.0%
GCGTCTAATGGTGTATTTCA+AGG + chr5.1:3315236-3315255 MS.gene024657:CDS 40.0%
GGTTCATCGTTTGTTCTACA+GGG + chr5.1:3316126-3316145 MS.gene024657:CDS 40.0%
GTGAATGTTCCTCCATTTCT+GGG - chr5.1:3318159-3318178 None:intergenic 40.0%
GTGATGCAACAGTATCACAA+TGG + chr5.1:3318115-3318134 MS.gene024657:CDS 40.0%
TAACATGGACAGAATCTCCA+TGG - chr5.1:3317352-3317371 None:intergenic 40.0%
TCATTGTGGGTCTTCTTAAG+TGG + chr5.1:3316375-3316394 MS.gene024657:CDS 40.0%
TCTTGTTCTTGCAGTCACAA+GGG + chr5.1:3315307-3315326 MS.gene024657:CDS 40.0%
TGAAATACACCATTAGACGC+AGG - chr5.1:3315236-3315255 None:intergenic 40.0%
TGAACCAATTCCTAGTGCAA+AGG - chr5.1:3316112-3316131 None:intergenic 40.0%
TGCAAAGGGTAAGCTTATTC+CGG - chr5.1:3316097-3316116 None:intergenic 40.0%
TGCTCTTGTGGAGAAAATAG+AGG + chr5.1:3316617-3316636 MS.gene024657:CDS 40.0%
TGGGCCATCCATTTGAAAAT+TGG - chr5.1:3316438-3316457 None:intergenic 40.0%
TGGTGACCTTTATCCCAAAA+CGG - chr5.1:3317332-3317351 None:intergenic 40.0%
TGGTTCATCGTTTGTTCTAC+AGG + chr5.1:3316125-3316144 MS.gene024657:CDS 40.0%
TTACCCTTTGCACTAGGAAT+TGG + chr5.1:3316105-3316124 MS.gene024657:CDS 40.0%
TTGAACGAGTCTTTAGTGCT+TGG + chr5.1:3316813-3316832 MS.gene024657:CDS 40.0%
! ACTTATTTCTTGTGGGTCGA+AGG + chr5.1:3317984-3318003 MS.gene024657:CDS 40.0%
! AGATTGGCTATTGCCTGATA+AGG - chr5.1:3316346-3316365 None:intergenic 40.0%
! TAATCTTATGCCAGGGTGTT+CGG - chr5.1:3317741-3317760 None:intergenic 40.0%
! TCCTGTATTAGCCCGTATTT+TGG + chr5.1:3316221-3316240 MS.gene024657:CDS 40.0%
!! ATGTTTGGCGCGTTTGTTTT+TGG + chr5.1:3316561-3316580 MS.gene024657:CDS 40.0%
!! CAGATCACCAAAGTTGATGT+TGG + chr5.1:3317800-3317819 MS.gene024657:CDS 40.0%
!! TATTTTCTCCACAAGAGCAC+CGG - chr5.1:3316616-3316635 None:intergenic 40.0%
!! TGCCTTCTAAAATAGAGCAG+AGG + chr5.1:3315821-3315840 MS.gene024657:intron 40.0%
!! TGCGGAAGTATTTACACCTT+TGG - chr5.1:3316160-3316179 None:intergenic 40.0%
!! TTGTGCCATTAGTATCGATG+AGG - chr5.1:3317288-3317307 None:intergenic 40.0%
!!! ACAAAATGGGTTGCCGTTTT+GGG + chr5.1:3317316-3317335 MS.gene024657:CDS 40.0%
!!! GCTTGTTTTGGGAAGATTGT+TGG + chr5.1:3316756-3316775 MS.gene024657:CDS 40.0%
!!! TTTTGGGATAAAGGTCACCA+TGG + chr5.1:3317332-3317351 MS.gene024657:CDS 40.0%
AAATCTCTGCGGAAAACTGG+AGG + chr5.1:3316048-3316067 MS.gene024657:CDS 45.0%
AACAGGCAAGAATCCTCAGT+TGG - chr5.1:3317148-3317167 None:intergenic 45.0%
AATACTGGAAGACTCTTGGG+TGG - chr5.1:3315964-3315983 None:intergenic 45.0%
ACAATCTCTGCAATGACTCG+AGG - chr5.1:3315365-3315384 None:intergenic 45.0%
ACACCCTGGCATAAGATTAG+TGG + chr5.1:3317742-3317761 MS.gene024657:CDS 45.0%
ACATTCACCTGATGGAGACA+CGG + chr5.1:3318171-3318190 MS.gene024657:CDS 45.0%
AGCAAGAGCAAGAAGAATCC+AGG - chr5.1:3316319-3316338 None:intergenic 45.0%
AGGATTCTTGCCTGTTTCCA+TGG + chr5.1:3317152-3317171 MS.gene024657:CDS 45.0%
ATACTGGAAGACTCTTGGGT+GGG - chr5.1:3315963-3315982 None:intergenic 45.0%
ATGACTCGAGGTTGCCTTAA+AGG - chr5.1:3315353-3315372 None:intergenic 45.0%
ATGGAGGAACATTCACCTGA+TGG + chr5.1:3318163-3318182 MS.gene024657:CDS 45.0%
CAGTTAATGATGTAGCAGCC+TGG + chr5.1:3316298-3316317 MS.gene024657:CDS 45.0%
CCAACATAGCTACCATTCAG+GGG + chr5.1:3316694-3316713 MS.gene024657:CDS 45.0%
CCTAAATCTCTGCGGAAAAC+TGG + chr5.1:3316045-3316064 MS.gene024657:CDS 45.0%
CTACAGGGAACAATTGCCAA+AGG + chr5.1:3316141-3316160 MS.gene024657:CDS 45.0%
CTCACCTTCATGGCATTGTT+GGG - chr5.1:3316457-3316476 None:intergenic 45.0%
CTCCATAAGCAAGAGCTTCA+CGG - chr5.1:3317709-3317728 None:intergenic 45.0%
CTCGCTTCTTTCAAGAGCAA+AGG - chr5.1:3318026-3318045 None:intergenic 45.0%
CTTGTTCTTGCAGTCACAAG+GGG + chr5.1:3315308-3315327 MS.gene024657:CDS 45.0%
GACCAACATAGCTACCATTC+AGG + chr5.1:3316692-3316711 MS.gene024657:CDS 45.0%
GAGGTCCTCATCGATACTAA+TGG + chr5.1:3317280-3317299 MS.gene024657:CDS 45.0%
GCAGAAATTAATCACGCGGA+TGG - chr5.1:3317963-3317982 None:intergenic 45.0%
GCTTATTCCGGCAATAGCAA+TGG - chr5.1:3316085-3316104 None:intergenic 45.0%
GGTGAATGTTCCTCCATTTC+TGG - chr5.1:3318160-3318179 None:intergenic 45.0%
TCTTGCTTATGGAGCTCGTA+TGG + chr5.1:3317715-3317734 MS.gene024657:CDS 45.0%
TGCTACATTAGCTGCTGTTC+TGG + chr5.1:3316500-3316519 MS.gene024657:CDS 45.0%
TTGCCTGTTTCCATGGTTCA+AGG + chr5.1:3317159-3317178 MS.gene024657:CDS 45.0%
! ATTTTTGTTGATCGCGGGCT+TGG + chr5.1:3317611-3317630 MS.gene024657:CDS 45.0%
! CCAGTTTTCCGCAGAGATTT+AGG - chr5.1:3316048-3316067 None:intergenic 45.0%
! CCGCACAACAGCATCTATTT+TGG + chr5.1:3318093-3318112 MS.gene024657:CDS 45.0%
! GCCAAAATACGGGCTAATAC+AGG - chr5.1:3316225-3316244 None:intergenic 45.0%
! GTCTTGTTCTTGCAGTCACA+AGG + chr5.1:3315306-3315325 MS.gene024657:CDS 45.0%
! GTTGTGCTTTTCTTTGGTGG+TGG + chr5.1:3317677-3317696 MS.gene024657:CDS 45.0%
!! CACACACGTGGCTTAGTTTT+TGG - chr5.1:3317394-3317413 None:intergenic 45.0%
!! GCTTATTGATGATGACAGGG+AGG + chr5.1:3315880-3315899 MS.gene024657:intron 45.0%
!!! GACAAAATGGGTTGCCGTTT+TGG + chr5.1:3317315-3317334 MS.gene024657:CDS 45.0%
AAAATGCAGACGGCCAACTG+AGG + chr5.1:3317132-3317151 MS.gene024657:CDS 50.0%
ACAATGCCATGAAGGTGAGC+CGG + chr5.1:3316458-3316477 MS.gene024657:CDS 50.0%
ATGGCCCAACAATGCCATGA+AGG + chr5.1:3316450-3316469 MS.gene024657:CDS 50.0%
ATTTCTTGTGGGTCGAAGGC+CGG + chr5.1:3317988-3318007 MS.gene024657:CDS 50.0%
CACAAGAGGAGTGGTCATGA+AGG - chr5.1:3317051-3317070 None:intergenic 50.0%
CCATGTTATTGTGGCGTTCG+AGG + chr5.1:3317364-3317383 MS.gene024657:CDS 50.0%
CCCCTGAATGGTAGCTATGT+TGG - chr5.1:3316697-3316716 None:intergenic 50.0%
CCTCGAACGCCACAATAACA+TGG - chr5.1:3317367-3317386 None:intergenic 50.0%
GAAGATTCCGTGTCTCCATC+AGG - chr5.1:3318181-3318200 None:intergenic 50.0%
GACAGGGAGGAATCCTACTT+GGG + chr5.1:3315893-3315912 MS.gene024657:intron 50.0%
GACCGTGAAGCTCTTGCTTA+TGG + chr5.1:3317704-3317723 MS.gene024657:CDS 50.0%
GCTCACCTTCATGGCATTGT+TGG - chr5.1:3316458-3316477 None:intergenic 50.0%
GGGTTTGTCACGGATGCTAT+CGG + chr5.1:3316528-3316547 MS.gene024657:CDS 50.0%
TCATTGGTCGAACACACACG+TGG - chr5.1:3317406-3317425 None:intergenic 50.0%
TCTTGAAAGAAGCGAGTGCG+CGG + chr5.1:3318030-3318049 MS.gene024657:CDS 50.0%
TGACAGGGAGGAATCCTACT+TGG + chr5.1:3315892-3315911 MS.gene024657:intron 50.0%
TGCAGCTAACACAAGAGGAG+TGG - chr5.1:3317060-3317079 None:intergenic 50.0%
TGGGTCTTCTTAAGTGGGTG+TGG + chr5.1:3316381-3316400 MS.gene024657:CDS 50.0%
TTCCGGCAATAGCAATGGCA+AGG - chr5.1:3316080-3316099 None:intergenic 50.0%
! CCAAAAGATGGAGCGTTTGC+CGG + chr5.1:3316594-3316613 MS.gene024657:CDS 50.0%
! GTCCTTGCCATTGCTATTGC+CGG + chr5.1:3316075-3316094 MS.gene024657:CDS 50.0%
!! AACCACTAGTGTCGGCAGAA+TGG + chr5.1:3316260-3316279 MS.gene024657:CDS 50.0%
!! GCTCTTGCTGTTGCCTTATC+AGG + chr5.1:3316330-3316349 MS.gene024657:CDS 50.0%
!! TTATTCCGTCCAAGCGCTGA+CGG - chr5.1:3315919-3315938 None:intergenic 50.0%
!!! GGGTTGCCGTTTTGGGATAA+AGG + chr5.1:3317323-3317342 MS.gene024657:CDS 50.0%
AGAAGCGAGTGCGCGGAATT+AGG + chr5.1:3318037-3318056 MS.gene024657:CDS 55.0%
AGCCATTCTGCCGACACTAG+TGG - chr5.1:3316265-3316284 None:intergenic 55.0%
ATTCAGGGGCTGCAGTCATG+GGG + chr5.1:3316708-3316727 MS.gene024657:CDS 55.0%
CATTCAGGGGCTGCAGTCAT+GGG + chr5.1:3316707-3316726 MS.gene024657:CDS 55.0%
CCATTAGACGCAGGCTGCAT+CGG - chr5.1:3315227-3315246 None:intergenic 55.0%
CGGGCAAACATTTCGAGCTG+TGG - chr5.1:3315201-3315220 None:intergenic 55.0%
GAGCATGCACCATGCTCAGT+TGG + chr5.1:3317587-3317606 MS.gene024657:CDS 55.0%
GATGCCAACAAGCCACCAAC+AGG - chr5.1:3318064-3318083 None:intergenic 55.0%
GCAAAGGCCAATTCACCGTC+CGG - chr5.1:3318010-3318029 None:intergenic 55.0%
GCGGAATTAGGACCTGTTGG+TGG + chr5.1:3318049-3318068 MS.gene024657:CDS 55.0%
TCTGGCTGCTGGGTTTGTCA+CGG + chr5.1:3316518-3316537 MS.gene024657:CDS 55.0%
TCTTGCAGTCACAAGGGGAC+TGG + chr5.1:3315313-3315332 MS.gene024657:CDS 55.0%
TGCGCGGAATTAGGACCTGT+TGG + chr5.1:3318046-3318065 MS.gene024657:CDS 55.0%
TTTGTTGATCGCGGGCTTGG+TGG + chr5.1:3317614-3317633 MS.gene024657:CDS 55.0%
! CATCAACCGGCTCACCTTCA+TGG - chr5.1:3316467-3316486 None:intergenic 55.0%
! CCGGCAAACGCTCCATCTTT+TGG - chr5.1:3316597-3316616 None:intergenic 55.0%
! TAGCTGCTGTTCTGGCTGCT+GGG + chr5.1:3316508-3316527 MS.gene024657:CDS 55.0%
! TTAGCTGCTGTTCTGGCTGC+TGG + chr5.1:3316507-3316526 MS.gene024657:CDS 55.0%
!! AGGACCTGTTGGTGGCTTGT+TGG + chr5.1:3318057-3318076 MS.gene024657:CDS 55.0%
AGCGTTTGCCGGTGCTCTTG+TGG + chr5.1:3316605-3316624 MS.gene024657:CDS 60.0%
CCATGACTGCAGCCCCTGAA+TGG - chr5.1:3316709-3316728 None:intergenic 60.0%
CCATTCAGGGGCTGCAGTCA+TGG + chr5.1:3316706-3316725 MS.gene024657:CDS 60.0%
CCGATGCAGCCTGCGTCTAA+TGG + chr5.1:3315224-3315243 MS.gene024657:CDS 60.0%
TCGAAGGCCGGACGGTGAAT+TGG + chr5.1:3318000-3318019 MS.gene024657:CDS 60.0%
TTAGACGCAGGCTGCATCGG+CGG - chr5.1:3315224-3315243 None:intergenic 60.0%
CTACTTGGGCCGTCAGCGCT+TGG + chr5.1:3315907-3315926 MS.gene024657:CDS 65.0%
CTTGTGGGTCGAAGGCCGGA+CGG + chr5.1:3317992-3318011 MS.gene024657:CDS 65.0%
GCTCGTATGGCCGAACACCC+TGG + chr5.1:3317728-3317747 MS.gene024657:CDS 65.0%
TTGGGCCGTCAGCGCTTGGA+CGG + chr5.1:3315911-3315930 MS.gene024657:CDS 65.0%
!! CAAGCGCTGACGGCCCAAGT+AGG - chr5.1:3315909-3315928 None:intergenic 65.0%
! ACGCAGGCTGCATCGGCGGC+GGG - chr5.1:3315220-3315239 None:intergenic 75.0%
! GACGCAGGCTGCATCGGCGG+CGG - chr5.1:3315221-3315240 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 3315185 3318204 3315185 ID=MS.gene024657
chr5.1 mRNA 3315185 3318204 3315185 ID=MS.gene024657.t1;Parent=MS.gene024657
chr5.1 exon 3315185 3315385 3315185 ID=MS.gene024657.t1.exon1;Parent=MS.gene024657.t1
chr5.1 CDS 3315185 3315385 3315185 ID=cds.MS.gene024657.t1;Parent=MS.gene024657.t1
chr5.1 exon 3315898 3316899 3315898 ID=MS.gene024657.t1.exon2;Parent=MS.gene024657.t1
chr5.1 CDS 3315898 3316899 3315898 ID=cds.MS.gene024657.t1;Parent=MS.gene024657.t1
chr5.1 exon 3316996 3318204 3316996 ID=MS.gene024657.t1.exon3;Parent=MS.gene024657.t1
chr5.1 CDS 3316996 3318204 3316996 ID=cds.MS.gene024657.t1;Parent=MS.gene024657.t1
Gene Sequence

>MS.gene024657

ATGACTTCCAATACCACAGCTCGAAATGTTTGCCCGCCGCCGATGCAGCCTGCGTCTAATGGTGTATTTCAAGGAGATCACCCTCTTGATTATGCACTTCCATTGGCTATTTTACAGATATGTCTTGTTCTTGCAGTCACAAGGGGACTGGCCTATCTTCTAAAACCTTTAAGGCAACCTCGAGTCATTGCAGAGATTGTTGTAAGTTCTTTTATTTTTGTTTAAGTATTTACTTAATTTAATGATTTTTTTTTTTGTTAACTGATATTAATAATTGATATTAGTAAAGAATTTTATATATTAGAAACTAGTGGGGAAATTGGCAAACAATGCAACAATAAGAGCCTTGACTGTTCCATTTTTATATAATTTCACAGTTTTGAGTTTCAACTACGTTCTACTTGTCCAAACTATGAAACAAGTTCTAATATTTAGTCAATTTTTTATGTAGAGATTAGAATGCAATATGACTATAAAAAATTCACTGTTCTTAAATCAACAATAGATGTTAGAGAAATAGACATGCCAAAATGTGCACATGTTTAAGAGAAATTAAAATTGAATCATATTAAAATCGCAGAGAGTTTAAACACACTTGGAACTTCATTAAATCCACATTTGGTCAGTCTTACTAATTGCCTTCTAAAATAGAGCAGAGGTTTTTTCAACTTCTATTTTTGTGTGTTAATTAGATTGCTTATTGATGATGACAGGGAGGAATCCTACTTGGGCCGTCAGCGCTTGGACGGAATAAAAGCTATCTACATGCAGTTTTCCCACCCAAGAGTCTTCCAGTATTAGATACTCTAGCAAACCTTGGTCTTATATTCTTTCTATTTTTAGCAGGCATAGAGTTAGATCCTAAATCTCTGCGGAAAACTGGAGGTAGAGTCCTTGCCATTGCTATTGCCGGAATAAGCTTACCCTTTGCACTAGGAATTGGTTCATCGTTTGTTCTACAGGGAACAATTGCCAAAGGTGTAAATACTTCCGCATTTCTTGTATATATGGGGGTCGCTCTGTCTATAACTGCTTTTCCTGTATTAGCCCGTATTTTGGCCGAGTTAAAACTTCTAACCACTAGTGTCGGCAGAATGGCTATGTCAGCTGCAGCAGTTAATGATGTAGCAGCCTGGATTCTTCTTGCTCTTGCTGTTGCCTTATCAGGCAATAGCCAATCTCCATTTGTGTCATTGTGGGTCTTCTTAAGTGGGTGTGGTTTTGTTGTATGTTCAATCCTCATTGTCCTTCCAATTTTCAAATGGATGGCCCAACAATGCCATGAAGGTGAGCCGGTTGATGAGTTATACATATGTGCTACATTAGCTGCTGTTCTGGCTGCTGGGTTTGTCACGGATGCTATCGGAATTCATGCCATGTTTGGCGCGTTTGTTTTTGGAATTTTGGTTCCAAAAGATGGAGCGTTTGCCGGTGCTCTTGTGGAGAAAATAGAGGATCTTGTATCTGGTCTATTACTCCCACTTTATTTTGTGTCAAGTGGATTGAAGACCAACATAGCTACCATTCAGGGGCTGCAGTCATGGGGTCTTCTAGTTTTCGTTACATTTACGGCTTGTTTTGGGAAGATTGTTGGGACTATTGTAGTGTCTCTTCTATGTAAAGTACCTTTGAACGAGTCTTTAGTGCTTGGATTTTTGATGAATAGTAAAGGCTTGGTTGAATTAATTGTCCTCAACATCGGTAAAGATAGAAAGGTATTCAAATTTATTTTCTTGCTCGTCATTATTCCTATAATTAATTTAAAATGGTGACCGATCATCGTGATGTATATTTGATTTACGTATCTGCAGGTTTTGAATGATCAGACCTTTGCTATTATGGTTTTCATGGCTCTCATTACTACCTTCATGACCACTCCTCTTGTGTTAGCTGCATATAAGAGGAAAGAAAGAAAATCTAATTACAAATACAGAACAATTGAAAGGAAAAATGCAGACGGCCAACTGAGGATTCTTGCCTGTTTCCATGGTTCAAGGAATATTCCATCGATGATAAACTTGATTGAGGCTTCAAGAGGAATCAAGAAGCATGACACACTTTGTGTCTATGCAATGCACCTTAAAGAATTTTGTGAGAGGTCCTCATCGATACTAATGGCACAAAAGGTAAGACAAAATGGGTTGCCGTTTTGGGATAAAGGTCACCATGGAGATTCTGTCCATGTTATTGTGGCGTTCGAGGCTTACCAAAAACTAAGCCACGTGTGTGTTCGACCAATGATAGCAATTTCATCAATGGCGAATATTCATGAAGACATTTGTGCAACTGCTGATAGAAAGAGAGCCGCTGTCATCATTCTTCCATTTCATAAGCAACAAAGGTTAGACAGTTCACTAGACATTATAAGAAACGATTTTCGATTGGTTAACAAAAGGGTACTCGAGCATGCACCATGCTCAGTTGGAATTTTTGTTGATCGCGGGCTTGGTGGTTCATGTCATGTGTCTGCAAGTAATGTTTCCTATTGCATTGTTGTGCTTTTCTTTGGTGGTGGTGATGACCGTGAAGCTCTTGCTTATGGAGCTCGTATGGCCGAACACCCTGGCATAAGATTAGTGGTTTTTCGCTTCTTATTGGAACCTAATATTGTAGGACAGATCACCAAAGTTGATGTTGGAGACTCTTCTAGCAGTAATTCAGTATCAGATTCTGAAGATGACGAGTTTCTTGCTGAATTTAAGCTAAAAACAGCCAGTGATGACTCAATTATCTATGAAGAAAAAATAGTAAAAGATGCTGCAGAAACAGTTGCTACCATCCGCGTGATTAATTTCTGCAACTTATTTCTTGTGGGTCGAAGGCCGGACGGTGAATTGGCCTTTGCTCTTGAAAGAAGCGAGTGCGCGGAATTAGGACCTGTTGGTGGCTTGTTGGCATCACAAGATTTCCGCACAACAGCATCTATTTTGGTGATGCAACAGTATCACAATGGGGTGCCAATAAACTTTGTCCCAGAAATGGAGGAACATTCACCTGATGGAGACACGGAATCTTCTTAA
Protein sequence

>MS.gene024657.t1

MTSNTTARNVCPPPMQPASNGVFQGDHPLDYALPLAILQICLVLAVTRGLAYLLKPLRQPRVIAEIVGGILLGPSALGRNKSYLHAVFPPKSLPVLDTLANLGLIFFLFLAGIELDPKSLRKTGGRVLAIAIAGISLPFALGIGSSFVLQGTIAKGVNTSAFLVYMGVALSITAFPVLARILAELKLLTTSVGRMAMSAAAVNDVAAWILLALAVALSGNSQSPFVSLWVFLSGCGFVVCSILIVLPIFKWMAQQCHEGEPVDELYICATLAAVLAAGFVTDAIGIHAMFGAFVFGILVPKDGAFAGALVEKIEDLVSGLLLPLYFVSSGLKTNIATIQGLQSWGLLVFVTFTACFGKIVGTIVVSLLCKVPLNESLVLGFLMNSKGLVELIVLNIGKDRKVLNDQTFAIMVFMALITTFMTTPLVLAAYKRKERKSNYKYRTIERKNADGQLRILACFHGSRNIPSMINLIEASRGIKKHDTLCVYAMHLKEFCERSSSILMAQKVRQNGLPFWDKGHHGDSVHVIVAFEAYQKLSHVCVRPMIAISSMANIHEDICATADRKRAAVIILPFHKQQRLDSSLDIIRNDFRLVNKRVLEHAPCSVGIFVDRGLGGSCHVSASNVSYCIVVLFFGGGDDREALAYGARMAEHPGIRLVVFRFLLEPNIVGQITKVDVGDSSSSNSVSDSEDDEFLAEFKLKTASDDSIIYEEKIVKDAAETVATIRVINFCNLFLVGRRPDGELAFALERSECAELGPVGGLLASQDFRTTASILVMQQYHNGVPINFVPEMEEHSPDGDTESS