AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030202.t1 MTR_4g123583 98.890 811 9 0 1 811 1 811 0.0 1647
MS.gene030202.t1 MTR_4g078120 78.765 810 171 1 1 809 1 810 0.0 1297
MS.gene030202.t1 MTR_5g009780 59.572 794 305 4 3 793 6 786 0.0 968
MS.gene030202.t1 MTR_5g009770 59.949 789 298 4 3 788 6 779 0.0 964
MS.gene030202.t1 MTR_5g009800 56.599 788 305 6 9 793 12 765 0.0 905
MS.gene030202.t1 MTR_5g009770 58.522 663 257 4 129 788 1 648 0.0 789
MS.gene030202.t1 MTR_8g093780 45.739 798 414 10 1 786 1 791 0.0 723
MS.gene030202.t1 MTR_3g096380 45.443 790 411 10 6 786 12 790 0.0 707
MS.gene030202.t1 MTR_7g099800 51.816 826 331 23 12 787 8 816 0.0 690
MS.gene030202.t1 MTR_2g011520 43.918 781 410 9 15 786 3 764 0.0 671
MS.gene030202.t1 MTR_7g099750 48.678 832 345 20 12 789 8 811 0.0 660
MS.gene030202.t1 MTR_7g099820 48.120 798 368 15 13 784 5 782 0.0 653
MS.gene030202.t1 MTR_7g099820 52.941 663 286 9 13 657 5 659 0.0 632
MS.gene030202.t1 MTR_3g031170 33.206 786 481 10 8 785 29 778 1.19e-139 432
MS.gene030202.t1 MTR_2g040100 33.375 797 479 17 20 786 36 810 3.04e-132 414
MS.gene030202.t1 MTR_3g037270 32.107 788 491 14 20 786 25 789 1.05e-129 407
MS.gene030202.t1 MTR_5g067690 32.050 805 504 14 3 786 10 792 8.41e-129 405
MS.gene030202.t1 MTR_1g043400 31.773 812 493 16 7 786 3 785 5.65e-128 402
MS.gene030202.t1 MTR_3g037260 31.345 788 499 14 20 786 21 787 6.22e-126 397
MS.gene030202.t1 MTR_0002s1180 31.546 802 511 13 5 786 3 786 2.99e-125 395
MS.gene030202.t1 MTR_5g074360 30.976 820 504 19 3 798 14 795 1.52e-124 394
MS.gene030202.t1 MTR_1g045870 31.566 811 481 17 7 786 3 770 1.07e-122 388
MS.gene030202.t1 MTR_3g071990 30.025 796 501 16 6 785 10 765 1.96e-122 388
MS.gene030202.t1 MTR_5g074380 31.083 785 492 16 16 785 76 826 3.12e-121 386
MS.gene030202.t1 MTR_5g074340 29.963 811 503 18 15 802 30 798 1.20e-119 381
MS.gene030202.t1 MTR_5g074320 30.821 743 451 17 65 785 10 711 9.53e-109 350
MS.gene030202.t1 MTR_3g071990 30.278 720 446 17 82 785 4 683 1.27e-107 347
MS.gene030202.t1 MTR_3g031160 28.340 801 516 17 6 788 22 782 1.50e-104 340
MS.gene030202.t1 MTR_3g071880 27.945 798 515 20 18 784 22 790 2.16e-102 335
MS.gene030202.t1 MTR_3g498715 28.554 802 503 19 5 781 32 788 9.51e-98 322
MS.gene030202.t1 MTR_6g015940 29.383 810 499 19 3 785 22 785 5.18e-96 317
MS.gene030202.t1 MTR_4g037755 28.278 778 496 19 49 798 38 781 2.79e-95 315
MS.gene030202.t1 MTR_6g053320 30.108 744 447 21 80 792 71 772 5.01e-95 314
MS.gene030202.t1 MTR_3g071870 28.714 801 506 21 16 785 33 799 1.18e-94 314
MS.gene030202.t1 MTR_8g085260 27.736 804 508 17 10 785 31 789 2.02e-90 302
MS.gene030202.t1 MTR_5g088790 27.662 817 514 16 5 785 39 814 5.74e-89 299
MS.gene030202.t1 MTR_5g088450 26.790 810 524 20 5 785 22 791 1.13e-88 298
MS.gene030202.t1 MTR_3g083850 26.814 813 515 21 10 791 27 790 1.41e-88 297
MS.gene030202.t1 MTR_5g088430 26.601 812 522 21 10 791 27 794 6.22e-88 296
MS.gene030202.t1 MTR_5g088470 27.261 807 521 24 5 785 22 788 6.36e-88 295
MS.gene030202.t1 MTR_7g053000 27.050 817 519 17 5 785 39 814 3.65e-87 294
MS.gene030202.t1 MTR_3g031030 27.898 785 500 18 39 795 28 774 1.05e-86 292
MS.gene030202.t1 MTR_7g052680 27.173 817 518 17 5 785 39 814 1.95e-86 292
MS.gene030202.t1 MTR_7g052970 27.050 817 519 17 5 785 39 814 2.18e-86 292
MS.gene030202.t1 MTR_4g029520 26.166 772 532 15 35 786 25 778 2.61e-84 285
MS.gene030202.t1 MTR_3g110700 26.726 782 533 16 24 786 15 775 3.75e-83 282
MS.gene030202.t1 MTR_5g088840 27.050 817 520 19 5 785 39 815 1.39e-82 281
MS.gene030202.t1 MTR_7g085870 26.167 814 517 20 13 785 24 794 2.56e-82 281
MS.gene030202.t1 MTR_7g052895 25.665 526 358 8 5 505 39 556 5.11e-52 194
MS.gene030202.t1 MTR_3g465680 30.534 393 265 6 17 404 44 433 6.50e-52 196
MS.gene030202.t1 MTR_3g465680 27.543 403 235 11 398 785 555 915 5.14e-35 144
MS.gene030202.t1 MTR_1g082340 82.474 97 16 1 452 547 82 178 8.35e-49 172
MS.gene030202.t1 MTR_5g061460 80.412 97 18 1 452 547 15 111 7.86e-47 164
MS.gene030202.t1 MTR_5g083560 29.697 330 190 9 466 785 1 298 2.28e-25 108
MS.gene030202.t1 MTR_1g023830 79.592 49 9 1 500 547 1 49 9.24e-21 87.8
MS.gene030202.t1 MTR_3g083860 25.243 206 117 7 2 202 19 192 1.22e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030202.t1 AT3G17630 70.647 804 216 3 1 801 1 787 0.0 1131
MS.gene030202.t1 AT3G17630 70.647 804 216 3 1 801 1 787 0.0 1131
MS.gene030202.t1 AT5G41610 62.453 799 279 7 1 789 1 788 0.0 989
MS.gene030202.t1 AT5G41610 62.453 799 279 7 1 789 1 788 0.0 989
MS.gene030202.t1 AT4G23700 60.875 800 294 9 1 786 1 795 0.0 958
MS.gene030202.t1 AT4G23700 60.875 800 294 9 1 786 1 795 0.0 958
MS.gene030202.t1 AT5G41610 61.970 731 258 6 68 789 1 720 0.0 891
MS.gene030202.t1 AT1G64170 52.905 809 329 14 4 786 10 792 0.0 797
MS.gene030202.t1 AT2G13620 47.297 814 397 10 5 806 12 805 0.0 731
MS.gene030202.t1 AT3G53720 51.345 818 347 17 12 787 8 816 0.0 691
MS.gene030202.t1 AT3G53720 50.933 750 317 17 80 787 3 743 0.0 608
MS.gene030202.t1 AT1G05580 35.451 787 468 12 19 789 40 802 1.51e-147 455
MS.gene030202.t1 AT1G05580 35.854 714 418 12 92 789 2 691 8.73e-134 416
MS.gene030202.t1 AT2G31910 33.037 787 487 14 19 788 26 789 1.29e-133 418
MS.gene030202.t1 AT2G31910 33.333 714 436 14 92 788 2 692 3.37e-119 377
MS.gene030202.t1 AT2G31910 33.333 714 436 14 92 788 2 692 3.37e-119 377
MS.gene030202.t1 AT1G06970 31.380 819 511 18 5 811 25 804 2.47e-118 377
MS.gene030202.t1 AT2G30240 31.021 793 499 17 6 785 28 785 7.31e-105 342
MS.gene030202.t1 AT5G37060 26.773 818 532 13 6 785 41 829 6.46e-91 305
MS.gene030202.t1 AT5G01690 28.247 793 512 16 8 785 17 767 8.80e-89 297
MS.gene030202.t1 AT5G58460 26.368 804 527 13 18 785 53 827 1.41e-88 299
MS.gene030202.t1 AT3G44900 27.399 792 512 19 27 785 51 812 1.07e-86 293
MS.gene030202.t1 AT5G22900 26.087 828 522 20 11 785 27 817 1.13e-84 287
MS.gene030202.t1 AT3G52080 27.934 784 508 19 32 785 28 784 1.03e-78 271
MS.gene030202.t1 AT1G79400 26.343 782 542 14 24 791 17 778 1.89e-76 264
MS.gene030202.t1 AT2G28180 27.538 788 513 18 28 791 61 814 9.03e-76 263
MS.gene030202.t1 AT1G16380 25.409 795 535 17 24 791 17 780 1.21e-72 253
MS.gene030202.t1 AT5G22910 26.422 791 502 21 21 774 37 784 2.83e-70 247
MS.gene030202.t1 AT5G01680 25.403 807 539 18 2 785 9 775 3.52e-70 247
MS.gene030202.t1 AT1G08150 26.761 781 504 22 27 779 62 802 2.27e-69 245
MS.gene030202.t1 AT3G44930 25.546 779 506 17 28 776 35 769 1.34e-65 234
MS.gene030202.t1 AT3G44910 25.548 775 499 16 28 776 35 757 1.25e-64 231
MS.gene030202.t1 AT1G08140 25.095 793 517 20 28 785 53 803 1.21e-63 229
MS.gene030202.t1 AT2G28170 25.377 796 506 23 27 785 54 798 1.87e-62 225
MS.gene030202.t1 AT3G44920 25.443 790 507 18 28 783 35 776 2.59e-54 201
MS.gene030202.t1 AT1G08135 24.938 802 495 26 27 785 57 794 2.41e-53 199
MS.gene030202.t1 AT5G51710 22.759 435 274 13 33 439 154 554 6.87e-13 72.8
MS.gene030202.t1 AT5G51710 23.188 414 268 12 33 430 154 533 9.95e-13 72.0

Find 181 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTGTTCTGTTGGAATTT+TGG 0.120950 8.2:+9465480 MS.gene030202:CDS
CATCGATACGCTGGTGTTTA+TGG 0.150896 8.2:-9465396 None:intergenic
ATTGGAATTCATGCATTATT+TGG 0.159696 8.2:+9464129 MS.gene030202:CDS
AGCAAGTGAAGTTTCCTTTA+AGG 0.186167 8.2:+9465537 MS.gene030202:CDS
ACAAAGTCTTCCTCGCTTTC+GGG 0.227411 8.2:-9465113 None:intergenic
TGTCCCTTTCCTTGTCTTCA+TGG 0.230128 8.2:+9463756 MS.gene030202:CDS
TATCACATTGACATTGGTTT+TGG 0.230633 8.2:+9464083 MS.gene030202:CDS
ATTTGCAATTTGTGTTCTTA+TGG 0.243891 8.2:+9464901 MS.gene030202:CDS
TCCTCTTGTTATGGAGGAAT+TGG 0.251015 8.2:+9466068 MS.gene030202:CDS
GAAGATTACAACAACCTTAA+AGG 0.252758 8.2:-9465551 None:intergenic
TACAAAGTCTTCCTCGCTTT+CGG 0.253530 8.2:-9465114 None:intergenic
TGTATACTGCCATCACTATT+GGG 0.269576 8.2:-9464949 None:intergenic
GCAACAATGGAATGCCCTTT+TGG 0.272307 8.2:+9465203 MS.gene030202:CDS
TCAGCTGAACTTGGACCTAT+TGG 0.290347 8.2:+9465964 MS.gene030202:CDS
CATTCATGCTCTTTGCACTA+TGG 0.290611 8.2:-9465804 None:intergenic
CTATAAGTGGAGGGGTTTCT+TGG 0.297538 8.2:+9464289 MS.gene030202:CDS
CTCCACTTCTGCATCAATCT+TGG 0.302772 8.2:+9466011 MS.gene030202:CDS
AGTGCAAGAGCTTCTCTAAA+AGG 0.305255 8.2:-9464393 None:intergenic
ATCACATTCCCATTTGTTCT+TGG 0.308008 8.2:+9463682 MS.gene030202:CDS
GAGCAAGAGTAATTTGATAT+TGG 0.309795 8.2:+9465897 MS.gene030202:CDS
CCTGGAATGACATTGTCTTT+TGG 0.310244 8.2:+9465670 MS.gene030202:CDS
TTGTATACTGCCATCACTAT+TGG 0.316902 8.2:-9464950 None:intergenic
TGGACCTATTGGAAGCTATA+TGG 0.318011 8.2:+9465975 MS.gene030202:CDS
AGGGACAGGTTGTGCACCTT+TGG 0.336201 8.2:-9463740 None:intergenic
AGGACTGTTAAGCTTCTCTT+TGG 0.339704 8.2:-9463544 None:intergenic
GCCTTAGCAATTGCCCTTTG+TGG 0.342396 8.2:+9463658 MS.gene030202:CDS
GCTCTTGCCATATCATTATC+TGG 0.347069 8.2:+9463913 MS.gene030202:CDS
TGATATTCATCCTCTTGTTA+TGG 0.348410 8.2:+9466059 MS.gene030202:CDS
CACTCCACAATTGTTCATCT+TGG 0.352984 8.2:-9465777 None:intergenic
TATCTATGCAATGCACTTGA+TGG 0.358211 8.2:+9465135 MS.gene030202:CDS
AAGGTTGTTGTAATCTTCTT+CGG 0.366064 8.2:+9465556 MS.gene030202:CDS
GTCCCTTTCCTTGTCTTCAT+GGG 0.366810 8.2:+9463757 MS.gene030202:CDS
CAAATGTAAAGCTCTTTAAC+AGG 0.373112 8.2:-9464060 None:intergenic
TGATATTGAGACAGCATTGA+TGG 0.373365 8.2:+9465870 MS.gene030202:CDS
TGTTAATGATGTTGCAGCTT+GGG 0.380742 8.2:+9463882 MS.gene030202:CDS
GTTATCTTTACTGCTTGCTT+TGG 0.382323 8.2:+9464327 MS.gene030202:CDS
GATCATGAAGCACTTGCTTA+TGG 0.387350 8.2:+9465589 MS.gene030202:CDS
CACTAGTACAAATATCTTCA+TGG 0.402538 8.2:-9465336 None:intergenic
GTTGGTGTGTCTGGCACTTC+AGG 0.403487 8.2:-9466096 None:intergenic
TTCCTCGCTTTCGGGTTCCT+CGG 0.404658 8.2:-9465105 None:intergenic
TCCTCGCTTTCGGGTTCCTC+GGG 0.406728 8.2:-9465104 None:intergenic
GTTCCTATGCCAAGAACAAA+TGG 0.410938 8.2:-9463691 None:intergenic
AACTAACGTGTTGGTGTGTC+TGG 0.412667 8.2:-9466105 None:intergenic
CGTCGCCCCTGATTTCACTC+TGG 0.415870 8.2:+9463944 MS.gene030202:CDS
GCATAACCCAGAGTGAAATC+AGG 0.417320 8.2:-9463951 None:intergenic
CACTATTGGGGTGGTGATGA+AGG 0.425200 8.2:-9464936 None:intergenic
TTGTTCTTCTTATTCCTAGT+AGG 0.428237 8.2:+9463592 MS.gene030202:CDS
ACAACATGGAGTAAAATTCC+TGG 0.428599 8.2:-9465631 None:intergenic
TATAAGTGGAGGGGTTTCTT+GGG 0.428762 8.2:+9464290 MS.gene030202:CDS
CCAGCAAAAGGACCATCTTT+AGG 0.431587 8.2:-9464177 None:intergenic
TCTTTAACAGGTTCACCCTC+AGG 0.442719 8.2:-9464048 None:intergenic
TTACTAACCAATGGTGCAAC+CGG 0.444387 8.2:-9465934 None:intergenic
TGAAGAATCAATTAAGTATG+AGG 0.445267 8.2:+9465825 MS.gene030202:CDS
CTGAATCTTGATCTTTGCGT+TGG 0.445666 8.2:-9465012 None:intergenic
CCAAAAGACAATGTCATTCC+AGG 0.449037 8.2:-9465670 None:intergenic
CTGCTTGGGCCATCAGCAAT+AGG 0.449639 8.2:+9463490 MS.gene030202:CDS
CTGTTAATGATGTTGCAGCT+TGG 0.451241 8.2:+9463881 MS.gene030202:CDS
ACAAAATGATGAAGATCAAA+TGG 0.457736 8.2:+9465234 MS.gene030202:CDS
TCTCATGAACACCAAGGGAT+TGG 0.457954 8.2:+9464422 MS.gene030202:CDS
AATGCCACCGGTTGCACCAT+TGG 0.458140 8.2:+9465927 MS.gene030202:CDS
AACAGTGATTCAGCTGAACT+TGG 0.462781 8.2:+9465955 MS.gene030202:CDS
GGACTGTTAAGCTTCTCTTT+GGG 0.464658 8.2:-9463543 None:intergenic
GATGGAACCATGGAGTCATT+AGG 0.464824 8.2:+9465415 MS.gene030202:CDS
GTCGCCCCTGATTTCACTCT+GGG 0.466919 8.2:+9463945 MS.gene030202:CDS
TCGCTTCGACCTATTGCTGA+TGG 0.467719 8.2:-9463499 None:intergenic
AGTCATGCACCTTGTTCTGT+TGG 0.468441 8.2:+9465472 MS.gene030202:CDS
ATGCGTTCAATCCGTAGAAC+AGG 0.468555 8.2:+9463628 MS.gene030202:CDS
AAGACCGTTGCTTTCATACA+TGG 0.468874 8.2:+9464014 MS.gene030202:CDS
GTTATCGCTTTCCAAACCTA+TGG 0.474315 8.2:+9465256 MS.gene030202:CDS
TTTAGAGAAGCTCTTGCACT+TGG 0.475505 8.2:+9464396 MS.gene030202:CDS
TAAGGTGCTCCTCTTCGAGC+TGG 0.478801 8.2:-9464974 None:intergenic
GGTGCAGGACATGTCACATT+AGG 0.480678 8.2:-9462752 None:intergenic
GAAGCCATATAGCTTCCAAT+AGG 0.487421 8.2:-9465979 None:intergenic
GAACACAAATTGCAAATGCT+TGG 0.489528 8.2:-9464895 None:intergenic
AAGAGTAATTTGATATTGGT+TGG 0.496000 8.2:+9465901 MS.gene030202:CDS
ACAAATGTGGCTACTATAAG+TGG 0.497636 8.2:+9464276 MS.gene030202:CDS
AAGATTGAAGATCTTGTGTC+TGG 0.498090 8.2:+9464213 MS.gene030202:CDS
CAATGTTGGCTAGTGTGTCT+AGG 0.501202 8.2:-9463564 None:intergenic
TTGTGCACCTTTGGAGATTG+TGG 0.501442 8.2:-9463731 None:intergenic
TGGGAATGTGATTCCACAAA+GGG 0.501645 8.2:-9463671 None:intergenic
AGATTCAGAGCTCAGAGTCT+TGG 0.507048 8.2:+9465027 MS.gene030202:CDS
CCGTTAGACGTGGCCTTCAT+CGG 0.507520 8.2:-9462773 None:intergenic
CACCAAGATTGATGCAGAAG+TGG 0.507651 8.2:-9466013 None:intergenic
AGCTAGGATTCGAGCGAGGA+CGG 0.508099 8.2:-9463806 None:intergenic
CCGATGAAGGCCACGTCTAA+CGG 0.510024 8.2:+9462773 MS.gene030202:CDS
GACGTGGCCTTCATCGGTGC+AGG 0.510090 8.2:-9462767 None:intergenic
TCAATCAAAACACCAGCAAA+AGG 0.510996 8.2:-9464189 None:intergenic
TCCACAAAGGGCAATTGCTA+AGG 0.512792 8.2:-9463659 None:intergenic
GAAGAACAAAAGACCAATGT+TGG 0.513906 8.2:-9463578 None:intergenic
TGCAGGGAGGAATACTGCTT+GGG 0.514991 8.2:+9463476 MS.gene030202:intron
GTCGTCGCCAGATAATGATA+TGG 0.518435 8.2:-9463920 None:intergenic
CATTTGTATCACATTGACAT+TGG 0.519281 8.2:+9464077 MS.gene030202:CDS
TGTCGAGTTCAAGACCTACT+AGG 0.520539 8.2:-9463606 None:intergenic
ATGCAGGGAGGAATACTGCT+TGG 0.520657 8.2:+9463475 MS.gene030202:intron
GCTAGGATTCGAGCGAGGAC+GGG 0.524066 8.2:-9463805 None:intergenic
GGTATAATTATGCCTAAAGA+TGG 0.525746 8.2:+9464165 MS.gene030202:CDS
TTCCCATTTGTTCTTGGCAT+AGG 0.530710 8.2:+9463688 MS.gene030202:CDS
CTTTAACAGGTTCACCCTCA+GGG 0.537753 8.2:-9464047 None:intergenic
ATGAGAATGGCAGAACATCC+AGG 0.538151 8.2:+9465613 MS.gene030202:CDS
GAGAGCAGAAATTGCTGTCA+TGG 0.538200 8.2:-9465305 None:intergenic
GTAAAGTTCATTTCTCCACC+TGG 0.538553 8.2:+9465652 MS.gene030202:CDS
TTCCTATGCCAAGAACAAAT+GGG 0.538714 8.2:-9463690 None:intergenic
CTACAAGGTTGATTAGTGTA+GGG 0.540493 8.2:-9465075 None:intergenic
TCTACAAGGTTGATTAGTGT+AGG 0.546671 8.2:-9465076 None:intergenic
AAACTACTAACCACTGATGT+TGG 0.547854 8.2:+9463835 MS.gene030202:CDS
ACCAAAATTCCAACAGAACA+AGG 0.549877 8.2:-9465481 None:intergenic
AATTAAGTATGAGGAAAGGA+TGG 0.549955 8.2:+9465834 MS.gene030202:CDS
ACACCCATGAAGACAAGGAA+AGG 0.553825 8.2:-9463760 None:intergenic
GTATACTGCCATCACTATTG+GGG 0.558105 8.2:-9464948 None:intergenic
CACCCATGAAGACAAGGAAA+GGG 0.558235 8.2:-9463759 None:intergenic
CATAACCCAGAGTGAAATCA+GGG 0.561076 8.2:-9463950 None:intergenic
CATAAACACCAGCGTATCGA+TGG 0.563693 8.2:+9465397 MS.gene030202:CDS
ATACGCTGGTGTTTATGGAA+TGG 0.565041 8.2:-9465391 None:intergenic
CTCAGTATCAATGCTATGCA+AGG 0.565314 8.2:+9464368 MS.gene030202:CDS
GATATTGAAGGTAGCCATGA+TGG 0.569712 8.2:+9465745 MS.gene030202:CDS
ATGGCTAAGCGTTCCCCTGA+GGG 0.570360 8.2:+9464033 MS.gene030202:CDS
TGAATGTCCTAATGACTCCA+TGG 0.570671 8.2:-9465422 None:intergenic
AATGAGCTCAACCAATCCCT+TGG 0.575721 8.2:-9464433 None:intergenic
TGCATGAATTCCAATAGTAT+CGG 0.577236 8.2:-9464121 None:intergenic
AGAGCAGAAATTGCTGTCAT+GGG 0.578202 8.2:-9465304 None:intergenic
TCCAATTCCTCCATAACAAG+AGG 0.579300 8.2:-9466069 None:intergenic
ACTTGCTTATGGTATGAGAA+TGG 0.579368 8.2:+9465600 MS.gene030202:CDS
GTTGTTTGAGTGGTTTGCAA+AGG 0.579896 8.2:-9462889 None:intergenic
GTTGTGATTGATGATATTGA+AGG 0.581543 8.2:+9465733 MS.gene030202:CDS
TCTTTGGGAAAACTGTGTGT+AGG 0.583416 8.2:-9463528 None:intergenic
AAAACCAAGATGAACAATTG+TGG 0.583535 8.2:+9465773 MS.gene030202:CDS
TATTCATCCTCTTGTTATGG+AGG 0.583822 8.2:+9466062 MS.gene030202:CDS
GACATGTCCTGCACCGATGA+AGG 0.584379 8.2:+9462760 MS.gene030202:CDS
GCTGGTGTTTATGGAATGGA+AGG 0.586936 8.2:-9465387 None:intergenic
TCACTCTGGGTTATGCTCTG+TGG 0.589152 8.2:+9463958 MS.gene030202:CDS
GAGCAACACCCATGAAGACA+AGG 0.593494 8.2:-9463765 None:intergenic
GGATTTCTCATGAACACCAA+GGG 0.596547 8.2:+9464417 MS.gene030202:CDS
CTAGACACACTAGCCAACAT+TGG 0.598588 8.2:+9463565 MS.gene030202:CDS
ATGAAGACAAGGAAAGGGAC+AGG 0.600424 8.2:-9463754 None:intergenic
TAGTGGTTTGAAGACAAATG+TGG 0.600827 8.2:+9464263 MS.gene030202:CDS
ATGACTCGAGGTTGTTTGAG+TGG 0.603036 8.2:-9462899 None:intergenic
GAATCACTGTTACTAACCAA+TGG 0.603558 8.2:-9465943 None:intergenic
TCCCGAGGAACCCGAAAGCG+AGG 0.605796 8.2:+9465103 MS.gene030202:CDS
GATGAAATCAACTAACGTGT+TGG 0.605876 8.2:-9466114 None:intergenic
CCATGGTTCCATCGATACGC+TGG 0.609696 8.2:-9465405 None:intergenic
GAGCTCATTGTTCTCAACAT+CGG 0.610796 8.2:+9464447 MS.gene030202:CDS
AATCAATTAAGTATGAGGAA+AGG 0.611444 8.2:+9465830 MS.gene030202:CDS
TTAGTAGTTTGAGCTCAGCT+AGG 0.611873 8.2:-9463822 None:intergenic
GTTGTTGTAATCTTCTTCGG+AGG 0.614692 8.2:+9465559 MS.gene030202:CDS
TTGGTTGATCGCGGTCTCGG+AGG 0.615743 8.2:+9465499 MS.gene030202:CDS
ATTGGTTGGTAGAATGCCAC+CGG 0.617567 8.2:+9465915 MS.gene030202:CDS
CATCACCACCCCAATAGTGA+TGG 0.619210 8.2:+9464940 MS.gene030202:CDS
ATGATTTCTGCAATGACTCG+AGG 0.619902 8.2:-9462911 None:intergenic
TAGGGATGTTGCGTGTGCTG+TGG 0.621846 8.2:-9465057 None:intergenic
TTCCTCGGGATGATTCTACA+AGG 0.623083 8.2:-9465090 None:intergenic
ATGTGGCTACTATAAGTGGA+GGG 0.627903 8.2:+9464280 MS.gene030202:CDS
CTTAGAGCCACAATCTCCAA+AGG 0.629193 8.2:+9463724 MS.gene030202:CDS
TGTGGCTACTATAAGTGGAG+GGG 0.631044 8.2:+9464281 MS.gene030202:CDS
GTTGCGTGCTTTGTGAACCA+TGG 0.633464 8.2:-9465185 None:intergenic
CCACTAGAAGCAAAATAGAG+TGG 0.635208 8.2:-9464246 None:intergenic
GTTAATTCTTCAGATATGTG+TGG 0.635681 8.2:+9462838 MS.gene030202:CDS
AATGTGGCTACTATAAGTGG+AGG 0.637657 8.2:+9464279 MS.gene030202:CDS
AACGGAAGTGCATAATCGAG+AGG 0.638478 8.2:-9462815 None:intergenic
TTGGAATGCACCGTTAGACG+TGG 0.639960 8.2:-9462783 None:intergenic
CCAGCGTATCGATGGAACCA+TGG 0.641905 8.2:+9465405 MS.gene030202:CDS
TGGATTTCTCATGAACACCA+AGG 0.642435 8.2:+9464416 MS.gene030202:CDS
GTTCACAAAGCACGCAACAA+TGG 0.642568 8.2:+9465190 MS.gene030202:CDS
TGCTATACGACCAACATCAG+TGG 0.645855 8.2:-9463845 None:intergenic
ATGGGAATGTGATTCCACAA+AGG 0.646197 8.2:-9463672 None:intergenic
CATTGTTCTCAACATCGGAA+AGG 0.647673 8.2:+9464452 MS.gene030202:CDS
CAACATCGGAAAGGATCGCA+AGG 0.652219 8.2:+9464461 MS.gene030202:CDS
CATGGCTAAGCGTTCCCCTG+AGG 0.653527 8.2:+9464032 MS.gene030202:CDS
CTAACCAATGGTGCAACCGG+TGG 0.654366 8.2:-9465931 None:intergenic
TTTAACAGGTTCACCCTCAG+GGG 0.666338 8.2:-9464046 None:intergenic
TTAGCCATGTATGAAAGCAA+CGG 0.666589 8.2:-9464018 None:intergenic
TACTGCCATCACTATTGGGG+TGG 0.669299 8.2:-9464945 None:intergenic
GAGAAATGAACTTTACAACA+TGG 0.677164 8.2:-9465645 None:intergenic
CATATCTGAAGAATTAACAA+CGG 0.681401 8.2:-9462833 None:intergenic
AAAGACAATGTCATTCCAGG+TGG 0.682922 8.2:-9465667 None:intergenic
GTATACAAACCAGCTCGAAG+AGG 0.689387 8.2:+9464965 MS.gene030202:CDS
GATTGTGGCTCTAAGAACAA+CGG 0.700703 8.2:-9463716 None:intergenic
GAATGGAAGGAGTATTATCG+CGG 0.711496 8.2:-9465374 None:intergenic
AACCTTGTAGAATCATCCCG+AGG 0.713913 8.2:+9465088 MS.gene030202:CDS
AAGATCTTCAGCTATCACCA+TGG 0.719007 8.2:+9465168 MS.gene030202:CDS
GCTCAGCTAGGATTCGAGCG+AGG 0.755526 8.2:-9463810 None:intergenic
ATAACCCAGAGTGAAATCAG+GGG 0.767323 8.2:-9463949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTAATCTTATAAAG+TGG + chr8.2:9463100-9463119 MS.gene030202:intron 10.0%
!! AAAATATAACCATCAAATTA+AGG - chr8.2:9463008-9463027 None:intergenic 15.0%
!! AAATATAACCATCAAATTAA+GGG - chr8.2:9463007-9463026 None:intergenic 15.0%
!! TCAGAAAAGAATTAAAATAT+CGG + chr8.2:9464620-9464639 MS.gene030202:intron 15.0%
!! TTGAAATATTTAACGATAAT+TGG - chr8.2:9464804-9464823 None:intergenic 15.0%
!!! ATTTTGTCATTAATTATTAG+AGG - chr8.2:9464748-9464767 None:intergenic 15.0%
!!! GTTTTATATTAAGATATAAG+TGG + chr8.2:9463351-9463370 MS.gene030202:intron 15.0%
!! CAGAAAAGAATTAAAATATC+GGG + chr8.2:9464621-9464640 MS.gene030202:intron 20.0%
!! TAATTATTAGAGGATCAATA+AGG - chr8.2:9464738-9464757 None:intergenic 20.0%
!! TTTCAAATCTTTCATTACTT+TGG + chr8.2:9464818-9464837 MS.gene030202:intron 20.0%
!! TTTGATAAAACAACAAATTG+TGG - chr8.2:9462978-9462997 None:intergenic 20.0%
!!! ATTTTGTTTTTTGTTCCAAA+AGG - chr8.2:9465221-9465240 None:intergenic 20.0%
!!! TGTTTTGTTTTGTAAATTAG+TGG + chr8.2:9463245-9463264 MS.gene030202:intron 20.0%
!!! TTTTGTTTTTTGTTCCAAAA+GGG - chr8.2:9465220-9465239 None:intergenic 20.0%
! AAATTGATATGTAAGCTAGT+CGG - chr8.2:9463224-9463243 None:intergenic 25.0%
! AACAAAATTGCACTGAAATA+TGG - chr8.2:9464594-9464613 None:intergenic 25.0%
! AAGAGTAATTTGATATTGGT+TGG + chr8.2:9465901-9465920 MS.gene030202:CDS 25.0%
! AATCAATTAAGTATGAGGAA+AGG + chr8.2:9465830-9465849 MS.gene030202:CDS 25.0%
! ACAAAATGATGAAGATCAAA+TGG + chr8.2:9465234-9465253 MS.gene030202:CDS 25.0%
! ATTGGAATTCATGCATTATT+TGG + chr8.2:9464129-9464148 MS.gene030202:CDS 25.0%
! ATTTGCAATTTGTGTTCTTA+TGG + chr8.2:9464901-9464920 MS.gene030202:CDS 25.0%
! CATATCTGAAGAATTAACAA+CGG - chr8.2:9462836-9462855 None:intergenic 25.0%
! TGAAGAATCAATTAAGTATG+AGG + chr8.2:9465825-9465844 MS.gene030202:CDS 25.0%
! TGGACTAATGATACAAAATA+GGG - chr8.2:9462958-9462977 None:intergenic 25.0%
!! CGATGTTGGTTATTATATTA+AGG + chr8.2:9463295-9463314 MS.gene030202:intron 25.0%
!!! ACCTTTTGAATTGATTTTGA+GGG + chr8.2:9463190-9463209 MS.gene030202:intron 25.0%
!!! TACCTTTTGAATTGATTTTG+AGG + chr8.2:9463189-9463208 MS.gene030202:intron 25.0%
!!! TTATTTGGTGCTTTTGTTAT+TGG + chr8.2:9464144-9464163 MS.gene030202:CDS 25.0%
!!! TTTATTTTCTTCCATATGCA+CGG - chr8.2:9463151-9463170 None:intergenic 25.0%
AAAACCAAGATGAACAATTG+TGG + chr8.2:9465773-9465792 MS.gene030202:CDS 30.0%
AAGGTTGTTGTAATCTTCTT+CGG + chr8.2:9465556-9465575 MS.gene030202:CDS 30.0%
AATTAAGTATGAGGAAAGGA+TGG + chr8.2:9465834-9465853 MS.gene030202:CDS 30.0%
AGTTAGTGAGACAATGAATA+AGG + chr8.2:9463050-9463069 MS.gene030202:intron 30.0%
ATGTGAAAATGTTCAATGCA+GGG + chr8.2:9463460-9463479 MS.gene030202:intron 30.0%
CAAATGTAAAGCTCTTTAAC+AGG - chr8.2:9464063-9464082 None:intergenic 30.0%
CACTAGTACAAATATCTTCA+TGG - chr8.2:9465339-9465358 None:intergenic 30.0%
CATTTGTATCACATTGACAT+TGG + chr8.2:9464077-9464096 MS.gene030202:CDS 30.0%
GAAGATTACAACAACCTTAA+AGG - chr8.2:9465554-9465573 None:intergenic 30.0%
GAGAAATGAACTTTACAACA+TGG - chr8.2:9465648-9465667 None:intergenic 30.0%
GAGCAAGAGTAATTTGATAT+TGG + chr8.2:9465897-9465916 MS.gene030202:CDS 30.0%
GGACTAATGATACAAAATAG+GGG - chr8.2:9462957-9462976 None:intergenic 30.0%
GGATACTTCTAAGTATTACT+TGG - chr8.2:9464783-9464802 None:intergenic 30.0%
GGTATAATTATGCCTAAAGA+TGG + chr8.2:9464165-9464184 MS.gene030202:CDS 30.0%
GTTAATTCTTCAGATATGTG+TGG + chr8.2:9462838-9462857 MS.gene030202:CDS 30.0%
TATGTGAAAATGTTCAATGC+AGG + chr8.2:9463459-9463478 MS.gene030202:intron 30.0%
TCCCTCAAAATCAATTCAAA+AGG - chr8.2:9463194-9463213 None:intergenic 30.0%
TGATATTCATCCTCTTGTTA+TGG + chr8.2:9466059-9466078 MS.gene030202:CDS 30.0%
TGCATGAATTCCAATAGTAT+CGG - chr8.2:9464124-9464143 None:intergenic 30.0%
TTGTTCTTCTTATTCCTAGT+AGG + chr8.2:9463592-9463611 MS.gene030202:CDS 30.0%
! AAGAAAGTCCCTTAATTTGA+TGG + chr8.2:9462996-9463015 MS.gene030202:intron 30.0%
! GTGGACTAATGATACAAAAT+AGG - chr8.2:9462959-9462978 None:intergenic 30.0%
! GTTGTGATTGATGATATTGA+AGG + chr8.2:9465733-9465752 MS.gene030202:CDS 30.0%
! TGGACTGTTTTGTGTTTATA+AGG - chr8.2:9464995-9465014 None:intergenic 30.0%
! TGTTCAATTTTCCATAGGTT+TGG - chr8.2:9465270-9465289 None:intergenic 30.0%
! TTTGAAATCAAACGATGATG+TGG - chr8.2:9463127-9463146 None:intergenic 30.0%
!!! AGTTTTGTTACCGATACTAT+TGG + chr8.2:9464111-9464130 MS.gene030202:CDS 30.0%
!!! ATTGTCTTTTGGTGCTAAAT+TGG + chr8.2:9465681-9465700 MS.gene030202:CDS 30.0%
!!! TATCACATTGACATTGGTTT+TGG + chr8.2:9464083-9464102 MS.gene030202:CDS 30.0%
AAACTACTAACCACTGATGT+TGG + chr8.2:9463835-9463854 MS.gene030202:CDS 35.0%
AAGATTGAAGATCTTGTGTC+TGG + chr8.2:9464213-9464232 MS.gene030202:CDS 35.0%
ACAAATGTGGCTACTATAAG+TGG + chr8.2:9464276-9464295 MS.gene030202:CDS 35.0%
ACAACATGGAGTAAAATTCC+TGG - chr8.2:9465634-9465653 None:intergenic 35.0%
ACCAAAATTCCAACAGAACA+AGG - chr8.2:9465484-9465503 None:intergenic 35.0%
ACTTGCTTATGGTATGAGAA+TGG + chr8.2:9465600-9465619 MS.gene030202:CDS 35.0%
AGCAAGTGAAGTTTCCTTTA+AGG + chr8.2:9465537-9465556 MS.gene030202:CDS 35.0%
ATCACATTCCCATTTGTTCT+TGG + chr8.2:9463682-9463701 MS.gene030202:CDS 35.0%
CATTTAGTACCTGTGTTACA+TGG - chr8.2:9464874-9464893 None:intergenic 35.0%
GAACACAAATTGCAAATGCT+TGG - chr8.2:9464898-9464917 None:intergenic 35.0%
GAAGAACAAAAGACCAATGT+TGG - chr8.2:9463581-9463600 None:intergenic 35.0%
GAATCACTGTTACTAACCAA+TGG - chr8.2:9465946-9465965 None:intergenic 35.0%
GTTATCTTTACTGCTTGCTT+TGG + chr8.2:9464327-9464346 MS.gene030202:CDS 35.0%
TAGTGGTTTGAAGACAAATG+TGG + chr8.2:9464263-9464282 MS.gene030202:CDS 35.0%
TATCTATGCAATGCACTTGA+TGG + chr8.2:9465135-9465154 MS.gene030202:CDS 35.0%
TCAATCAAAACACCAGCAAA+AGG - chr8.2:9464192-9464211 None:intergenic 35.0%
TGATTTCAAATCCGTGCATA+TGG + chr8.2:9463137-9463156 MS.gene030202:intron 35.0%
TGTAATTCTCCATGTAACAC+AGG + chr8.2:9464862-9464881 MS.gene030202:intron 35.0%
TGTATACTGCCATCACTATT+GGG - chr8.2:9464952-9464971 None:intergenic 35.0%
TGTCTCACTAACTTATTGCA+TGG - chr8.2:9463043-9463062 None:intergenic 35.0%
TGTTAATGATGTTGCAGCTT+GGG + chr8.2:9463882-9463901 MS.gene030202:CDS 35.0%
TTAGCCATGTATGAAAGCAA+CGG - chr8.2:9464021-9464040 None:intergenic 35.0%
TTCCTATGCCAAGAACAAAT+GGG - chr8.2:9463693-9463712 None:intergenic 35.0%
TTGTATACTGCCATCACTAT+TGG - chr8.2:9464953-9464972 None:intergenic 35.0%
! ACCTTGTTCTGTTGGAATTT+TGG + chr8.2:9465480-9465499 MS.gene030202:CDS 35.0%
! CTACAAGGTTGATTAGTGTA+GGG - chr8.2:9465078-9465097 None:intergenic 35.0%
! GACACTGTTCAATTTTCCAT+AGG - chr8.2:9465275-9465294 None:intergenic 35.0%
! TATTCATCCTCTTGTTATGG+AGG + chr8.2:9466062-9466081 MS.gene030202:CDS 35.0%
! TCTACAAGGTTGATTAGTGT+AGG - chr8.2:9465079-9465098 None:intergenic 35.0%
! TGATATTGAGACAGCATTGA+TGG + chr8.2:9465870-9465889 MS.gene030202:CDS 35.0%
!! GCTTGCTTTGGAAAAATTGT+TGG + chr8.2:9464339-9464358 MS.gene030202:CDS 35.0%
!!! AGGCTTTTTTACCTGTTCTA+CGG - chr8.2:9463642-9463661 None:intergenic 35.0%
!!! TCTTTTGGTGCTAAATTGGT+TGG + chr8.2:9465685-9465704 MS.gene030202:CDS 35.0%
AAAGACAATGTCATTCCAGG+TGG - chr8.2:9465670-9465689 None:intergenic 40.0%
AACAGTGATTCAGCTGAACT+TGG + chr8.2:9465955-9465974 MS.gene030202:CDS 40.0%
AAGATCTTCAGCTATCACCA+TGG + chr8.2:9465168-9465187 MS.gene030202:CDS 40.0%
AAGTGACAGCAACATTCAAC+AGG - chr8.2:9463427-9463446 None:intergenic 40.0%
AATGTGGCTACTATAAGTGG+AGG + chr8.2:9464279-9464298 MS.gene030202:CDS 40.0%
AGAGCAGAAATTGCTGTCAT+GGG - chr8.2:9465307-9465326 None:intergenic 40.0%
AGGACTGTTAAGCTTCTCTT+TGG - chr8.2:9463547-9463566 None:intergenic 40.0%
AGTGCAAGAGCTTCTCTAAA+AGG - chr8.2:9464396-9464415 None:intergenic 40.0%
ATAACCCAGAGTGAAATCAG+GGG - chr8.2:9463952-9463971 None:intergenic 40.0%
ATACGCTGGTGTTTATGGAA+TGG - chr8.2:9465394-9465413 None:intergenic 40.0%
ATGATTTCTGCAATGACTCG+AGG - chr8.2:9462914-9462933 None:intergenic 40.0%
ATGGGAATGTGATTCCACAA+AGG - chr8.2:9463675-9463694 None:intergenic 40.0%
ATGTGGCTACTATAAGTGGA+GGG + chr8.2:9464280-9464299 MS.gene030202:CDS 40.0%
CACTCCACAATTGTTCATCT+TGG - chr8.2:9465780-9465799 None:intergenic 40.0%
CATAACCCAGAGTGAAATCA+GGG - chr8.2:9463953-9463972 None:intergenic 40.0%
CATTCATGCTCTTTGCACTA+TGG - chr8.2:9465807-9465826 None:intergenic 40.0%
CATTGTTCTCAACATCGGAA+AGG + chr8.2:9464452-9464471 MS.gene030202:CDS 40.0%
CCAAAAGACAATGTCATTCC+AGG - chr8.2:9465673-9465692 None:intergenic 40.0%
CCACTAGAAGCAAAATAGAG+TGG - chr8.2:9464249-9464268 None:intergenic 40.0%
CGATCGAAATCTGGATAGAT+AGG - chr8.2:9464501-9464520 None:intergenic 40.0%
CTCAGTATCAATGCTATGCA+AGG + chr8.2:9464368-9464387 MS.gene030202:CDS 40.0%
CTGAATCTTGATCTTTGCGT+TGG - chr8.2:9465015-9465034 None:intergenic 40.0%
CTGTTAATGATGTTGCAGCT+TGG + chr8.2:9463881-9463900 MS.gene030202:CDS 40.0%
GAAGCCATATAGCTTCCAAT+AGG - chr8.2:9465982-9466001 None:intergenic 40.0%
GAATAATCGTGCATCTACAC+AGG + chr8.2:9463267-9463286 MS.gene030202:intron 40.0%
GACTATAAGCGATCGAAATC+TGG - chr8.2:9464510-9464529 None:intergenic 40.0%
GAGCTCATTGTTCTCAACAT+CGG + chr8.2:9464447-9464466 MS.gene030202:CDS 40.0%
GATATTGAAGGTAGCCATGA+TGG + chr8.2:9465745-9465764 MS.gene030202:CDS 40.0%
GCATTTGGATCGAAATCAGA+CGG - chr8.2:9464660-9464679 None:intergenic 40.0%
GCTCTTGCCATATCATTATC+TGG + chr8.2:9463913-9463932 MS.gene030202:CDS 40.0%
GGACTGTTAAGCTTCTCTTT+GGG - chr8.2:9463546-9463565 None:intergenic 40.0%
GGATAGATAGGAAGACAGAT+AGG - chr8.2:9464489-9464508 None:intergenic 40.0%
GGATTTCTCATGAACACCAA+GGG + chr8.2:9464417-9464436 MS.gene030202:CDS 40.0%
GTAAAGTTCATTTCTCCACC+TGG + chr8.2:9465652-9465671 MS.gene030202:CDS 40.0%
GTATACTGCCATCACTATTG+GGG - chr8.2:9464951-9464970 None:intergenic 40.0%
GTCAGTACATTAGTGGCATT+TGG - chr8.2:9464675-9464694 None:intergenic 40.0%
GTTATCGCTTTCCAAACCTA+TGG + chr8.2:9465256-9465275 MS.gene030202:CDS 40.0%
GTTCCTATGCCAAGAACAAA+TGG - chr8.2:9463694-9463713 None:intergenic 40.0%
GTTGTTGTAATCTTCTTCGG+AGG + chr8.2:9465559-9465578 MS.gene030202:CDS 40.0%
TAAGGCAGTCAGTACATTAG+TGG - chr8.2:9464682-9464701 None:intergenic 40.0%
TACAAAGTCTTCCTCGCTTT+CGG - chr8.2:9465117-9465136 None:intergenic 40.0%
TATAAGTGGAGGGGTTTCTT+GGG + chr8.2:9464290-9464309 MS.gene030202:CDS 40.0%
TCAGCAATCTCAAATCTCCA+TGG + chr8.2:9464528-9464547 MS.gene030202:intron 40.0%
TCCAATTCCTCCATAACAAG+AGG - chr8.2:9466072-9466091 None:intergenic 40.0%
TGAAAATGTTCAATGCAGGG+AGG + chr8.2:9463463-9463482 MS.gene030202:intron 40.0%
TGAATGTCCTAATGACTCCA+TGG - chr8.2:9465425-9465444 None:intergenic 40.0%
TGGACCTATTGGAAGCTATA+TGG + chr8.2:9465975-9465994 MS.gene030202:CDS 40.0%
TGGATTTCTCATGAACACCA+AGG + chr8.2:9464416-9464435 MS.gene030202:CDS 40.0%
TGGGAATGTGATTCCACAAA+GGG - chr8.2:9463674-9463693 None:intergenic 40.0%
TTACTAACCAATGGTGCAAC+CGG - chr8.2:9465937-9465956 None:intergenic 40.0%
TTAGTAGTTTGAGCTCAGCT+AGG - chr8.2:9463825-9463844 None:intergenic 40.0%
TTCCCATTTGTTCTTGGCAT+AGG + chr8.2:9463688-9463707 MS.gene030202:CDS 40.0%
TTTAGAGAAGCTCTTGCACT+TGG + chr8.2:9464396-9464415 MS.gene030202:CDS 40.0%
! AAGACCGTTGCTTTCATACA+TGG + chr8.2:9464014-9464033 MS.gene030202:CDS 40.0%
! AATCGAGAGGATTTTCGTGT+TGG - chr8.2:9462805-9462824 None:intergenic 40.0%
! CCACTCTATTTTGCTTCTAG+TGG + chr8.2:9464246-9464265 MS.gene030202:CDS 40.0%
! CCTGGAATGACATTGTCTTT+TGG + chr8.2:9465670-9465689 MS.gene030202:CDS 40.0%
! GATCATGAAGCACTTGCTTA+TGG + chr8.2:9465589-9465608 MS.gene030202:CDS 40.0%
! GTTGTTTGAGTGGTTTGCAA+AGG - chr8.2:9462892-9462911 None:intergenic 40.0%
! TCCTCTTGTTATGGAGGAAT+TGG + chr8.2:9466068-9466087 MS.gene030202:CDS 40.0%
! TCTTTGGGAAAACTGTGTGT+AGG - chr8.2:9463531-9463550 None:intergenic 40.0%
!! CTTGGTTTTTACTGCCATCA+TGG - chr8.2:9465762-9465781 None:intergenic 40.0%
!! GAATGGAAGGAGTATTATCG+CGG - chr8.2:9465377-9465396 None:intergenic 40.0%
!! GATTGTGGCTCTAAGAACAA+CGG - chr8.2:9463719-9463738 None:intergenic 40.0%
!!! GTTGGAATTTTGGTTGATCG+CGG + chr8.2:9465490-9465509 MS.gene030202:CDS 40.0%
AACCTTGTAGAATCATCCCG+AGG + chr8.2:9465088-9465107 MS.gene030202:CDS 45.0%
AATGAGCTCAACCAATCCCT+TGG - chr8.2:9464436-9464455 None:intergenic 45.0%
ACAAAGTCTTCCTCGCTTTC+GGG - chr8.2:9465116-9465135 None:intergenic 45.0%
ACACCCATGAAGACAAGGAA+AGG - chr8.2:9463763-9463782 None:intergenic 45.0%
AGATTCAGAGCTCAGAGTCT+TGG + chr8.2:9465027-9465046 MS.gene030202:CDS 45.0%
AGCTAGCAATCCACGCATTA+AGG - chr8.2:9464700-9464719 None:intergenic 45.0%
AGTCATGCACCTTGTTCTGT+TGG + chr8.2:9465472-9465491 MS.gene030202:CDS 45.0%
ATGAAGACAAGGAAAGGGAC+AGG - chr8.2:9463757-9463776 None:intergenic 45.0%
ATGACTCGAGGTTGTTTGAG+TGG - chr8.2:9462902-9462921 None:intergenic 45.0%
ATGAGAATGGCAGAACATCC+AGG + chr8.2:9465613-9465632 MS.gene030202:CDS 45.0%
ATGCGTTCAATCCGTAGAAC+AGG + chr8.2:9463628-9463647 MS.gene030202:CDS 45.0%
CACCAAGATTGATGCAGAAG+TGG - chr8.2:9466016-9466035 None:intergenic 45.0%
CACCCATGAAGACAAGGAAA+GGG - chr8.2:9463762-9463781 None:intergenic 45.0%
CATAAACACCAGCGTATCGA+TGG + chr8.2:9465397-9465416 MS.gene030202:CDS 45.0%
CATCGATACGCTGGTGTTTA+TGG - chr8.2:9465399-9465418 None:intergenic 45.0%
CCAGCAAAAGGACCATCTTT+AGG - chr8.2:9464180-9464199 None:intergenic 45.0%
CTAGACACACTAGCCAACAT+TGG + chr8.2:9463565-9463584 MS.gene030202:CDS 45.0%
CTATAAGTGGAGGGGTTTCT+TGG + chr8.2:9464289-9464308 MS.gene030202:CDS 45.0%
CTCCACTTCTGCATCAATCT+TGG + chr8.2:9466011-9466030 MS.gene030202:CDS 45.0%
CTTAGAGCCACAATCTCCAA+AGG + chr8.2:9463724-9463743 MS.gene030202:CDS 45.0%
CTTTAACAGGTTCACCCTCA+GGG - chr8.2:9464050-9464069 None:intergenic 45.0%
GAGAGCAGAAATTGCTGTCA+TGG - chr8.2:9465308-9465327 None:intergenic 45.0%
GATGGAACCATGGAGTCATT+AGG + chr8.2:9465415-9465434 MS.gene030202:CDS 45.0%
GCATAACCCAGAGTGAAATC+AGG - chr8.2:9463954-9463973 None:intergenic 45.0%
GCTGGTGTTTATGGAATGGA+AGG - chr8.2:9465390-9465409 None:intergenic 45.0%
GTATACAAACCAGCTCGAAG+AGG + chr8.2:9464965-9464984 MS.gene030202:CDS 45.0%
GTCCCTTTCCTTGTCTTCAT+GGG + chr8.2:9463757-9463776 MS.gene030202:CDS 45.0%
GTCGTCGCCAGATAATGATA+TGG - chr8.2:9463923-9463942 None:intergenic 45.0%
GTTCACAAAGCACGCAACAA+TGG + chr8.2:9465190-9465209 MS.gene030202:CDS 45.0%
TCAGCTGAACTTGGACCTAT+TGG + chr8.2:9465964-9465983 MS.gene030202:CDS 45.0%
TCCACAAAGGGCAATTGCTA+AGG - chr8.2:9463662-9463681 None:intergenic 45.0%
TCTCATGAACACCAAGGGAT+TGG + chr8.2:9464422-9464441 MS.gene030202:CDS 45.0%
TCTTTAACAGGTTCACCCTC+AGG - chr8.2:9464051-9464070 None:intergenic 45.0%
TGCTATACGACCAACATCAG+TGG - chr8.2:9463848-9463867 None:intergenic 45.0%
TGTCCCTTTCCTTGTCTTCA+TGG + chr8.2:9463756-9463775 MS.gene030202:CDS 45.0%
TGTCGAGTTCAAGACCTACT+AGG - chr8.2:9463609-9463628 None:intergenic 45.0%
TGTGGCTACTATAAGTGGAG+GGG + chr8.2:9464281-9464300 MS.gene030202:CDS 45.0%
TTCCTCGGGATGATTCTACA+AGG - chr8.2:9465093-9465112 None:intergenic 45.0%
TTTAACAGGTTCACCCTCAG+GGG - chr8.2:9464049-9464068 None:intergenic 45.0%
! AACGGAAGTGCATAATCGAG+AGG - chr8.2:9462818-9462837 None:intergenic 45.0%
! CAATGTTGGCTAGTGTGTCT+AGG - chr8.2:9463567-9463586 None:intergenic 45.0%
! CCTAAAGATGGTCCTTTTGC+TGG + chr8.2:9464177-9464196 MS.gene030202:CDS 45.0%
! GCAACAATGGAATGCCCTTT+TGG + chr8.2:9465203-9465222 MS.gene030202:CDS 45.0%
! TTGTGCACCTTTGGAGATTG+TGG - chr8.2:9463734-9463753 None:intergenic 45.0%
!! ATTGGTTGGTAGAATGCCAC+CGG + chr8.2:9465915-9465934 MS.gene030202:CDS 45.0%
!!! ATTTTGGTTGATCGCGGTCT+CGG + chr8.2:9465496-9465515 MS.gene030202:CDS 45.0%
ATGCAGGGAGGAATACTGCT+TGG + chr8.2:9463475-9463494 MS.gene030202:intron 50.0%
CAACATCGGAAAGGATCGCA+AGG + chr8.2:9464461-9464480 MS.gene030202:CDS 50.0%
CATCACCACCCCAATAGTGA+TGG + chr8.2:9464940-9464959 MS.gene030202:CDS 50.0%
CTACACAGGTCTTGCGATGT+TGG + chr8.2:9463281-9463300 MS.gene030202:intron 50.0%
GAGCAACACCCATGAAGACA+AGG - chr8.2:9463768-9463787 None:intergenic 50.0%
GCCTTAGCAATTGCCCTTTG+TGG + chr8.2:9463658-9463677 MS.gene030202:CDS 50.0%
GGTGCAGGACATGTCACATT+AGG - chr8.2:9462755-9462774 None:intergenic 50.0%
GTTGCGTGCTTTGTGAACCA+TGG - chr8.2:9465188-9465207 None:intergenic 50.0%
TACTGCCATCACTATTGGGG+TGG - chr8.2:9464948-9464967 None:intergenic 50.0%
TCACTCTGGGTTATGCTCTG+TGG + chr8.2:9463958-9463977 MS.gene030202:CDS 50.0%
TCGCTTCGACCTATTGCTGA+TGG - chr8.2:9463502-9463521 None:intergenic 50.0%
TGCAGGGAGGAATACTGCTT+GGG + chr8.2:9463476-9463495 MS.gene030202:intron 50.0%
TTGGAATGCACCGTTAGACG+TGG - chr8.2:9462786-9462805 None:intergenic 50.0%
! CACTATTGGGGTGGTGATGA+AGG - chr8.2:9464939-9464958 None:intergenic 50.0%
!! GTACTGACTGCCTTAATGCG+TGG + chr8.2:9464687-9464706 MS.gene030202:intron 50.0%
!! TCACTGATGTGCTGACTCCA+TGG - chr8.2:9464548-9464567 None:intergenic 50.0%
AGCTAGGATTCGAGCGAGGA+CGG - chr8.2:9463809-9463828 None:intergenic 55.0%
AGGGACAGGTTGTGCACCTT+TGG - chr8.2:9463743-9463762 None:intergenic 55.0%
ATGGCTAAGCGTTCCCCTGA+GGG + chr8.2:9464033-9464052 MS.gene030202:CDS 55.0%
CCATGGTTCCATCGATACGC+TGG - chr8.2:9465408-9465427 None:intergenic 55.0%
CCGATGAAGGCCACGTCTAA+CGG + chr8.2:9462773-9462792 MS.gene030202:CDS 55.0%
CCGTTAGACGTGGCCTTCAT+CGG - chr8.2:9462776-9462795 None:intergenic 55.0%
CTAACCAATGGTGCAACCGG+TGG - chr8.2:9465934-9465953 None:intergenic 55.0%
CTGCTTGGGCCATCAGCAAT+AGG + chr8.2:9463490-9463509 MS.gene030202:CDS 55.0%
GTCGCCCCTGATTTCACTCT+GGG + chr8.2:9463945-9463964 MS.gene030202:CDS 55.0%
GTTGGTGTGTCTGGCACTTC+AGG - chr8.2:9466099-9466118 None:intergenic 55.0%
TAGGGATGTTGCGTGTGCTG+TGG - chr8.2:9465060-9465079 None:intergenic 55.0%
! AATGCCACCGGTTGCACCAT+TGG + chr8.2:9465927-9465946 MS.gene030202:CDS 55.0%
! CCAGCGTATCGATGGAACCA+TGG + chr8.2:9465405-9465424 MS.gene030202:CDS 55.0%
! GACATGTCCTGCACCGATGA+AGG + chr8.2:9462760-9462779 MS.gene030202:CDS 55.0%
! TAAGGTGCTCCTCTTCGAGC+TGG - chr8.2:9464977-9464996 None:intergenic 55.0%
!! TTCCTCGCTTTCGGGTTCCT+CGG - chr8.2:9465108-9465127 None:intergenic 55.0%
CATGGCTAAGCGTTCCCCTG+AGG + chr8.2:9464032-9464051 MS.gene030202:CDS 60.0%
CGTCGCCCCTGATTTCACTC+TGG + chr8.2:9463944-9463963 MS.gene030202:CDS 60.0%
GCTAGGATTCGAGCGAGGAC+GGG - chr8.2:9463808-9463827 None:intergenic 60.0%
GCTCAGCTAGGATTCGAGCG+AGG - chr8.2:9463813-9463832 None:intergenic 60.0%
TTGGTTGATCGCGGTCTCGG+AGG + chr8.2:9465499-9465518 MS.gene030202:CDS 60.0%
!! TCCTCGCTTTCGGGTTCCTC+GGG - chr8.2:9465107-9465126 None:intergenic 60.0%
GACGTGGCCTTCATCGGTGC+AGG - chr8.2:9462770-9462789 None:intergenic 65.0%
TCCCGAGGAACCCGAAAGCG+AGG + chr8.2:9465103-9465122 MS.gene030202:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 9462743 9466125 9462743 ID=MS.gene030202
chr8.2 mRNA 9462743 9466125 9462743 ID=MS.gene030202.t1;Parent=MS.gene030202
chr8.2 exon 9462743 9462934 9462743 ID=MS.gene030202.t1.exon1;Parent=MS.gene030202.t1
chr8.2 CDS 9462743 9462934 9462743 ID=cds.MS.gene030202.t1;Parent=MS.gene030202.t1
chr8.2 exon 9463481 9464482 9463481 ID=MS.gene030202.t1.exon2;Parent=MS.gene030202.t1
chr8.2 CDS 9463481 9464482 9463481 ID=cds.MS.gene030202.t1;Parent=MS.gene030202.t1
chr8.2 exon 9464884 9466125 9464884 ID=MS.gene030202.t1.exon3;Parent=MS.gene030202.t1
chr8.2 CDS 9464884 9466125 9464884 ID=cds.MS.gene030202.t1;Parent=MS.gene030202.t1
Gene Sequence

>MS.gene030202

ATGGCGACGCCTAATGTGACATGTCCTGCACCGATGAAGGCCACGTCTAACGGTGCATTCCAACACGAAAATCCTCTCGATTATGCACTTCCGTTGTTAATTCTTCAGATATGTGTGGTTGTCACATTCACTAGATGTATTGCATACCTTTGCAAACCACTCAAACAACCTCGAGTCATTGCAGAAATCATTGTAAGTTGTCTTCTCTTTTCCCCTATTTTGTATCATTAGTCCACAATTTGTTGTTTTATCAAAGAAAGTCCCTTAATTTGATGGTTATATTTTATATTTGAGTTTCCATGCAATAAGTTAGTGAGACAATGAATAAGGCAGTGTGACATGATTGACAAATTATTATAATTATTAATCTTATAAAGTGGTCCACATCATCGTTTGATTTCAAATCCGTGCATATGGAAGAAAATAAAAATTGTCAATGAGAAAATTACCTTTTGAATTGATTTTGAGGGATTAGTCTCCGACTAGCTTACATATCAATTTTTGTTTTGTTTTGTAAATTAGTGGAATAATCGTGCATCTACACAGGTCTTGCGATGTTGGTTATTATATTAAGGTAGTTAATATAAGATTAAAATGTTTAGAATTTTGTTTTATATTAAGATATAAGTGGAATTATTGAAACGTAATTTCTTCTGTTGCAAGTAAAACTTTTGTATGTTGCCTGTTGAATGTTGCTGTCACTTTTGTAAGTTTCTTATGTGAAAATGTTCAATGCAGGGAGGAATACTGCTTGGGCCATCAGCAATAGGTCGAAGCGAGAAATTCCTACACACAGTTTTCCCAAAGAGAAGCTTAACAGTCCTAGACACACTAGCCAACATTGGTCTTTTGTTCTTCTTATTCCTAGTAGGTCTTGAACTCGACATGCGTTCAATCCGTAGAACAGGTAAAAAAGCCTTAGCAATTGCCCTTTGTGGAATCACATTCCCATTTGTTCTTGGCATAGGAACATCCGTTGTTCTTAGAGCCACAATCTCCAAAGGTGCACAACCTGTCCCTTTCCTTGTCTTCATGGGTGTTGCTCTCTCAATCACAGCATTTCCCGTCCTCGCTCGAATCCTAGCTGAGCTCAAACTACTAACCACTGATGTTGGTCGTATAGCAATGTCAGCAGCTGCTGTTAATGATGTTGCAGCTTGGGTACTTCTTGCTCTTGCCATATCATTATCTGGCGACGACACGTCGCCCCTGATTTCACTCTGGGTTATGCTCTGTGGTGCTGCTTTTATTCTCTTTGCTGTTTTTGCTATAAGACCGTTGCTTTCATACATGGCTAAGCGTTCCCCTGAGGGTGAACCTGTTAAAGAGCTTTACATTTGTATCACATTGACATTGGTTTTGGCTTGTAGTTTTGTTACCGATACTATTGGAATTCATGCATTATTTGGTGCTTTTGTTATTGGTATAATTATGCCTAAAGATGGTCCTTTTGCTGGTGTTTTGATTGAGAAGATTGAAGATCTTGTGTCTGGAATCTTTTTGCCACTCTATTTTGCTTCTAGTGGTTTGAAGACAAATGTGGCTACTATAAGTGGAGGGGTTTCTTGGGCACTATTATTACTAGTTATCTTTACTGCTTGCTTTGGAAAAATTGTTGGTACAATCTCAGTATCAATGCTATGCAAGGTGCCTTTTAGAGAAGCTCTTGCACTTGGATTTCTCATGAACACCAAGGGATTGGTTGAGCTCATTGTTCTCAACATCGGAAAGGATCGCAAGGTACCTATCTGTCTTCCTATCTATCCAGATTTCGATCGCTTATAGTCAGCAATCTCAAATCTCCATGGAGTCAGCACATCAGTGACTTTTCGATCGAGATCAGACTATCCATATTTCAGTGCAATTTTGTTGATTTTTCAGAAAAGAATTAAAATATCGGGTCTGAAGTTTGAACCGTCTGATTTCGATCCAAATGCCACTAATGTACTGACTGCCTTAATGCGTGGATTGCTAGCTGCAGACAATCTAAATCCTTATTGATCCTCTAATAATTAATGACAAAATAAAACTTGTTTTCCAAGTAATACTTAGAAGTATCCAATTATCGTTAAATATTTCAAATCTTTCATTACTTTGGTTTGATTTTTTATGCATGTAATGTAATTCTCCATGTAACACAGGTACTAAATGACCAAGCATTTGCAATTTGTGTTCTTATGGCATTATTCACTACCTTCATCACCACCCCAATAGTGATGGCAGTATACAAACCAGCTCGAAGAGGAGCACCTTATAAACACAAAACAGTCCAACGCAAAGATCAAGATTCAGAGCTCAGAGTCTTGGCATGTTTCCACAGCACACGCAACATCCCTACACTAATCAACCTTGTAGAATCATCCCGAGGAACCCGAAAGCGAGGAAGACTTTGTATCTATGCAATGCACTTGATGGAACTCTCAGAAAGATCTTCAGCTATCACCATGGTTCACAAAGCACGCAACAATGGAATGCCCTTTTGGAACAAAAAACAAAATGATGAAGATCAAATGGTTATCGCTTTCCAAACCTATGGAAAATTGAACAGTGTCAATGTTCGTCCCATGACAGCAATTTCTGCTCTCAGCAACATCCATGAAGATATTTGTACTAGTGCTCATCAAAAGCGCGCCGCGATAATACTCCTTCCATTCCATAAACACCAGCGTATCGATGGAACCATGGAGTCATTAGGACATTCATTTCATGTAATCAATGAGCTTGTGTTGAGTCATGCACCTTGTTCTGTTGGAATTTTGGTTGATCGCGGTCTCGGAGGAACAAGTCAAGTTCAAGCAAGTGAAGTTTCCTTTAAGGTTGTTGTAATCTTCTTCGGAGGACGCGACGATCATGAAGCACTTGCTTATGGTATGAGAATGGCAGAACATCCAGGAATTTTACTCCATGTTGTAAAGTTCATTTCTCCACCTGGAATGACATTGTCTTTTGGTGCTAAATTGGTTGGTGTAGCACAAGATAAGAGCAAAACAGTTGTGATTGATGATATTGAAGGTAGCCATGATGGCAGTAAAAACCAAGATGAACAATTGTGGAGTGAATTCCATAGTGCAAAGAGCATGAATGAAGAATCAATTAAGTATGAGGAAAGGATGGTTGAAAGTAAAAATGATATTGAGACAGCATTGATGGAATTGAGCAAGAGTAATTTGATATTGGTTGGTAGAATGCCACCGGTTGCACCATTGGTTAGTAACAGTGATTCAGCTGAACTTGGACCTATTGGAAGCTATATGGCTTCTTCTAGTTTCTCCACTTCTGCATCAATCTTGGTGATTCAACAATATAATTCAACAACTGATATTCATCCTCTTGTTATGGAGGAATTGGATTGTCCTGAAGTGCCAGACACACCAACACGTTAG
Protein sequence

>MS.gene030202.t1

MATPNVTCPAPMKATSNGAFQHENPLDYALPLLILQICVVVTFTRCIAYLCKPLKQPRVIAEIIGGILLGPSAIGRSEKFLHTVFPKRSLTVLDTLANIGLLFFLFLVGLELDMRSIRRTGKKALAIALCGITFPFVLGIGTSVVLRATISKGAQPVPFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWVLLALAISLSGDDTSPLISLWVMLCGAAFILFAVFAIRPLLSYMAKRSPEGEPVKELYICITLTLVLACSFVTDTIGIHALFGAFVIGIIMPKDGPFAGVLIEKIEDLVSGIFLPLYFASSGLKTNVATISGGVSWALLLLVIFTACFGKIVGTISVSMLCKVPFREALALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTTFITTPIVMAVYKPARRGAPYKHKTVQRKDQDSELRVLACFHSTRNIPTLINLVESSRGTRKRGRLCIYAMHLMELSERSSAITMVHKARNNGMPFWNKKQNDEDQMVIAFQTYGKLNSVNVRPMTAISALSNIHEDICTSAHQKRAAIILLPFHKHQRIDGTMESLGHSFHVINELVLSHAPCSVGILVDRGLGGTSQVQASEVSFKVVVIFFGGRDDHEALAYGMRMAEHPGILLHVVKFISPPGMTLSFGAKLVGVAQDKSKTVVIDDIEGSHDGSKNQDEQLWSEFHSAKSMNEESIKYEERMVESKNDIETALMELSKSNLILVGRMPPVAPLVSNSDSAELGPIGSYMASSSFSTSASILVIQQYNSTTDIHPLVMEELDCPEVPDTPTR