Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26574.t1 | XP_003612356.1 | 99.7 | 393 | 1 | 0 | 1 | 393 | 1 | 393 | 5.80E-226 | 793.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26574.t1 | Q42807 | 91.5 | 390 | 31 | 1 | 1 | 390 | 1 | 388 | 2.5e-209 | 729.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26574.t1 | Q4U601 | 99.7 | 393 | 1 | 0 | 1 | 393 | 1 | 393 | 4.2e-226 | 793.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene26574 | 0.812835 | 3.47E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene26574 | 0.819922 | 9.01E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene26574 | 0.852238 | 5.26E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene26574 | 0.817068 | 3.99E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene26574 | 0.810769 | 9.78E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene26574 | 0.826094 | 3.28E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene26574 | 0.812105 | 5.01E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene26574 | 0.831963 | 1.24E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene26574 | 0.820544 | 6.49E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene26574 | 0.812249 | 4.66E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene26574 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene26574 | 0.825553 | 4.40E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene26574 | 0.837973 | 3.79E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene26574 | 0.81869 | 1.72E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene26574 | 0.827093 | 1.89E-54 | -1.69E-46 |
| MS.gene050662 | MS.gene26574 | 0.802873 | 4.56E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene26574 | 0.813826 | 2.10E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene26574 | 0.831165 | 1.95E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene26574 | 0.831822 | 1.34E-55 | -1.69E-46 |
| MS.gene050876 | MS.gene26574 | 0.858914 | 5.94E-63 | -1.69E-46 |
| MS.gene050904 | MS.gene26574 | 0.870311 | 1.61E-66 | -1.69E-46 |
| MS.gene050986 | MS.gene26574 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene051268 | MS.gene26574 | 0.807868 | 4.10E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene26574 | 0.807515 | 4.87E-50 | -1.69E-46 |
| MS.gene051509 | MS.gene26574 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene052066 | MS.gene26574 | 0.812385 | 4.35E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene26574 | 0.812467 | 4.18E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene26574 | 0.829604 | 4.69E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene26574 | 0.838552 | 2.69E-57 | -1.69E-46 |
| MS.gene052822 | MS.gene26574 | 0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene053633 | MS.gene26574 | 0.817519 | 3.16E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene26574 | 0.821819 | 3.30E-53 | -1.69E-46 |
| MS.gene055634 | MS.gene26574 | 0.831569 | 1.55E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene26574 | 0.806027 | 1.00E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene26574 | 0.832111 | 1.14E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene26574 | 0.832356 | 9.90E-56 | -1.69E-46 |
| MS.gene055776 | MS.gene26574 | 0.82443 | 8.11E-54 | -1.69E-46 |
| MS.gene055849 | MS.gene26574 | 0.844478 | 7.37E-59 | -1.69E-46 |
| MS.gene05589 | MS.gene26574 | 0.824709 | 6.97E-54 | -1.69E-46 |
| MS.gene056046 | MS.gene26574 | 0.824999 | 5.95E-54 | -1.69E-46 |
| MS.gene056283 | MS.gene26574 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene056387 | MS.gene26574 | 0.813618 | 2.34E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene26574 | 0.849212 | 3.74E-60 | -1.69E-46 |
| MS.gene056510 | MS.gene26574 | 0.813199 | 2.89E-51 | -1.69E-46 |
| MS.gene056549 | MS.gene26574 | 0.837626 | 4.65E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene26574 | 0.812949 | 3.28E-51 | -1.69E-46 |
| MS.gene057687 | MS.gene26574 | 0.845196 | 4.72E-59 | -1.69E-46 |
| MS.gene057857 | MS.gene26574 | 0.801678 | 8.04E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene26574 | 0.835619 | 1.51E-56 | -1.69E-46 |
| MS.gene058171 | MS.gene26574 | -0.81866 | 1.75E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene26574 | -0.810241 | 1.27E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene26574 | -0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene26574 | -0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene26574 | 0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene26574 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene05912 | MS.gene26574 | 0.804284 | 2.33E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene26574 | 0.856698 | 2.70E-62 | -1.69E-46 |
| MS.gene06000 | MS.gene26574 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene060526 | MS.gene26574 | 0.822145 | 2.77E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene26574 | -0.841219 | 5.43E-58 | -1.69E-46 |
| MS.gene060703 | MS.gene26574 | 0.849252 | 3.64E-60 | -1.69E-46 |
| MS.gene060762 | MS.gene26574 | 0.835001 | 2.16E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene26574 | 0.833949 | 3.97E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene26574 | 0.801647 | 8.16E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene26574 | 0.846626 | 1.93E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054155 | MS.gene26574 | PPI |
| MS.gene26574 | MS.gene32324 | PPI |
| MS.gene26574 | MS.gene31844 | PPI |
| MS.gene26574 | MS.gene026689 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26574.t1 | MTR_5g024130 | 99.746 | 393 | 1 | 0 | 1 | 393 | 1 | 393 | 0.0 | 817 |
| MS.gene26574.t1 | MTR_4g087440 | 98.728 | 393 | 5 | 0 | 1 | 393 | 1 | 393 | 0.0 | 808 |
| MS.gene26574.t1 | MTR_1g029150 | 72.271 | 339 | 90 | 2 | 59 | 393 | 52 | 390 | 0.0 | 526 |
| MS.gene26574.t1 | MTR_3g090100 | 64.489 | 352 | 113 | 4 | 46 | 393 | 23 | 366 | 5.54e-169 | 477 |
| MS.gene26574.t1 | MTR_3g089025 | 65.782 | 339 | 113 | 2 | 57 | 393 | 32 | 369 | 1.50e-168 | 476 |
| MS.gene26574.t1 | MTR_3g090020 | 64.000 | 350 | 118 | 3 | 46 | 393 | 23 | 366 | 2.37e-166 | 470 |
| MS.gene26574.t1 | MTR_3g090010 | 65.970 | 335 | 111 | 2 | 59 | 391 | 35 | 368 | 5.22e-165 | 467 |
| MS.gene26574.t1 | MTR_3g090110 | 40.171 | 117 | 47 | 1 | 237 | 353 | 2 | 95 | 7.04e-22 | 90.1 |
| MS.gene26574.t1 | MTR_3g089980 | 47.423 | 97 | 38 | 1 | 257 | 353 | 7 | 90 | 1.20e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26574.t1 | AT2G43710 | 80.299 | 401 | 71 | 2 | 1 | 393 | 1 | 401 | 0.0 | 674 |
| MS.gene26574.t1 | AT2G43710 | 80.050 | 401 | 72 | 2 | 1 | 393 | 1 | 401 | 0.0 | 672 |
| MS.gene26574.t1 | AT3G02630 | 76.786 | 392 | 90 | 1 | 1 | 391 | 3 | 394 | 0.0 | 639 |
| MS.gene26574.t1 | AT5G16240 | 77.778 | 360 | 77 | 2 | 33 | 391 | 35 | 392 | 0.0 | 597 |
| MS.gene26574.t1 | AT3G02610 | 68.750 | 400 | 110 | 6 | 3 | 393 | 20 | 413 | 0.0 | 551 |
| MS.gene26574.t1 | AT3G02610 | 68.750 | 400 | 110 | 6 | 3 | 393 | 18 | 411 | 0.0 | 551 |
| MS.gene26574.t1 | AT5G16230 | 67.895 | 380 | 118 | 3 | 18 | 393 | 22 | 401 | 0.0 | 538 |
| MS.gene26574.t1 | AT3G02620 | 68.338 | 379 | 108 | 4 | 21 | 393 | 34 | 406 | 0.0 | 536 |
| MS.gene26574.t1 | AT3G02620 | 68.338 | 379 | 108 | 4 | 21 | 393 | 31 | 403 | 0.0 | 536 |
| MS.gene26574.t1 | AT1G43800 | 65.274 | 383 | 126 | 4 | 14 | 391 | 9 | 389 | 0.0 | 518 |
| MS.gene26574.t1 | AT5G16230 | 74.154 | 325 | 80 | 3 | 73 | 393 | 1 | 325 | 2.78e-180 | 504 |
| MS.gene26574.t1 | AT3G02620 | 73.394 | 327 | 81 | 3 | 73 | 393 | 1 | 327 | 3.47e-179 | 501 |
Find 129 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGATATACTTGAGTTTC+TGG | 0.154020 | 4.1:-22737278 | MS.gene26574:CDS |
| ATTTGAAAATTTCAATCTTC+TGG | 0.154979 | 4.1:+22738606 | None:intergenic |
| GCCCTACTCCTTGGGCTATT+TGG | 0.176215 | 4.1:-22738325 | MS.gene26574:CDS |
| TCCTCCAGCCTTCTGATTCT+TGG | 0.181095 | 4.1:+22737175 | None:intergenic |
| AACACTTCTCTACAGGTTTA+AGG | 0.197232 | 4.1:+22738546 | None:intergenic |
| GGTGGAAGCCATGACGAATT+TGG | 0.227957 | 4.1:+22739906 | None:intergenic |
| GCCGACATAACCGGACTTTC+AGG | 0.282345 | 4.1:-22737238 | MS.gene26574:CDS |
| CATTCAGTTGGATTCATGAT+AGG | 0.310680 | 4.1:-22737114 | MS.gene26574:CDS |
| TACTTGAACATGCACTTCTC+TGG | 0.313192 | 4.1:+22738646 | None:intergenic |
| CCAAACTATGCTTAATACTT+TGG | 0.323055 | 4.1:-22738375 | MS.gene26574:CDS |
| AGGTTTAAGGTGAGTCAATA+AGG | 0.334045 | 4.1:+22738559 | None:intergenic |
| AGATGATTACTTTGTTGTTC+TGG | 0.344575 | 4.1:-22738435 | MS.gene26574:CDS |
| TTAAGCATAGTTTGGTAAGT+AGG | 0.345744 | 4.1:+22738383 | None:intergenic |
| TTTCAAATCGTTGGAGGGTT+GGG | 0.350638 | 4.1:-22738591 | MS.gene26574:CDS |
| CCAAAGTATTAAGCATAGTT+TGG | 0.352890 | 4.1:+22738375 | None:intergenic |
| AATCCAACTGAATGCAAGTT+TGG | 0.355409 | 4.1:+22737123 | None:intergenic |
| TTTGAAAATTTCAATCTTCT+GGG | 0.358302 | 4.1:+22738607 | None:intergenic |
| GTGGAAGCCATGACGAATTT+GGG | 0.375597 | 4.1:+22739907 | None:intergenic |
| TGTTGTTCTGGTTGGAGATA+TGG | 0.377751 | 4.1:-22738423 | MS.gene26574:CDS |
| CTGGTGCCAGCCCTACTCCT+TGG | 0.386884 | 4.1:-22738334 | MS.gene26574:CDS |
| AAAGATAGTGGAAAAGCTAT+TGG | 0.403395 | 4.1:-22737458 | MS.gene26574:CDS |
| CTCCTTCTCTCTCCCTCAAA+TGG | 0.406762 | 4.1:-22739944 | MS.gene26574:CDS |
| CTGCCCGATCCTTCCTCAGA+TGG | 0.416238 | 4.1:-22738506 | MS.gene26574:CDS |
| ATGGCTTCCACCCTCCGTTC+TGG | 0.424747 | 4.1:-22739895 | MS.gene26574:CDS |
| CATCCAAACTTGCATTCAGT+TGG | 0.428488 | 4.1:-22737126 | MS.gene26574:CDS |
| AGAACAACAAAGTAATCATC+TGG | 0.438790 | 4.1:+22738437 | None:intergenic |
| GATATACTTGAGTTTCTGGT+TGG | 0.441237 | 4.1:-22737274 | MS.gene26574:CDS |
| TGGAAGGTGGCCGACATAAC+CGG | 0.441892 | 4.1:-22737247 | MS.gene26574:CDS |
| GGTTGCCAACACTTCTCTAC+AGG | 0.448685 | 4.1:+22738539 | None:intergenic |
| TGGTGCCAGCCCTACTCCTT+GGG | 0.450462 | 4.1:-22738333 | MS.gene26574:CDS |
| TTACCATTCCAGAGCCAATC+AGG | 0.453929 | 4.1:+22738195 | None:intergenic |
| AATAAGTATCTCTACTTGTC+CGG | 0.454382 | 4.1:-22738257 | MS.gene26574:CDS |
| TGTGTTTCCATGCGATATAA+AGG | 0.456327 | 4.1:+22737573 | None:intergenic |
| CAGCAGAATAGTTATCAAAC+AGG | 0.457192 | 4.1:+22737338 | None:intergenic |
| ATATACTTGAGTTTCTGGTT+GGG | 0.460993 | 4.1:-22737273 | MS.gene26574:CDS |
| GCCGCGTTCCTTAGCAAGCC+TGG | 0.462444 | 4.1:+22737549 | None:intergenic |
| AGAAGGAGGATGTTTGTGTA+GGG | 0.463532 | 4.1:+22739959 | None:intergenic |
| TCCAGCCTTCTGATTCTTGG+TGG | 0.465016 | 4.1:+22737178 | None:intergenic |
| TCGTCCCTCACCTGAAAGTC+CGG | 0.465890 | 4.1:+22737228 | None:intergenic |
| GATGGAGTTCGTGATGAAAC+TGG | 0.466056 | 4.1:-22738353 | MS.gene26574:CDS |
| TCTGCTGTTGCCCAGCGCAT+TGG | 0.472536 | 4.1:-22737322 | MS.gene26574:CDS |
| GGAACGCGGCGATTTGAAGT+TGG | 0.473114 | 4.1:-22737536 | MS.gene26574:CDS |
| TCCAAATAGCCCAAGGAGTA+GGG | 0.477229 | 4.1:+22738324 | None:intergenic |
| CAGTGTAGACTCCAATGCGC+TGG | 0.478141 | 4.1:+22737311 | None:intergenic |
| GTGTAGATAAAGCCAAGGTA+AGG | 0.480370 | 4.1:+22737616 | None:intergenic |
| GTTTCTGGTTGGGAGGTGGA+AGG | 0.480811 | 4.1:-22737263 | MS.gene26574:CDS |
| TACTTGAGTTTCTGGTTGGG+AGG | 0.483685 | 4.1:-22737270 | MS.gene26574:CDS |
| TATCGCATGGAAACACAGCC+AGG | 0.484282 | 4.1:-22737567 | MS.gene26574:CDS |
| TATCAAACAGGTTGTCATCT+CGG | 0.485495 | 4.1:+22737350 | None:intergenic |
| AGAGGTTGAAAATATTAAGA+AGG | 0.489403 | 4.1:-22738681 | MS.gene26574:CDS |
| AAGGCACAGGAGTATGTTTG+TGG | 0.492271 | 4.1:-22737205 | MS.gene26574:CDS |
| GAGAAGGAGGATGTTTGTGT+AGG | 0.492943 | 4.1:+22739958 | None:intergenic |
| ATTCAGTACCTGATTGGCTC+TGG | 0.492964 | 4.1:-22738203 | MS.gene26574:CDS |
| ATTTGAGACTGGCCATTTGA+GGG | 0.496342 | 4.1:+22739932 | None:intergenic |
| CTCCTTGGGCTATTTGGACA+AGG | 0.500836 | 4.1:-22738319 | MS.gene26574:CDS |
| GATTTGAGACTGGCCATTTG+AGG | 0.502339 | 4.1:+22739931 | None:intergenic |
| AAAGCAATAACTGTTCCATC+AGG | 0.503808 | 4.1:+22737427 | None:intergenic |
| TTGAGTTTCTGGTTGGGAGG+TGG | 0.503890 | 4.1:-22737267 | MS.gene26574:CDS |
| AAGACAATTCAGTACCTGAT+TGG | 0.503895 | 4.1:-22738209 | MS.gene26574:CDS |
| GACTGCTTACACAAAGATAG+TGG | 0.506240 | 4.1:-22737470 | MS.gene26574:CDS |
| CCATCATACATCAGGTGTGC+TGG | 0.507354 | 4.1:+22737373 | None:intergenic |
| ATTCAGTTGGATTCATGATA+GGG | 0.509293 | 4.1:-22737113 | MS.gene26574:CDS |
| ATCGTTGGAGGGTTGGGCTG+AGG | 0.511095 | 4.1:-22738585 | MS.gene26574:CDS |
| CATCTCGGCCATCATACATC+AGG | 0.513791 | 4.1:+22737365 | None:intergenic |
| ACTATGCTTAATACTTTGGA+TGG | 0.522020 | 4.1:-22738371 | MS.gene26574:CDS |
| GGGCTATTTGGACAAGGGCA+TGG | 0.524428 | 4.1:-22738313 | MS.gene26574:CDS |
| CTACACTTCATTTCAAGAGA+GGG | 0.526696 | 4.1:-22737599 | MS.gene26574:CDS |
| AATCCATCTGAGGAAGGATC+GGG | 0.533112 | 4.1:+22738503 | None:intergenic |
| ACTTGAACATGCACTTCTCT+GGG | 0.540588 | 4.1:+22738647 | None:intergenic |
| GCCACCAAGAATCAGAAGGC+TGG | 0.541195 | 4.1:-22737179 | MS.gene26574:CDS |
| GATTACTTTGTTGTTCTGGT+TGG | 0.542691 | 4.1:-22738431 | MS.gene26574:CDS |
| AATAGCCCAAGGAGTAGGGC+TGG | 0.546034 | 4.1:+22738328 | None:intergenic |
| AGGTGAGGGACGAAAGGCAC+AGG | 0.547789 | 4.1:-22737218 | MS.gene26574:CDS |
| GAATTTGGGAGATTTGAGAC+TGG | 0.549768 | 4.1:+22739921 | None:intergenic |
| GAATCCATCTGAGGAAGGAT+CGG | 0.550340 | 4.1:+22738502 | None:intergenic |
| TTGAAAATTTCAATCTTCTG+GGG | 0.552491 | 4.1:+22738608 | None:intergenic |
| ACCTGAAAGTCCGGTTATGT+CGG | 0.554587 | 4.1:+22737237 | None:intergenic |
| GTCCAAATAGCCCAAGGAGT+AGG | 0.558680 | 4.1:+22738323 | None:intergenic |
| TCTGGTTGGGAGGTGGAAGG+TGG | 0.560034 | 4.1:-22737260 | MS.gene26574:CDS |
| AGGGCGACCTTTATATCGCA+TGG | 0.560815 | 4.1:-22737580 | MS.gene26574:CDS |
| AAAATTTCAATCTTCTGGGG+AGG | 0.561159 | 4.1:+22738611 | None:intergenic |
| AGAGAAGTGTTGGCAACCAC+AGG | 0.562702 | 4.1:-22738534 | MS.gene26574:CDS |
| TTGAAGTTGGCTCAGATCTG+TGG | 0.563389 | 4.1:-22737523 | MS.gene26574:CDS |
| GTACCTGATTGGCTCTGGAA+TGG | 0.564475 | 4.1:-22738198 | MS.gene26574:intron |
| AGTGTAGACTCCAATGCGCT+GGG | 0.573443 | 4.1:+22737312 | None:intergenic |
| AAGTGAAGGAACTGAGAGAG+AGG | 0.573671 | 4.1:-22738472 | MS.gene26574:CDS |
| AGGCACAGGAGTATGTTTGT+GGG | 0.574102 | 4.1:-22737204 | MS.gene26574:CDS |
| AAGTATATCAGCATAGTCCT+TGG | 0.575108 | 4.1:+22737288 | None:intergenic |
| TTAAACCTGTAGAGAAGTGT+TGG | 0.579690 | 4.1:-22738544 | MS.gene26574:CDS |
| TCTACACTTCATTTCAAGAG+AGG | 0.581234 | 4.1:-22737600 | MS.gene26574:CDS |
| TTGTCTCATATCAACACGGC+CGG | 0.584046 | 4.1:+22738238 | None:intergenic |
| CTCATGGCGTTTCTCATCAG+AGG | 0.584747 | 4.1:+22737492 | None:intergenic |
| GAGGATGTTTGTGTAGGGAA+AGG | 0.586561 | 4.1:+22739964 | None:intergenic |
| GGCCATTTGAGGGAGAGAGA+AGG | 0.589016 | 4.1:+22739942 | None:intergenic |
| CATTTGAGGGAGAGAGAAGG+AGG | 0.590783 | 4.1:+22739945 | None:intergenic |
| TCTTCTGGGGAGGCATAGAG+TGG | 0.595890 | 4.1:+22738621 | None:intergenic |
| GAGAGCTTCAGCAAGAGCAA+AGG | 0.595934 | 4.1:-22737152 | MS.gene26574:CDS |
| AAACACAGCCAGGCTTGCTA+AGG | 0.597013 | 4.1:-22737557 | MS.gene26574:CDS |
| TGTAGATAAAGCCAAGGTAA+GGG | 0.598444 | 4.1:+22737617 | None:intergenic |
| CAAATCTCCCAAATTCGTCA+TGG | 0.598894 | 4.1:-22739914 | MS.gene26574:CDS |
| AATTTGATGGATAGGATCCT+CGG | 0.609645 | 4.1:-22737651 | MS.gene26574:intron |
| ACTTTCAGGTGAGGGACGAA+AGG | 0.610348 | 4.1:-22737224 | MS.gene26574:CDS |
| CCAGCACACCTGATGTATGA+TGG | 0.611997 | 4.1:-22737373 | MS.gene26574:CDS |
| CTATTGGAGATTGATCCTGA+TGG | 0.612852 | 4.1:-22737442 | MS.gene26574:CDS |
| GCCCTTGTCCAAATAGCCCA+AGG | 0.616169 | 4.1:+22738317 | None:intergenic |
| TCCTTGGGCTATTTGGACAA+GGG | 0.616511 | 4.1:-22738318 | MS.gene26574:CDS |
| TCTTCGAATCCATCTGAGGA+AGG | 0.617698 | 4.1:+22738497 | None:intergenic |
| GCCAGGCTTGCTAAGGAACG+CGG | 0.621905 | 4.1:-22737550 | MS.gene26574:CDS |
| AGTGAAGGAACTGAGAGAGA+GGG | 0.623958 | 4.1:-22738471 | MS.gene26574:CDS |
| ACTGAGAATAGCCCTTACCT+TGG | 0.627826 | 4.1:-22737628 | MS.gene26574:CDS |
| TGACTTGGAACCAGAACGGA+GGG | 0.629360 | 4.1:+22739885 | None:intergenic |
| ATGAAGTGTAGATAAAGCCA+AGG | 0.630791 | 4.1:+22737611 | None:intergenic |
| TTGCTCTTCGAATCCATCTG+AGG | 0.631251 | 4.1:+22738493 | None:intergenic |
| CAATTTGTCTCATATCAACA+CGG | 0.633578 | 4.1:+22738234 | None:intergenic |
| TCTTTGTGTAAGCAGTCTCA+TGG | 0.635579 | 4.1:+22737476 | None:intergenic |
| CTTGGAACCAGAACGGAGGG+TGG | 0.638218 | 4.1:+22739888 | None:intergenic |
| TGGATTCGAAGAGCAAGTGA+AGG | 0.638840 | 4.1:-22738486 | MS.gene26574:CDS |
| CATTGGAGTCTACACTGCCA+AGG | 0.641019 | 4.1:-22737305 | MS.gene26574:CDS |
| GGTTGCCACCAAGAATCAGA+AGG | 0.645168 | 4.1:-22737183 | MS.gene26574:CDS |
| ATAACCGGACTTTCAGGTGA+GGG | 0.664241 | 4.1:-22737232 | MS.gene26574:CDS |
| ACCAAGAATCAGAAGGCTGG+AGG | 0.675099 | 4.1:-22737176 | MS.gene26574:CDS |
| ATACTGACTTGGAACCAGAA+CGG | 0.677723 | 4.1:+22739881 | None:intergenic |
| TAAGGGCTATTCTCAGTCCG+AGG | 0.684437 | 4.1:+22737634 | None:intergenic |
| CATAACCGGACTTTCAGGTG+AGG | 0.689606 | 4.1:-22737233 | MS.gene26574:CDS |
| CTTCTGGGGAGGCATAGAGT+GGG | 0.692583 | 4.1:+22738622 | None:intergenic |
| TGAACATGCACTTCTCTGGG+AGG | 0.699562 | 4.1:+22738650 | None:intergenic |
| ACAGCTGAAGAAAATAGACA+TGG | 0.709949 | 4.1:-22738290 | MS.gene26574:CDS |
| GGATCGGGCAGAAAATCCTG+TGG | 0.717346 | 4.1:+22738518 | None:intergenic |
| CTGACTTGGAACCAGAACGG+AGG | 0.718153 | 4.1:+22739884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTGTAAATTAAATT+GGG | - | chr4.1:22739269-22739288 | MS.gene26574:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr4.1:22739233-22739252 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr4.1:22739234-22739253 | None:intergenic | 10.0% |
| !!! | GTATAATCAATTATAATTTT+TGG | - | chr4.1:22737798-22737817 | MS.gene26574:intron | 10.0% |
| !!! | TATGATATTGAATTAATTTT+TGG | - | chr4.1:22737337-22737356 | MS.gene26574:CDS | 10.0% |
| !! | AATTTAGTGTTATATTGTAT+TGG | + | chr4.1:22739169-22739188 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr4.1:22739232-22739251 | None:intergenic | 15.0% |
| !! | AGATTATCATAAAAAAGAAT+CGG | + | chr4.1:22738081-22738100 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4.1:22739168-22739187 | None:intergenic | 15.0% |
| !! | CAAAATTGTGTAAATTAAAT+TGG | - | chr4.1:22739268-22739287 | MS.gene26574:intron | 15.0% |
| !!! | TATTGAATTAATTTTTGGTT+TGG | - | chr4.1:22737342-22737361 | MS.gene26574:CDS | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr4.1:22739209-22739228 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr4.1:22739136-22739155 | None:intergenic | 20.0% |
| !! | ATATCATCAAAATGACAATT+TGG | + | chr4.1:22738192-22738211 | None:intergenic | 20.0% |
| !! | ATATCATTCATTTCTTTAAC+AGG | + | chr4.1:22738286-22738305 | None:intergenic | 20.0% |
| !! | ATTTGAAAATTTCAATCTTC+TGG | + | chr4.1:22738478-22738497 | None:intergenic | 20.0% |
| !! | CAATCAAAAAAACAAAACTA+AGG | + | chr4.1:22737681-22737700 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr4.1:22739135-22739154 | None:intergenic | 20.0% |
| !! | TGAATTGTTAATATTATTCG+TGG | + | chr4.1:22738242-22738261 | None:intergenic | 20.0% |
| !! | TGATGAATATTTACAGAAAT+TGG | - | chr4.1:22737900-22737919 | MS.gene26574:intron | 20.0% |
| !! | TTTGAAAATTTCAATCTTCT+GGG | + | chr4.1:22738477-22738496 | None:intergenic | 20.0% |
| !!! | AAAATTACAGAACTTCATTT+TGG | - | chr4.1:22737995-22738014 | MS.gene26574:intron | 20.0% |
| !!! | AATACTGAATTTGCTTAAAA+TGG | - | chr4.1:22738983-22739002 | MS.gene26574:intron | 20.0% |
| !!! | CTTTTTTATGATAATCTTGT+TGG | - | chr4.1:22738084-22738103 | MS.gene26574:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr4.1:22739099-22739118 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGATTGTATTCTA+TGG | - | chr4.1:22737688-22737707 | MS.gene26574:intron | 20.0% |
| !!! | TATAATTTTTGGAACTTGTT+GGG | - | chr4.1:22737809-22737828 | MS.gene26574:intron | 20.0% |
| !!! | TGTTTATATCTCTCTAATTT+TGG | - | chr4.1:22739399-22739418 | MS.gene26574:intron | 20.0% |
| !!! | TTATAATTTTTGGAACTTGT+TGG | - | chr4.1:22737808-22737827 | MS.gene26574:intron | 20.0% |
| ! | AAGATACTAGAGAAAAACAT+AGG | + | chr4.1:22737637-22737656 | None:intergenic | 25.0% |
| ! | AGAGGTTGAAAATATTAAGA+AGG | - | chr4.1:22738400-22738419 | MS.gene26574:CDS | 25.0% |
| ! | AGATACTAGAGAAAAACATA+GGG | + | chr4.1:22737636-22737655 | None:intergenic | 25.0% |
| ! | CTTCGCTATAAATTCAATTT+GGG | - | chr4.1:22737735-22737754 | MS.gene26574:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr4.1:22739210-22739229 | None:intergenic | 25.0% |
| ! | TAAAAAAGAATCGGTAAACA+TGG | + | chr4.1:22738072-22738091 | None:intergenic | 25.0% |
| ! | TGAATGATATTGATACAATC+CGG | - | chr4.1:22738296-22738315 | MS.gene26574:CDS | 25.0% |
| ! | TGAGTCAAAAATGAATTCAA+GGG | + | chr4.1:22739342-22739361 | None:intergenic | 25.0% |
| ! | TTGAAAATTTCAATCTTCTG+GGG | + | chr4.1:22738476-22738495 | None:intergenic | 25.0% |
| ! | TTGAGTCAAAAATGAATTCA+AGG | + | chr4.1:22739343-22739362 | None:intergenic | 25.0% |
| ! | TTGATTAACCTATGCATTTA+AGG | - | chr4.1:22738142-22738161 | MS.gene26574:intron | 25.0% |
| ! | TTGTGTAAATTAAATTGGGA+CGG | - | chr4.1:22739273-22739292 | MS.gene26574:intron | 25.0% |
| ! | TTTATATTTACTTTGCAGAG+AGG | - | chr4.1:22738382-22738401 | MS.gene26574:CDS | 25.0% |
| !! | GATTGAAATTTTCAAATCGT+TGG | - | chr4.1:22738481-22738500 | MS.gene26574:CDS | 25.0% |
| !!! | ATCAAATTTTAATGAGCCAT+TGG | + | chr4.1:22737953-22737972 | None:intergenic | 25.0% |
| !!! | CATTTTGATGATATCTACAT+GGG | - | chr4.1:22738198-22738217 | MS.gene26574:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr4.1:22739100-22739119 | None:intergenic | 25.0% |
| !!! | TCATTTTGATGATATCTACA+TGG | - | chr4.1:22738197-22738216 | MS.gene26574:intron | 25.0% |
| !!! | TTTTGCGAATTGATTTATAC+CGG | + | chr4.1:22738318-22738337 | None:intergenic | 25.0% |
| AAGATCATCAATAGATGTCT+AGG | + | chr4.1:22738915-22738934 | None:intergenic | 30.0% | |
| AATAAGTATCTCTACTTGTC+CGG | - | chr4.1:22738824-22738843 | MS.gene26574:intron | 30.0% | |
| AATGCACGATGAATTGAAAA+AGG | + | chr4.1:22737241-22737260 | None:intergenic | 30.0% | |
| ACTATGCTTAATACTTTGGA+TGG | - | chr4.1:22738710-22738729 | MS.gene26574:intron | 30.0% | |
| AGAACAACAAAGTAATCATC+TGG | + | chr4.1:22738647-22738666 | None:intergenic | 30.0% | |
| AGAACGTTGTGAATATAAGT+TGG | + | chr4.1:22737493-22737512 | None:intergenic | 30.0% | |
| ATCAAATCAAATCAAGCAGA+TGG | + | chr4.1:22737844-22737863 | None:intergenic | 30.0% | |
| ATGCACGATGAATTGAAAAA+GGG | + | chr4.1:22737240-22737259 | None:intergenic | 30.0% | |
| ATTAACCTATGCATTTAAGG+TGG | - | chr4.1:22738145-22738164 | MS.gene26574:intron | 30.0% | |
| ATTCAGTTGGATTCATGATA+GGG | - | chr4.1:22739968-22739987 | MS.gene26574:CDS | 30.0% | |
| CAAAAGCAAGATCATTTGAA+TGG | - | chr4.1:22738333-22738352 | MS.gene26574:CDS | 30.0% | |
| CAATTTGTCTCATATCAACA+CGG | + | chr4.1:22738850-22738869 | None:intergenic | 30.0% | |
| CCAAACTATGCTTAATACTT+TGG | - | chr4.1:22738706-22738725 | MS.gene26574:intron | 30.0% | |
| GCTTCGCTATAAATTCAATT+TGG | - | chr4.1:22737734-22737753 | MS.gene26574:intron | 30.0% | |
| TGAAAAAGGGATCTGAAAAA+GGG | + | chr4.1:22737227-22737246 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr4.1:22739225-22739244 | None:intergenic | 30.0% | |
| TTAAGCATAGTTTGGTAAGT+AGG | + | chr4.1:22738701-22738720 | None:intergenic | 30.0% | |
| TTGAAAAAGGGATCTGAAAA+AGG | + | chr4.1:22737228-22737247 | None:intergenic | 30.0% | |
| TTTGGATTGATGGAATTTGA+TGG | - | chr4.1:22739417-22739436 | MS.gene26574:intron | 30.0% | |
| ! | ATTGATGGAATTTGATGGAT+AGG | - | chr4.1:22739422-22739441 | MS.gene26574:intron | 30.0% |
| ! | CCAAAGTATTAAGCATAGTT+TGG | + | chr4.1:22738709-22738728 | None:intergenic | 30.0% |
| ! | GAAATTTTCAAATCGTTGGA+GGG | - | chr4.1:22738485-22738504 | MS.gene26574:CDS | 30.0% |
| ! | TCTCTCTAATTTTGGATTGA+TGG | - | chr4.1:22739407-22739426 | MS.gene26574:intron | 30.0% |
| ! | TGAAATTTTCAAATCGTTGG+AGG | - | chr4.1:22738484-22738503 | MS.gene26574:CDS | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr4.1:22739122-22739141 | None:intergenic | 30.0% |
| !! | AAAGATAGTGGAAAAGCTAT+TGG | - | chr4.1:22739623-22739642 | MS.gene26574:intron | 30.0% |
| !! | AATTTTAATGAGCCATTGGA+CGG | + | chr4.1:22737949-22737968 | None:intergenic | 30.0% |
| !! | AGATGATTACTTTGTTGTTC+TGG | - | chr4.1:22738646-22738665 | MS.gene26574:CDS | 30.0% |
| !! | ATATACTTGAGTTTCTGGTT+GGG | - | chr4.1:22739808-22739827 | MS.gene26574:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr4.1:22739121-22739140 | None:intergenic | 30.0% |
| !!! | TTTTTGGTTTGGTGAAATGA+TGG | - | chr4.1:22737353-22737372 | MS.gene26574:CDS | 30.0% |
| AAAGCAATAACTGTTCCATC+AGG | + | chr4.1:22739657-22739676 | None:intergenic | 35.0% | |
| AACACTTCTCTACAGGTTTA+AGG | + | chr4.1:22738538-22738557 | None:intergenic | 35.0% | |
| AAGACAATTCAGTACCTGAT+TGG | - | chr4.1:22738872-22738891 | MS.gene26574:intron | 35.0% | |
| AAGCAAGATCATTTGAATGG+TGG | - | chr4.1:22738336-22738355 | MS.gene26574:CDS | 35.0% | |
| AAGTATATCAGCATAGTCCT+TGG | + | chr4.1:22739796-22739815 | None:intergenic | 35.0% | |
| AATCCAACTGAATGCAAGTT+TGG | + | chr4.1:22739961-22739980 | None:intergenic | 35.0% | |
| ACAGCTGAAGAAAATAGACA+TGG | - | chr4.1:22738791-22738810 | MS.gene26574:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr4.1:22739086-22739105 | None:intergenic | 35.0% | |
| ATGAAGTGTAGATAAAGCCA+AGG | + | chr4.1:22739473-22739492 | None:intergenic | 35.0% | |
| CACAGAGATTCATGTTGAAT+AGG | + | chr4.1:22737777-22737796 | None:intergenic | 35.0% | |
| CAGCAGAATAGTTATCAAAC+AGG | + | chr4.1:22739746-22739765 | None:intergenic | 35.0% | |
| CATTCAGTTGGATTCATGAT+AGG | - | chr4.1:22739967-22739986 | MS.gene26574:CDS | 35.0% | |
| CTACACTTCATTTCAAGAGA+GGG | - | chr4.1:22739482-22739501 | MS.gene26574:intron | 35.0% | |
| TATCAAACAGGTTGTCATCT+CGG | + | chr4.1:22739734-22739753 | None:intergenic | 35.0% | |
| TCTACACTTCATTTCAAGAG+AGG | - | chr4.1:22739481-22739500 | MS.gene26574:intron | 35.0% | |
| TGCTGATATACTTGAGTTTC+TGG | - | chr4.1:22739803-22739822 | MS.gene26574:intron | 35.0% | |
| TGTAAATTAAATTGGGACGG+AGG | - | chr4.1:22739276-22739295 | MS.gene26574:intron | 35.0% | |
| TGTAGATAAAGCCAAGGTAA+GGG | + | chr4.1:22739467-22739486 | None:intergenic | 35.0% | |
| TGTGTTTCCATGCGATATAA+AGG | + | chr4.1:22739511-22739530 | None:intergenic | 35.0% | |
| ! | AAAATTTCAATCTTCTGGGG+AGG | + | chr4.1:22738473-22738492 | None:intergenic | 35.0% |
| ! | AATTTGATGGATAGGATCCT+CGG | - | chr4.1:22739430-22739449 | MS.gene26574:intron | 35.0% |
| ! | AGGTTTAAGGTGAGTCAATA+AGG | + | chr4.1:22738525-22738544 | None:intergenic | 35.0% |
| ! | GCTTTGCATGTATAGTCTTA+TGG | - | chr4.1:22737415-22737434 | MS.gene26574:CDS | 35.0% |
| ! | TGAAAAAGGGAATACTGACT+TGG | + | chr4.1:22737214-22737233 | None:intergenic | 35.0% |
| ! | TTAAACCTGTAGAGAAGTGT+TGG | - | chr4.1:22738537-22738556 | MS.gene26574:CDS | 35.0% |
| !! | GATATACTTGAGTTTCTGGT+TGG | - | chr4.1:22739807-22739826 | MS.gene26574:intron | 35.0% |
| !! | GATTACTTTGTTGTTCTGGT+TGG | - | chr4.1:22738650-22738669 | MS.gene26574:CDS | 35.0% |
| !! | TGCATGTATAGTCTTATGGT+TGG | - | chr4.1:22737419-22737438 | MS.gene26574:CDS | 35.0% |
| AATTTATAGCGAAGCCACCT+AGG | + | chr4.1:22737729-22737748 | None:intergenic | 40.0% | |
| ACTTGAACATGCACTTCTCT+GGG | + | chr4.1:22738437-22738456 | None:intergenic | 40.0% | |
| AGAAGGAGGATGTTTGTGTA+GGG | + | chr4.1:22737125-22737144 | None:intergenic | 40.0% | |
| ATAAACGCATATTCCCTAGG+TGG | - | chr4.1:22737712-22737731 | MS.gene26574:intron | 40.0% | |
| ATTTATAGCGAAGCCACCTA+GGG | + | chr4.1:22737728-22737747 | None:intergenic | 40.0% | |
| CAAATCTCCCAAATTCGTCA+TGG | - | chr4.1:22737167-22737186 | MS.gene26574:CDS | 40.0% | |
| CATCCAAACTTGCATTCAGT+TGG | - | chr4.1:22739955-22739974 | MS.gene26574:CDS | 40.0% | |
| CTATTGGAGATTGATCCTGA+TGG | - | chr4.1:22739639-22739658 | MS.gene26574:intron | 40.0% | |
| CTGCAGTCACACAAAATTGA+CGG | + | chr4.1:22738022-22738041 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr4.1:22739085-22739104 | None:intergenic | 40.0% | |
| GACTGCTTACACAAAGATAG+TGG | - | chr4.1:22739611-22739630 | MS.gene26574:intron | 40.0% | |
| GGATATTCAGGATGCTTGTT+TGG | - | chr4.1:22737445-22737464 | MS.gene26574:CDS | 40.0% | |
| GGTATAAACGCATATTCCCT+AGG | - | chr4.1:22737709-22737728 | MS.gene26574:intron | 40.0% | |
| GTGTAGATAAAGCCAAGGTA+AGG | + | chr4.1:22739468-22739487 | None:intergenic | 40.0% | |
| TACCACCACCTTAAATGCAT+AGG | + | chr4.1:22738153-22738172 | None:intergenic | 40.0% | |
| TACTTGAACATGCACTTCTC+TGG | + | chr4.1:22738438-22738457 | None:intergenic | 40.0% | |
| TCTTTGTGTAAGCAGTCTCA+TGG | + | chr4.1:22739608-22739627 | None:intergenic | 40.0% | |
| TTTCAAATCGTTGGAGGGTT+GGG | - | chr4.1:22738490-22738509 | MS.gene26574:CDS | 40.0% | |
| ! | AACCTATGCATTTAAGGTGG+TGG | - | chr4.1:22738148-22738167 | MS.gene26574:intron | 40.0% |
| ! | ATTTGAGACTGGCCATTTGA+GGG | + | chr4.1:22737152-22737171 | None:intergenic | 40.0% |
| ! | GAATTTGGGAGATTTGAGAC+TGG | + | chr4.1:22737163-22737182 | None:intergenic | 40.0% |
| ! | GTTTGGTGAAATGATGGTTG+GGG | - | chr4.1:22737359-22737378 | MS.gene26574:CDS | 40.0% |
| ! | TGTTGTTCTGGTTGGAGATA+TGG | - | chr4.1:22738658-22738677 | MS.gene26574:CDS | 40.0% |
| ! | TTTTCAAATCGTTGGAGGGT+TGG | - | chr4.1:22738489-22738508 | MS.gene26574:CDS | 40.0% |
| !! | ATACTGACTTGGAACCAGAA+CGG | + | chr4.1:22737203-22737222 | None:intergenic | 40.0% |
| !! | GGTTTGGTGAAATGATGGTT+GGG | - | chr4.1:22737358-22737377 | MS.gene26574:CDS | 40.0% |
| !! | GTATAGTCTTATGGTTGGTG+AGG | - | chr4.1:22737424-22737443 | MS.gene26574:CDS | 40.0% |
| !! | TATGGTTGGTGAGGATATTC+AGG | - | chr4.1:22737433-22737452 | MS.gene26574:CDS | 40.0% |
| !! | TGGTTTGGTGAAATGATGGT+TGG | - | chr4.1:22737357-22737376 | MS.gene26574:CDS | 40.0% |
| !! | TTGCTTTTGCTGACATGATG+AGG | - | chr4.1:22739670-22739689 | MS.gene26574:intron | 40.0% |
| AAGTGAAGGAACTGAGAGAG+AGG | - | chr4.1:22738609-22738628 | MS.gene26574:CDS | 45.0% | |
| AATCCATCTGAGGAAGGATC+GGG | + | chr4.1:22738581-22738600 | None:intergenic | 45.0% | |
| ACCTGAAAGTCCGGTTATGT+CGG | + | chr4.1:22739847-22739866 | None:intergenic | 45.0% | |
| ACTGAGAATAGCCCTTACCT+TGG | - | chr4.1:22739453-22739472 | MS.gene26574:intron | 45.0% | |
| AGAATCGGTAAACATGGACC+CGG | + | chr4.1:22738066-22738085 | None:intergenic | 45.0% | |
| AGTGAAGGAACTGAGAGAGA+GGG | - | chr4.1:22738610-22738629 | MS.gene26574:CDS | 45.0% | |
| CAGTGACACATTGATGCATC+AGG | + | chr4.1:22739037-22739056 | None:intergenic | 45.0% | |
| GAATCCATCTGAGGAAGGAT+CGG | + | chr4.1:22738582-22738601 | None:intergenic | 45.0% | |
| GAGAAGGAGGATGTTTGTGT+AGG | + | chr4.1:22737126-22737145 | None:intergenic | 45.0% | |
| GAGGATGTTTGTGTAGGGAA+AGG | + | chr4.1:22737120-22737139 | None:intergenic | 45.0% | |
| GATGGAGTTCGTGATGAAAC+TGG | - | chr4.1:22738728-22738747 | MS.gene26574:intron | 45.0% | |
| GTGGAAGCCATGACGAATTT+GGG | + | chr4.1:22737177-22737196 | None:intergenic | 45.0% | |
| TCATACAGTCACGATGTTGG+TGG | - | chr4.1:22737923-22737942 | MS.gene26574:intron | 45.0% | |
| TCCAAATAGCCCAAGGAGTA+GGG | + | chr4.1:22738760-22738779 | None:intergenic | 45.0% | |
| TCCTTGGGCTATTTGGACAA+GGG | - | chr4.1:22738763-22738782 | MS.gene26574:intron | 45.0% | |
| TCTTCGAATCCATCTGAGGA+AGG | + | chr4.1:22738587-22738606 | None:intergenic | 45.0% | |
| TGGATTCGAAGAGCAAGTGA+AGG | - | chr4.1:22738595-22738614 | MS.gene26574:CDS | 45.0% | |
| TGGTCATACAGTCACGATGT+TGG | - | chr4.1:22737920-22737939 | MS.gene26574:intron | 45.0% | |
| TTACCATTCCAGAGCCAATC+AGG | + | chr4.1:22738889-22738908 | None:intergenic | 45.0% | |
| TTGCTCTTCGAATCCATCTG+AGG | + | chr4.1:22738591-22738610 | None:intergenic | 45.0% | |
| TTGTCTCATATCAACACGGC+CGG | + | chr4.1:22738846-22738865 | None:intergenic | 45.0% | |
| TTTGCTCACTGCAGCAAATC+CGG | - | chr4.1:22738044-22738063 | MS.gene26574:intron | 45.0% | |
| ! | AAGGCACAGGAGTATGTTTG+TGG | - | chr4.1:22739876-22739895 | MS.gene26574:intron | 45.0% |
| ! | AGGCACAGGAGTATGTTTGT+GGG | - | chr4.1:22739877-22739896 | MS.gene26574:intron | 45.0% |
| ! | ATAACCGGACTTTCAGGTGA+GGG | - | chr4.1:22739849-22739868 | MS.gene26574:intron | 45.0% |
| ! | ATTCAGTACCTGATTGGCTC+TGG | - | chr4.1:22738878-22738897 | MS.gene26574:intron | 45.0% |
| ! | CGTCAATTTTGTGTGACTGC+AGG | - | chr4.1:22738020-22738039 | MS.gene26574:intron | 45.0% |
| ! | GATTTGAGACTGGCCATTTG+AGG | + | chr4.1:22737153-22737172 | None:intergenic | 45.0% |
| ! | TTGAAGTTGGCTCAGATCTG+TGG | - | chr4.1:22739558-22739577 | MS.gene26574:intron | 45.0% |
| !! | TACTTGAGTTTCTGGTTGGG+AGG | - | chr4.1:22739811-22739830 | MS.gene26574:intron | 45.0% |
| !! | AAAAAAAAATAAAAAAAAAG+TGG | + | chr4.1:22737561-22737580 | None:intergenic | 5.0% |
| ACCAAGAATCAGAAGGCTGG+AGG | - | chr4.1:22739905-22739924 | MS.gene26574:CDS | 50.0% | |
| AGGGCGACCTTTATATCGCA+TGG | - | chr4.1:22739501-22739520 | MS.gene26574:intron | 50.0% | |
| AGTGTAGACTCCAATGCGCT+GGG | + | chr4.1:22739772-22739791 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr4.1:22739081-22739100 | None:intergenic | 50.0% | |
| ATTTCATACTCCCTCCGTCC+CGG | - | chr4.1:22739064-22739083 | MS.gene26574:intron | 50.0% | |
| CATCTCGGCCATCATACATC+AGG | + | chr4.1:22739719-22739738 | None:intergenic | 50.0% | |
| CATTGGAGTCTACACTGCCA+AGG | - | chr4.1:22739776-22739795 | MS.gene26574:intron | 50.0% | |
| CATTTGAGGGAGAGAGAAGG+AGG | + | chr4.1:22737139-22737158 | None:intergenic | 50.0% | |
| CCAGCACACCTGATGTATGA+TGG | - | chr4.1:22739708-22739727 | MS.gene26574:intron | 50.0% | |
| CCATCATACATCAGGTGTGC+TGG | + | chr4.1:22739711-22739730 | None:intergenic | 50.0% | |
| CTCATGGCGTTTCTCATCAG+AGG | + | chr4.1:22739592-22739611 | None:intergenic | 50.0% | |
| CTCCTTCTCTCTCCCTCAAA+TGG | - | chr4.1:22737137-22737156 | MS.gene26574:CDS | 50.0% | |
| CTCCTTGGGCTATTTGGACA+AGG | - | chr4.1:22738762-22738781 | MS.gene26574:intron | 50.0% | |
| GAGAGCTTCAGCAAGAGCAA+AGG | - | chr4.1:22739929-22739948 | MS.gene26574:CDS | 50.0% | |
| GGTGGAAGCCATGACGAATT+TGG | + | chr4.1:22737178-22737197 | None:intergenic | 50.0% | |
| GGTTGCCAACACTTCTCTAC+AGG | + | chr4.1:22738545-22738564 | None:intergenic | 50.0% | |
| GGTTGCCACCAAGAATCAGA+AGG | - | chr4.1:22739898-22739917 | MS.gene26574:CDS | 50.0% | |
| GTCCAAATAGCCCAAGGAGT+AGG | + | chr4.1:22738761-22738780 | None:intergenic | 50.0% | |
| TAAGGGCTATTCTCAGTCCG+AGG | + | chr4.1:22739450-22739469 | None:intergenic | 50.0% | |
| TATCGCATGGAAACACAGCC+AGG | - | chr4.1:22739514-22739533 | MS.gene26574:intron | 50.0% | |
| TCCAGCCTTCTGATTCTTGG+TGG | + | chr4.1:22739906-22739925 | None:intergenic | 50.0% | |
| TCCTCCAGCCTTCTGATTCT+TGG | + | chr4.1:22739909-22739928 | None:intergenic | 50.0% | |
| TGAACATGCACTTCTCTGGG+AGG | + | chr4.1:22738434-22738453 | None:intergenic | 50.0% | |
| TGGTGAAATGATGGTTGGGG+TGG | - | chr4.1:22737362-22737381 | MS.gene26574:CDS | 50.0% | |
| TTGCTCACTGCAGCAAATCC+GGG | - | chr4.1:22738045-22738064 | MS.gene26574:intron | 50.0% | |
| ! | ACTTTCAGGTGAGGGACGAA+AGG | - | chr4.1:22739857-22739876 | MS.gene26574:intron | 50.0% |
| ! | CATAACCGGACTTTCAGGTG+AGG | - | chr4.1:22739848-22739867 | MS.gene26574:intron | 50.0% |
| ! | TGACTTGGAACCAGAACGGA+GGG | + | chr4.1:22737199-22737218 | None:intergenic | 50.0% |
| !! | AAACACAGCCAGGCTTGCTA+AGG | - | chr4.1:22739524-22739543 | MS.gene26574:intron | 50.0% |
| !! | AGAGAAGTGTTGGCAACCAC+AGG | - | chr4.1:22738547-22738566 | MS.gene26574:CDS | 50.0% |
| !! | GTACCTGATTGGCTCTGGAA+TGG | - | chr4.1:22738883-22738902 | MS.gene26574:intron | 50.0% |
| !! | TTGAGTTTCTGGTTGGGAGG+TGG | - | chr4.1:22739814-22739833 | MS.gene26574:intron | 50.0% |
| AATAGCCCAAGGAGTAGGGC+TGG | + | chr4.1:22738756-22738775 | None:intergenic | 55.0% | |
| CAGTGTAGACTCCAATGCGC+TGG | + | chr4.1:22739773-22739792 | None:intergenic | 55.0% | |
| GCCACCAAGAATCAGAAGGC+TGG | - | chr4.1:22739902-22739921 | MS.gene26574:CDS | 55.0% | |
| GCCCTACTCCTTGGGCTATT+TGG | - | chr4.1:22738756-22738775 | MS.gene26574:intron | 55.0% | |
| GCCCTTGTCCAAATAGCCCA+AGG | + | chr4.1:22738767-22738786 | None:intergenic | 55.0% | |
| GCCGACATAACCGGACTTTC+AGG | - | chr4.1:22739843-22739862 | MS.gene26574:intron | 55.0% | |
| GGATCGGGCAGAAAATCCTG+TGG | + | chr4.1:22738566-22738585 | None:intergenic | 55.0% | |
| GGCCATTTGAGGGAGAGAGA+AGG | + | chr4.1:22737142-22737161 | None:intergenic | 55.0% | |
| GGGCTATTTGGACAAGGGCA+TGG | - | chr4.1:22738768-22738787 | MS.gene26574:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr4.1:22739077-22739096 | None:intergenic | 55.0% | |
| TCGTCCCTCACCTGAAAGTC+CGG | + | chr4.1:22739856-22739875 | None:intergenic | 55.0% | |
| TGGAAGGTGGCCGACATAAC+CGG | - | chr4.1:22739834-22739853 | MS.gene26574:intron | 55.0% | |
| ! | CTTCTGGGGAGGCATAGAGT+GGG | + | chr4.1:22738462-22738481 | None:intergenic | 55.0% |
| ! | GGAACGCGGCGATTTGAAGT+TGG | - | chr4.1:22739545-22739564 | MS.gene26574:intron | 55.0% |
| ! | TCTTCTGGGGAGGCATAGAG+TGG | + | chr4.1:22738463-22738482 | None:intergenic | 55.0% |
| !! | CTGACTTGGAACCAGAACGG+AGG | + | chr4.1:22737200-22737219 | None:intergenic | 55.0% |
| !! | GTTTCTGGTTGGGAGGTGGA+AGG | - | chr4.1:22739818-22739837 | MS.gene26574:intron | 55.0% |
| ATCGTTGGAGGGTTGGGCTG+AGG | - | chr4.1:22738496-22738515 | MS.gene26574:CDS | 60.0% | |
| ATGGCTTCCACCCTCCGTTC+TGG | - | chr4.1:22737186-22737205 | MS.gene26574:CDS | 60.0% | |
| CTGCCCGATCCTTCCTCAGA+TGG | - | chr4.1:22738575-22738594 | MS.gene26574:CDS | 60.0% | |
| CTTGGAACCAGAACGGAGGG+TGG | + | chr4.1:22737196-22737215 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr4.1:22739078-22739097 | None:intergenic | 60.0% | |
| TCTGCTGTTGCCCAGCGCAT+TGG | - | chr4.1:22739759-22739778 | MS.gene26574:intron | 60.0% | |
| TCTGGTTGGGAGGTGGAAGG+TGG | - | chr4.1:22739821-22739840 | MS.gene26574:intron | 60.0% | |
| ! | AGGTGAGGGACGAAAGGCAC+AGG | - | chr4.1:22739863-22739882 | MS.gene26574:intron | 60.0% |
| ! | TGGTGCCAGCCCTACTCCTT+GGG | - | chr4.1:22738748-22738767 | MS.gene26574:intron | 60.0% |
| !! | CGATGTTGGTGGCCGTCCAA+TGG | - | chr4.1:22737934-22737953 | MS.gene26574:intron | 60.0% |
| !! | GCCAGGCTTGCTAAGGAACG+CGG | - | chr4.1:22739531-22739550 | MS.gene26574:intron | 60.0% |
| GCCGCGTTCCTTAGCAAGCC+TGG | + | chr4.1:22739535-22739554 | None:intergenic | 65.0% | |
| ! | CTGGTGCCAGCCCTACTCCT+TGG | - | chr4.1:22738747-22738766 | MS.gene26574:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22737099 | 22740004 | 22737099 | ID=MS.gene26574 |
| chr4.1 | mRNA | 22737099 | 22740004 | 22737099 | ID=MS.gene26574.t1;Parent=MS.gene26574 |
| chr4.1 | exon | 22739889 | 22740004 | 22739889 | ID=MS.gene26574.t1.exon1;Parent=MS.gene26574.t1 |
| chr4.1 | CDS | 22739889 | 22740004 | 22739889 | ID=cds.MS.gene26574.t1;Parent=MS.gene26574.t1 |
| chr4.1 | exon | 22738199 | 22738703 | 22738199 | ID=MS.gene26574.t1.exon2;Parent=MS.gene26574.t1 |
| chr4.1 | CDS | 22738199 | 22738703 | 22738199 | ID=cds.MS.gene26574.t1;Parent=MS.gene26574.t1 |
| chr4.1 | exon | 22737099 | 22737659 | 22737099 | ID=MS.gene26574.t1.exon3;Parent=MS.gene26574.t1 |
| chr4.1 | CDS | 22737099 | 22737659 | 22737099 | ID=cds.MS.gene26574.t1;Parent=MS.gene26574.t1 |
| Gene Sequence |
| Protein sequence |
