AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026880.t1 MTR_2g075760 78.916 332 65 3 1 330 1 329 0.0 527
MS.gene026880.t1 MTR_2g075770 75.305 328 77 2 1 327 1 325 0.0 513
MS.gene026880.t1 MTR_2g075780 76.524 328 73 2 1 327 1 325 0.0 513
MS.gene026880.t1 MTR_2g075780 68.902 328 69 3 1 327 1 296 1.27e-159 448
MS.gene026880.t1 MTR_2g075790 64.157 332 46 6 1 331 1 260 1.14e-137 391
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026880.t1 AT1G78680 64.024 328 115 2 1 327 1 326 1.09e-151 429
MS.gene026880.t1 AT1G78680 64.024 328 115 2 1 327 1 326 2.36e-151 429
MS.gene026880.t1 AT1G78660 62.195 328 121 3 1 327 1 326 6.10e-147 418
MS.gene026880.t1 AT1G78660 65.359 306 103 3 23 327 24 327 8.77e-147 417
MS.gene026880.t1 AT1G78660 65.359 306 103 3 23 327 24 327 8.77e-147 417
MS.gene026880.t1 AT1G78670 59.502 321 117 4 20 327 17 337 1.25e-138 397

Find 80 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGCAACTGGTCTGTTTA+AGG 0.149969 2.3:+21064195 None:intergenic
AACTGTTGGAAGAATATTTA+AGG 0.177601 2.3:-21067180 MS.gene026880:intron
CCCAACTTCTTTAACAAGTT+TGG 0.213316 2.3:+21065540 None:intergenic
CAGAAGCTTGAATTGGTAAA+TGG 0.248266 2.3:-21067248 MS.gene026880:CDS
TCCTCTGTGTGTGGAATTCT+TGG 0.268295 2.3:+21064736 None:intergenic
CCTAAGCAGATGGCATATAA+TGG 0.282374 2.3:+21066423 None:intergenic
TCCAAACTTGTTAAAGAAGT+TGG 0.306340 2.3:-21065541 MS.gene026880:CDS
GAATCACAGTGGAGTTGATC+TGG 0.336219 2.3:+21068162 None:intergenic
TTTGTTCATGCAGAAAGTTT+TGG 0.342051 2.3:-21066472 MS.gene026880:intron
CGCCTCTTATGTTAAATTTG+TGG 0.347933 2.3:-21068004 MS.gene026880:CDS
CCATTATATGCCATCTGCTT+AGG 0.354697 2.3:-21066423 MS.gene026880:CDS
TTGATCTGGGAGAAGGATTC+CGG 0.361575 2.3:+21068176 None:intergenic
AAAATTTAAAGCAGAAAATC+AGG 0.366992 2.3:-21065911 MS.gene026880:CDS
TCAAACAATTCTTGAGCAAC+TGG 0.372625 2.3:+21064184 None:intergenic
CTCTACTACCAGCCAGTCAT+TGG 0.375596 2.3:-21068096 MS.gene026880:CDS
ATAATTGCAGAAGCTTGAAT+TGG 0.378847 2.3:-21067255 MS.gene026880:intron
GCGGAGAATGCAAACATAGA+AGG 0.380015 2.3:-21065871 MS.gene026880:CDS
CTCCACAAATTTAACATAAG+AGG 0.408806 2.3:+21068002 None:intergenic
CTAAGCAGATGGCATATAAT+GGG 0.417224 2.3:+21066424 None:intergenic
CCAAACTTGTTAAAGAAGTT+GGG 0.428630 2.3:-21065540 MS.gene026880:CDS
GATTCCGGAGTTAGAGTTTG+TGG 0.433392 2.3:+21068191 None:intergenic
GAGTTCTCTTCACTGGTGGA+TGG 0.433754 2.3:-21067226 MS.gene026880:CDS
GTTAAATTTGTGGAGGCTGC+TGG 0.440017 2.3:-21067994 MS.gene026880:CDS
TGCCATTGGAAGCCGGTCAC+TGG 0.444539 2.3:+21065025 None:intergenic
GGCAAGTACTCTTCAATTTG+CGG 0.447272 2.3:-21065890 MS.gene026880:CDS
TGGTAGTAGAGGTTGTGGTC+AGG 0.448882 2.3:+21068108 None:intergenic
ATATCCCCAACAAAATTTCA+TGG 0.465787 2.3:-21065264 MS.gene026880:CDS
CGGCCAGAGGTACCATCACC+GGG 0.472872 2.3:+21068060 None:intergenic
GCGGCCAGAGGTACCATCAC+CGG 0.480913 2.3:+21068059 None:intergenic
ACCTTGAGAAGCTTCTCCTC+TGG 0.481986 2.3:+21067940 None:intergenic
AGATGGCATATAATGGGAAA+TGG 0.483407 2.3:+21066430 None:intergenic
CGCTCCACAAACTCTAACTC+CGG 0.486570 2.3:-21068195 MS.gene026880:CDS
GTAAATGGAGTTCTCTTCAC+TGG 0.489583 2.3:-21067233 MS.gene026880:CDS
AACATAAGAGGCGTGAATGA+AGG 0.497318 2.3:+21068014 None:intergenic
AACTTCTTTAACAAGTTTGG+AGG 0.498562 2.3:+21065543 None:intergenic
CACCCCGGTGATGGTACCTC+TGG 0.501536 2.3:-21068063 MS.gene026880:CDS
AGTTCTCTTCACTGGTGGAT+GGG 0.506693 2.3:-21067225 MS.gene026880:CDS
CTTGGTGAGCCCCATCCAAA+AGG 0.507938 2.3:+21064754 None:intergenic
GGCCGCCACAGTAATGCTAC+AGG 0.508184 2.3:-21068042 MS.gene026880:CDS
CGGAGAATGCAAACATAGAA+GGG 0.512424 2.3:-21065870 MS.gene026880:CDS
TAATCACCTCTGGATGCCAT+TGG 0.512940 2.3:+21065011 None:intergenic
CTCTGGATGCCATTGGAAGC+CGG 0.520431 2.3:+21065018 None:intergenic
ACTGGTGGATGGGCTGACAC+TGG 0.521212 2.3:-21067215 MS.gene026880:CDS
AATCACAGTGGAGTTGATCT+GGG 0.525028 2.3:+21068163 None:intergenic
TAGAGGTTGTGGTCAGGAGG+TGG 0.527872 2.3:+21068114 None:intergenic
TGGCTGAGAATTCCAATGAC+TGG 0.531239 2.3:+21068084 None:intergenic
CTCTTATGTTAAATTTGTGG+AGG 0.532283 2.3:-21068001 MS.gene026880:CDS
ATTCTCAGCCACCCCGGTGA+TGG 0.539879 2.3:-21068072 MS.gene026880:CDS
TGAGAATTCCAATGACTGGC+TGG 0.545139 2.3:+21068088 None:intergenic
TGATTCAAAGATTTCATCAC+CGG 0.552956 2.3:-21068145 MS.gene026880:CDS
ATCCAGTGACCGGCTTCCAA+TGG 0.556007 2.3:-21065027 MS.gene026880:CDS
CAATGACTGGCTGGTAGTAG+AGG 0.556754 2.3:+21068097 None:intergenic
AATAAAGAAGATAAACAAAA+CGG 0.560193 2.3:+21068236 None:intergenic
AATGCATCTCCAGTGAAGCT+AGG 0.566487 2.3:-21064222 MS.gene026880:intron
ACATAGAAGGGGTATTTCAA+AGG 0.571750 2.3:-21065858 MS.gene026880:intron
CTGGCTGGTAGTAGAGGTTG+TGG 0.574558 2.3:+21068103 None:intergenic
AAGCTCAAAACCTAAGCAGA+TGG 0.578814 2.3:+21066413 None:intergenic
TAGTAGAGGTTGTGGTCAGG+AGG 0.579560 2.3:+21068111 None:intergenic
AATGGAGTTCTCTTCACTGG+TGG 0.587353 2.3:-21067230 MS.gene026880:CDS
CGCCTGTAGCATTACTGTGG+CGG 0.589059 2.3:+21068040 None:intergenic
TGAATGGCATCCTCTGTGTG+TGG 0.595817 2.3:+21064727 None:intergenic
AGTGGAGTTGATCTGGGAGA+AGG 0.598764 2.3:+21068169 None:intergenic
TCTGGTTCATTATAAATGAG+AGG 0.599159 2.3:+21067958 None:intergenic
TCAGGAGGTGGACAACTGAC+CGG 0.599548 2.3:+21068126 None:intergenic
TCACGAAACTATCCAGTGAC+CGG 0.606042 2.3:-21065037 MS.gene026880:CDS
AACATACTGAGTTGTCTGAA+TGG 0.611041 2.3:+21064711 None:intergenic
AGCATTACTGTGGCGGCCAG+AGG 0.627285 2.3:+21068047 None:intergenic
ATAGTTTCGTGAACGTACCG+TGG 0.629134 2.3:+21065048 None:intergenic
TATATCAATTATCATAAGCG+AGG 0.647698 2.3:-21066391 MS.gene026880:intron
CAGAGGTACCATCACCGGGG+TGG 0.649126 2.3:+21068064 None:intergenic
TCTCATTTATAATGAACCAG+AGG 0.653132 2.3:-21067956 MS.gene026880:CDS
ACCAGAGGAGAAGCTTCTCA+AGG 0.657589 2.3:-21067941 MS.gene026880:intron
TTGCAACGACGAAGAAGACA+AGG 0.662840 2.3:-21065202 MS.gene026880:intron
CGGCTTCCAATGGCATCCAG+AGG 0.662886 2.3:-21065017 MS.gene026880:intron
ATTGGAATTCTCAGCCACCC+CGG 0.683002 2.3:-21068078 MS.gene026880:CDS
GGAGAATGCAAACATAGAAG+GGG 0.689332 2.3:-21065869 MS.gene026880:CDS
ATGAAATCTTTGAATCACAG+TGG 0.692784 2.3:+21068151 None:intergenic
AAGCGCCTGTAGCATTACTG+TGG 0.704537 2.3:+21068037 None:intergenic
ACCAAGAATTCCACACACAG+AGG 0.704742 2.3:-21064737 MS.gene026880:CDS
GGCCAGAGGTACCATCACCG+GGG 0.738581 2.3:+21068061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAATCAACA+TGG - chr2.3:21066997-21067016 MS.gene026880:intron 10.0%
!! AATAAAGAAGATAAACAAAA+CGG + chr2.3:21064155-21064174 None:intergenic 15.0%
!! ATAAACAAGTTACTTATTAT+TGG - chr2.3:21065470-21065489 MS.gene026880:intron 15.0%
!! TATAAAATCGTTTACATTAA+TGG + chr2.3:21065262-21065281 None:intergenic 15.0%
!! TGTCTAATAAATAATACTAA+TGG + chr2.3:21065438-21065457 None:intergenic 15.0%
!! TTATACAAAGCAAATTATAA+AGG + chr2.3:21066051-21066070 None:intergenic 15.0%
!! AAGTGAAAAAAGAATAGTTA+AGG + chr2.3:21065067-21065086 None:intergenic 20.0%
!! ACGTTGTTAATTATTTAGAT+AGG + chr2.3:21067807-21067826 None:intergenic 20.0%
!! GTAATTTCTTTGATTAAAAG+AGG - chr2.3:21064896-21064915 MS.gene026880:intron 20.0%
!! TAATTATTTAGATAGGCTAA+TGG + chr2.3:21067800-21067819 None:intergenic 20.0%
!! TGATAAATGTGTTGAAAATA+CGG + chr2.3:21068115-21068134 None:intergenic 20.0%
!!! AAAATTTAAAGCAGAAAATC+AGG - chr2.3:21066477-21066496 MS.gene026880:intron 20.0%
!!! AACTATTCTTTTTTCACTTA+AGG - chr2.3:21065068-21065087 MS.gene026880:intron 20.0%
!!! ATAGCATTTGTAATTGTTTT+AGG - chr2.3:21067308-21067327 MS.gene026880:intron 20.0%
!!! ATATATACATGTTTGAAGTT+CGG - chr2.3:21067063-21067082 MS.gene026880:intron 20.0%
!!! TCAATTTTTCACAAAATTTC+AGG + chr2.3:21066365-21066384 None:intergenic 20.0%
!!! TTAGATATCTAAAATACAGA+TGG + chr2.3:21067584-21067603 None:intergenic 20.0%
!!! TTGCAACATAAAATGTTTTT+TGG + chr2.3:21065002-21065021 None:intergenic 20.0%
!!! TTGTATAATCAAAGTTTGTT+TGG - chr2.3:21067990-21068009 MS.gene026880:CDS 20.0%
! AAATGCCAGTAATTTGAAAA+AGG - chr2.3:21064477-21064496 MS.gene026880:intron 25.0%
! AACTGTTGGAAGAATATTTA+AGG - chr2.3:21065208-21065227 MS.gene026880:CDS 25.0%
! AACTTCTTGATTGATTATTC+TGG - chr2.3:21064796-21064815 MS.gene026880:intron 25.0%
! AATCAACATCTATTTGACTA+AGG + chr2.3:21065701-21065720 None:intergenic 25.0%
! AATCCAAAGAAAAAAGAAAC+TGG + chr2.3:21066413-21066432 None:intergenic 25.0%
! ATCAACATCTATTTGACTAA+GGG + chr2.3:21065700-21065719 None:intergenic 25.0%
! ATTGAATGCTTATATTTGAG+CGG - chr2.3:21067487-21067506 MS.gene026880:intron 25.0%
! CTATATGAATGACAAAATTG+AGG + chr2.3:21064771-21064790 None:intergenic 25.0%
! GGATATGAATTAAATTCATC+TGG - chr2.3:21065406-21065425 MS.gene026880:intron 25.0%
! GTTTCAGAACATAAATTGTA+TGG + chr2.3:21066735-21066754 None:intergenic 25.0%
! TAAAATACAGATGGACAAAA+GGG + chr2.3:21067575-21067594 None:intergenic 25.0%
! TATATCAATTATCATAAGCG+AGG - chr2.3:21065997-21066016 MS.gene026880:intron 25.0%
! TGATTTAGAAATGTTTGTGA+TGG - chr2.3:21065091-21065110 MS.gene026880:intron 25.0%
! TGCTAATGTAATATAGTCTA+GGG - chr2.3:21066677-21066696 MS.gene026880:intron 25.0%
! TTGTTCAAAATGTTCAACAT+AGG + chr2.3:21066338-21066357 None:intergenic 25.0%
!! AATTTTCCTAGTCGATATAA+TGG + chr2.3:21066305-21066324 None:intergenic 25.0%
!! ACATTTTATGTTGCAAAACA+TGG - chr2.3:21065006-21065025 MS.gene026880:intron 25.0%
!! ATAGAAAAATCCTTTTGGAT+GGG - chr2.3:21067624-21067643 MS.gene026880:intron 25.0%
!! ATTACCATGAAATTTTGTTG+GGG + chr2.3:21067131-21067150 None:intergenic 25.0%
!! ATTTTATCCTATGCTATAGA+AGG - chr2.3:21066274-21066293 MS.gene026880:intron 25.0%
!! GATTACCATGAAATTTTGTT+GGG + chr2.3:21067132-21067151 None:intergenic 25.0%
!! GTTTTTGTCCTATAAAAAAC+AGG + chr2.3:21066449-21066468 None:intergenic 25.0%
!! TGATTACCATGAAATTTTGT+TGG + chr2.3:21067133-21067152 None:intergenic 25.0%
!! TTAGATGAACTTATGCATTT+TGG - chr2.3:21065872-21065891 MS.gene026880:CDS 25.0%
!!! AGTTTCTGAATGTTTTTGTT+TGG - chr2.3:21064632-21064651 MS.gene026880:intron 25.0%
!!! ATTCCAGTTTCTTTTTTCTT+TGG - chr2.3:21066407-21066426 MS.gene026880:CDS 25.0%
!!! GGTTTATATTTTGAAACTGT+TGG - chr2.3:21065194-21065213 MS.gene026880:intron 25.0%
!!! TAAGTTTGCCTGTTTTTTAT+AGG - chr2.3:21066438-21066457 MS.gene026880:CDS 25.0%
!!! TATAAAAGTATTTCCTTCCA+CGG - chr2.3:21066151-21066170 MS.gene026880:intron 25.0%
AAAATACAGATGGACAAAAG+GGG + chr2.3:21067574-21067593 None:intergenic 30.0%
AACTTCTTTAACAAGTTTGG+AGG + chr2.3:21066848-21066867 None:intergenic 30.0%
ACCAATCATGTATATGACTT+TGG - chr2.3:21065298-21065317 MS.gene026880:intron 30.0%
ACCTCATTATATGTCCATTA+AGG + chr2.3:21066600-21066619 None:intergenic 30.0%
ACTATATTACATTAGCACGT+TGG + chr2.3:21066674-21066693 None:intergenic 30.0%
AGTTATGAAAATTGTGTTGG+TGG + chr2.3:21064503-21064522 None:intergenic 30.0%
ATAAGCTATTCTTCAATACG+AGG - chr2.3:21066919-21066938 MS.gene026880:intron 30.0%
ATAATGAGGTCAGAATAGTT+GGG - chr2.3:21066610-21066629 MS.gene026880:intron 30.0%
ATAATTGCAGAAGCTTGAAT+TGG - chr2.3:21065133-21065152 MS.gene026880:intron 30.0%
ATATCCCCAACAAAATTTCA+TGG - chr2.3:21067124-21067143 MS.gene026880:intron 30.0%
ATATCTGATTTATGACAGCA+AGG - chr2.3:21067100-21067119 MS.gene026880:intron 30.0%
ATGAAATCTTTGAATCACAG+TGG + chr2.3:21064240-21064259 None:intergenic 30.0%
ATTACAAGCCAAATAATTGC+TGG + chr2.3:21065843-21065862 None:intergenic 30.0%
CGAAGTTATGAAAATTGTGT+TGG + chr2.3:21064506-21064525 None:intergenic 30.0%
CTAAAATACAGATGGACAAA+AGG + chr2.3:21067576-21067595 None:intergenic 30.0%
CTCCACAAATTTAACATAAG+AGG + chr2.3:21064389-21064408 None:intergenic 30.0%
CTCTTATGTTAAATTTGTGG+AGG - chr2.3:21064387-21064406 MS.gene026880:intron 30.0%
GTGCTAATGTAATATAGTCT+AGG - chr2.3:21066676-21066695 MS.gene026880:intron 30.0%
TATAATGAGGTCAGAATAGT+TGG - chr2.3:21066609-21066628 MS.gene026880:intron 30.0%
TATTTGATCAATACCAAGCA+AGG - chr2.3:21064686-21064705 MS.gene026880:intron 30.0%
TCCAAAGTCATATACATGAT+TGG + chr2.3:21065302-21065321 None:intergenic 30.0%
TCTCATTTATAATGAACCAG+AGG - chr2.3:21064432-21064451 MS.gene026880:intron 30.0%
TCTTTACCTGACCAAAAAAT+TGG + chr2.3:21067704-21067723 None:intergenic 30.0%
TGATTCAAAGATTTCATCAC+CGG - chr2.3:21064243-21064262 MS.gene026880:intron 30.0%
TGGAATTGTTCTTGATGAAA+TGG - chr2.3:21065796-21065815 MS.gene026880:intron 30.0%
TGGATGGTATCAAATAAACA+CGG + chr2.3:21064718-21064737 None:intergenic 30.0%
TGTTATCTTATGAGGTGATA+TGG - chr2.3:21067219-21067238 MS.gene026880:CDS 30.0%
TTCAACAGTGTTCAATGTAT+AGG - chr2.3:21066764-21066783 MS.gene026880:intron 30.0%
TTCGATGATGTTATCTTATG+AGG - chr2.3:21067211-21067230 MS.gene026880:CDS 30.0%
TTCTATTCATGTGGTATAAC+TGG - chr2.3:21067757-21067776 MS.gene026880:intron 30.0%
! ATGCCATAGAAAAATCCTTT+TGG - chr2.3:21067619-21067638 MS.gene026880:intron 30.0%
! ATTTTAAACGATCTCAACCA+TGG + chr2.3:21067461-21067480 None:intergenic 30.0%
! CATAGAAAAATCCTTTTGGA+TGG - chr2.3:21067623-21067642 MS.gene026880:intron 30.0%
! CATCCAAAAGGATTTTTCTA+TGG + chr2.3:21067625-21067644 None:intergenic 30.0%
! CCAACTTTTTATGCAAAAGA+AGG - chr2.3:21068249-21068268 MS.gene026880:CDS 30.0%
! CCTTCTTTTGCATAAAAAGT+TGG + chr2.3:21068252-21068271 None:intergenic 30.0%
! GGAAGAATATTTAAGGTATC+TGG - chr2.3:21065215-21065234 MS.gene026880:CDS 30.0%
! TAGAAAAATCCTTTTGGATG+GGG - chr2.3:21067625-21067644 MS.gene026880:intron 30.0%
! TCTGGTTCATTATAAATGAG+AGG + chr2.3:21064433-21064452 None:intergenic 30.0%
! TGGAAAATCTTTTTGCACAA+GGG - chr2.3:21065740-21065759 MS.gene026880:intron 30.0%
! TGGAGAAGACAAAAATCTTT+TGG - chr2.3:21065026-21065045 MS.gene026880:CDS 30.0%
! TTGGAAAATCTTTTTGCACA+AGG - chr2.3:21065739-21065758 MS.gene026880:intron 30.0%
! TTTGTTCATGCAGAAAGTTT+TGG - chr2.3:21065916-21065935 MS.gene026880:CDS 30.0%
!! AGAACAAGTTGACAGATTTT+GGG + chr2.3:21065652-21065671 None:intergenic 30.0%
!! CCAAACTTGTTAAAGAAGTT+GGG - chr2.3:21066848-21066867 MS.gene026880:intron 30.0%
!! GTTACAAGCTCTTCTAAAAT+AGG + chr2.3:21068023-21068042 None:intergenic 30.0%
!! TAGAACAAGTTGACAGATTT+TGG + chr2.3:21065653-21065672 None:intergenic 30.0%
!! TCCAAACTTGTTAAAGAAGT+TGG - chr2.3:21066847-21066866 MS.gene026880:intron 30.0%
!!! AGAACTTTTTTAATCACCTC+TGG + chr2.3:21067390-21067409 None:intergenic 30.0%
!!! GTTTTAGGTTTATGTTTCCA+CGG - chr2.3:21067323-21067342 MS.gene026880:intron 30.0%
!!! TCAGTATGTTGCCAATTTTT+TGG - chr2.3:21067690-21067709 MS.gene026880:intron 30.0%
AACATACTGAGTTGTCTGAA+TGG + chr2.3:21067680-21067699 None:intergenic 35.0%
ACCACATGAATAGAAAGCAA+TGG + chr2.3:21067752-21067771 None:intergenic 35.0%
ACTATTGATACGTCATACGT+AGG - chr2.3:21067909-21067928 MS.gene026880:intron 35.0%
ACTTAGAGTGTGTTTGAATG+AGG - chr2.3:21064545-21064564 MS.gene026880:intron 35.0%
ATGCATTTATCTGACTCATC+TGG + chr2.3:21066098-21066117 None:intergenic 35.0%
ATGCTTATATTTGAGCGGTT+TGG - chr2.3:21067492-21067511 MS.gene026880:intron 35.0%
ATTGAGGTGATCTCAATAGT+TGG + chr2.3:21064755-21064774 None:intergenic 35.0%
CAGAAGCTTGAATTGGTAAA+TGG - chr2.3:21065140-21065159 MS.gene026880:intron 35.0%
CAGAGTAATTGCGATTGTAA+CGG - chr2.3:21067831-21067850 MS.gene026880:intron 35.0%
CATCTGGAAACATCTATTCT+TGG + chr2.3:21066082-21066101 None:intergenic 35.0%
CCCAACTTCTTTAACAAGTT+TGG + chr2.3:21066851-21066870 None:intergenic 35.0%
CCTAAAATTTGTAACTGTGC+TGG - chr2.3:21065776-21065795 MS.gene026880:intron 35.0%
CGCCTCTTATGTTAAATTTG+TGG - chr2.3:21064384-21064403 MS.gene026880:intron 35.0%
CTAAGCAGATGGCATATAAT+GGG + chr2.3:21065967-21065986 None:intergenic 35.0%
GACTGTTCAATCTAAATCCA+TGG - chr2.3:21067441-21067460 MS.gene026880:intron 35.0%
GATTATTGCTTGTAACTGTG+TGG - chr2.3:21067537-21067556 MS.gene026880:intron 35.0%
GCAAAACCTCTTTACACTAT+CGG - chr2.3:21065382-21065401 MS.gene026880:intron 35.0%
GTAAGTAACGAGTTAGTTAG+AGG - chr2.3:21065505-21065524 MS.gene026880:intron 35.0%
GTGTGTTTGAATGAGGTAAT+TGG - chr2.3:21064552-21064571 MS.gene026880:intron 35.0%
GTTACACTTTGATGCCTTAA+TGG - chr2.3:21066583-21066602 MS.gene026880:intron 35.0%
TATCAATAGTACTGCTTCAC+AGG + chr2.3:21067899-21067918 None:intergenic 35.0%
TCAAACAATTCTTGAGCAAC+TGG + chr2.3:21068207-21068226 None:intergenic 35.0%
TCCATTGCTTTCTATTCATG+TGG - chr2.3:21067748-21067767 MS.gene026880:intron 35.0%
TGATGATAGTAGAGATTCGA+TGG + chr2.3:21064839-21064858 None:intergenic 35.0%
! AGATGGCATATAATGGGAAA+TGG + chr2.3:21065961-21065980 None:intergenic 35.0%
! CAAATAGATGTTGATTGCAG+AGG - chr2.3:21065705-21065724 MS.gene026880:intron 35.0%
! CCAGCACAGTTACAAATTTT+AGG + chr2.3:21065779-21065798 None:intergenic 35.0%
! GATTAGCCATTATATCGACT+AGG - chr2.3:21066296-21066315 MS.gene026880:intron 35.0%
! GCCTTAATGGACATATAATG+AGG - chr2.3:21066596-21066615 MS.gene026880:intron 35.0%
!! ACATAGAAGGGGTATTTCAA+AGG - chr2.3:21066530-21066549 MS.gene026880:intron 35.0%
!! ATAACTGGTTGATGATTCTC+TGG - chr2.3:21067772-21067791 MS.gene026880:intron 35.0%
!! CATGTATATGACTTTGGAGT+TGG - chr2.3:21065304-21065323 MS.gene026880:intron 35.0%
!! GTTTTGGATAAAAATGACGC+AGG - chr2.3:21065932-21065951 MS.gene026880:intron 35.0%
!!! ATGTTGCCAATTTTTTGGTC+AGG - chr2.3:21067695-21067714 MS.gene026880:intron 35.0%
AAACCTCTTTACACTATCGG+TGG - chr2.3:21065385-21065404 MS.gene026880:intron 40.0%
AAGCTCAAAACCTAAGCAGA+TGG + chr2.3:21065978-21065997 None:intergenic 40.0%
ACACCAAACACGTCTTCAAT+CGG + chr2.3:21066197-21066216 None:intergenic 40.0%
AGTAGAGATTCGATGGATGT+CGG + chr2.3:21064832-21064851 None:intergenic 40.0%
ATTCCGATTGAAGACGTGTT+TGG - chr2.3:21066191-21066210 MS.gene026880:intron 40.0%
ATTTGATACCATCCATGCCT+TGG - chr2.3:21064723-21064742 MS.gene026880:CDS 40.0%
CCATTATATGCCATCTGCTT+AGG - chr2.3:21065965-21065984 MS.gene026880:intron 40.0%
CCTAAGCAGATGGCATATAA+TGG + chr2.3:21065968-21065987 None:intergenic 40.0%
CGGAGAATGCAAACATAGAA+GGG - chr2.3:21066518-21066537 MS.gene026880:intron 40.0%
GCTAGTTGCCAGCAATTATT+TGG - chr2.3:21065832-21065851 MS.gene026880:intron 40.0%
GGAGAATGCAAACATAGAAG+GGG - chr2.3:21066519-21066538 MS.gene026880:intron 40.0%
GGCAAGTACTCTTCAATTTG+CGG - chr2.3:21066498-21066517 MS.gene026880:intron 40.0%
GGCTAATCCTTCTATAGCAT+AGG + chr2.3:21066284-21066303 None:intergenic 40.0%
GTAAATGGAGTTCTCTTCAC+TGG - chr2.3:21065155-21065174 MS.gene026880:intron 40.0%
TAAGGATTTCCTAGCTTCAC+TGG + chr2.3:21068178-21068197 None:intergenic 40.0%
TATCCACCGATAGTGTAAAG+AGG + chr2.3:21065391-21065410 None:intergenic 40.0%
TGCAGAGGACTTGTATTTGT+TGG - chr2.3:21065720-21065739 MS.gene026880:intron 40.0%
! AACATAAGAGGCGTGAATGA+AGG + chr2.3:21064377-21064396 None:intergenic 40.0%
! AATCACAGTGGAGTTGATCT+GGG + chr2.3:21064228-21064247 None:intergenic 40.0%
! TTGAGCAACTGGTCTGTTTA+AGG + chr2.3:21068196-21068215 None:intergenic 40.0%
!! TTTGGTGTTCTACACGTGTT+AGG - chr2.3:21066209-21066228 MS.gene026880:intron 40.0%
!!! GGTGGCCTTTTTCAAATTAC+TGG + chr2.3:21064485-21064504 None:intergenic 40.0%
AATGCATCTCCAGTGAAGCT+AGG - chr2.3:21068166-21068185 MS.gene026880:CDS 45.0%
AATGGAGTTCTCTTCACTGG+TGG - chr2.3:21065158-21065177 MS.gene026880:intron 45.0%
ACCAAGAATTCCACACACAG+AGG - chr2.3:21067651-21067670 MS.gene026880:intron 45.0%
ATAGTTTCGTGAACGTACCG+TGG + chr2.3:21067343-21067362 None:intergenic 45.0%
GATTCCGGAGTTAGAGTTTG+TGG + chr2.3:21064200-21064219 None:intergenic 45.0%
GCGGAGAATGCAAACATAGA+AGG - chr2.3:21066517-21066536 MS.gene026880:intron 45.0%
GTGTTCTACACGTGTTAGGT+CGG - chr2.3:21066213-21066232 MS.gene026880:intron 45.0%
GTTAAATTTGTGGAGGCTGC+TGG - chr2.3:21064394-21064413 MS.gene026880:intron 45.0%
TAATCACCTCTGGATGCCAT+TGG + chr2.3:21067380-21067399 None:intergenic 45.0%
TAGCTTCACTGGAGATGCAT+TGG + chr2.3:21068167-21068186 None:intergenic 45.0%
TCAATAGTTGGAAGTCGCCA+AGG + chr2.3:21064743-21064762 None:intergenic 45.0%
TCACGAAACTATCCAGTGAC+CGG - chr2.3:21067351-21067370 MS.gene026880:intron 45.0%
TCCTCTGTGTGTGGAATTCT+TGG + chr2.3:21067655-21067674 None:intergenic 45.0%
TGAGAATTCCAATGACTGGC+TGG + chr2.3:21064303-21064322 None:intergenic 45.0%
TGGCTGAGAATTCCAATGAC+TGG + chr2.3:21064307-21064326 None:intergenic 45.0%
TTGATCTGGGAGAAGGATTC+CGG + chr2.3:21064215-21064234 None:intergenic 45.0%
TTGCAACGACGAAGAAGACA+AGG - chr2.3:21067186-21067205 MS.gene026880:CDS 45.0%
! AGTTCTCTTCACTGGTGGAT+GGG - chr2.3:21065163-21065182 MS.gene026880:intron 45.0%
! GAATCACAGTGGAGTTGATC+TGG + chr2.3:21064229-21064248 None:intergenic 45.0%
!!! TATTTTTTTTATCAATAATA+TGG + chr2.3:21066983-21067002 None:intergenic 5.0%
AAGCGCCTGTAGCATTACTG+TGG + chr2.3:21064354-21064373 None:intergenic 50.0%
ACCAGAGGAGAAGCTTCTCA+AGG - chr2.3:21064447-21064466 MS.gene026880:intron 50.0%
ACCTTGAGAAGCTTCTCCTC+TGG + chr2.3:21064451-21064470 None:intergenic 50.0%
AGTGCTACATAGACCGTGGA+AGG + chr2.3:21066167-21066186 None:intergenic 50.0%
ATTGGAATTCTCAGCCACCC+CGG - chr2.3:21064310-21064329 MS.gene026880:intron 50.0%
CGCTCCACAAACTCTAACTC+CGG - chr2.3:21064193-21064212 MS.gene026880:CDS 50.0%
CTCTACTACCAGCCAGTCAT+TGG - chr2.3:21064292-21064311 MS.gene026880:intron 50.0%
GAGTTCTCTTCACTGGTGGA+TGG - chr2.3:21065162-21065181 MS.gene026880:intron 50.0%
GTCCTCATCGTTGTTACTCC+CGG + chr2.3:21066649-21066668 None:intergenic 50.0%
TAGTAGAGGTTGTGGTCAGG+AGG + chr2.3:21064280-21064299 None:intergenic 50.0%
TGAATGGCATCCTCTGTGTG+TGG + chr2.3:21067664-21067683 None:intergenic 50.0%
TGGTAGTAGAGGTTGTGGTC+AGG + chr2.3:21064283-21064302 None:intergenic 50.0%
TGTCAGTGCTACATAGACCG+TGG + chr2.3:21066171-21066190 None:intergenic 50.0%
TTGTTACTCCCGGTGCTCTT+TGG + chr2.3:21066639-21066658 None:intergenic 50.0%
! AGTGGAGTTGATCTGGGAGA+AGG + chr2.3:21064222-21064241 None:intergenic 50.0%
! CAATGACTGGCTGGTAGTAG+AGG + chr2.3:21064294-21064313 None:intergenic 50.0%
! GTTGGGATTCCAAAGAGCAC+CGG - chr2.3:21066627-21066646 MS.gene026880:intron 50.0%
!! TTGGGATTCCAAAGAGCACC+GGG - chr2.3:21066628-21066647 MS.gene026880:intron 50.0%
AACACGGATGCTGCCTTGCT+TGG + chr2.3:21064702-21064721 None:intergenic 55.0%
AGTTGGAAGTCGCCAAGGCA+TGG + chr2.3:21064738-21064757 None:intergenic 55.0%
CACCGGGAGTAACAACGATG+AGG - chr2.3:21066644-21066663 MS.gene026880:intron 55.0%
CGCCTGTAGCATTACTGTGG+CGG + chr2.3:21064351-21064370 None:intergenic 55.0%
CTCTGGATGCCATTGGAAGC+CGG + chr2.3:21067373-21067392 None:intergenic 55.0%
CTGGCTGGTAGTAGAGGTTG+TGG + chr2.3:21064288-21064307 None:intergenic 55.0%
CTTGGTGAGCCCCATCCAAA+AGG + chr2.3:21067637-21067656 None:intergenic 55.0%
TAGAGGTTGTGGTCAGGAGG+TGG + chr2.3:21064277-21064296 None:intergenic 55.0%
TCAGGAGGTGGACAACTGAC+CGG + chr2.3:21064265-21064284 None:intergenic 55.0%
! ATCCAGTGACCGGCTTCCAA+TGG - chr2.3:21067361-21067380 MS.gene026880:intron 55.0%
AGCATTACTGTGGCGGCCAG+AGG + chr2.3:21064344-21064363 None:intergenic 60.0%
ATTCTCAGCCACCCCGGTGA+TGG - chr2.3:21064316-21064335 MS.gene026880:intron 60.0%
CGGCTTCCAATGGCATCCAG+AGG - chr2.3:21067371-21067390 MS.gene026880:intron 60.0%
GGAAGTCGCCAAGGCATGGA+TGG + chr2.3:21064734-21064753 None:intergenic 60.0%
GGCCGCCACAGTAATGCTAC+AGG - chr2.3:21064346-21064365 MS.gene026880:intron 60.0%
TGCCATTGGAAGCCGGTCAC+TGG + chr2.3:21067366-21067385 None:intergenic 60.0%
!! ACTGGTGGATGGGCTGACAC+TGG - chr2.3:21065173-21065192 MS.gene026880:intron 60.0%
! CACCCCGGTGATGGTACCTC+TGG - chr2.3:21064325-21064344 MS.gene026880:intron 65.0%
!! CAGAGGTACCATCACCGGGG+TGG + chr2.3:21064327-21064346 None:intergenic 65.0%
!! CGGCCAGAGGTACCATCACC+GGG + chr2.3:21064331-21064350 None:intergenic 65.0%
!! GCGGCCAGAGGTACCATCAC+CGG + chr2.3:21064332-21064351 None:intergenic 65.0%
!! GGCCAGAGGTACCATCACCG+GGG + chr2.3:21064330-21064349 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 21064139 21068271 21064139 ID=MS.gene026880
chr2.3 mRNA 21064139 21068271 21064139 ID=MS.gene026880.t1;Parent=MS.gene026880
chr2.3 exon 21067942 21068271 21067942 ID=MS.gene026880.t1.exon1;Parent=MS.gene026880.t1
chr2.3 CDS 21067942 21068271 21067942 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21067181 21067267 21067181 ID=MS.gene026880.t1.exon2;Parent=MS.gene026880.t1
chr2.3 CDS 21067181 21067267 21067181 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21066392 21066481 21066392 ID=MS.gene026880.t1.exon3;Parent=MS.gene026880.t1
chr2.3 CDS 21066392 21066481 21066392 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21065859 21065950 21065859 ID=MS.gene026880.t1.exon4;Parent=MS.gene026880.t1
chr2.3 CDS 21065859 21065950 21065859 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21065509 21065569 21065509 ID=MS.gene026880.t1.exon5;Parent=MS.gene026880.t1
chr2.3 CDS 21065509 21065569 21065509 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21065203 21065292 21065203 ID=MS.gene026880.t1.exon6;Parent=MS.gene026880.t1
chr2.3 CDS 21065203 21065292 21065203 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21065018 21065080 21065018 ID=MS.gene026880.t1.exon7;Parent=MS.gene026880.t1
chr2.3 CDS 21065018 21065080 21065018 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21064694 21064782 21064694 ID=MS.gene026880.t1.exon8;Parent=MS.gene026880.t1
chr2.3 CDS 21064694 21064782 21064694 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
chr2.3 exon 21064139 21064231 21064139 ID=MS.gene026880.t1.exon9;Parent=MS.gene026880.t1
chr2.3 CDS 21064139 21064231 21064139 ID=cds.MS.gene026880.t1;Parent=MS.gene026880.t1
Gene Sequence

>MS.gene026880

ATGTTAAACTATGCCGTTTTGTTTATCTTCTTTATTGCAGTCTTTCAATGCTTTCGCTCCACAAACTCTAACTCCGGAATCCTTCTCCCAGATCAACTCCACTGTGATTCAAAGATTTCATCACCGGTCAGTTGTCCACCTCCTGACCACAACCTCTACTACCAGCCAGTCATTGGAATTCTCAGCCACCCCGGTGATGGTACCTCTGGCCGCCACAGTAATGCTACAGGCGCTTCCTTCATTCACGCCTCTTATGTTAAATTTGTGGAGGCTGCTGGTGCTAGAGTAGTTCCTCTCATTTATAATGAACCAGAGGAGAAGCTTCTCAAGGTATCAGAAAATGCCAGTAATTTGAAAAAGGCCACCAACACAATTTTCATAACTTCGTAAAAAAATTATGAATCAAACTTAGAGTGTGTTTGAATGAGGTAATTGGAAATTTTTAGAGAATTTAGAATTATAGTCAATTCAAATGATTCAATTGAATTGTCTTAGTTTCTGAATGTTTTTGTTTGGATAGAATAATAAAAAGTTTCATTTGCTAACATATTTGATCAATACCAAGCAAGGCAGCATCCGTGTTTATTTGATACCATCCATGCCTTGGCGACTTCCAACTATTGAGATCACCTCAATTTTGTCATTCATATAGTTAGTAACTTCTTGATTGATTATTCTGGAAAAATATAGCCGACATCCATCGAATCTCTACTATCATCATATAAAAGTACATCACTTGTAATTTCTTACATCACTTGTAATTTCTTTGATTAAAAGAGGAATAAGAAAAAAAGTAATAGAAAATCTAACACGATTACTAAACTGTGTATATATACATTGTTAGATAACTTTTTTGTTGTCCAAAAAACATTTTATGTTGCAAAACATGGAGAAGACAAAAATCTTTTGGTATATACAGCAGTAACCTTAACTATTCTTTTTTCACTTAAGGTGATTTAGAAATGTTTGTGATGGTATTGAGTACATTTTCTCAATAATTGCAGAAGCTTGAATTGGTAAATGGAGTTCTCTTCACTGGTGGATGGGCTGACACTGGTTTATATTTTGAAACTGTTGGAAGAATATTTAAGGTATCTGGTCAAAGTTTAATTTTCATGCACCATTAATGTAAACGATTTTATATTGTCAACACGTCACAACCAATCATGTATATGACTTTGGAGTTGGTTATGACAAAAGTCAAATGTTTCTAATAATCTGATAGTTATGATCGATTGACATAGCAAAACCTCTTTACACTATCGGTGGATATGAATTAAATTCATCTGGTTATTACCATTAGTATTATTTATTAGACAACTTGTTAGATAATAAACAAGTTACTTATTATTGGATTACTTGAGTTGTAAGTAACGAGTTAGTTAGAGGTTATAACTAACTTCGTATAACTAGAATACAATCATATTGTAAATACGTATTCATCATCAATAAGAAATTTGATTCTCGTCATATACTCACTCTCTCAATTTCTCAATCTTTCAATAATAGTCCCAAAATCTGTCAACTTGTTCTATCATTATTCTAATACAGTAATACTCCCTTAGTCAAATAGATGTTGATTGCAGAGGACTTGTATTTGTTGGAAAATCTTTTTGCACAAGGGCTATACAGATGCTCCTAAAATTTGTAACTGTGCTGGAATTGTTCTTGATGAAATGGTAGTTAGTTTTGTGCTAGTTGCCAGCAATTATTTGGCTTGTAATTTAATTTTGTTAGATGAACTTATGCATTTTGGAATTTTACATATGAAATTGTATTTGTTCATGCAGAAAGTTTTGGATAAAAATGACGCAGGTGACCATTTCCCATTATATGCCATCTGCTTAGGTTTTGAGCTTATATCAATTATCATAAGCGAGGTGAGTTAGCTTTCTTATTATAGTTTTATCCTTTATAATTTGCTTTGTATAATGTATTTTCCAAGAATAGATGTTTCCAGATGAGTCAGATAAATGCATAGTACTCATAATACTTAACTAGTTAGTCTTATGTATAAAAGTATTTCCTTCCACGGTCTATGTAGCACTGACAATTCCGATTGAAGACGTGTTTGGTGTTCTACACGTGTTAGGTCGGACAATGACACATAGTGTTCAATTATTAATGTCACTCAAATTTTATCCTATGCTATAGAAGGATTAGCCATTATATCGACTAGGAAAATTTGATTGTATGCCTATGTTGAACATTTTGAACAATATTCCTGAAATTTTGTGAAAAATTGAAGACTTCTGACAAGTATAACACATTCCAGTTTCTTTTTTCTTTGGATTGTTTATAAGTTTGCCTGTTTTTTATAGGACAAAAACATTCTTGAAAAATTTAAAGCAGAAAATCAGGCAAGTACTCTTCAATTTGCGGAGAATGCAAACATAGAAGGGGTATTTCAAAGGTAAACAATATATGTAATATTATTTTTTTAAGTTACACTTTGATGCCTTAATGGACATATAATGAGGTCAGAATAGTTGGGATTCCAAAGAGCACCGGGAGTAACAACGATGAGGACAACCAACGTGCTAATGTAATATAGTCTAGGGAGACTGTATATACAAGAAATTTTCTTCATCTACCATACAATTTATGTTCTGAAACTTTTAATCATTCAACAGTGTTCAATGTATAGGTTCTTTGTCACTGAATTTAATATGCAAAGTTATTAATCACTTTTTTTTCTGCAGATTTCCTCCAAACTTGTTAAAGAAGTTGGGTACAGATTGTCTAGTCATGCAAAATCATGTTGTGAGTAAATATAATCAATAAGCTATTCTTCAATACGAGGCTCTTACTGTCACAAATTTGAGTATTTAGATACTAGATCCATATTATTGATAAAAAAAATAAAAAATAATCAACATGGATCTATCTTAGTTCTTGAAAAACAAATTTTGATCAAGTTTATCATATATACATGTTTGAAGTTCGGTAAAATGTTTCATTATATCTGATTTATGACAGCAAGGCATATCCCCAACAAAATTTCATGGTAATCAAAAGTTATCTAGTTTTTTCGAGATCTTGACAACTTGCAACGACGAAGAAGACAAGGTATTCGATGATGTTATCTTATGAGGTGATATGGTTCATATATTCATCTTGTCACGTATTTATAACACTGTTATGAGCTTGCTTCAAAAATGTTAATCTAATAGCATTTGTAATTGTTTTAGGTTTATGTTTCCACGGTACGTTCACGAAACTATCCAGTGACCGGCTTCCAATGGCATCCAGAGGTGATTAAAAAAGTTCTATACACAATGTATGATGCAGTTGCTGATCTTGACTGTTCAATCTAAATCCATGGTTGAGATCGTTTAAAATTTATTAATTGAATGCTTATATTTGAGCGGTTTGGTCTCAAATTAATAGTCGAGATTGATTATTGCTTGTAACTGTGTGGTATTATTGCAACCCCTTTTGTCCATCTGTATTTTAGATATCTAACATTATCTATAACTGATGCCATAGAAAAATCCTTTTGGATGGGGCTCACCAAGAATTCCACACACAGAGGATGCCATTCAGACAACTCAGTATGTTGCCAATTTTTTGGTCAGGTAAAGACTCATGAATTTGATAAATGATTCATCCATTGCTTTCTATTCATGTGGTATAACTGGTTGATGATTCTCTGGAACCATTAGCCTATCTAAATAATTAACAACGTTATTCAGAGTAATTGCGATTGTAACGGAAATAAGATAAAAACGATGAAATTTATATTTACTGTTACAATCCTGTGAAGCAGTACTATTGATACGTCATACGTAGGCTCTATTTGTTAAAGTCTAAACTTCTAGCTTATAGTCGATAACTTATAGCATATAAACTTGTATAATCAAAGTTTGTTTGGCAGCGATCCTATTTTAGAAGAGCTTGTAACGTTTTTTCACGAACTCATAGTGTTTTTTGAGATGTTATAACTTCTTGTAGCATTTGAGTTTATAGTGTACCGTATTTTCAACACATTTATCACCGACTAACTTGACGTTTTTCTACTTTCACCAATGCATCTCCAGTGAAGCTAGGAAATCCTTAAACAGACCAGTTGCTCAAGAATTGTTTGACAATCTCATTTACAATCATAGTCCAACTTTTTATGCAAAAGAAGG
Protein sequence

>MS.gene026880.t1

MLNYAVLFIFFIAVFQCFRSTNSNSGILLPDQLHCDSKISSPVSCPPPDHNLYYQPVIGILSHPGDGTSGRHSNATGASFIHASYVKFVEAAGARVVPLIYNEPEEKLLKKLELVNGVLFTGGWADTGLYFETVGRIFKKVLDKNDAGDHFPLYAICLGFELISIIISEDKNILEKFKAENQASTLQFAENANIEGVFQRFPPNLLKKLGTDCLVMQNHVQGISPTKFHGNQKLSSFFEILTTCNDEEDKVYVSTVRSRNYPVTGFQWHPEKNPFGWGSPRIPHTEDAIQTTQYVANFLVSEARKSLNRPVAQELFDNLIYNHSPTFYAKE