AlfalfaGEDB | MS.gene03932

M. sativa cultivar XinJiangDaYe / MS.gene03932

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03932.t1	XP_013460334.1	95.3	466	22	0	1	466	63	528	6.00E-262	912.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03932.t1	Q6J541	66.7	471	149	4	1	464	61	530	4.0e-190	665.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03932.t1	A0A072V898	95.3	466	22	0	1	466	63	528	4.3e-262	912.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008464	MS.gene03932	PPI
MS.gene011756	MS.gene03932	PPI
MS.gene02752	MS.gene03932	PPI
MS.gene028619	MS.gene03932	PPI
MS.gene03932	MS.gene066483	PPI
MS.gene03932	MS.gene008451	PPI
MS.gene03932	MS.gene39425	PPI
MS.gene03932	MS.gene053443	PPI
MS.gene03932	MS.gene008654	PPI
MS.gene03932	MS.gene052502	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03932.t1	MTR_3g465300	95.279	466	22	0	1	466	63	528	0.0	926
MS.gene03932.t1	MTR_3g467200	75.000	468	115	1	1	466	66	533	0.0	757
MS.gene03932.t1	MTR_3g467220	75.000	468	115	1	1	466	61	528	0.0	739
MS.gene03932.t1	MTR_3g467290	64.059	473	162	4	1	465	66	538	0.0	647
MS.gene03932.t1	MTR_8g073950	58.174	471	192	3	1	466	56	526	0.0	581
MS.gene03932.t1	MTR_8g073960	58.174	471	192	3	1	466	60	530	0.0	579
MS.gene03932.t1	MTR_8g076390	55.487	483	185	5	1	466	60	529	0.0	545
MS.gene03932.t1	MTR_8g076372	55.202	471	193	5	1	466	60	517	0.0	529
MS.gene03932.t1	MTR_7g087520	34.361	454	279	8	25	465	74	521	2.34e-82	264
MS.gene03932.t1	MTR_3g025230	32.135	473	301	8	5	465	49	513	1.03e-66	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03932.t1	AT2G22330	53.105	467	215	3	1	464	97	562	0.0	531
MS.gene03932.t1	AT2G22330	53.105	467	215	3	1	464	74	539	0.0	531
MS.gene03932.t1	AT4G39950	53.319	467	214	3	1	464	72	537	0.0	530
MS.gene03932.t1	AT4G39950	53.319	467	214	3	1	464	112	577	0.0	530
MS.gene03932.t1	AT5G05260	52.452	469	214	5	4	464	60	527	0.0	517
MS.gene03932.t1	AT5G05260	49.893	469	194	6	4	464	60	495	1.03e-164	474
MS.gene03932.t1	AT5G35917	46.285	471	199	6	4	464	62	488	7.90e-149	433
MS.gene03932.t1	AT1G58260	44.820	473	252	4	1	464	53	525	4.54e-145	425
MS.gene03932.t1	AT1G79370	43.711	485	250	5	1	464	56	538	4.98e-142	418
MS.gene03932.t1	AT1G16410	40.592	473	272	5	1	464	61	533	8.72e-121	363

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Find 103 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTTGAATGGATAT+TGG	0.318582	3.2:+55672054	MS.gene03932:CDS
AAATGAATTGGACAAAATAG+TGG	0.411830	3.2:+55672117	MS.gene03932:CDS
AACTCTCCGCCTCTACCCCA+TGG	0.586188	3.2:+55672207	MS.gene03932:CDS
AAGAACTCACGAGCAATGAT+GGG	0.597534	3.2:-55670281	None:intergenic
AAGGAGCCATGGGGTAGAGG+CGG	0.644560	3.2:-55672213	None:intergenic
AAGGATATGAACTTCAAACC+TGG	0.615925	3.2:-55672412	None:intergenic
AAGGCTGATGGTTGATGTAG+TGG	0.604013	3.2:-55672536	None:intergenic
AAGTCAAGGAGCCTCAAGCA+TGG	0.655567	3.2:-55670725	None:intergenic
AAGTTCATATCCTTTAGCAC+TGG	0.495572	3.2:+55672421	MS.gene03932:CDS
AATACAAGGTACTTTGGAAA+GGG	0.484172	3.2:+55670602	MS.gene03932:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTTGTTGAATGGATAT+TGG	+	chr3.2:55672054-55672073	MS.gene03932:CDS	30.0%
AATAAGATGAGGAACTTCTA+CGG	+	chr3.2:55671470-55671489	MS.gene03932:intron	30.0%
AGGAAATGTCCATATTATTC+CGG	+	chr3.2:55670250-55670269	MS.gene03932:CDS	30.0%
ATTGACAAAGAAGGAAATCA+AGG	+	chr3.2:55670913-55670932	MS.gene03932:CDS	30.0%
ATTTCCTTCTTTGTCAATAC+CGG	-	chr3.2:55670911-55670930	None:intergenic	30.0%
GAATAAGTTCATGTAAAGGT+AGG	-	chr3.2:55670993-55671012	None:intergenic	30.0%
GAATAATATGGACATTTCCT+AGG	-	chr3.2:55670250-55670269	None:intergenic	30.0%
GTATACAACAAATGCAACAA+TGG	+	chr3.2:55670512-55670531	MS.gene03932:CDS	30.0%
GTTCGTAATTTATACGCATT+AGG	+	chr3.2:55671445-55671464	MS.gene03932:intron	30.0%
TATCTTCTTTAGACTTGACA+AGG	-	chr3.2:55672558-55672577	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	55670170	55672645	55670170	ID=MS.gene03932
chr3.2	mRNA	55670170	55672645	55670170	ID=MS.gene03932.t1;Parent=MS.gene03932
chr3.2	exon	55670170	55670946	55670170	ID=MS.gene03932.t1.exon1;Parent=MS.gene03932.t1
chr3.2	CDS	55670170	55670946	55670170	ID=cds.MS.gene03932.t1;Parent=MS.gene03932.t1
chr3.2	exon	55672022	55672645	55672022	ID=MS.gene03932.t1.exon2;Parent=MS.gene03932.t1
chr3.2	CDS	55672022	55672645	55672022	ID=cds.MS.gene03932.t1;Parent=MS.gene03932.t1

Gene Sequence

>MS.gene03932

ATGATTGCCAATAATCCTGCACCTATGTGGATATTCAAAATGATGGAAGATTTGAACACCGAAATAGCATGTATCCGCCTAGGAAATGTCCATATTATTCCGGTTACATGTCCCATCATTGCTCGTGAGTTCTTGAGAAAACATGATGCTGATTTTGCATCAAGACCAATTACCATGGCCAGTGGTATAATCTCCAATGGCTACTTGACCTCCGCTATTGCACCCTTTGGCGAACAATGGAAAAAGATGAAGAACATCATTGTTAACGATTTGTTGTCTCCACAAAGACATCGATGGCTTCAAGACAAAAGGAACGAAGAAGCCGATAATCTTATGTTTTATGTATACAACAAATGCAACAATGGTGATCTTGTGAGTGTTAGATTTGCTTCACAACATTATTGTGGTAATGTGTATAGAAAAATGTATTTTAATACAAGGTACTTTGGAAAGGGTATGAAAGATGGAGGGCCTGGTCTTGAGGAAATTGAGCATGTTGATGCTGCTTTTACATTGCTCAAGTATATTTATGCTTTCTCTGCATCTGATTATATGCCATGCTTGAGGCTCCTTGACTTAGATGGCCACAAGGGGAAAATAAAAAACGCAATGAAAATAATGAACAAGTATCACGATTCTATCATTGAAGAGAGAATCAAGCAGTGGAATGATGGATCAAGGACGGTTGAAGAGGACTTGCTAGATGTTCTGATCTCACTGAAAGATGTTAATAATAATCCGGTATTGACAAAGAAGGAAATCAAGGCACAACTTATTGTAAGACATCACTTATTTTTATTTTTTATTTTTTTTATTTTCTCCTACCTTTACATGAACTTATTCATTCTAGAAAATGTAAAATTTCTAGGAAAAAAAAACAAGGGTGTGTGGACTTCTAAAAATAGTCCAAAAGTGGTGTCTGCCTAACTTTCAAGTATATCTGCCTAACTTTTTCTTATTCAAGTATATCTTTAAGCATATTTGATCATAAGAATACTATTTTGTTGGCGTTATTTAAAAAGATAAGAATTTATATCATAGTTGATATATTTTTTTGAAAAATATTATATTTGTTATATTGTTGGTATCATTGAAAAAGATAAATATAGTTAGCTACAATATGAAAGGGTAAAATATCTATTATCGATACCTATAATTTTAGTCAAAATCAAATTAATTTTAATGAAAATTTCATAAAAACTATTGTTTATAATTTATACGCAATAACGTAATAAGAAAAGCCAACCGACGGGTACTCATTTCATAAAAACTATTGTTCGTAATTTATACGCATTAGGGTAATAAGATGAGGAACTTCTACGGTACACCTCACAAATTGAAGTGTACCAGTACTCTTCCTTCATAAATTTATAGATTATCTATCATTTTATGAAATAAATAGCTATTTGTCAATATTTATATTTTAGAAAACATCATTTTATAAGAAAAAACGTCATTTCATTGTTTTTAAGAATCATATTAAATTTTTAACGTTTTCTCATAAAAAAATATTCAAAAATTAATAATCAATATTCTTTGTTATCAGAAGTAAAAATTCAAAAAAAATAAAATTATTTCGCCGTCGTTTTTGGTAAATAAGATTTAATTATTATAATTATCAATGATAGAAAATATTTTTTTTCTAAAAAAAAAAACAACTCATTTATTTGGTGTACCGGTACACTTAAAATTTTGGGTGTACCATAAAATTTGCCAATAAGATGAGCCGACCGAAGGACACGGAGGGCCCGTCTAAATGCTAGTTTTGGAATAATCTAAAAATTTGATTTATAAATCTTGATTTTCATTAGTTTTACGTTGAACGTTTGAACTCATCATAAAACTTATGTAGGAATTGATGATAGCAACAATAGACAATCCATCAAACCTTGTTGAATGGATATTGGCCGAAATGTTAAATCAACCAGAATTATTTCAACAAGCCACAAATGAATTGGACAAAATAGTGGGCAAAGATAGATTGGTCCAAGAATCAGATATTCCAAATCTCAACTTCTTGAAGGCTTGTGCAAGAGAAACTCTCCGCCTCTACCCCATGGCTCCTTTCAATATTCCTCATGTCTCTGTTAATGACACAGTAGTTGGAAACTACTTGATACCAAAGGGTAGCCATGTATTGATTAAAAGAAGTGGGAGAAATCCATTAGTTTGGGTTGATCCACATAAATTCAAACCAGAACGTCATTTCAAGAATGGTGAGTCCAATATAGTTTTAACAGAGCCAGGTTTGAAGTTCATATCCTTTAGCACTGGAATGCGTAGTTGTCCTGGTTTCAAGCTTGGCACTACAATGACTGTTTTACTATTGGCTAGGTTGCTACATGGCTTCACTTGGAGTATACCTCCCACTACATCAACCATCAGCCTTGTCAAGTCTAAAGAAGATATGTTTCTTGCTGAGCCATTGGTGGTTGTCGCAAAACCAAGATTAGCAAAAGAATTGTACAACTTCTGA

Protein sequence

>MS.gene03932.t1

MIANNPAPMWIFKMMEDLNTEIACIRLGNVHIIPVTCPIIAREFLRKHDADFASRPITMASGIISNGYLTSAIAPFGEQWKKMKNIIVNDLLSPQRHRWLQDKRNEEADNLMFYVYNKCNNGDLVSVRFASQHYCGNVYRKMYFNTRYFGKGMKDGGPGLEEIEHVDAAFTLLKYIYAFSASDYMPCLRLLDLDGHKGKIKNAMKIMNKYHDSIIEERIKQWNDGSRTVEEDLLDVLISLKDVNNNPVLTKKEIKAQLIELMIATIDNPSNLVEWILAEMLNQPELFQQATNELDKIVGKDRLVQESDIPNLNFLKACARETLRLYPMAPFNIPHVSVNDTVVGNYLIPKGSHVLIKRSGRNPLVWVDPHKFKPERHFKNGESNIVLTEPGLKFISFSTGMRSCPGFKLGTTMTVLLLARLLHGFTWSIPPTTSTISLVKSKEDMFLAEPLVVVAKPRLAKELYNF