AlfalfaGEDB | MS.gene38428

M. sativa cultivar XinJiangDaYe / MS.gene38428

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38428.t1	XP_013460453.1	92.8	528	38	0	1	528	6	533	3.00E-294	1020.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38428.t1	Q6J541	63.7	531	187	2	1	526	1	530	2.9e-205	716.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38428.t1	A0A072UYH5	92.8	528	38	0	1	528	6	533	2.2e-294	1020.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008464	MS.gene38428	PPI
MS.gene011756	MS.gene38428	PPI
MS.gene02752	MS.gene38428	PPI
MS.gene028619	MS.gene38428	PPI
MS.gene03932	MS.gene38428	PPI
MS.gene048532	MS.gene38428	PPI
MS.gene049552	MS.gene38428	PPI
MS.gene049562	MS.gene38428	PPI
MS.gene049563	MS.gene38428	PPI
MS.gene052501	MS.gene38428	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38428.t1	MTR_3g467200	92.803	528	38	0	1	528	6	533	0.0	999
MS.gene38428.t1	MTR_3g467220	79.735	528	107	0	1	528	1	528	0.0	879
MS.gene38428.t1	MTR_3g465300	72.233	515	140	2	15	528	16	528	0.0	791
MS.gene38428.t1	MTR_3g467290	67.293	532	168	3	1	526	6	537	0.0	758
MS.gene38428.t1	MTR_8g073960	57.143	518	219	1	12	526	11	528	0.0	639
MS.gene38428.t1	MTR_8g073950	57.336	518	214	3	12	526	11	524	0.0	632
MS.gene38428.t1	MTR_8g076390	54.528	530	213	3	12	526	11	527	0.0	575
MS.gene38428.t1	MTR_8g076372	53.861	518	223	3	12	526	11	515	0.0	553
MS.gene38428.t1	MTR_7g087520	34.469	499	303	10	42	527	34	521	5.42e-95	298
MS.gene38428.t1	MTR_8g020940	32.121	495	315	10	41	528	32	512	4.53e-80	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38428.t1	AT4G39950	52.427	515	239	4	17	526	24	537	0.0	570
MS.gene38428.t1	AT4G39950	52.427	515	239	4	17	526	64	577	0.0	569
MS.gene38428.t1	AT2G22330	53.830	483	221	2	45	526	81	562	0.0	563
MS.gene38428.t1	AT2G22330	53.830	483	221	2	45	526	58	539	0.0	562
MS.gene38428.t1	AT5G05260	50.854	527	248	6	10	526	2	527	0.0	548
MS.gene38428.t1	AT5G05260	48.767	527	227	7	10	526	2	495	4.71e-177	508
MS.gene38428.t1	AT1G58260	46.080	523	268	6	13	526	8	525	9.56e-163	473
MS.gene38428.t1	AT1G79370	43.750	528	273	5	18	526	16	538	1.79e-157	460
MS.gene38428.t1	AT5G35917	46.029	491	212	6	45	526	42	488	2.71e-154	450
MS.gene38428.t1	AT1G16410	41.636	538	296	7	1	526	2	533	1.61e-147	434

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Find 126 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAAAAGGACTGGGA+TGG	0.631073	3.4:-63483373	None:intergenic
AAACACAGTTGAATGGACAT+TGG	0.637511	3.4:+63485039	MS.gene38428:CDS
AAACTTTATTCTTGTTATAT+TGG	0.206719	3.4:-63485527	None:intergenic
AACGTCATCTCAAGAATGAT+GGG	0.564268	3.4:+63485359	MS.gene38428:CDS
AACTTTATTCTTGTTATATT+GGG	0.261644	3.4:-63485526	None:intergenic
AAGAATTGGACAATATAGTT+GGG	0.473283	3.4:+63485104	MS.gene38428:CDS
AAGAATTGGCGGGCAATGGA+AGG	0.559305	3.4:-63483634	None:intergenic
AAGATTTGTTCTCTGCACGA+AGG	0.652510	3.4:+63483788	MS.gene38428:CDS
AAGGATATGAACTTCAATTC+TGG	0.360150	3.4:-63485403	None:intergenic
AAGGGAAGTCATGTACTGCT+TGG	0.539237	3.4:+63485277	MS.gene38428:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTAGGAGAAAGATAAA+AGG	-	chr3.4:63484321-63484340	None:intergenic	30.0%
AAGGATATGAACTTCAATTC+TGG	-	chr3.4:63485406-63485425	None:intergenic	30.0%
AAGTTCATATCCTTTAGTAC+AGG	+	chr3.4:63485412-63485431	MS.gene38428:CDS	30.0%
ACAATATAGTTGGGAAAGAT+AGG	+	chr3.4:63485113-63485132	MS.gene38428:CDS	30.0%
ACTAGACCAGGTATTTATAA+AGG	-	chr3.4:63484339-63484358	None:intergenic	30.0%
ATCAATGGCTTCAAGATAAA+AGG	+	chr3.4:63483812-63483831	MS.gene38428:CDS	30.0%
CACGTAAAACATAAGATTGT+CGG	-	chr3.4:63483848-63483867	None:intergenic	30.0%
GAAGAATTGGACAATATAGT+TGG	+	chr3.4:63485103-63485122	MS.gene38428:CDS	30.0%
GAAGTTGAGTTTAGGAATAT+CGG	-	chr3.4:63485152-63485171	None:intergenic	30.0%
GGAAATTACTTCATACCAAA+GGG	+	chr3.4:63485259-63485278	MS.gene38428:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	63483343	63485636	63483343	ID=MS.gene38428
chr3.4	mRNA	63483343	63485636	63483343	ID=MS.gene38428.t1;Parent=MS.gene38428
chr3.4	exon	63483343	63484299	63483343	ID=MS.gene38428.t1.exon1;Parent=MS.gene38428.t1
chr3.4	CDS	63483343	63484299	63483343	ID=cds.MS.gene38428.t1;Parent=MS.gene38428.t1
chr3.4	exon	63485007	63485636	63485007	ID=MS.gene38428.t1.exon2;Parent=MS.gene38428.t1
chr3.4	CDS	63485007	63485636	63485007	ID=cds.MS.gene38428.t1;Parent=MS.gene38428.t1

Gene Sequence

>MS.gene38428

ATGAGTTACACTCCTAGTTTCCTCTGGTTACCATCCCAGTCCTTTTGGCTTTTCTTGATTAACATTCTTTTAGGCTTTATGATAATCAAAACCATAAGATACTACATTATTGAGAATCCTAACAAACCTAAACTTCCCCCAGGTCCCAAACCATTGCCTATAGTTGGTAGTCTTCCTGAAATGCTTGCAAACAAACCTGCAACTAGGTGGATACACAAGAAAATGGAAGAATTGAACACTGAAATAGCATGTATTCGTCTAGGAAACGTCAATGTTATCCCTGTTACTTGTCCTTCCATTGCCCGCCAATTCTTGAGAAAACATGATGCTGATTTTGCATCAAGACCAACAACCATGGCTAGTGATATCATTTCCAATGGCTACGCGACCTCAATTCTTGTACCCTATGGTGAACAATGGAAAAAGATGAAGAAAATTCTTGTTAAAGATTTGTTCTCTGCACGAAGGCATCAATGGCTTCAAGATAAAAGGAACGATGAAGCCGACAATCTTATGTTTTACGTGTACAACAAATGCAAAAATGGTGGCCTTGTCAATGTAAGGACTGCTACTCAACATTATTGTGGTAATGTGTATAGAAAACTTTTTTTCAATAGAAGGTACTTTGGAAAAGGTATGAAGGATGGAGGGCCTGGTCTTGAGGAAGTTGAACATGTTGATGCTGCTTTCGTATTACTTAACTGTGTTTTTGCTTTCTCTGCATCTGATTATCTACCATGCTTGAGGTTACTTGACTTAGATGGTCATCAGGGCAAGGTAAAAAATGCAAAGAGGATAATTAACAATTATCATGATTCCCTAATTGAAGAGAGAATCCAACAATGGAATGATGGATCAAAGAATGTTGAAGATGACTTGCTAGATGTTTTGATCACGCTGAAAGATGCCAATGATAAACCATTATTGACAACGAAGGAGATCAAGGCACAAGTTATGGTAAGACTTCACTCACTTCCTTTTATCTTTCTCCTACCTTTATAAATACCTGGTCTAGTAGTAAAACGACACAACTTGAACTAGAAAGTCGAGGGTTTTGATTCATTGCTTATTTTAAAACAAGTGAAACGATTCATTCAGTTTGGTGAAGAGATTCATTGTTTTTCTTTGGAGAGTGAAACGATTCACTTTGATGAGTGAGATTCACTTTCTTAAAACAACAAAACTCACGATTTTTCAAAAGCTAGTGAAACGGTTCACTGTAAGATTGTGAAGACAAGATTATGTGAGTTACTTTGTTACACAAATTCTCGATATATAAGTTTCGGCATACATTCAAAACCATCTAAACCAAAATAAGTGATGCACTGTAATAGTGAAATGATTCATAAACCTAAATTTTTAACTTCATTTTCACACATATTTCCAAAACCTATATAAGTATTCTTTAAGTCCGAAAGTTTTCCATGCCTTGGACCGGGGCATCATCCCCTCACCCTAAATTTTGGTTAAGAAAGAAAAATAGGTTTACATATTAATTTTACCATTTAAATATTTGTGATGGCATGTATACATTTTTGAAAAGAATTTGTGTACGTATATTTAAAAATAATAATAGTACAATATATTTAAATTATGATTTGATTGCATATGTGCTTGGTATATTCAAATTAAACTCATTATATTCGCATTAAATTTCTATGTAGGAATTGATGTTGGCATTCGTAGACAATCCATCAAACACAGTTGAATGGACATTGGCTGAAATGTTAGATCAACCTGAACTCTTTGAAAAAGCCATAGAAGAATTGGACAATATAGTTGGGAAAGATAGGATGGTCCAAGAATCCGATATTCCTAAACTCAACTTCTTGAAGGCTTGTGCAAGAGAAGCGTTTCGCCTCCATCCCATAACAGATTTCAATGCTCCCCATGTTTCTTTGAATGATACAATGGTTGGAAATTACTTCATACCAAAGGGAAGTCATGTACTGCTTGGAAGAAGTGGTCTTGGGAGAAATCCAAAAGTTTGGACTGAACCCTACAAATTCAAACCAGAACGTCATCTCAAGAATGATGGGTCAGATATTGATTTGACAGAGCCAGAATTGAAGTTCATATCCTTTAGTACAGGAAGGCGTGGTTGTCCTGGTATCATGCTTGGCTCCACAATGACTATAATGCTATTAGCTAGGTTACTCCATGGCTTCACTTGGTGTGTACCTCCCAATATAACAAGAATAAAGTTTGTCGAGTCCAATGGTGTTATGGTTCTTGATGAGCCATTAACGGTGGTAGCAAAGCCACGATTAGCAGCAGAATTGTATGACTTTTGA

Protein sequence

>MS.gene38428.t1

MSYTPSFLWLPSQSFWLFLINILLGFMIIKTIRYYIIENPNKPKLPPGPKPLPIVGSLPEMLANKPATRWIHKKMEELNTEIACIRLGNVNVIPVTCPSIARQFLRKHDADFASRPTTMASDIISNGYATSILVPYGEQWKKMKKILVKDLFSARRHQWLQDKRNDEADNLMFYVYNKCKNGGLVNVRTATQHYCGNVYRKLFFNRRYFGKGMKDGGPGLEEVEHVDAAFVLLNCVFAFSASDYLPCLRLLDLDGHQGKVKNAKRIINNYHDSLIEERIQQWNDGSKNVEDDLLDVLITLKDANDKPLLTTKEIKAQVMELMLAFVDNPSNTVEWTLAEMLDQPELFEKAIEELDNIVGKDRMVQESDIPKLNFLKACAREAFRLHPITDFNAPHVSLNDTMVGNYFIPKGSHVLLGRSGLGRNPKVWTEPYKFKPERHLKNDGSDIDLTEPELKFISFSTGRRGCPGIMLGSTMTIMLLARLLHGFTWCVPPNITRIKFVESNGVMVLDEPLTVVAKPRLAAELYDF