AlfalfaGEDB | MS.gene27241

M. sativa cultivar XinJiangDaYe / MS.gene27241

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27241.t1	XP_003629158.1	95.9	512	21	0	1	512	20	531	3.20E-293	1016.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27241.t1	Q6J540	58.3	511	210	2	1	509	21	530	4.7e-176	619.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27241.t1	G7L9G6	95.9	512	21	0	1	512	20	531	2.3e-293	1016.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008464	MS.gene27241	PPI
MS.gene008653	MS.gene27241	PPI
MS.gene011756	MS.gene27241	PPI
MS.gene02752	MS.gene27241	PPI
MS.gene028619	MS.gene27241	PPI
MS.gene03929	MS.gene27241	PPI
MS.gene03932	MS.gene27241	PPI
MS.gene041920	MS.gene27241	PPI
MS.gene048532	MS.gene27241	PPI
MS.gene049552	MS.gene27241	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27241.t1	MTR_8g073960	95.898	512	21	0	1	512	20	531	0.0	1027
MS.gene27241.t1	MTR_8g073950	95.312	512	20	2	1	512	20	527	0.0	1009
MS.gene27241.t1	MTR_8g076390	91.985	524	17	2	1	512	20	530	0.0	951
MS.gene27241.t1	MTR_8g076372	91.992	512	28	2	1	512	20	518	0.0	922
MS.gene27241.t1	MTR_3g467290	61.462	506	192	2	7	509	32	537	0.0	651
MS.gene27241.t1	MTR_3g467220	60.314	509	198	2	1	509	22	526	0.0	643
MS.gene27241.t1	MTR_3g465300	59.486	506	199	4	7	511	28	528	0.0	631
MS.gene27241.t1	MTR_3g467200	61.088	478	183	1	34	511	59	533	0.0	626
MS.gene27241.t1	MTR_7g087520	33.936	498	308	9	22	509	34	520	3.23e-95	298
MS.gene27241.t1	MTR_3g436540	31.717	495	313	11	24	511	39	515	4.58e-77	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27241.t1	AT4G39950	53.564	491	223	3	20	509	51	537	0.0	571
MS.gene27241.t1	AT4G39950	53.564	491	223	3	20	509	91	577	0.0	570
MS.gene27241.t1	AT5G05260	52.761	489	226	4	25	509	40	527	0.0	559
MS.gene27241.t1	AT2G22330	51.181	508	242	4	3	509	60	562	0.0	555
MS.gene27241.t1	AT2G22330	51.181	508	242	4	3	509	37	539	0.0	555
MS.gene27241.t1	AT5G05260	49.693	489	209	5	25	509	40	495	9.20e-177	506
MS.gene27241.t1	AT5G35917	47.862	491	206	6	25	509	42	488	2.63e-167	482
MS.gene27241.t1	AT1G58260	44.574	516	276	4	1	509	13	525	5.56e-158	460
MS.gene27241.t1	AT1G79370	45.635	504	256	6	22	509	37	538	5.97e-150	440
MS.gene27241.t1	AT1G16410	41.200	500	284	5	17	509	37	533	1.11e-137	409

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Find 122 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAAGATTAGAACCAA+AGG	0.612022	8.3:-29245978	MS.gene27241:CDS
AAAGGTTTATGGTTTATATT+AGG	0.256011	8.3:-29245960	None:intergenic
AAATAAACGTGGCTACCTTT+TGG	0.286083	8.3:+29246304	None:intergenic
AAATGTAATCAAGTCCAAAC+TGG	0.344680	8.3:+29246174	None:intergenic
AACAAATGCACTGAAATTGG+TGG	0.633106	8.3:-29247181	MS.gene27241:CDS
AACAATGGAAGAATGGAAAA+AGG	0.328220	8.3:-29246862	MS.gene27241:CDS
AACATAACGTACAATGTTAT+CGG	0.361803	8.3:+29247207	None:intergenic
AAGCCATTTATGTCTAAGAG+GGG	0.673154	8.3:+29247252	None:intergenic
AAGGTAGCCACGTTTATTTA+AGG	0.305071	8.3:-29246300	MS.gene27241:CDS
AAGTCAAGACCCCTCAAACA+TGG	0.602449	8.3:+29246965	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTAATCAAGTCCAAAC+TGG	+	chr8.3:29247439-29247458	None:intergenic	30.0%
AACAATGGAAGAATGGAAAA+AGG	-	chr8.3:29246748-29246767	MS.gene27241:intron	30.0%
AATGTAATCAAGTCCAAACT+GGG	+	chr8.3:29247438-29247457	None:intergenic	30.0%
AGAATTCAACAATGGAAGAA+TGG	-	chr8.3:29246741-29246760	MS.gene27241:intron	30.0%
AGATTAGAACCAAAGGTTTA+TGG	-	chr8.3:29247639-29247658	MS.gene27241:CDS	30.0%
AGTTTGGACTTGATTACATT+TGG	-	chr8.3:29247438-29247457	MS.gene27241:CDS	30.0%
CTTAGAGGAAATAGAATATG+TGG	-	chr8.3:29246566-29246585	MS.gene27241:CDS	30.0%
GAATTCTATCCTCAATGATA+GGG	+	chr8.3:29246728-29246747	None:intergenic	30.0%
GCTAATTACTTTATCCCAAA+AGG	-	chr8.3:29247291-29247310	MS.gene27241:CDS	30.0%
TACCTTCACATAGTTTAGTT+TGG	+	chr8.3:29247193-29247212	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	29245961	29247671	29245961	ID=MS.gene27241
chr8.3	mRNA	29245961	29247671	29245961	ID=MS.gene27241.t1;Parent=MS.gene27241
chr8.3	exon	29246766	29247671	29246766	ID=MS.gene27241.t1.exon1;Parent=MS.gene27241.t1
chr8.3	CDS	29246766	29247671	29246766	ID=cds.MS.gene27241.t1;Parent=MS.gene27241.t1
chr8.3	exon	29245961	29246593	29245961	ID=MS.gene27241.t1.exon2;Parent=MS.gene27241.t1
chr8.3	CDS	29245961	29246593	29245961	ID=cds.MS.gene27241.t1;Parent=MS.gene27241.t1

Gene Sequence

>MS.gene27241

ATGTTACTTGTCTATAAACTCCTCATCAAACACCAACGTAGTACCCAAAAATCTGAAAAACCAAAACCAAAACTCCCTCCTGGTCCAACACCTTGGCCAATAGTAGGCAACCTCCCTGAAATGCTTGCAAATAGGCCAACATTTAGATGGATACAAAAAATAATGAATGATCTCAACACAGAAATTGCTTGCATCCGTTTAGGTAACGTTCATGTGATTACAATTAGCAATCCTGAAATTGCACGTGAATTATGTATAAAACAAGATGCAACTTTTGCATCAAGACCAAGTAGTTGGTCAAATGAGTATGTTACTAATGGTTATCTAACCACAGCACTCACTCCCTTTGGAGAACAATGGAAGAAAGTGAAGAAAGTTATTAGCAATGAGCTTGTTTCCCCTCTTAGACATAAATGGCTTCATGATAAGAGAGTGGAAGAAGCCGATAACATTGTACGTTATGTTTATAACAAATGCACTGAAATTGGTGGTGATGGAACTGTGAATGTGAGTGTTGCTGCACAATATTATTCAGGGAATGTTATTAGGAGGTTGCTTTTGAATAAAAGGTACTTTGGAAATGGTAGTGAAGATTATGGACCTGGCTTAGAGGAAATAGAATATGTGGAAGCAATTTTTACTGTTTTGCAATACCTCTTTGCTTTTTCTGTTTCTGATTTCATGCCATGTTTGAGGGGTCTTGACTTGGATGGTCATGAAAGGATCATTAAGAAGGCTTGTAAGATCATGAAGAAATATCATGACCCTATCATTGAGGATAGAATTCAACAATGGAAGAATGGAAAAAGGATAGAAAAAGAAGATTTGCTTGATGTTCTCATCTCACTCAAAGATGGTGAAAACAATGCCATTTTGACTGAGCAGGAAATCAAGTCCAATATTTTGGTATATATCTTAAACTCTTCTTTTCATCTCCTTTTAGCTAGCTGGTCATTTATTATTTATTTTCTAATATGCAACAAACAATCCCTTATTTCTAATGGACTAAATAAATTATTAAAAATTTAATATTGTATTATTGTCTTGAAAATGATATTAATGGGGATAAATTTCACAGGAATTGACACTTGCAGCCGTTGATAATCCATCGAATGCAGTTGAATGGGGACTTGCTGAATTGATAAATCAACCAGAGCTACTTAAAAAAGCGACTGAAGAATTAGACAGTGTAGTTGGAAAAGGAAGGCTAGTGCAAGAATACGATTTTCCCAAACTAAACTATGTGAAGGTATGTGCAAAAGAAGCTTTTCGTCGTCACCCAATTTGCGATTTCAACCTTCCCCATGTTGCAATGAAAGACACAACTCTTGCTAATTACTTTATCCCAAAAGGTAGCCACGTTTATTTAAGGAGACAAGGACTTGGCACAAACCCTAGAGTTTGGAAAGAACCACTTAAGTTCAATCCAGAACGACATCTTAAGATCGATGGATCTAATTTGAGTTTGGCAGATCCCAGTTTGGACTTGATTACATTTGGTACCGGAAGGCGTGGATGTTCAGGCGTCATGCTTGGAACTTCAATGACTATTATGTTATTTGCAAGGTTGATCCATGGTTTCACGTGGAGTTTGCCACCAAACCAGTCTAGTATTGACCTCTCTGAATCTCATGGAGGAACCACAAAAGCTAAGCCACTTGTGGCAGTGGCAAAGCCAAGATTAGAACCAAAGGTTTATGGTTTATATTAG

Protein sequence

>MS.gene27241.t1

MLLVYKLLIKHQRSTQKSEKPKPKLPPGPTPWPIVGNLPEMLANRPTFRWIQKIMNDLNTEIACIRLGNVHVITISNPEIARELCIKQDATFASRPSSWSNEYVTNGYLTTALTPFGEQWKKVKKVISNELVSPLRHKWLHDKRVEEADNIVRYVYNKCTEIGGDGTVNVSVAAQYYSGNVIRRLLLNKRYFGNGSEDYGPGLEEIEYVEAIFTVLQYLFAFSVSDFMPCLRGLDLDGHERIIKKACKIMKKYHDPIIEDRIQQWKNGKRIEKEDLLDVLISLKDGENNAILTEQEIKSNILELTLAAVDNPSNAVEWGLAELINQPELLKKATEELDSVVGKGRLVQEYDFPKLNYVKVCAKEAFRRHPICDFNLPHVAMKDTTLANYFIPKGSHVYLRRQGLGTNPRVWKEPLKFNPERHLKIDGSNLSLADPSLDLITFGTGRRGCSGVMLGTSMTIMLFARLIHGFTWSLPPNQSSIDLSESHGGTTKAKPLVAVAKPRLEPKVYGLY