AlfalfaGEDB | MS.gene05138

M. sativa cultivar XinJiangDaYe / MS.gene05138

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05138.t1	XP_013460458.1	81.1	518	93	2	3	516	21	537	2.70E-255	891

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05138.t1	Q6J540	64.1	521	178	5	1	516	14	530	3.8e-197	689.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05138.t1	A0A072UYH9	81.1	518	93	2	3	516	21	537	2.0e-255	891.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008451	MS.gene05138	PPI
MS.gene008464	MS.gene05138	PPI
MS.gene008474	MS.gene05138	PPI
MS.gene008653	MS.gene05138	PPI
MS.gene008654	MS.gene05138	PPI
MS.gene010418	MS.gene05138	PPI
MS.gene011756	MS.gene05138	PPI
MS.gene017540	MS.gene05138	PPI
MS.gene017541	MS.gene05138	PPI
MS.gene023218	MS.gene05138	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05138.t1	MTR_3g467290	80.925	519	94	2	3	517	21	538	0.0	902
MS.gene05138.t1	MTR_3g467220	65.184	517	171	4	5	518	18	528	0.0	712
MS.gene05138.t1	MTR_3g467200	65.049	515	171	3	5	516	23	531	0.0	685
MS.gene05138.t1	MTR_3g465300	61.420	521	187	6	3	518	17	528	0.0	679
MS.gene05138.t1	MTR_8g073960	59.038	520	205	4	3	518	15	530	0.0	637
MS.gene05138.t1	MTR_8g073950	58.915	516	202	5	7	518	17	526	0.0	626
MS.gene05138.t1	MTR_8g076390	56.203	532	200	6	3	518	15	529	0.0	575
MS.gene05138.t1	MTR_8g076372	55.962	520	208	6	3	518	15	517	0.0	552
MS.gene05138.t1	MTR_7g087520	34.563	515	314	10	15	516	16	520	1.63e-93	294
MS.gene05138.t1	MTR_3g467250	63.090	233	41	6	61	293	1	188	1.78e-91	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05138.t1	AT4G39950	51.521	526	236	7	1	516	21	537	0.0	558
MS.gene05138.t1	AT4G39950	51.521	526	236	7	1	516	61	577	0.0	557
MS.gene05138.t1	AT2G22330	51.670	509	232	7	13	516	63	562	0.0	548
MS.gene05138.t1	AT2G22330	51.468	511	234	7	13	518	40	541	0.0	548
MS.gene05138.t1	AT5G05260	50.913	493	229	8	32	516	40	527	0.0	526
MS.gene05138.t1	AT5G05260	48.479	493	209	8	32	516	40	495	1.21e-167	484
MS.gene05138.t1	AT1G79370	44.717	530	270	8	4	516	15	538	1.75e-155	454
MS.gene05138.t1	AT1G58260	44.275	524	274	8	4	516	9	525	1.71e-154	451
MS.gene05138.t1	AT5G35917	44.422	493	220	8	32	516	42	488	4.00e-149	436
MS.gene05138.t1	AT1G16410	40.304	526	293	8	6	516	14	533	2.01e-132	395

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Find 119 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTGAATGAAAATAA+TGG	0.507661	3.4:+64379708	MS.gene05138:CDS
AACATTATCCAATTCTTCAG+TGG	0.592036	3.4:-64381109	None:intergenic
AAGAATTCAAGTGCAATGAT+AGG	0.356723	3.4:-64379462	None:intergenic
AAGTTCCTATCATTTAGTAC+TGG	0.508257	3.4:+64381423	MS.gene05138:CDS
AATACAAGGTACTTTGGAGA+AGG	0.565021	3.4:+64379795	MS.gene05138:CDS
AATGATAGGAACTTCAAATC+TGG	0.427618	3.4:-64381414	None:intergenic
AATGGTGATAGATATCCTGG+AGG	0.743538	3.4:+64381561	MS.gene05138:CDS
ACAACAGCTCTTACACCCTT+TGG	0.381528	3.4:+64379558	MS.gene05138:CDS
ACCTACTATAGGCCATGGTT+TGG	0.408704	3.4:-64379316	None:intergenic
ACTGGAAGACGTGGTTGTCC+TGG	0.463849	3.4:+64381441	MS.gene05138:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAGGAGAGAGAAAAA+TGG	-	chr3.4:64380365-64380384	None:intergenic	30.0%
AACATTATCCAATTCTTCAG+TGG	-	chr3.4:64381112-64381131	None:intergenic	30.0%
AACGCCATCTAAAAAATGAT+GGG	+	chr3.4:64381370-64381389	MS.gene05138:CDS	30.0%
AAGAATTCAAGTGCAATGAT+AGG	-	chr3.4:64379465-64379484	None:intergenic	30.0%
AAGTTCCTATCATTTAGTAC+TGG	+	chr3.4:64381423-64381442	MS.gene05138:CDS	30.0%
AATGATAGGAACTTCAAATC+TGG	-	chr3.4:64381417-64381436	None:intergenic	30.0%
AGAATTCAAGTGCAATGATA+GGG	-	chr3.4:64379464-64379483	None:intergenic	30.0%
AGCAAATGACTCAATTAATC+AGG	+	chr3.4:64380413-64380432	MS.gene05138:intron	30.0%
ATAATGATCCAATCATTGAG+AGG	+	chr3.4:64379991-64380010	MS.gene05138:CDS	30.0%
ATATCAGTAGACATGGATAT+TGG	-	chr3.4:64379519-64379538	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	64379210	64381638	64379210	ID=MS.gene05138
chr3.4	mRNA	64379210	64381638	64379210	ID=MS.gene05138.t1;Parent=MS.gene05138
chr3.4	exon	64379210	64380145	64379210	ID=MS.gene05138.t1.exon1;Parent=MS.gene05138.t1
chr3.4	CDS	64379210	64380145	64379210	ID=cds.MS.gene05138.t1;Parent=MS.gene05138.t1
chr3.4	exon	64381018	64381638	64381018	ID=MS.gene05138.t1.exon2;Parent=MS.gene05138.t1
chr3.4	CDS	64381018	64381638	64381018	ID=cds.MS.gene05138.t1;Parent=MS.gene05138.t1

Gene Sequence

>MS.gene05138

TTCTCTTGGACTTTTTTCCTTGTTATGTTTTTTGGATTTATGGTAATCAAAACCTTAAGATCCGACTTCATTGAGAACTCTACCAAACCCAAACTTCCCCCAGGTCCCAAACCATGGCCTATAGTAGGTAATCTTCCCAAAATGCTTGCAAACAGACCAACAAATAGGTGGATACACAAAATAATGGAAGAAATGAACACCGAAATAGCATGTATTCGCTTAGGAAATGTCCATGTAATTCCTGTTAGTTGCCCTATCATTGCACTTGAATTCTTGAGAAAGAATGATGCTACTTTTGCATCAAGACCAATATCCATGTCTACTGATATCATAAGCAAAGGTTTCTTGACAACAGCTCTTACACCCTTTGGAGAACAATGGAAGAAAATGAAAAAAATATTTGTCAATGAACTGTTCTCCCCTCACAAGCATCAATGGCTCACTAACAAAAGAAATGAAGAAGCCGATAACCTAATGTTTCATGTCTTCAACCAATGCAAAACTGTGAATGAAAATAATGGTCTTGTGAACGTTAGGAATGCTGCAACACATTATTGTTGTAATTTGATGAGGAACTTGTTTTTTAATACAAGGTACTTTGGAGAAGGTAGGAATGATGGAGGTCCTGGTTTTGAGGAAGTGGAATATCTAGATGCCATGTTCACATTGCTTAGGTATGTGTTTTCCTTTTGTGTTTCTGATTATATGCCATTGTTGAGGGGACTTGACATTGATGGTCATGAGAGAAAGATGAAGGATGCTATGAGTATTGTGAACAAGTATAATGATCCAATCATTGAGAGGAGAATTGAAAAATGGAAAGATGGATCAAAGACTACTGCCGATGTAGAAGACATACTTGATCTCCTAATCTCCCTCAAAGATGCCAACAACATACCATTATTGACATCAGATGAAATCAAAGCGCAAATTCTGGTAATACTCCCTCTCTCTCTCATAGTAACCGACCCTTTTGTAAAAAAAATGTTGTCCTAAAATAACTGACCCATTTAACTTTTCAATAAAATAATAATTCTTTTTTTCTAATTATAACTCTAATTAATATTGTTTTCATCACTCCCAATTCAATATATTCCACTTTGTATGTATGACAGTAGAGAATGCACCAATAAATAACAAGAGCACTTAAAACCATTTTTCTCTCTCCTTCATTTATACATTTTTCTTAATATGTGTGAAATGAGCAAATGACTCAATTAATCAGGGAGTAATTCTTTTCACTTTTGTTTTATTTTGTATGCATTATCACTATAAGAAAAACACTCATTTGTGGTCAACTTCAAAAAGATTTGTTGCTTCAAAAGGCCCTCACAAATTAATGGTAAAAAAAGCCCTCACAATTATGTCCTCAAAATTATTGGCAAAAAGTACCCCACAAATTGTAAAATTCAAATTTGTTGTTAATTTGTGGCTGAAAAAATCATCTGAAATTTTCCTTCAAAATTAAAAAATCATCTGAAATTTGGAGGGATTTTTCTGCCCCAAAATCTATTATTGGATAACGTGGTCATTATCATTAAATAGTTTGGGTCAAATGGATGTGACTAGCAAAATTCAATATAGAATGGAATAATATATGCTACCTAGTTTCTTATTGGAGGCACATCAAATACTGAATAAGATAATACATTGTCATTTTCATATTATACGATATCATTATTCAATCTTATCTAGTTCATATTAGAGGCATGTATAAGATAGATATATGCTATCTACACATTCTTGGTAGAAAATACTAAAGACCATTTCAAACCATAAGCTCACTATGTTCCTGTCCCTATTTATAGGAACTTATGTTGGGAGGATTGGACAATCCATCACATGCAGTTGAATTTGCTTTAGCGGAAATGATAAATCAGCCAAAGATACTTCAACGAGCCACTGAAGAATTGGATAATGTTGTTGGTAAGCAAAGACTAGTCCAAGAATCAGATATTCCAAACCTCAACTATGTGAAAGCTTGTGTTAGAGAAACTTTTCGTCTTCATCCCGTTACAGCTTTTAATCTTCCCCATCTTGCTATGGACAACATAATGGTTGGTAATTACATCATTCCAAAAGGTAGCCATGTAATTCTAAGCAAACCAGGTCTTGGACGAAACCCAAAAGTTTGGAACGAACCTCACAAGTTTAAACCGGAACGCCATCTAAAAAATGATGGGTCTATGGTAGTTTTGGCAGAACCAGATTTGAAGTTCCTATCATTTAGTACTGGAAGACGTGGTTGTCCTGGAATTGTGCTTGGAACTACAATGACTATGATGTTAATGTGTAGGTTGATCCATGGCTTCAATTGGAGTGCACCTCCCAATGATCTTCTTGAGTACTCCAATGGTGATAGATATCCTGGAGGGCCACTTGTGGCAACAGCTAAGCCAAGATTGGCAGCAGAAATGTATCAGCTATAA

Protein sequence

>MS.gene05138.t1

FSWTFFLVMFFGFMVIKTLRSDFIENSTKPKLPPGPKPWPIVGNLPKMLANRPTNRWIHKIMEEMNTEIACIRLGNVHVIPVSCPIIALEFLRKNDATFASRPISMSTDIISKGFLTTALTPFGEQWKKMKKIFVNELFSPHKHQWLTNKRNEEADNLMFHVFNQCKTVNENNGLVNVRNAATHYCCNLMRNLFFNTRYFGEGRNDGGPGFEEVEYLDAMFTLLRYVFSFCVSDYMPLLRGLDIDGHERKMKDAMSIVNKYNDPIIERRIEKWKDGSKTTADVEDILDLLISLKDANNIPLLTSDEIKAQILELMLGGLDNPSHAVEFALAEMINQPKILQRATEELDNVVGKQRLVQESDIPNLNYVKACVRETFRLHPVTAFNLPHLAMDNIMVGNYIIPKGSHVILSKPGLGRNPKVWNEPHKFKPERHLKNDGSMVVLAEPDLKFLSFSTGRRGCPGIVLGTTMTMMLMCRLIHGFNWSAPPNDLLEYSNGDRYPGGPLVATAKPRLAAEMYQL