AlfalfaGEDB | MS.gene05139

M. sativa cultivar XinJiangDaYe / MS.gene05139

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05139.t1	XP_013460458.1	81.9	458	79	1	1	454	80	537	2.30E-226	794.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05139.t1	Q6J540	63.5	460	158	6	1	454	75	530	2.2e-169	596.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05139.t1	A0A072UYH9	81.9	458	79	1	1	454	80	537	1.7e-226	794.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008464	MS.gene05139	PPI
MS.gene008653	MS.gene05139	PPI
MS.gene011756	MS.gene05139	PPI
MS.gene02752	MS.gene05139	PPI
MS.gene028619	MS.gene05139	PPI
MS.gene03929	MS.gene05139	PPI
MS.gene03932	MS.gene05139	PPI
MS.gene041920	MS.gene05139	PPI
MS.gene048532	MS.gene05139	PPI
MS.gene049552	MS.gene05139	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05139.t1	MTR_3g467290	81.699	459	80	1	1	455	80	538	0.0	803
MS.gene05139.t1	MTR_3g467200	64.770	457	153	3	1	454	80	531	0.0	633
MS.gene05139.t1	MTR_3g467220	63.834	459	158	4	1	456	75	528	0.0	620
MS.gene05139.t1	MTR_3g465300	62.092	459	164	4	1	456	77	528	0.0	610
MS.gene05139.t1	MTR_8g073960	59.348	460	180	3	1	456	74	530	0.0	570
MS.gene05139.t1	MTR_8g073950	58.696	460	183	3	1	456	70	526	0.0	564
MS.gene05139.t1	MTR_8g076390	55.932	472	176	5	1	456	74	529	0.0	532
MS.gene05139.t1	MTR_8g076372	55.652	460	184	5	1	456	74	517	4.91e-179	511
MS.gene05139.t1	MTR_3g467250	62.338	231	43	4	1	231	2	188	2.24e-92	278
MS.gene05139.t1	MTR_7g087520	33.991	456	286	5	8	454	71	520	1.37e-87	277

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05139.t1	AT2G22330	52.711	461	206	6	1	456	88	541	4.76e-177	507
MS.gene05139.t1	AT2G22330	52.711	461	206	6	1	456	111	564	6.79e-177	507
MS.gene05139.t1	AT4G39950	52.838	458	206	5	1	454	86	537	1.76e-176	505
MS.gene05139.t1	AT4G39950	52.838	458	206	5	1	454	126	577	1.44e-175	504
MS.gene05139.t1	AT5G05260	50.976	461	215	6	1	454	71	527	2.69e-170	489
MS.gene05139.t1	AT5G05260	48.373	461	195	6	1	454	71	495	4.93e-154	446
MS.gene05139.t1	AT1G79370	45.763	472	235	7	1	454	70	538	1.09e-140	414
MS.gene05139.t1	AT1G58260	44.924	463	242	5	1	454	67	525	1.09e-139	411
MS.gene05139.t1	AT5G35917	44.372	462	203	8	1	454	73	488	6.27e-135	397
MS.gene05139.t1	AT1G16410	41.164	464	258	7	1	454	75	533	1.56e-120	362

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Find 99 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTCTTGTGAATGTT+AGG	0.425753	3.4:+64391334	MS.gene05139:CDS
AACATTATCCAATTCTTCAG+TGG	0.592036	3.4:-64392348	None:intergenic
AAGAATTCAAGTGCAATGAT+TGG	0.416586	3.4:-64391075	None:intergenic
AAGTTCCTATCATTTAGTAC+TGG	0.508257	3.4:+64392662	MS.gene05139:CDS
AATACAAGGTACTTTGGAGA+AGG	0.565021	3.4:+64391405	MS.gene05139:CDS
AATCCTAAGCAATGTGAACA+TGG	0.595026	3.4:-64391475	None:intergenic
AATGATAGGAACTTCAAATC+TGG	0.427618	3.4:-64392653	None:intergenic
AATGGTGATAGATATCCTGG+AGG	0.743538	3.4:+64392800	MS.gene05139:CDS
ACAACAGCTCTTACACCCTT+TGG	0.381528	3.4:+64391171	MS.gene05139:CDS
ACTGGAAGGCGTGGTTGTCC+TGG	0.438168	3.4:+64392680	MS.gene05139:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	64391006	64392877	64391006	ID=MS.gene05139
chr3.4	mRNA	64391006	64392877	64391006	ID=MS.gene05139.t1;Parent=MS.gene05139
chr3.4	exon	64391006	64391755	64391006	ID=MS.gene05139.t1.exon1;Parent=MS.gene05139.t1
chr3.4	CDS	64391006	64391755	64391006	ID=cds.MS.gene05139.t1;Parent=MS.gene05139.t1
chr3.4	exon	64392257	64392877	64392257	ID=MS.gene05139.t1.exon2;Parent=MS.gene05139.t1
chr3.4	CDS	64392257	64392877	64392257	ID=cds.MS.gene05139.t1;Parent=MS.gene05139.t1

Gene Sequence

>MS.gene05139

ATGGAAGAAATGAACACCGAAATAGCATGTATTCGCTTAGGAAATGTCCATGTAATTCCTGTTAGTTGCCCAATCATTGCACTTGAATTCTTGAGAAAGAATGATGCTACTTTTGCATCAAGACCAATATCCATGTCTACTGATATCATAAGCAAAGGTTTCTTGACAACAGCTCTTACACCCTTTGGAGAACAATGGAAGAAAATGAAGAAAATATTTGTCCACGAAGTGTTCTCACCCCAAAAACATCAATGGCTCACAAACAAAAGGAATGAAGAAGCCGATAACCTAATATTTTATGTCTTCAACAAATGCAAAAATGTGAATGAAAATGGTCTTGTGAATGTTAGGAATGCTGCAACACATTATTGTTGTAATTTGATGAGGAACTTGTTTTTTAATACAAGGTACTTTGGAGAAGGTAGGAATGATGGAGGTCCTGGTTTTGAGGAAGTGGAATATGTAGATGCCATGTTCACATTGCTTAGGATTGTGTTTTCCTTTTGTGTTTCTGATTATATGCCATTGTTGAGGGGACTTGACATTGATGGTCATGAGAGAAAGATGAAGGATGCTATGAGTATTGTGAACAAGTATAATGATCCAATCATTGAGAGGAGAATTGAAAAATGGAAAGATGGATCAAAGACTAATTCCGATATAGAAGACATACTTGATCTCCTAATCTCCCTCAAAGATGCCAACGACATACCATTATTGACATCAGATGAAATCAAAGCGCAAATTCTGGTAATAATTCTTTTCACTTTTGTTTTATTTTTTTATGCATTATCACTATAAGAAAAACACTCATTTGTGGTCAACTTCAAAAAGATTTGTTGCTTCAAAAGGCCCTCACAAATTAATGGTAAAAAAAAGCCCTCACAATTATGTCCACAAAATTATTGGCAAAAAAAAAAAAATTATGGGCAAAAAGTACCTCACAAATTGTAAAATTCAAATTTGTTGTTAATTTGTGGCTGAAAAAATCATCTAAAATTTGGAGGGATTTTTCTGCCTCAAAATCTATTATGGGATAATGTGGTCCTTATCATTAAATAGTTTGTGTCAAATGGATGTGACTAGCAAAATTCAATATTATTCAACTCTATTATTATATATCTTATCTAGTTCATATTAGAGGCACATCAAATGCTGTATAAGATATATGCTATCTACACATTTTTCGTAGAAAACACTAAAGACCATTTTCAAGCCATAAGCTCACTATGTTCCTGTCACTATTTATAGGAACTTATGTTGGGAGGATTGGACAATCCATCACATGCAGTTGAATTTGCTTTAGCAGAAATGATAAATCAGCCAAAGATACTTCAACGAGCCACTGAAGAATTGGATAATGTTGTTGGTAAGCAAAGACTAGTCCAAGAATCAGATATTCCAAACCTCAACTATGTGAAAGCTTGTGTAAGAGAAACTTTTCGTCTTCATCCCGTTACAGCTTTTAATCTTCCCCATCTTGCTATGGACAACATAATGGTTGGTAATTACATCATTCCAAAAGGTAGCCATGTAATTCTAAGCAAACCAGGTCTTGGACGCAACCCAAAAGTTTGGAACGAACCTCACAAGTTTAAACCGGAACGCCATCTAAAAAATGATGGGTCGGTGGTAGTTTTGGTAGAACCAGATTTGAAGTTCCTATCATTTAGTACTGGAAGGCGTGGTTGTCCTGGAATTGTGCTTGGAACTACAATGACTATGATGTTAATGTGTAGGTTGATCCATGGCTTCAATTGGAGTGCACCTCCCAATGATCTTCTTGAGTACTCCAATGGTGATAGATATCCTGGAGGGCCACTTGTGGCAACAGCTAAGCCAAGATTGGCACCAGAAATGTATCAGCTATAA

Protein sequence

>MS.gene05139.t1

MEEMNTEIACIRLGNVHVIPVSCPIIALEFLRKNDATFASRPISMSTDIISKGFLTTALTPFGEQWKKMKKIFVHEVFSPQKHQWLTNKRNEEADNLIFYVFNKCKNVNENGLVNVRNAATHYCCNLMRNLFFNTRYFGEGRNDGGPGFEEVEYVDAMFTLLRIVFSFCVSDYMPLLRGLDIDGHERKMKDAMSIVNKYNDPIIERRIEKWKDGSKTNSDIEDILDLLISLKDANDIPLLTSDEIKAQILELMLGGLDNPSHAVEFALAEMINQPKILQRATEELDNVVGKQRLVQESDIPNLNYVKACVRETFRLHPVTAFNLPHLAMDNIMVGNYIIPKGSHVILSKPGLGRNPKVWNEPHKFKPERHLKNDGSVVVLVEPDLKFLSFSTGRRGCPGIVLGTTMTMMLMCRLIHGFNWSAPPNDLLEYSNGDRYPGGPLVATAKPRLAPEMYQL