AlfalfaGEDB | MS.gene23794

M. sativa cultivar XinJiangDaYe / MS.gene23794

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23794.t1	XP_003629158.1	96.1	512	20	0	1	512	20	531	5.00E-294	1019.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23794.t1	Q6J540	58.3	511	210	2	1	509	21	530	6.2e-176	618.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23794.t1	G7L9G6	96.1	512	20	0	1	512	20	531	3.6e-294	1019.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008464	MS.gene23794	PPI
MS.gene028619	MS.gene23794	PPI
MS.gene049562	MS.gene23794	PPI
MS.gene052501	MS.gene23794	PPI
MS.gene052820	MS.gene23794	PPI
MS.gene052823	MS.gene23794	PPI
MS.gene05753	MS.gene23794	PPI
MS.gene23794	MS.gene90448	PPI
MS.gene23794	MS.gene049551	PPI
MS.gene23794	MS.gene028244	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23794.t1	MTR_8g073960	96.094	512	20	0	1	512	20	531	0.0	1030
MS.gene23794.t1	MTR_8g073950	95.898	512	17	2	1	512	20	527	0.0	1014
MS.gene23794.t1	MTR_8g076390	92.939	524	12	2	1	512	20	530	0.0	961
MS.gene23794.t1	MTR_8g076372	92.969	512	23	2	1	512	20	518	0.0	931
MS.gene23794.t1	MTR_3g467290	61.067	506	194	2	7	509	32	537	0.0	647
MS.gene23794.t1	MTR_3g467220	59.921	509	200	2	1	509	22	526	0.0	640
MS.gene23794.t1	MTR_3g465300	59.486	506	199	4	7	511	28	528	0.0	630
MS.gene23794.t1	MTR_3g467200	60.669	478	185	1	34	511	59	533	0.0	622
MS.gene23794.t1	MTR_7g087520	33.140	516	324	9	4	509	16	520	1.15e-94	297
MS.gene23794.t1	MTR_3g436540	31.515	495	314	11	24	511	39	515	2.41e-76	249

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23794.t1	AT4G39950	52.953	491	226	3	20	509	51	537	0.0	570
MS.gene23794.t1	AT4G39950	52.953	491	226	3	20	509	91	577	0.0	569
MS.gene23794.t1	AT5G05260	52.965	489	225	4	25	509	40	527	0.0	562
MS.gene23794.t1	AT2G22330	50.984	508	243	4	3	509	60	562	0.0	556
MS.gene23794.t1	AT2G22330	50.984	508	243	4	3	509	37	539	0.0	555
MS.gene23794.t1	AT5G05260	49.898	489	208	5	25	509	40	495	7.59e-178	509
MS.gene23794.t1	AT5G35917	48.269	491	204	6	25	509	42	488	8.25e-169	486
MS.gene23794.t1	AT1G58260	44.767	516	275	4	1	509	13	525	5.74e-158	460
MS.gene23794.t1	AT1G79370	45.040	504	259	4	22	509	37	538	4.41e-150	441
MS.gene23794.t1	AT1G16410	42.000	500	280	5	17	509	37	533	2.31e-139	413

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Find 127 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAACATGGCTACCTTT+TGG	0.269442	8.4:-30674659	None:intergenic
AAATGTAACCAAGTCCAAAC+TGG	0.354635	8.4:-30674789	None:intergenic
AACAAATGCACCAAAATTGG+TGG	0.547883	8.4:+30673780	MS.gene23794:CDS
AAGCCATTTATGTCTAAGAG+GGG	0.673154	8.4:-30673709	None:intergenic
AAGGTAGCCATGTTTATTTA+AGG	0.289393	8.4:+30674663	MS.gene23794:CDS
AAGTCAAGACCCCTCAAACA+TGG	0.602449	8.4:-30673996	None:intergenic
AATAAAAGGTACTTTGGTAA+TGG	0.434550	8.4:+30673873	MS.gene23794:CDS
AATGTAACCAAGTCCAAACT+GGG	0.613571	8.4:-30674788	None:intergenic
ACAGCGTAGTTGGAAAAGGA+AGG	0.636714	8.4:+30674498	MS.gene23794:CDS
ACATTTGGTACCGGAAGGCG+TGG	0.589095	8.4:+30674806	MS.gene23794:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAGCCATGTTTATTTA+AGG	+	chr8.4:30674663-30674682	MS.gene23794:CDS	30.0%
AGAATTCAACAATGGAAGAA+TGG	+	chr8.4:30674092-30674111	MS.gene23794:CDS	30.0%
AGATTAGAACCAAAGGTTTA+TGG	+	chr8.4:30674992-30675011	MS.gene23794:CDS	30.0%
CATGTTTATTTAAGGAGACA+AGG	+	chr8.4:30674671-30674690	MS.gene23794:CDS	30.0%
CTTAGAGGAAATAGAATATG+TGG	+	chr8.4:30673917-30673936	MS.gene23794:CDS	30.0%
CTTGTCTCCTTAAATAAACA+TGG	-	chr8.4:30674673-30674692	None:intergenic	30.0%
GAATTCAACAATGGAAGAAT+GGG	+	chr8.4:30674093-30674112	MS.gene23794:CDS	30.0%
GAATTCTATCCTCAATGATA+GGG	-	chr8.4:30674079-30674098	None:intergenic	30.0%
GACATAACGTACAATGTTAT+CGG	-	chr8.4:30673757-30673776	None:intergenic	30.0%
GCTAATTACTTTATCCCAAA+AGG	+	chr8.4:30674644-30674663	MS.gene23794:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	30673312	30675024	30673312	ID=MS.gene23794
chr8.4	mRNA	30673312	30675024	30673312	ID=MS.gene23794.t1;Parent=MS.gene23794
chr8.4	exon	30673312	30674217	30673312	ID=MS.gene23794.t1.exon1;Parent=MS.gene23794.t1
chr8.4	CDS	30673312	30674217	30673312	ID=cds.MS.gene23794.t1;Parent=MS.gene23794.t1
chr8.4	exon	30674392	30675024	30674392	ID=MS.gene23794.t1.exon2;Parent=MS.gene23794.t1
chr8.4	CDS	30674392	30675024	30674392	ID=cds.MS.gene23794.t1;Parent=MS.gene23794.t1

Gene Sequence

>MS.gene23794

ATGTTACTTGTCTATAAACTCCTCATCAAACACCAACGTAGTACCCAAAAATCTGAAAAACCAAAACCAAAACTCCCTCCTGGTCCAACACCTTGGCCAATAGTGGGTAACCTCCCTGAAATGCTTGCAAATAGGCCAACATTTAGATGGATACAAAAAATGATGAATGATCTCAACACAGAAATTGCGTGCATCCGTTTAGGTAATGTTCATGTGATTACAATTAGCAATCCTGAAATTGCACGTGAATTATGTATAAAACAAGATGCAATTTTTGCATCAAGACCAAGTAGTTGGTCAAATGAGTATGTTACTAATGGTTATCTAACCACAGCACTCACTCCCTTTGGAGAACAATGGAAGAAAGTGAAGAAAGTTATTAGCAATGAGCTTGTTTCCCCTCTTAGACATAAATGGCTTCATGATAAGAGAGTGGAAGAAGCCGATAACATTGTACGTTATGTCTATAACAAATGCACCAAAATTGGTGGTGATGGAACTGTGAATGTGAGTGTTGCTGCTCAATATTATTCAGGGAATGTTATTAGGAGGTTGCTTTTGAATAAAAGGTACTTTGGTAATGGTAGTGAAGATTATGGACCTGGCTTAGAGGAAATAGAATATGTGGAAGCAATTTTCACTGTTTTGCAATACCTCTTTGCTTTCTCAGTTTCTGATTTCATGCCATGTTTGAGGGGTCTTGACTTGGATGGTCATGAAAGGATCATTAAGAAGGCTTGCAAGATCATGAAGAAATATCATGACCCTATCATTGAGGATAGAATTCAACAATGGAAGAATGGGAAAAAGATAGAAAAAGAAGACTTGCTTGATGTTCTCATCTCACTCAAAGATGGTGAAAACAATGCCATTTTGACTGAGCAGGAAATCAAGTCCAATATTTTGGTATATATATCTTAAACTCTTCTTTTCATCTCCTTTTAGCTAGCTGATCATTTATTATATATTTTCTAATATGCAACAAACAATCCCTTATTTCTAATGGACTAAATAAATTATTAAAAATTTAATATTGTATTATTGTCTTGAAAACGATATTAATGGGGATATATTTCACAGGAATTGACACTTGCAGCCGTTGATAATCCATCGAATGCAGTTGAATGGGGACTTGCTGAATTGATCAATCAACCCGAGCTACTTAAAAAAGCAACTGAAGAATTAGACAGCGTAGTTGGAAAAGGAAGGCTAGTGCAAGAATACGATTTTCCCAGACTAAACTATGTGAAGGCATGTGCAAAAGAAGCTTTTCGTCGTCACCCAATTTGCGATTTCAACCTTCCCCATGTTGCAATGAAAGACACAACTCTTGCTAATTACTTTATCCCAAAAGGTAGCCATGTTTATTTAAGGAGACAAGGACTTGGCATAAACCCTAGAGTTTGGAAAGAACCACTTAAGTTCAATCCAGAACGACATCTTAAGATCGATGGATCTAATTTGAGTTTGGCAGATCCCAGTTTGGACTTGGTTACATTTGGTACCGGAAGGCGTGGATGTTCAGGGGTCATGCTTGGAACTTCAATGACTATTATGTTATTTGCAAGGTTGATCCATGGTTTCACGTGGAGTTTGCCACCAAACCAGTCTAGTATTGACCTCTCTGAATCTCATGGAGGAACCACAAAAGCTAAGCCACTTGTGGCAGTGGCAGAGCCAAGATTAGAACCAAAGGTTTATGGTTTATATTAA

Protein sequence

>MS.gene23794.t1

MLLVYKLLIKHQRSTQKSEKPKPKLPPGPTPWPIVGNLPEMLANRPTFRWIQKMMNDLNTEIACIRLGNVHVITISNPEIARELCIKQDAIFASRPSSWSNEYVTNGYLTTALTPFGEQWKKVKKVISNELVSPLRHKWLHDKRVEEADNIVRYVYNKCTKIGGDGTVNVSVAAQYYSGNVIRRLLLNKRYFGNGSEDYGPGLEEIEYVEAIFTVLQYLFAFSVSDFMPCLRGLDLDGHERIIKKACKIMKKYHDPIIEDRIQQWKNGKKIEKEDLLDVLISLKDGENNAILTEQEIKSNILELTLAAVDNPSNAVEWGLAELINQPELLKKATEELDSVVGKGRLVQEYDFPRLNYVKACAKEAFRRHPICDFNLPHVAMKDTTLANYFIPKGSHVYLRRQGLGINPRVWKEPLKFNPERHLKIDGSNLSLADPSLDLVTFGTGRRGCSGVMLGTSMTIMLFARLIHGFTWSLPPNQSSIDLSESHGGTTKAKPLVAVAEPRLEPKVYGLY