Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027507.t1 | XP_003613413.2 | 82.6 | 1053 | 181 | 2 | 69 | 1120 | 1 | 1052 | 0.00E+00 | 1650.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027507.t1 | Q9LFS8 | 56.4 | 1047 | 456 | 0 | 73 | 1119 | 4 | 1050 | 0.0e+00 | 1104.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027507.t1 | G7K5K8 | 82.6 | 1053 | 181 | 2 | 69 | 1120 | 1 | 1052 | 0.0e+00 | 1650.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043593 | MS.gene027507 | PPI |
| MS.gene064353 | MS.gene027507 | PPI |
| MS.gene035825 | MS.gene027507 | PPI |
| MS.gene73093 | MS.gene027507 | PPI |
| MS.gene043643 | MS.gene027507 | PPI |
| MS.gene035826 | MS.gene027507 | PPI |
| MS.gene064351 | MS.gene027507 | PPI |
| MS.gene035828 | MS.gene027507 | PPI |
| MS.gene99872 | MS.gene027507 | PPI |
| MS.gene043595 | MS.gene027507 | PPI |
| MS.gene043645 | MS.gene027507 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027507.t1 | MTR_5g036370 | 92.118 | 1053 | 81 | 2 | 69 | 1120 | 1 | 1052 | 0.0 | 1983 |
| MS.gene027507.t1 | MTR_3g033470 | 81.559 | 1052 | 194 | 0 | 69 | 1120 | 1 | 1052 | 0.0 | 1724 |
| MS.gene027507.t1 | MTR_4g115050 | 81.844 | 1041 | 189 | 0 | 80 | 1120 | 1 | 1041 | 0.0 | 1716 |
| MS.gene027507.t1 | MTR_5g036330 | 95.021 | 241 | 12 | 0 | 880 | 1120 | 1 | 241 | 1.61e-165 | 488 |
| MS.gene027507.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 980 | 1100 | 2 | 114 | 6.86e-50 | 172 |
| MS.gene027507.t1 | MTR_4g036760 | 21.590 | 1107 | 654 | 45 | 89 | 1072 | 22 | 1037 | 8.92e-23 | 105 |
| MS.gene027507.t1 | MTR_4g061050 | 22.704 | 392 | 240 | 12 | 89 | 430 | 21 | 399 | 6.69e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027507.t1 | AT5G15920 | 59.599 | 1047 | 423 | 0 | 73 | 1119 | 4 | 1050 | 0.0 | 1233 |
| MS.gene027507.t1 | AT3G47460 | 24.834 | 451 | 262 | 21 | 91 | 492 | 2 | 424 | 5.97e-12 | 70.9 |
| MS.gene027507.t1 | AT3G47460 | 24.834 | 451 | 262 | 21 | 91 | 492 | 2 | 424 | 6.61e-12 | 70.9 |
| MS.gene027507.t1 | AT5G07660 | 21.723 | 534 | 341 | 16 | 90 | 569 | 21 | 531 | 1.72e-11 | 69.3 |
Find 220 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGGGAATTTCTAGTTTA+TGG | 0.067075 | 5.4:-25828441 | MS.gene027507:CDS |
| AACATCTTCCTTTCATTTAT+TGG | 0.110482 | 5.4:+25820646 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.179796 | 5.4:+25820767 | None:intergenic |
| AGGAAATATTGTGTCTAAAA+AGG | 0.202638 | 5.4:-25833531 | MS.gene027507:CDS |
| GAATTCAACAAGGAGGTTTA+TGG | 0.219115 | 5.4:-25829850 | MS.gene027507:CDS |
| CCTTAACTTTAATTGCATTA+TGG | 0.223056 | 5.4:+25827628 | None:intergenic |
| TTACTTGCATTGCAAAATTC+AGG | 0.252497 | 5.4:-25829922 | MS.gene027507:CDS |
| TTGTATATTATCAGAGAAAA+TGG | 0.257427 | 5.4:-25820971 | MS.gene027507:intron |
| CTCCTTAGCTTCACGATATT+CGG | 0.257714 | 5.4:+25831853 | None:intergenic |
| ACATCTTCCTTTCATTTATT+GGG | 0.259944 | 5.4:+25820647 | None:intergenic |
| ATGTATACCTCGACTAAAAC+TGG | 0.260752 | 5.4:+25829826 | None:intergenic |
| CCGCGTTTGAATCTTGTAAT+TGG | 0.267743 | 5.4:-25834001 | MS.gene027507:CDS |
| GTTAACTCCCGTGCAACTTC+TGG | 0.268408 | 5.4:-25832451 | MS.gene027507:CDS |
| AGTACTCACTGTGGTGTATT+TGG | 0.268532 | 5.4:+25820595 | None:intergenic |
| GAGCAGGATGATTTAGATAC+TGG | 0.281971 | 5.4:-25827699 | MS.gene027507:CDS |
| AAACTAGAAATTCCCAAGTT+TGG | 0.284443 | 5.4:+25828445 | None:intergenic |
| TAATAGTTTGTTAGCCTTCT+CGG | 0.309752 | 5.4:+25831805 | None:intergenic |
| GTAATTGGACCCAATGGTTC+TGG | 0.314801 | 5.4:-25833986 | MS.gene027507:CDS |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 5.4:+25833477 | None:intergenic |
| CCTGTCTTTGCAATTCTTCA+AGG | 0.332234 | 5.4:+25830065 | None:intergenic |
| CTCTTTATGCTCCCCTCTTA+AGG | 0.334118 | 5.4:+25833751 | None:intergenic |
| TTCTCCCCGCTTCACAAATT+CGG | 0.337201 | 5.4:+25833796 | None:intergenic |
| GATATGGACTATGATCAATT+TGG | 0.340290 | 5.4:-25821811 | MS.gene027507:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.346157 | 5.4:-25833953 | MS.gene027507:CDS |
| CACCAGAAAATCACTATTAC+TGG | 0.367078 | 5.4:-25828417 | MS.gene027507:CDS |
| ATAAACGAGAAGCAATAATT+AGG | 0.367459 | 5.4:-25827861 | MS.gene027507:CDS |
| AGCCGTTGAGGTTCCAAACT+TGG | 0.377273 | 5.4:-25828458 | MS.gene027507:CDS |
| TTGCCGGTAACTGAGGTAAA+TGG | 0.378152 | 5.4:+25834977 | None:intergenic |
| TACAAAGTGTCGTGCTGAAT+TGG | 0.382540 | 5.4:-25822913 | MS.gene027507:CDS |
| CACATTAAGATTACCTTAAG+AGG | 0.382832 | 5.4:-25833764 | MS.gene027507:CDS |
| TTCCTCAGATGAGCATGATA+TGG | 0.383274 | 5.4:-25821827 | MS.gene027507:intron |
| TACTTATAAAAGTCAAATTC+AGG | 0.384789 | 5.4:-25821786 | MS.gene027507:intron |
| TCTAGCTCTATAATGTTTCC+AGG | 0.386752 | 5.4:+25834070 | None:intergenic |
| CCATAATGCAATTAAAGTTA+AGG | 0.386870 | 5.4:-25827628 | MS.gene027507:intron |
| TGCTGAATTGGAAACCATTA+AGG | 0.388459 | 5.4:-25822901 | MS.gene027507:intron |
| GTTAGCAAAGCTTGCTGATC+AGG | 0.389194 | 5.4:-25827676 | MS.gene027507:CDS |
| TTTCAGAAGGCTCTCTTTGT+TGG | 0.391226 | 5.4:+25828847 | None:intergenic |
| TTCAAGAACAAATTGCTTCC+CGG | 0.391298 | 5.4:-25828170 | MS.gene027507:CDS |
| TCACCATTTACCTCAGTTAC+CGG | 0.392804 | 5.4:-25834980 | MS.gene027507:CDS |
| ATACTATTCACTAGAAGTTT+CGG | 0.395851 | 5.4:+25828340 | None:intergenic |
| TTTCAACAGATGGCTGTTGC+CGG | 0.399444 | 5.4:-25821937 | MS.gene027507:CDS |
| TACTGGTCGAAGTCTAGATA+TGG | 0.407251 | 5.4:-25828400 | MS.gene027507:CDS |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 5.4:+25820409 | None:intergenic |
| CCGAATGATCAAGTTTAGAT+TGG | 0.407807 | 5.4:+25828658 | None:intergenic |
| CCAATCTAAACTTGATCATT+CGG | 0.408806 | 5.4:-25828658 | MS.gene027507:intron |
| CGACCAGTATAATTTAAAAC+TGG | 0.411645 | 5.4:+25828876 | None:intergenic |
| TGCAGATCTGGTAACAGCTT+TGG | 0.415021 | 5.4:+25820421 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 5.4:-25829684 | MS.gene027507:CDS |
| GAGAGAGAAAGTTGTGGAGT+TGG | 0.417892 | 5.4:-25830157 | MS.gene027507:CDS |
| TATGAGAAATTACCCTTTGA+GGG | 0.418707 | 5.4:+25820343 | None:intergenic |
| AAATTTGGTCCAAACGGAAA+TGG | 0.420361 | 5.4:+25828718 | None:intergenic |
| TCATCCGTGGGAGGTACATA+AGG | 0.425803 | 5.4:+25830968 | None:intergenic |
| GGAAATTTCTGCTAATGAAG+TGG | 0.426030 | 5.4:-25830136 | MS.gene027507:CDS |
| TTGTAAAATTTGCAGGTTGA+AGG | 0.428383 | 5.4:-25829971 | MS.gene027507:intron |
| CTCAGTGCCCATCATCAATC+TGG | 0.429551 | 5.4:-25820935 | MS.gene027507:CDS |
| TATTTAGCATGAGACTGATC+TGG | 0.433236 | 5.4:+25829715 | None:intergenic |
| TTACCTTTGCAGCAAATTCA+AGG | 0.435181 | 5.4:+25827247 | None:intergenic |
| AACACCTCCTTGACAGCATC+AGG | 0.438128 | 5.4:+25828687 | None:intergenic |
| TGTAAATCAGCCTGGGCTGC+TGG | 0.439781 | 5.4:-25820256 | MS.gene027507:intron |
| GGACGAGGTTCCGCCATTGC+CGG | 0.441970 | 5.4:+25834961 | None:intergenic |
| TCACATATTGCAACAATATG+AGG | 0.445148 | 5.4:-25823063 | MS.gene027507:CDS |
| GAAGCAATAATTAGGCGTAT+TGG | 0.445971 | 5.4:-25827853 | MS.gene027507:intron |
| GTATGAGAAATTACCCTTTG+AGG | 0.445975 | 5.4:+25820342 | None:intergenic |
| TGGCTTATGCGGCGAGCCCC+AGG | 0.449171 | 5.4:-25833933 | MS.gene027507:intron |
| CAATAAGAAAAGCAGACTAT+TGG | 0.452805 | 5.4:-25831230 | MS.gene027507:CDS |
| TTCTGTAGGTCAGGTGTAAG+AGG | 0.453874 | 5.4:+25824379 | None:intergenic |
| CTTGTTGAAGATGCGTGTTA+CGG | 0.456156 | 5.4:-25827300 | MS.gene027507:CDS |
| GATGGACGAGTTGCGACAGC+AGG | 0.457394 | 5.4:-25831068 | MS.gene027507:CDS |
| GTGAAGCGGGGAGAAGAGTC+TGG | 0.460974 | 5.4:-25833788 | MS.gene027507:CDS |
| GCCACAAGATTTCTGAGAGT+TGG | 0.461741 | 5.4:+25821988 | None:intergenic |
| TGATGCTCCTGATGCTGTCA+AGG | 0.462891 | 5.4:-25828694 | MS.gene027507:CDS |
| CGGACGAAGTTATGTTGTAC+AGG | 0.464754 | 5.4:-25827280 | MS.gene027507:CDS |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 5.4:-25823141 | MS.gene027507:CDS |
| TTCAATTCAGTTTATTGGAT+CGG | 0.472681 | 5.4:-25828497 | MS.gene027507:intron |
| TATTGGCATTCTCATTTAGT+CGG | 0.474146 | 5.4:+25831248 | None:intergenic |
| GGAGAGGATGATTATATGCC+TGG | 0.475819 | 5.4:-25834088 | MS.gene027507:CDS |
| TCTTGGTATCCATTTCCGTT+TGG | 0.476435 | 5.4:-25828727 | MS.gene027507:CDS |
| TGTTGCCGAATTTGTGAAGC+GGG | 0.477292 | 5.4:-25833801 | MS.gene027507:CDS |
| TACTTGCATTGCAAAATTCA+GGG | 0.477903 | 5.4:-25829921 | MS.gene027507:CDS |
| AGAAATTCCTTCTGTAGGTC+AGG | 0.478076 | 5.4:+25824370 | None:intergenic |
| GAAAGTGATACTGAAATCAA+TGG | 0.478911 | 5.4:-25827724 | MS.gene027507:CDS |
| AGAACTCTTTCCAGAACCAT+TGG | 0.478943 | 5.4:+25833976 | None:intergenic |
| TTGGATGTTAAACTTCTGAA+TGG | 0.479019 | 5.4:+25833496 | None:intergenic |
| GATTACCTAAAATGTAAACC+TGG | 0.479900 | 5.4:-25834025 | MS.gene027507:CDS |
| TGAACTTTGTTTCAGGGGAG+AGG | 0.480134 | 5.4:-25834104 | MS.gene027507:intron |
| ACTGAAATCAATGGAAGAGC+AGG | 0.484741 | 5.4:-25827715 | MS.gene027507:CDS |
| AAGATGAGGAGAAAAGCTTA+AGG | 0.485886 | 5.4:-25828125 | MS.gene027507:CDS |
| TCAAGAACAAATTGCTTCCC+GGG | 0.489449 | 5.4:-25828169 | MS.gene027507:CDS |
| TTTGAGGGCTGCTCAATCCA+AGG | 0.490898 | 5.4:+25820358 | None:intergenic |
| GCCGTTGAGGTTCCAAACTT+GGG | 0.494349 | 5.4:-25828457 | MS.gene027507:CDS |
| CCTTGAAGAATTGCAAAGAC+AGG | 0.494479 | 5.4:-25830065 | MS.gene027507:intron |
| TAATCTGAGCTTCAAAGAAA+AGG | 0.494952 | 5.4:-25828196 | MS.gene027507:CDS |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 5.4:+25820768 | None:intergenic |
| TGCGACAGCAGGAAGAAAAT+CGG | 0.495961 | 5.4:-25831057 | MS.gene027507:CDS |
| ACAAGATTCAAACGCGGCCC+AGG | 0.496865 | 5.4:+25834007 | None:intergenic |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 5.4:-25829693 | MS.gene027507:CDS |
| ATGACGGTGGTGATCTGAAC+AGG | 0.501078 | 5.4:-25835909 | MS.gene027507:CDS |
| TTTCCTTGAATTTGCTGCAA+AGG | 0.501461 | 5.4:-25827250 | MS.gene027507:intron |
| TACTAAAGATTTAAATGTGA+GGG | 0.503403 | 5.4:-25828226 | MS.gene027507:intron |
| AAGTTCTTCTGCAGGAAAAG+TGG | 0.503487 | 5.4:-25822014 | MS.gene027507:intron |
| TCTTACCAGATGCGAGCTCT+TGG | 0.503536 | 5.4:-25828744 | MS.gene027507:intron |
| GGCAGTTTGTAAGATCTTGA+AGG | 0.506438 | 5.4:+25820789 | None:intergenic |
| CCTGGGCTGCTGGTGATCGA+TGG | 0.509140 | 5.4:-25820246 | MS.gene027507:CDS |
| TGGATTGAGCAGCCCTCAAA+GGG | 0.510730 | 5.4:-25820355 | MS.gene027507:intron |
| CCATCGATCACCAGCAGCCC+AGG | 0.511705 | 5.4:+25820246 | None:intergenic |
| GAAATTTCTGCTAATGAAGT+GGG | 0.513283 | 5.4:-25830135 | MS.gene027507:CDS |
| CCCGGGAGGAAAGTATCAAA+AGG | 0.514236 | 5.4:-25828152 | MS.gene027507:CDS |
| AAGTTATGTTGTACAGGGAA+TGG | 0.514733 | 5.4:-25827274 | MS.gene027507:CDS |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 5.4:+25823140 | None:intergenic |
| GGTCTCTTCCAGAAGTTGCA+CGG | 0.517180 | 5.4:+25832443 | None:intergenic |
| ATTAGTACACGATGTTGCTC+AGG | 0.517348 | 5.4:+25832393 | None:intergenic |
| CATACCTAGTGAAACTTCTC+CGG | 0.519720 | 5.4:+25821918 | None:intergenic |
| AGGAACATTAAATCAGTTGA+AGG | 0.520533 | 5.4:-25832230 | MS.gene027507:CDS |
| TGAATTCATGACGATGCGCT+TGG | 0.524274 | 5.4:+25829866 | None:intergenic |
| CATCCGTGGGAGGTACATAA+GGG | 0.526641 | 5.4:+25830969 | None:intergenic |
| CCAAGCGCCCTAAAATTACC+AGG | 0.527278 | 5.4:-25834936 | MS.gene027507:intron |
| GTACCCCTCCAGATTGATGA+TGG | 0.527426 | 5.4:+25820927 | None:intergenic |
| AATCTTGTAATTGGACCCAA+TGG | 0.527767 | 5.4:-25833992 | MS.gene027507:CDS |
| GAACTCTTTCCAGAACCATT+GGG | 0.528548 | 5.4:+25833977 | None:intergenic |
| CACAAATTCGGCAACACTCG+TGG | 0.530593 | 5.4:+25833808 | None:intergenic |
| TTTACCTCAGTTACCGGCAA+TGG | 0.531963 | 5.4:-25834974 | MS.gene027507:CDS |
| GTCTCTTCCAGAAGTTGCAC+GGG | 0.533502 | 5.4:+25832444 | None:intergenic |
| AAAACTTGACACGGACAAGA+AGG | 0.536122 | 5.4:-25822940 | MS.gene027507:CDS |
| TTAGGGCGCTTGGGTGGACG+AGG | 0.537742 | 5.4:+25834946 | None:intergenic |
| AGCAGGATGATTTAGATACT+GGG | 0.542003 | 5.4:-25827698 | MS.gene027507:CDS |
| ATTTAGCATGAGACTGATCT+GGG | 0.545071 | 5.4:+25829716 | None:intergenic |
| TGGTGATCTGAACAGGACTC+TGG | 0.546389 | 5.4:-25835902 | MS.gene027507:CDS |
| GTATCAGCAACAAGTCTGAA+TGG | 0.546894 | 5.4:-25833700 | MS.gene027507:CDS |
| TTGGATTGAGCAGCCCTCAA+AGG | 0.549843 | 5.4:-25820356 | MS.gene027507:CDS |
| GTTTACGAAGATTAGCAGCC+TGG | 0.552178 | 5.4:+25828100 | None:intergenic |
| TCTGTAGGTCAGGTGTAAGA+GGG | 0.552413 | 5.4:+25824380 | None:intergenic |
| TCCAACTCTCAGAAATCTTG+TGG | 0.553001 | 5.4:-25821989 | MS.gene027507:CDS |
| ATTGGAGAAAGAGAGCCAAT+TGG | 0.554157 | 5.4:-25831212 | MS.gene027507:intron |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 5.4:-25820375 | MS.gene027507:CDS |
| GTAGATGCCTACTACAATTG+AGG | 0.555634 | 5.4:-25823147 | MS.gene027507:intron |
| ATGTGGTTTCTCTCAATCAC+CGG | 0.555917 | 5.4:-25835988 | MS.gene027507:CDS |
| CGATGTTGCTCAGGAAGTTG+TGG | 0.556159 | 5.4:+25832402 | None:intergenic |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 5.4:-25820223 | MS.gene027507:CDS |
| ACATTAAGATTACCTTAAGA+GGG | 0.557216 | 5.4:-25833763 | MS.gene027507:CDS |
| TATCAAAAGGTTTCAAGATG+AGG | 0.558989 | 5.4:-25828139 | MS.gene027507:CDS |
| TTATAGGAAGTGGAATTACA+AGG | 0.560138 | 5.4:-25831103 | MS.gene027507:intron |
| GGCCGAATATCGTGAAGCTA+AGG | 0.561976 | 5.4:-25831855 | MS.gene027507:CDS |
| AAGACTGAGAGAGAAAGTTG+TGG | 0.562008 | 5.4:-25830163 | MS.gene027507:CDS |
| TCCCAAGTTTGGAACCTCAA+CGG | 0.562662 | 5.4:+25828456 | None:intergenic |
| TGATACTAGCGTATTTGTAA+AGG | 0.564370 | 5.4:+25835016 | None:intergenic |
| ACAAGGAAATTACAAAGAGA+TGG | 0.566474 | 5.4:-25831086 | MS.gene027507:CDS |
| GTTGAAGTATGATATGAAGC+AGG | 0.567566 | 5.4:-25831876 | MS.gene027507:CDS |
| CCTACAGAAGGAATTTCTTG+AGG | 0.569225 | 5.4:-25824365 | MS.gene027507:intron |
| GCGTGAGAAGACTGCCGCAA+TGG | 0.572918 | 5.4:-25831831 | MS.gene027507:CDS |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 5.4:-25820232 | MS.gene027507:CDS |
| GAAAGGTCAGCATACTCGAT+AGG | 0.575946 | 5.4:+25831767 | None:intergenic |
| ACTTCTGGAAGAGACCGAAA+AGG | 0.576075 | 5.4:-25832436 | MS.gene027507:CDS |
| CTTAAGAGGGGAGCATAAAG+AGG | 0.576232 | 5.4:-25833750 | MS.gene027507:CDS |
| ACTTCAGGAGAAATTTCAGA+AGG | 0.576911 | 5.4:+25828834 | None:intergenic |
| GTTCGATGTGGTGGTGATGA+CGG | 0.577205 | 5.4:-25835925 | MS.gene027507:CDS |
| ACCTCAGTTACCGGCAATGG+CGG | 0.577367 | 5.4:-25834971 | MS.gene027507:CDS |
| AGCAGAAACTTAGAAAAGCT+AGG | 0.578280 | 5.4:-25831033 | MS.gene027507:CDS |
| TTGAGGGCTGCTCAATCCAA+GGG | 0.578825 | 5.4:+25820359 | None:intergenic |
| TTCATATCATACTTCAACCA+TGG | 0.579377 | 5.4:+25831881 | None:intergenic |
| CCTCAAGAAATTCCTTCTGT+AGG | 0.579781 | 5.4:+25824365 | None:intergenic |
| TGCTAATCTTCGTAAACAGA+AGG | 0.579946 | 5.4:-25828094 | MS.gene027507:intron |
| AACAGGACTCTGGCGACGAG+AGG | 0.582257 | 5.4:-25835892 | MS.gene027507:CDS |
| ATTACCTAAAATGTAAACCT+GGG | 0.582947 | 5.4:-25834024 | MS.gene027507:CDS |
| ATATGAGGATCGTCAAAGAC+AGG | 0.583532 | 5.4:-25823048 | MS.gene027507:intron |
| TACACTTACAATCTCATCCG+TGG | 0.584228 | 5.4:+25830955 | None:intergenic |
| GCAGTTTGTAAGATCTTGAA+GGG | 0.585493 | 5.4:+25820790 | None:intergenic |
| GGATGGACCCAATAAATGAA+AGG | 0.587763 | 5.4:-25820654 | MS.gene027507:CDS |
| AAACTTGACACGGACAAGAA+GGG | 0.590843 | 5.4:-25822939 | MS.gene027507:CDS |
| GTCTCATGCTAAATATCTAG+AGG | 0.591424 | 5.4:-25829707 | MS.gene027507:CDS |
| GCAGAAACTTAGAAAAGCTA+GGG | 0.593127 | 5.4:-25831032 | MS.gene027507:CDS |
| ACAGGACTCTGGCGACGAGA+GGG | 0.593849 | 5.4:-25835891 | MS.gene027507:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 5.4:-25829680 | MS.gene027507:intron |
| GGAGAAAAGCTTAAGGAACC+AGG | 0.597038 | 5.4:-25828118 | MS.gene027507:CDS |
| GAAGAGACCGAAAAGGCTGT+TGG | 0.597377 | 5.4:-25832429 | MS.gene027507:CDS |
| AACTGATCAGAAAGCCGTTG+AGG | 0.599760 | 5.4:-25828470 | MS.gene027507:CDS |
| CTCAATAGTTAACCTTGGCA+CGG | 0.602250 | 5.4:+25832152 | None:intergenic |
| CTCTTAAGGTAATCTTAATG+TGG | 0.602368 | 5.4:+25833765 | None:intergenic |
| CTGGCACATCATAATGTCGT+AGG | 0.602967 | 5.4:+25828895 | None:intergenic |
| ACTTGCATTGCAAAATTCAG+GGG | 0.605461 | 5.4:-25829920 | MS.gene027507:CDS |
| GCTATTGCTCTTGGCTTATG+CGG | 0.605682 | 5.4:-25833944 | MS.gene027507:CDS |
| TAATGGAAAAGAAATTGCCA+TGG | 0.607534 | 5.4:-25831898 | MS.gene027507:CDS |
| AGTGCCCATCATCAATCTGG+AGG | 0.608837 | 5.4:-25820932 | MS.gene027507:CDS |
| GTGCCCATCATCAATCTGGA+GGG | 0.610882 | 5.4:-25820931 | MS.gene027507:CDS |
| GGACGAAGTTATGTTGTACA+GGG | 0.613180 | 5.4:-25827279 | MS.gene027507:CDS |
| TCATATTGTTGCAATATGTG+AGG | 0.613373 | 5.4:+25823065 | None:intergenic |
| AACTCACAGACCCTGTCTTG+TGG | 0.614139 | 5.4:+25832480 | None:intergenic |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 5.4:-25820382 | MS.gene027507:CDS |
| AGATCTGATGTTCGATGTGG+TGG | 0.615961 | 5.4:-25835934 | MS.gene027507:CDS |
| AAGAGATGAACTCCGTGCCA+AGG | 0.616265 | 5.4:-25832164 | MS.gene027507:intron |
| ACGGTGACCACTGTGGTCGC+CGG | 0.616483 | 5.4:+25835969 | None:intergenic |
| TGGCGACGAGAGGGAGAAGT+CGG | 0.616597 | 5.4:-25835882 | MS.gene027507:CDS |
| ACATAATGCTGAATTAGAGA+AGG | 0.617880 | 5.4:-25832206 | MS.gene027507:CDS |
| TCCGCCATTGCCGGTAACTG+AGG | 0.619892 | 5.4:+25834970 | None:intergenic |
| AAACCCTTATGTACCTCCCA+CGG | 0.624268 | 5.4:-25830972 | MS.gene027507:CDS |
| GTACTAAAGATTTAAATGTG+AGG | 0.626016 | 5.4:-25828227 | MS.gene027507:intron |
| TGTATACCTCGACTAAAACT+GGG | 0.631176 | 5.4:+25829827 | None:intergenic |
| TGCCCATCATCAATCTGGAG+GGG | 0.633194 | 5.4:-25820930 | MS.gene027507:intron |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 5.4:-25820410 | MS.gene027507:CDS |
| TACCCCTCCAGATTGATGAT+GGG | 0.641014 | 5.4:+25820928 | None:intergenic |
| TGCCGCAATGGAATCCGAGA+AGG | 0.641450 | 5.4:-25831819 | MS.gene027507:CDS |
| TCTTACACCTGACCTACAGA+AGG | 0.643706 | 5.4:-25824377 | MS.gene027507:CDS |
| ACACTTACAATCTCATCCGT+GGG | 0.645301 | 5.4:+25830956 | None:intergenic |
| GTGTTGCCGAATTTGTGAAG+CGG | 0.645645 | 5.4:-25833802 | MS.gene027507:CDS |
| GTTGCCGGAGAAGTTTCACT+AGG | 0.647839 | 5.4:-25821922 | MS.gene027507:intron |
| TGCTCCTGATGCTGTCAAGG+AGG | 0.648261 | 5.4:-25828691 | MS.gene027507:CDS |
| GTTGTTGATGAGATCAACCA+AGG | 0.650633 | 5.4:-25820758 | MS.gene027507:intron |
| AGCCTTCTCGGATTCCATTG+CGG | 0.651970 | 5.4:+25831817 | None:intergenic |
| TCTCATGCTAAATATCTAGA+GGG | 0.663581 | 5.4:-25829706 | MS.gene027507:CDS |
| CTGTAGGTCAGGTGTAAGAG+GGG | 0.666378 | 5.4:+25824381 | None:intergenic |
| CATTAAGATTACCTTAAGAG+GGG | 0.675090 | 5.4:-25833762 | MS.gene027507:CDS |
| TCAATCACCGGCGACCACAG+TGG | 0.677688 | 5.4:-25835976 | MS.gene027507:CDS |
| GTTGCCGAATTTGTGAAGCG+GGG | 0.682114 | 5.4:-25833800 | MS.gene027507:CDS |
| AGAACAAATTGCTTCCCGGG+AGG | 0.691838 | 5.4:-25828166 | MS.gene027507:CDS |
| CCAATTACAAGATTCAAACG+CGG | 0.697229 | 5.4:+25834001 | None:intergenic |
| CTTACAATCTCATCCGTGGG+AGG | 0.700808 | 5.4:+25830959 | None:intergenic |
| CGATGTGGTGGTGATGACGG+TGG | 0.706699 | 5.4:-25835922 | MS.gene027507:CDS |
| TCGTCATGAATTCAACAAGG+AGG | 0.707524 | 5.4:-25829857 | MS.gene027507:CDS |
| GCATCGTCATGAATTCAACA+AGG | 0.720677 | 5.4:-25829860 | MS.gene027507:CDS |
| AACAGATCTGATGTTCGATG+TGG | 0.747218 | 5.4:-25835937 | MS.gene027507:CDS |
| GTTGAAGACGGTGACCACTG+TGG | 0.756205 | 5.4:+25835962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 25820207 | 25836010 | 25820207 | ID=MS.gene027507 |
| chr5.4 | mRNA | 25820207 | 25836010 | 25820207 | ID=MS.gene027507.t1;Parent=MS.gene027507 |
| chr5.4 | exon | 25835881 | 25836010 | 25835881 | ID=MS.gene027507.t1.exon1;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25835881 | 25836010 | 25835881 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25834937 | 25835051 | 25834937 | ID=MS.gene027507.t1.exon2;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25834937 | 25835051 | 25834937 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25833934 | 25834111 | 25833934 | ID=MS.gene027507.t1.exon3;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25833934 | 25834111 | 25833934 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25833690 | 25833843 | 25833690 | ID=MS.gene027507.t1.exon4;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25833690 | 25833843 | 25833690 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25833478 | 25833551 | 25833478 | ID=MS.gene027507.t1.exon5;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25833478 | 25833551 | 25833478 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25832359 | 25832508 | 25832359 | ID=MS.gene027507.t1.exon6;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25832359 | 25832508 | 25832359 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25832165 | 25832269 | 25832165 | ID=MS.gene027507.t1.exon7;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25832165 | 25832269 | 25832165 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25831782 | 25831927 | 25831782 | ID=MS.gene027507.t1.exon8;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25831782 | 25831927 | 25831782 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25831213 | 25831324 | 25831213 | ID=MS.gene027507.t1.exon9;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25831213 | 25831324 | 25831213 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25830964 | 25831119 | 25830964 | ID=MS.gene027507.t1.exon10;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25830964 | 25831119 | 25830964 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25830066 | 25830187 | 25830066 | ID=MS.gene027507.t1.exon11;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25830066 | 25830187 | 25830066 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25829834 | 25829978 | 25829834 | ID=MS.gene027507.t1.exon12;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25829834 | 25829978 | 25829834 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25829681 | 25829746 | 25829681 | ID=MS.gene027507.t1.exon13;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25829681 | 25829746 | 25829681 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25828836 | 25828964 | 25828836 | ID=MS.gene027507.t1.exon14;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25828836 | 25828964 | 25828836 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25828659 | 25828757 | 25828659 | ID=MS.gene027507.t1.exon15;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25828659 | 25828757 | 25828659 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25828344 | 25828509 | 25828344 | ID=MS.gene027507.t1.exon16;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25828344 | 25828509 | 25828344 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25828095 | 25828240 | 25828095 | ID=MS.gene027507.t1.exon17;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25828095 | 25828240 | 25828095 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25827854 | 25827917 | 25827854 | ID=MS.gene027507.t1.exon18;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25827854 | 25827917 | 25827854 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25827629 | 25827753 | 25827629 | ID=MS.gene027507.t1.exon19;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25827629 | 25827753 | 25827629 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25827251 | 25827328 | 25827251 | ID=MS.gene027507.t1.exon20;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25827251 | 25827328 | 25827251 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25824551 | 25824623 | 25824551 | ID=MS.gene027507.t1.exon21;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25824551 | 25824623 | 25824551 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25824366 | 25824469 | 25824366 | ID=MS.gene027507.t1.exon22;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25824366 | 25824469 | 25824366 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25823049 | 25823165 | 25823049 | ID=MS.gene027507.t1.exon23;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25823049 | 25823165 | 25823049 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25822902 | 25822979 | 25822902 | ID=MS.gene027507.t1.exon24;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25822902 | 25822979 | 25822902 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25821923 | 25822022 | 25821923 | ID=MS.gene027507.t1.exon25;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25821923 | 25822022 | 25821923 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25821787 | 25821841 | 25821787 | ID=MS.gene027507.t1.exon26;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25821787 | 25821841 | 25821787 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25820931 | 25820979 | 25820931 | ID=MS.gene027507.t1.exon27;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25820931 | 25820979 | 25820931 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25820759 | 25820846 | 25820759 | ID=MS.gene027507.t1.exon28;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25820759 | 25820846 | 25820759 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25820604 | 25820676 | 25820604 | ID=MS.gene027507.t1.exon29;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25820604 | 25820676 | 25820604 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25820356 | 25820459 | 25820356 | ID=MS.gene027507.t1.exon30;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25820356 | 25820459 | 25820356 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| chr5.4 | exon | 25820207 | 25820268 | 25820207 | ID=MS.gene027507.t1.exon31;Parent=MS.gene027507.t1 |
| chr5.4 | CDS | 25820207 | 25820268 | 25820207 | ID=cds.MS.gene027507.t1;Parent=MS.gene027507.t1 |
| Gene Sequence |
| Protein sequence |
