Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028109.t1 | RHN54641.1 | 97.7 | 702 | 16 | 0 | 1 | 702 | 1 | 702 | 0.00E+00 | 1281.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028109.t1 | Q9FT73 | 74.0 | 665 | 163 | 2 | 43 | 701 | 43 | 703 | 2.2e-285 | 982.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028109.t1 | A0A396HQ63 | 97.7 | 702 | 16 | 0 | 1 | 702 | 1 | 702 | 0.0e+00 | 1281.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032228 | MS.gene028109 | PPI |
| MS.gene028109 | MS.gene37366 | PPI |
| MS.gene028109 | MS.gene85610 | PPI |
| MS.gene87672 | MS.gene028109 | PPI |
| MS.gene028109 | MS.gene85235 | PPI |
| MS.gene036929 | MS.gene028109 | PPI |
| MS.gene028109 | MS.gene07826 | PPI |
| MS.gene028109 | MS.gene025141 | PPI |
| MS.gene028109 | MS.gene056998 | PPI |
| MS.gene028109 | MS.gene27517 | PPI |
| MS.gene051963 | MS.gene028109 | PPI |
| MS.gene011242 | MS.gene028109 | PPI |
| MS.gene028109 | MS.gene92776 | PPI |
| MS.gene028109 | MS.gene052695 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028109.t1 | MTR_5g026590 | 93.314 | 703 | 28 | 2 | 1 | 702 | 1 | 685 | 0.0 | 1343 |
| MS.gene028109.t1 | MTR_2g006440 | 37.246 | 690 | 359 | 16 | 71 | 690 | 390 | 1075 | 4.63e-133 | 421 |
| MS.gene028109.t1 | MTR_1g083840 | 41.149 | 435 | 232 | 9 | 61 | 475 | 168 | 598 | 1.54e-106 | 337 |
| MS.gene028109.t1 | MTR_2g042440 | 40.268 | 447 | 211 | 8 | 85 | 503 | 38 | 456 | 1.12e-104 | 335 |
| MS.gene028109.t1 | MTR_2g042440 | 40.268 | 447 | 211 | 8 | 85 | 503 | 38 | 456 | 1.16e-104 | 335 |
| MS.gene028109.t1 | MTR_3g063040 | 41.822 | 428 | 220 | 12 | 83 | 498 | 10 | 420 | 1.70e-93 | 310 |
| MS.gene028109.t1 | MTR_8g080160 | 36.982 | 338 | 197 | 7 | 84 | 417 | 271 | 596 | 2.77e-51 | 192 |
| MS.gene028109.t1 | MTR_1g083250 | 39.583 | 240 | 125 | 6 | 61 | 289 | 136 | 366 | 5.69e-43 | 165 |
| MS.gene028109.t1 | MTR_1g083250 | 41.346 | 104 | 61 | 0 | 317 | 420 | 510 | 613 | 2.73e-20 | 95.9 |
| MS.gene028109.t1 | MTR_1g083250 | 39.583 | 240 | 125 | 6 | 61 | 289 | 136 | 366 | 2.20e-42 | 165 |
| MS.gene028109.t1 | MTR_1g083250 | 36.364 | 165 | 97 | 4 | 317 | 475 | 510 | 672 | 3.46e-25 | 112 |
| MS.gene028109.t1 | MTR_1g083250 | 39.583 | 240 | 125 | 6 | 61 | 289 | 136 | 366 | 4.06e-42 | 164 |
| MS.gene028109.t1 | MTR_1g083250 | 36.364 | 165 | 97 | 4 | 317 | 475 | 510 | 672 | 3.92e-25 | 112 |
| MS.gene028109.t1 | MTR_1g026830 | 21.495 | 428 | 264 | 14 | 86 | 479 | 165 | 554 | 3.50e-13 | 73.2 |
| MS.gene028109.t1 | MTR_2g100230 | 23.894 | 339 | 211 | 10 | 102 | 417 | 130 | 444 | 6.69e-13 | 72.0 |
| MS.gene028109.t1 | MTR_4g105100 | 23.512 | 336 | 216 | 12 | 102 | 417 | 236 | 550 | 6.93e-12 | 69.3 |
| MS.gene028109.t1 | MTR_1g095810 | 21.875 | 352 | 222 | 10 | 86 | 408 | 163 | 490 | 5.55e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028109.t1 | AT1G31360 | 72.843 | 707 | 182 | 2 | 1 | 701 | 1 | 703 | 0.0 | 1092 |
| MS.gene028109.t1 | AT1G31360 | 72.843 | 707 | 182 | 2 | 1 | 701 | 35 | 737 | 0.0 | 1091 |
| MS.gene028109.t1 | AT1G31360 | 75.428 | 643 | 154 | 1 | 1 | 643 | 1 | 639 | 0.0 | 1035 |
| MS.gene028109.t1 | AT1G31360 | 74.570 | 582 | 138 | 2 | 126 | 701 | 1 | 578 | 0.0 | 917 |
| MS.gene028109.t1 | AT1G31360 | 76.881 | 545 | 126 | 0 | 1 | 545 | 1 | 545 | 0.0 | 903 |
| MS.gene028109.t1 | AT1G31360 | 78.450 | 529 | 110 | 1 | 1 | 529 | 1 | 525 | 0.0 | 885 |
| MS.gene028109.t1 | AT1G31360 | 78.585 | 523 | 112 | 0 | 1 | 523 | 1 | 523 | 0.0 | 885 |
| MS.gene028109.t1 | AT1G31360 | 78.585 | 523 | 112 | 0 | 1 | 523 | 1 | 523 | 0.0 | 885 |
| MS.gene028109.t1 | AT1G10930 | 37.031 | 667 | 336 | 14 | 71 | 664 | 435 | 1090 | 1.48e-128 | 410 |
| MS.gene028109.t1 | AT4G35740 | 42.680 | 403 | 212 | 7 | 85 | 475 | 32 | 427 | 6.43e-105 | 336 |
| MS.gene028109.t1 | AT3G05740 | 42.607 | 399 | 212 | 6 | 78 | 463 | 107 | 501 | 1.64e-102 | 323 |
| MS.gene028109.t1 | AT3G05740 | 42.607 | 399 | 212 | 6 | 78 | 463 | 192 | 586 | 1.08e-101 | 324 |
| MS.gene028109.t1 | AT4G35740 | 40.634 | 347 | 187 | 7 | 147 | 481 | 1 | 340 | 1.25e-77 | 261 |
| MS.gene028109.t1 | AT1G27880 | 34.456 | 386 | 229 | 9 | 43 | 417 | 218 | 590 | 3.47e-52 | 195 |
| MS.gene028109.t1 | AT1G27880 | 34.456 | 386 | 229 | 9 | 43 | 417 | 218 | 590 | 6.81e-52 | 194 |
| MS.gene028109.t1 | AT5G27680 | 36.299 | 281 | 152 | 7 | 19 | 289 | 107 | 370 | 2.62e-43 | 168 |
| MS.gene028109.t1 | AT5G27680 | 30.688 | 189 | 91 | 6 | 317 | 497 | 501 | 657 | 6.21e-14 | 76.3 |
| MS.gene028109.t1 | AT5G27680 | 36.299 | 281 | 152 | 7 | 19 | 289 | 107 | 370 | 3.36e-43 | 168 |
| MS.gene028109.t1 | AT5G27680 | 38.095 | 189 | 104 | 5 | 317 | 497 | 501 | 684 | 1.26e-28 | 122 |
| MS.gene028109.t1 | AT5G27680 | 36.299 | 281 | 152 | 7 | 19 | 289 | 107 | 370 | 3.36e-43 | 168 |
| MS.gene028109.t1 | AT5G27680 | 38.095 | 189 | 104 | 5 | 317 | 497 | 501 | 684 | 1.26e-28 | 122 |
| MS.gene028109.t1 | AT5G27680 | 36.299 | 281 | 152 | 7 | 19 | 289 | 107 | 370 | 3.36e-43 | 168 |
| MS.gene028109.t1 | AT5G27680 | 38.095 | 189 | 104 | 5 | 317 | 497 | 501 | 684 | 1.26e-28 | 122 |
| MS.gene028109.t1 | AT5G27680 | 36.299 | 281 | 152 | 7 | 19 | 289 | 107 | 370 | 3.36e-43 | 168 |
| MS.gene028109.t1 | AT5G27680 | 38.095 | 189 | 104 | 5 | 317 | 497 | 501 | 684 | 1.26e-28 | 122 |
| MS.gene028109.t1 | AT5G27680 | 40.088 | 227 | 118 | 5 | 73 | 289 | 22 | 240 | 6.00e-43 | 166 |
| MS.gene028109.t1 | AT5G27680 | 38.095 | 189 | 104 | 5 | 317 | 497 | 371 | 554 | 1.24e-28 | 122 |
| MS.gene028109.t1 | AT5G63120 | 22.414 | 348 | 205 | 10 | 102 | 417 | 200 | 514 | 1.76e-12 | 71.2 |
| MS.gene028109.t1 | AT1G55150 | 22.380 | 353 | 199 | 11 | 102 | 417 | 159 | 473 | 2.03e-11 | 67.4 |
| MS.gene028109.t1 | AT1G55150 | 22.380 | 353 | 199 | 11 | 102 | 417 | 134 | 448 | 2.10e-11 | 67.4 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGAACTAAATTCGATTT+TGG | 0.157671 | 5.3:-16498370 | MS.gene028109:CDS |
| TTCTTTGTTGCAAGATATTC+AGG | 0.234107 | 5.3:-16489965 | MS.gene028109:CDS |
| ACATCTCTACAAGATCATTT+TGG | 0.244904 | 5.3:+16495499 | None:intergenic |
| ACAATCCCTGATTCGTGATT+TGG | 0.255388 | 5.3:+16495210 | None:intergenic |
| TATACCATGTAAAATAAATT+TGG | 0.262283 | 5.3:+16495432 | None:intergenic |
| CTTGCCTCTTCCAGTGAGTT+TGG | 0.267298 | 5.3:+16486209 | None:intergenic |
| TTTACATTTCAGGTAGCTTT+TGG | 0.276488 | 5.3:-16493032 | MS.gene028109:intron |
| ACTTCGACGGCATTGTCTTT+TGG | 0.284094 | 5.3:+16490371 | None:intergenic |
| CCAAAGCACGCTCCAGTAAA+AGG | 0.284767 | 5.3:+16487694 | None:intergenic |
| GTGCAGTTGGAGAAAGTAAT+TGG | 0.285142 | 5.3:-16485756 | MS.gene028109:intron |
| GTGGGGTTGCTTCAGGTAAT+GGG | 0.286772 | 5.3:-16497010 | MS.gene028109:intron |
| ATTCTCAAGCTGATGATCTT+AGG | 0.305060 | 5.3:-16498263 | MS.gene028109:CDS |
| AATAAGAACAAGGTTCTTCT+TGG | 0.307971 | 5.3:+16485617 | None:intergenic |
| AAAGCAACCATAGGAACATT+AGG | 0.308648 | 5.3:+16495651 | None:intergenic |
| AAAACAAAACAGAAGGAAAT+AGG | 0.313249 | 5.3:-16489898 | MS.gene028109:intron |
| ATGGTCTTCTATGAAAATTC+AGG | 0.314044 | 5.3:-16491130 | MS.gene028109:CDS |
| CTCAGCAAAATGCCTGAAAA+AGG | 0.319842 | 5.3:+16490347 | None:intergenic |
| TCTTATCCAAATCACGAATC+AGG | 0.333951 | 5.3:-16495216 | MS.gene028109:CDS |
| CACATCTCTTCCACTCAATA+TGG | 0.350170 | 5.3:+16497245 | None:intergenic |
| CACCAGGTCTGAAGTATAAT+AGG | 0.356483 | 5.3:+16491621 | None:intergenic |
| AAACGCAGCCTCGGGTCATC+TGG | 0.375770 | 5.3:-16486344 | MS.gene028109:CDS |
| GTTCGAGTGTTGTGGAGAAT+TGG | 0.383508 | 5.3:-16498305 | MS.gene028109:CDS |
| TGCAGGGCATGCAAAATTGA+TGG | 0.387317 | 5.3:-16489989 | MS.gene028109:intron |
| TGACTTAAAACGAGAGGAAA+TGG | 0.395004 | 5.3:-16487733 | MS.gene028109:CDS |
| GTGTAAAGAATCTGAAAATC+AGG | 0.408828 | 5.3:-16498343 | MS.gene028109:CDS |
| GAAGTTCATATACAAAGCTT+TGG | 0.411764 | 5.3:-16496927 | MS.gene028109:CDS |
| CAGCCTCGGGTCATCTGGCT+TGG | 0.413431 | 5.3:-16486339 | MS.gene028109:CDS |
| ATTGGAACGGGACGTTTGAA+TGG | 0.415913 | 5.3:-16498287 | MS.gene028109:CDS |
| GGTAATGGGTTTGACTGCCT+TGG | 0.427589 | 5.3:-16496996 | MS.gene028109:CDS |
| ATACCAAGGTTCTTGTAATC+AGG | 0.433950 | 5.3:+16495690 | None:intergenic |
| CTCTAGGAAGGAATGTGAAC+AGG | 0.437358 | 5.3:-16495178 | MS.gene028109:intron |
| TGCAAAATTTGCTTCGCCAA+TGG | 0.440678 | 5.3:+16486723 | None:intergenic |
| GTAATGGGTTTGACTGCCTT+GGG | 0.449141 | 5.3:-16496995 | MS.gene028109:CDS |
| TCAGTTCCCTAATGTTCCTA+TGG | 0.451520 | 5.3:-16495658 | MS.gene028109:CDS |
| GCTTTCGCTAATTCAAGATC+AGG | 0.460053 | 5.3:-16497130 | MS.gene028109:intron |
| AAACTGAAGACGGAAAAGTA+TGG | 0.463144 | 5.3:-16485732 | MS.gene028109:CDS |
| AATTTGTCAGCACAGTCAAT+AGG | 0.468637 | 5.3:-16495455 | MS.gene028109:CDS |
| GTCATCATGGCTGCAGGTGG+TGG | 0.469281 | 5.3:-16497219 | MS.gene028109:CDS |
| AAGCAACCATAGGAACATTA+GGG | 0.471975 | 5.3:+16495652 | None:intergenic |
| CTTCCTGCTGTTCTTCGCAA+TGG | 0.476512 | 5.3:-16497177 | MS.gene028109:CDS |
| AAAGAACTTTCTTCCACTCA+TGG | 0.477688 | 5.3:-16486293 | MS.gene028109:CDS |
| GTACCATTGCACTCCTGTAA+TGG | 0.481444 | 5.3:+16490324 | None:intergenic |
| GCTAACTTCAACAACAAGTA+AGG | 0.482808 | 5.3:-16496957 | MS.gene028109:CDS |
| TTTAGGTTGCAAAGGAGCTA+AGG | 0.491708 | 5.3:-16493817 | MS.gene028109:intron |
| AGTGGTCGAGCTGGTCGAGA+TGG | 0.494642 | 5.3:-16491659 | MS.gene028109:CDS |
| TCACAGCTTGAGTAAATCAA+TGG | 0.495744 | 5.3:-16492097 | MS.gene028109:CDS |
| TTGGAACGGGACGTTTGAAT+GGG | 0.503155 | 5.3:-16498286 | MS.gene028109:CDS |
| AAAACCAAACTCACTGGAAG+AGG | 0.507726 | 5.3:-16486213 | MS.gene028109:intron |
| TGGTCATTATCATGCAGATA+TGG | 0.508007 | 5.3:-16493777 | MS.gene028109:CDS |
| TTACATTACTGTGGGGCCAT+TGG | 0.508759 | 5.3:-16486739 | MS.gene028109:CDS |
| GCTGAAATCGAAGATGTTCA+AGG | 0.509003 | 5.3:-16498542 | MS.gene028109:intron |
| CGACCTGATTACAAGAACCT+TGG | 0.510980 | 5.3:-16495693 | MS.gene028109:CDS |
| GGAAAAGTCATCCGTCAGTA+AGG | 0.511037 | 5.3:-16495274 | MS.gene028109:CDS |
| AACATTACTTTAGGTTGCAA+AGG | 0.512532 | 5.3:-16493825 | MS.gene028109:intron |
| TCAGACCTGGTGATGTCCCC+CGG | 0.513480 | 5.3:-16491610 | MS.gene028109:CDS |
| CAAAGCTTTGGAGAAGGGCG+AGG | 0.515095 | 5.3:-16496915 | MS.gene028109:CDS |
| TGACATAGTACGATATTGTC+AGG | 0.518563 | 5.3:-16491092 | MS.gene028109:intron |
| TAAGATTGAAACGCAGCCTC+GGG | 0.520222 | 5.3:-16486352 | MS.gene028109:CDS |
| TTGATTTACTCAAGCTGTGA+TGG | 0.520373 | 5.3:+16492100 | None:intergenic |
| ATGATGGTAGAGCTGCAAAA+AGG | 0.524588 | 5.3:-16485647 | MS.gene028109:CDS |
| TGCGAAGAACAGCAGGAAGC+TGG | 0.525627 | 5.3:+16497181 | None:intergenic |
| ACAAATGCTTACATTACTGT+GGG | 0.528063 | 5.3:-16486747 | MS.gene028109:CDS |
| TGTTTATTGCTTCTCTAGGA+AGG | 0.528457 | 5.3:-16495190 | MS.gene028109:CDS |
| CAACAGGAAAGTGGTCGAGC+TGG | 0.528486 | 5.3:-16491668 | MS.gene028109:intron |
| GGCACATTGCTGTAGTCAGT+GGG | 0.529118 | 5.3:-16495727 | MS.gene028109:CDS |
| ACTCCATTGCGAAGAACAGC+AGG | 0.530357 | 5.3:+16497174 | None:intergenic |
| GTAAGATTGAAACGCAGCCT+CGG | 0.535718 | 5.3:-16486353 | MS.gene028109:CDS |
| AAAGCTTTGGAGAAGGGCGA+GGG | 0.537834 | 5.3:-16496914 | MS.gene028109:CDS |
| TACAAATGCTTACATTACTG+TGG | 0.538641 | 5.3:-16486748 | MS.gene028109:CDS |
| AACAAGCTGCAGGTCATAGT+TGG | 0.538884 | 5.3:-16493150 | MS.gene028109:CDS |
| GTGTTGTGGAGAATTGGAAC+GGG | 0.540609 | 5.3:-16498299 | MS.gene028109:CDS |
| GTGGTCGAGCTGGTCGAGAT+GGG | 0.541598 | 5.3:-16491658 | MS.gene028109:CDS |
| GGATTGTTTATTGCTTCTCT+AGG | 0.542756 | 5.3:-16495194 | MS.gene028109:CDS |
| ATTATTAATGCCATATTGAG+TGG | 0.542763 | 5.3:-16497255 | MS.gene028109:CDS |
| GTGCTGGTCATCATGGCTGC+AGG | 0.544531 | 5.3:-16497225 | MS.gene028109:CDS |
| TTGAAGTTAGCATATATGCT+GGG | 0.553613 | 5.3:+16496969 | None:intergenic |
| ATATACAAAGCTTTGGAGAA+GGG | 0.553712 | 5.3:-16496920 | MS.gene028109:CDS |
| TCATTTACTTGTTCATCAGT+CGG | 0.558425 | 5.3:+16485666 | None:intergenic |
| CTTGAAAAGTGCCATCATGC+TGG | 0.558468 | 5.3:-16496827 | MS.gene028109:CDS |
| ACTGATGAACAAGTAAATGA+TGG | 0.558662 | 5.3:-16485663 | MS.gene028109:CDS |
| ACACATTTCTCAGAGCTCAA+TGG | 0.560141 | 5.3:-16491149 | MS.gene028109:intron |
| GTGGAGCAATAACAAGCTGC+AGG | 0.560375 | 5.3:-16493160 | MS.gene028109:CDS |
| GTTGAAGTTAGCATATATGC+TGG | 0.561545 | 5.3:+16496968 | None:intergenic |
| AAGAGATGTGCTGGTCATCA+TGG | 0.563733 | 5.3:-16497232 | MS.gene028109:CDS |
| CTTATCCAAATCACGAATCA+GGG | 0.563762 | 5.3:-16495215 | MS.gene028109:CDS |
| CATATACAAAGCTTTGGAGA+AGG | 0.565982 | 5.3:-16496921 | MS.gene028109:CDS |
| TGAGTAGACAAGACAGAGTG+TGG | 0.573006 | 5.3:+16486260 | None:intergenic |
| GCAAAGGAGCTAAGGGAGAG+AGG | 0.574170 | 5.3:-16493809 | MS.gene028109:CDS |
| AGGGAGAGAGGAATTTCAGC+TGG | 0.576672 | 5.3:-16493797 | MS.gene028109:CDS |
| TTAGGTTGCAAAGGAGCTAA+GGG | 0.577621 | 5.3:-16493816 | MS.gene028109:intron |
| TGCTGCAAGTTCGAGTGTTG+TGG | 0.580841 | 5.3:-16498313 | MS.gene028109:CDS |
| CACTACTCTCAATAAGAACA+AGG | 0.584987 | 5.3:+16485607 | None:intergenic |
| CTTACAGTCAAAGCAACCAT+AGG | 0.590094 | 5.3:+16495642 | None:intergenic |
| AGGCACATTGCTGTAGTCAG+TGG | 0.592090 | 5.3:-16495728 | MS.gene028109:CDS |
| CTGGTCATCATGGCTGCAGG+TGG | 0.593654 | 5.3:-16497222 | MS.gene028109:CDS |
| AGTGTTGTGGAGAATTGGAA+CGG | 0.602354 | 5.3:-16498300 | MS.gene028109:CDS |
| AAGCTTTGGAGAAGGGCGAG+GGG | 0.602439 | 5.3:-16496913 | MS.gene028109:CDS |
| TGCATTCTCATGTGAGGTGA+AGG | 0.604384 | 5.3:-16490195 | MS.gene028109:CDS |
| AGTAATTGGAAAACTGAAGA+CGG | 0.605938 | 5.3:-16485742 | MS.gene028109:CDS |
| GCTGCAGGTCATAGTTGGTA+CGG | 0.606551 | 5.3:-16493145 | MS.gene028109:intron |
| ATTGAGTGGAAGAGATGTGC+TGG | 0.608585 | 5.3:-16497241 | MS.gene028109:CDS |
| CGTTAATTGAAAAGCAAGAG+AGG | 0.608856 | 5.3:-16498407 | MS.gene028109:CDS |
| ATCAATGGAAACATACTACC+AGG | 0.611015 | 5.3:-16492082 | MS.gene028109:intron |
| TCAGGCAACTGCTACTCAGA+GGG | 0.615092 | 5.3:-16495523 | MS.gene028109:intron |
| ATGGGAATCAACAAACCAGA+TGG | 0.615528 | 5.3:-16493008 | MS.gene028109:intron |
| GAGAGAGACGACCAGCATGA+TGG | 0.616272 | 5.3:+16496816 | None:intergenic |
| GTCAACGACCACCTTACTGA+CGG | 0.619582 | 5.3:+16495263 | None:intergenic |
| TGGGAGTATTCCTCCATGAG+TGG | 0.623965 | 5.3:+16486280 | None:intergenic |
| AAGTATAATAGGCATTCAGA+AGG | 0.625558 | 5.3:+16491632 | None:intergenic |
| CATATATGCTGGGATTCCCA+AGG | 0.636281 | 5.3:+16496979 | None:intergenic |
| CTCATGTGAGGTGAAGGAAG+TGG | 0.642270 | 5.3:-16490189 | MS.gene028109:CDS |
| GAACTTTCTTCCACTCATGG+AGG | 0.642311 | 5.3:-16486290 | MS.gene028109:CDS |
| AGCTTTGGAGAAGGGCGAGG+GGG | 0.643222 | 5.3:-16496912 | MS.gene028109:CDS |
| GAGTAGACAAGACAGAGTGT+GGG | 0.645165 | 5.3:+16486261 | None:intergenic |
| TGCCTATTATACTTCAGACC+TGG | 0.648906 | 5.3:-16491623 | MS.gene028109:CDS |
| AAAGTCATCCGTCAGTAAGG+TGG | 0.649992 | 5.3:-16495271 | MS.gene028109:CDS |
| GAAGCTTGAGACTTCTACAG+AGG | 0.652517 | 5.3:-16486393 | MS.gene028109:CDS |
| GTCAGGCAACTGCTACTCAG+AGG | 0.652846 | 5.3:-16495524 | MS.gene028109:intron |
| ATATTCAGGCAAGCGATCAG+AGG | 0.654836 | 5.3:-16489951 | MS.gene028109:CDS |
| GAGCCATTACAGGAGTGCAA+TGG | 0.655138 | 5.3:-16490327 | MS.gene028109:intron |
| AGGTTCTGACTTAAAACGAG+AGG | 0.658026 | 5.3:-16487739 | MS.gene028109:CDS |
| TCTTGAATTAGCGAAAGCAA+AGG | 0.661736 | 5.3:+16497135 | None:intergenic |
| GCTCCAAGCCAGATGACCCG+AGG | 0.687823 | 5.3:+16486336 | None:intergenic |
| GCACATTGCTGTAGTCAGTG+GGG | 0.716168 | 5.3:-16495726 | MS.gene028109:CDS |
| CATATGTGCATTCTCATGTG+AGG | 0.730818 | 5.3:-16490201 | MS.gene028109:CDS |
| ACTGAGTCTTGAGAATACCA+AGG | 0.736426 | 5.3:+16495676 | None:intergenic |
| CAAATGCTTACATTACTGTG+GGG | 0.745077 | 5.3:-16486746 | MS.gene028109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 16485593 | 16498606 | 16485593 | ID=MS.gene028109 |
| chr5.3 | mRNA | 16485593 | 16498606 | 16485593 | ID=MS.gene028109.t1;Parent=MS.gene028109 |
| chr5.3 | exon | 16498543 | 16498606 | 16498543 | ID=MS.gene028109.t1.exon1;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16498543 | 16498606 | 16498543 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16498218 | 16498441 | 16498218 | ID=MS.gene028109.t1.exon2;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16498218 | 16498441 | 16498218 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16497131 | 16497277 | 16497131 | ID=MS.gene028109.t1.exon3;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16497131 | 16497277 | 16497131 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16496802 | 16497017 | 16496802 | ID=MS.gene028109.t1.exon4;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16496802 | 16497017 | 16496802 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16495647 | 16495751 | 16495647 | ID=MS.gene028109.t1.exon5;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16495647 | 16495751 | 16495647 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16495437 | 16495541 | 16495437 | ID=MS.gene028109.t1.exon6;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16495437 | 16495541 | 16495437 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16495179 | 16495301 | 16495179 | ID=MS.gene028109.t1.exon7;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16495179 | 16495301 | 16495179 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16493746 | 16493834 | 16493746 | ID=MS.gene028109.t1.exon8;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16493746 | 16493834 | 16493746 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16493146 | 16493182 | 16493146 | ID=MS.gene028109.t1.exon9;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16493146 | 16493182 | 16493146 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16493009 | 16493042 | 16493009 | ID=MS.gene028109.t1.exon10;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16493009 | 16493042 | 16493009 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16492083 | 16492135 | 16492083 | ID=MS.gene028109.t1.exon11;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16492083 | 16492135 | 16492083 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16491607 | 16491684 | 16491607 | ID=MS.gene028109.t1.exon12;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16491607 | 16491684 | 16491607 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16491093 | 16491158 | 16491093 | ID=MS.gene028109.t1.exon13;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16491093 | 16491158 | 16491093 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16490328 | 16490394 | 16490328 | ID=MS.gene028109.t1.exon14;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16490328 | 16490394 | 16490328 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16490180 | 16490233 | 16490180 | ID=MS.gene028109.t1.exon15;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16490180 | 16490233 | 16490180 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16489899 | 16490006 | 16489899 | ID=MS.gene028109.t1.exon16;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16489899 | 16490006 | 16489899 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16487695 | 16487759 | 16487695 | ID=MS.gene028109.t1.exon17;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16487695 | 16487759 | 16487695 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16486721 | 16486799 | 16486721 | ID=MS.gene028109.t1.exon18;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16486721 | 16486799 | 16486721 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16486214 | 16486428 | 16486214 | ID=MS.gene028109.t1.exon19;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16486214 | 16486428 | 16486214 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| chr5.3 | exon | 16485593 | 16485772 | 16485593 | ID=MS.gene028109.t1.exon20;Parent=MS.gene028109.t1 |
| chr5.3 | CDS | 16485593 | 16485772 | 16485593 | ID=cds.MS.gene028109.t1;Parent=MS.gene028109.t1 |
| Gene Sequence |
| Protein sequence |