AlfalfaGEDB | MS.gene45469

M. sativa cultivar XinJiangDaYe / MS.gene45469

KEGG: K14652
GO: GO:0003674 GO:0003824 GO:0003933 GO:0003935 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0019238 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00925.23 PF00926.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45469.t1	XP_003597321.2	94.1	508	29	1	1	508	1	507	4.50E-271	943.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45469.t1	Q9FN89	68.6	513	143	6	1	507	2	502	1.9e-193	676.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45469.t1	G7IHK9	94.1	508	29	1	1	508	1	507	3.3e-271	943.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene45469	0.832552	8.86E-56	-1.69E-46
MS.gene049222	MS.gene45469	0.831548	1.57E-55	-1.69E-46
MS.gene049356	MS.gene45469	0.863313	2.72E-64	-1.69E-46
MS.gene049369	MS.gene45469	0.865963	4.03E-65	-1.69E-46
MS.gene049396	MS.gene45469	0.856264	3.62E-62	-1.69E-46
MS.gene049488	MS.gene45469	0.810577	1.08E-50	-1.69E-46
MS.gene049609	MS.gene45469	0.849444	3.22E-60	-1.69E-46
MS.gene049805	MS.gene45469	0.868322	7.11E-66	-1.69E-46
MS.gene050538	MS.gene45469	0.806328	8.68E-50	-1.69E-46
MS.gene050593	MS.gene45469	0.858574	7.50E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene45469	MS.gene90199	PPI
MS.gene45469	MS.gene02178	PPI
MS.gene45469	MS.gene01192	PPI
MS.gene45469	MS.gene053559	PPI
MS.gene45469	MS.gene028458	PPI
MS.gene45469	MS.gene071898	PPI
MS.gene45469	MS.gene068045	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene45469.t1	MTR_2g096330	96.457	508	17	1	1	508	1	507	1008
MS.gene45469.t1	MTR_2g009270	65.877	422	142	2	88	508	102	522	577
MS.gene45469.t1	MTR_4g094130	66.832	404	133	1	102	505	110	512	572
MS.gene45469.t1	MTR_4g094130	68.052	385	122	1	121	505	1	384	554

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45469.t1	AT5G59750	69.201	513	140	6	1	507	2	502	0.0	710
MS.gene45469.t1	AT5G59750	64.899	547	140	7	1	507	2	536	0.0	693
MS.gene45469.t1	AT5G59750	66.594	458	135	6	1	452	2	447	0.0	601
MS.gene45469.t1	AT5G64300	67.067	416	136	1	90	505	112	526	0.0	588
MS.gene45469.t1	AT2G22450	58.418	392	154	3	92	483	92	474	2.64e-159	461

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Find 117 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGTTATTGAAACAAT+TGG	0.389681	2.1:+7113285	None:intergenic
AACAATCCAGCAAAATTTGT+TGG	0.402087	2.1:-7111944	MS.gene45469:CDS
AAGTCCTCGGATTTCGACTC+TGG	0.423258	2.1:+7113510	None:intergenic
AATCATAAATGCCACATCCT+TGG	0.486532	2.1:+7113829	None:intergenic
AATGGAAGAGTACTCCTTAG+AGG	0.439818	2.1:+7114221	None:intergenic
AATTCTAGCTAACCTTTCCT+TGG	0.419158	2.1:+7114175	None:intergenic
ACATTCAGAATGTTTAACTG+GGG	0.696460	2.1:-7112804	MS.gene45469:CDS
ACATTGGAGTTCGAACTATG+AGG	0.535750	2.1:-7111976	MS.gene45469:CDS
ACCAAAATGGGTCATATCTA+TGG	0.241057	2.1:-7111830	MS.gene45469:CDS
ACCCCAAATCTATGTTTGCT+TGG	0.446947	2.1:+7112606	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATCCAGCAAAATTTGT+TGG	-	chr2.1:7114492-7114511	MS.gene45469:intron	30.0%
ACATTCAGAATGTTTAACTG+GGG	-	chr2.1:7113632-7113651	MS.gene45469:intron	30.0%
ACCTTGATCTTGCAAATTAT+AGG	+	chr2.1:7113799-7113818	None:intergenic	30.0%
ACTAAAGTAGATGGTATGAT+TGG	-	chr2.1:7113952-7113971	MS.gene45469:intron	30.0%
ACTCATCATAGTGTAAGATT+TGG	-	chr2.1:7111986-7112005	MS.gene45469:CDS	30.0%
AGAAACAAAAAGGACCAAAA+TGG	-	chr2.1:7114593-7114612	MS.gene45469:CDS	30.0%
AGTGATTAAAAGATCTAACC+TGG	+	chr2.1:7113890-7113909	None:intergenic	30.0%
ATGAAATTGATTGAAGAAGC+TGG	-	chr2.1:7113705-7113724	MS.gene45469:CDS	30.0%
GAAACAAAAAGGACCAAAAT+GGG	-	chr2.1:7114594-7114613	MS.gene45469:CDS	30.0%
GATGAAAACAACAATGTTGA+AGG	-	chr2.1:7112552-7112571	MS.gene45469:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	7111817	7114641	7111817	ID=MS.gene45469
chr2.1	mRNA	7111817	7114641	7111817	ID=MS.gene45469.t1;Parent=MS.gene45469
chr2.1	exon	7114586	7114641	7114586	ID=MS.gene45469.t1.exon1;Parent=MS.gene45469.t1
chr2.1	CDS	7114586	7114641	7114586	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1
chr2.1	exon	7114188	7114491	7114188	ID=MS.gene45469.t1.exon2;Parent=MS.gene45469.t1
chr2.1	CDS	7114188	7114491	7114188	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1
chr2.1	exon	7113703	7113924	7113703	ID=MS.gene45469.t1.exon3;Parent=MS.gene45469.t1
chr2.1	CDS	7113703	7113924	7113703	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1
chr2.1	exon	7113279	7113604	7113279	ID=MS.gene45469.t1.exon4;Parent=MS.gene45469.t1
chr2.1	CDS	7113279	7113604	7113279	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1
chr2.1	exon	7112990	7113119	7112990	ID=MS.gene45469.t1.exon5;Parent=MS.gene45469.t1
chr2.1	CDS	7112990	7113119	7112990	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1
chr2.1	exon	7112568	7112864	7112568	ID=MS.gene45469.t1.exon6;Parent=MS.gene45469.t1
chr2.1	CDS	7112568	7112864	7112568	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1
chr2.1	exon	7111817	7112008	7111817	ID=MS.gene45469.t1.exon7;Parent=MS.gene45469.t1
chr2.1	CDS	7111817	7112008	7111817	ID=cds.MS.gene45469.t1;Parent=MS.gene45469.t1

Gene Sequence

>MS.gene45469

ATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGGTACATATTTTATTTCTCTAGATAACACAACACTATATTAATTGTTCCTCTATTTGTTGAACTCGTGTTAAATTTTTCTATTATTTATTCAAAGCTTGCATCGGTCATGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTGTAAGTGAAGCTGAAGGTGATCCAGATTGTCCCTCTAAGGAGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGCCAAGGAAAGGTTAGCTAGAATTTTATGTGCGTTCGTTACGTCTAATACATGTTTGGAATCACATTGATTCTAACAAAATCATAGTAGCACAATGACTTCGTTAAAGTACAAAATTGAAACTTTGATCAAAATCAAATTGACTGACATTTATGATAAATATGTTATTGAACATGTTCGTATTAAGTGAATAATTTTGAATTTTGATGACATTTTATTAAGTAATGGATTGATCTTGTTCATATCTAACACCTATATCAATATTTTTTTTGAAGTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGACACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGCAAGTAAAATATCATATAGTATATTGAAGCCTAATGTAGATTGTTGCATATAGTTAGAAGCTCATTTAATTGATATTGTGTAATATATTATTGTTAGGATGCAAAATATGGAACTTCCACGGGTGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTTAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTTTCAATAACTGATTTGATAAGGTAAACAATCTTACTTTCATAATTTTTGCTTATGCAAAGTTTATGATCATTCATTCTTCAATTGTAGAAACAACTTGTGTATGATAAACTTTAATTGAACAAGCACTTAATTAAATTGTTGATCTAAACATATGTTATTAATGTATGTGACGCTTCAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGTAAATATGACTTTGTTAATTAGATTTTCAAGATAAAACTTGTAACTTAGCAATTTATATATGAAAACCTAAGCAAACTAAAGAATAGTATTTTTCTGAATTATAATTTCTTATTGGTTGCTTAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGGTTAGATCTTTTAATCACTTTCACTTACATTGTTTGTGTGCTTCAAATCAAATAATGATCAACTAAAGTAGATGGTATGATTGGACTTTCGGATTAGTTAATTTTTTTGTCTGAATACCGAATTTTAAAAAAACAAAAACTAAGTTTTACTTGAATTTTTGTTCACGTATCTTGCTTTGATTGTATAATAAGTTTATTTCTGATACATTGAGTAAAAAAAAAGTTTAATTTTGATACATATTTTACATAATTTTTACATATTTTATTATGAAAAGCATAGCTGCCAAACTCGCCACCAATAAATGTTGATTAGTAGATAATTGCAGATTTGAATTCACGTCTAAGCATATCAAATGTCGCTACAACTACCAATTGAACAATACTTATGCACTTCGGTGACATGTAAAACATTTTTGAATGTTGGTTGATAGTATAAAAAAATCTTCCTAGTATTAGTGAATACAAATCAAATCCTTGTATAATTTGCAATATTTCATAAAACTATTAAAAATGTGATTCCAAAACAAGCTATTATAAGTTGTATTTGATAAATGTGCAGATTTTGAGGGACATTGGAGTTCGAACTATGAGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTAAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACTGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAAATGGGTCATATCTATGGGTCTGATATATAA

Protein sequence

>MS.gene45469.t1

MDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFVSEAEGDPDCPSKEYSSIEHALNALRQGKFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPDTEEEDSSAPTFTITVDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI