AlfalfaGEDB | MS.gene028744

M. sativa cultivar XinJiangDaYe / MS.gene028744

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02309.19 PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028744.t1	XP_003597191.2	93.3	810	53	1	1	809	1	810	0.00E+00	1470.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028744.t1	Q9ZTX9	58.3	763	274	12	54	809	63	788	6.9e-238	825.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028744.t1	Q2HSV9	93.3	810	53	1	1	809	1	810	0.0e+00	1470.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene028744.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002513	MS.gene028744	PPI
MS.gene004184	MS.gene028744	PPI
MS.gene01487	MS.gene028744	PPI
MS.gene028744	MS.gene45858	PPI
MS.gene028744	MS.gene26397	PPI
MS.gene028744	MS.gene48257	PPI
MS.gene028744	MS.gene059228	PPI
MS.gene047370	MS.gene028744	PPI
MS.gene39530	MS.gene028744	PPI
MS.gene47580	MS.gene028744	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene028744.t1	MTR_2g093740	93.951	810	48	1	1	809	1	810	1546
MS.gene028744.t1	MTR_2g093740	92.467	823	48	2	1	809	1	823	1535
MS.gene028744.t1	MTR_2g093740	93.867	750	45	1	1	749	1	750	1429
MS.gene028744.t1	MTR_2g093740	92.267	763	45	2	1	749	1	763	1419
MS.gene028744.t1	MTR_2g093740	94.083	676	39	1	135	809	5	680	1331
MS.gene028744.t1	MTR_2g093740	92.308	689	39	2	135	809	5	693	1320
MS.gene028744.t1	MTR_2g093740	93.595	687	43	1	1	686	1	687	1300
MS.gene028744.t1	MTR_2g093740	91.857	700	43	2	1	686	1	700	1290
MS.gene028744.t1	MTR_2g093740	93.994	616	36	1	135	749	5	620	1214
MS.gene028744.t1	MTR_2g093740	92.051	629	36	2	135	749	5	633	1203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028744.t1	AT5G60450	58.279	767	276	12	50	809	35	764	0.0	828
MS.gene028744.t1	AT5G60450	58.322	763	274	12	54	809	63	788	0.0	825
MS.gene028744.t1	AT5G62000	36.501	863	440	21	14	806	29	853	4.97e-171	516
MS.gene028744.t1	AT5G62000	36.501	863	440	21	14	806	29	853	4.97e-171	516
MS.gene028744.t1	AT5G62000	36.501	863	440	21	14	806	29	853	4.97e-171	516
MS.gene028744.t1	AT5G62000	36.501	863	440	21	14	806	29	853	4.97e-171	516
MS.gene028744.t1	AT5G62000	37.260	832	419	20	14	775	29	827	1.16e-170	514
MS.gene028744.t1	AT2G33860	49.163	478	200	9	55	529	53	490	1.89e-146	444
MS.gene028744.t1	AT3G61830	46.970	396	187	8	43	430	12	392	1.68e-116	366
MS.gene028744.t1	AT3G61830	49.020	102	51	1	672	773	480	580	2.57e-24	108

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Find 186 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATGCTAAAAGCATC+AGG	0.463277	2.1:-9185520	MS.gene028744:CDS
AAAATGACATTATGGTTGTT+GGG	0.432406	2.1:-9183824	MS.gene028744:CDS
AAACTTAACTTTCACTCATT+AGG	0.322689	2.1:-9184461	MS.gene028744:CDS
AAATGACATTATGGTTGTTG+GGG	0.611574	2.1:-9183823	MS.gene028744:CDS
AAATTTCGCCATATTTATCG+AGG	0.663380	2.1:-9186132	MS.gene028744:intron
AACATTCTCTAGTTGGAAAT+TGG	0.212031	2.1:+9184352	None:intergenic
AACCTCATCATTCTCCTTAT+TGG	0.160497	2.1:+9187044	None:intergenic
AACTAGATTCTAACTACTGT+TGG	0.511297	2.1:+9183211	None:intergenic
AAGAAGAATATATGTTGCAA+TGG	0.561906	2.1:-9187475	MS.gene028744:CDS
AAGACCTGAATGGTGTGGAG+TGG	0.664698	2.1:-9186155	MS.gene028744:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACATTATGGTTGTTG+GGG	-	chr2.1:9186901-9186920	MS.gene028744:intron	30.0%
AAATTTCGCCATATTTATCG+AGG	-	chr2.1:9184592-9184611	MS.gene028744:CDS	30.0%
AACATTCTCTAGTTGGAAAT+TGG	+	chr2.1:9186375-9186394	None:intergenic	30.0%
ACAGAAATATTGTGATTGGT+TGG	-	chr2.1:9184623-9184642	MS.gene028744:CDS	30.0%
ACTTTGTGTATATCACCATA+TGG	+	chr2.1:9186317-9186336	None:intergenic	30.0%
AGAAATGAAGTTGGAATATC+AGG	-	chr2.1:9186431-9186450	MS.gene028744:intron	30.0%
AGATTCATAGTTACCTTATG+AGG	+	chr2.1:9184082-9184101	None:intergenic	30.0%
CATACTAATCTTGCATCAAA+TGG	-	chr2.1:9186035-9186054	MS.gene028744:intron	30.0%
CTTCATCTTATCTTGAACTA+TGG	-	chr2.1:9183364-9183383	MS.gene028744:CDS	30.0%
GAAAATCCAAATAGTCTACA+AGG	+	chr2.1:9186566-9186585	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	9183213	9187533	9183213	ID=MS.gene028744
chr2.1	mRNA	9183213	9187533	9183213	ID=MS.gene028744.t1;Parent=MS.gene028744
chr2.1	exon	9187186	9187533	9187186	ID=MS.gene028744.t1.exon1;Parent=MS.gene028744.t1
chr2.1	CDS	9187186	9187533	9187186	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9187011	9187067	9187011	ID=MS.gene028744.t1.exon2;Parent=MS.gene028744.t1
chr2.1	CDS	9187011	9187067	9187011	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9186445	9186630	9186445	ID=MS.gene028744.t1.exon3;Parent=MS.gene028744.t1
chr2.1	CDS	9186445	9186630	9186445	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9186133	9186217	9186133	ID=MS.gene028744.t1.exon4;Parent=MS.gene028744.t1
chr2.1	CDS	9186133	9186217	9186133	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9185956	9186046	9185956	ID=MS.gene028744.t1.exon5;Parent=MS.gene028744.t1
chr2.1	CDS	9185956	9186046	9185956	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9185679	9185843	9185679	ID=MS.gene028744.t1.exon6;Parent=MS.gene028744.t1
chr2.1	CDS	9185679	9185843	9185679	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9185455	9185574	9185455	ID=MS.gene028744.t1.exon7;Parent=MS.gene028744.t1
chr2.1	CDS	9185455	9185574	9185455	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9185299	9185377	9185299	ID=MS.gene028744.t1.exon8;Parent=MS.gene028744.t1
chr2.1	CDS	9185299	9185377	9185299	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9184940	9185102	9184940	ID=MS.gene028744.t1.exon9;Parent=MS.gene028744.t1
chr2.1	CDS	9184940	9185102	9184940	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9184097	9184857	9184097	ID=MS.gene028744.t1.exon10;Parent=MS.gene028744.t1
chr2.1	CDS	9184097	9184857	9184097	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9183810	9184000	9183810	ID=MS.gene028744.t1.exon11;Parent=MS.gene028744.t1
chr2.1	CDS	9183810	9184000	9183810	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1
chr2.1	exon	9183213	9183396	9183213	ID=MS.gene028744.t1.exon12;Parent=MS.gene028744.t1
chr2.1	CDS	9183213	9183396	9183213	ID=cds.MS.gene028744.t1;Parent=MS.gene028744.t1

Gene Sequence

>MS.gene028744

ATGGATATTGATCTGAATGATTCCACAACACAAGTTAAGAAGAATATATGTTGCAATGGTGAATGTGAGAAAAGTGTTTGTTGTGTTTGCACTTTATCTTCTTCTTCATCACCAACATGTTCATCTTCTAGTTCCACTTCGGCTCTTGTTTCTTCATCTTATCTTGAACTATGGCATTCTTGTGCTGGACCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAAGGTCATTTGGAACAAGTTGCATCTTTGTCTCTCTTTTCTTCATTGGAAATTCCAACTTATGGTCTTCAACCACAAATCTTTTGTAGGGTTGTCAATGTTCAATTACTTGTAAGCACTTAAATTTAGTTAACTTTACTCTTTCATTGAATTGTATATGCTTAATTCACATAGACTTTTTTCATTTGATTTTGTTTAATATTTTCTGTATATTTTTTTCCATTAACAGGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTTCCACAGGCAGAGGTAGGTTTTATGGTTTAACATATTTGGTCTTATTTCTTTTTTGATGCATTTTGGTTTGGTTTTCATTAAAAATTGGCAAGTTTTGGAATATTATTGTTTTTTTGCAAGTTATAGATTTATAAAAGATGTAATTAATTAGTAAAAAAAATGTACTTAACAATTGATACACATCATTGATGAATGGCTAATGTGATATTGTGATTTATCATTAAACTTTGTTGATCCTCAATAGCTGAACTCAAAAAATTATAAATCATAACTTCATAGATTCCTTTGTCGAATTTCTCCTTGGGATCCAAATACTAGTGTTATACATGATGCAGCAATTGCTTCTTTGCTCCTACCTCATAAGGTAACTATGAATCTTGTGTTGCATTCAGTTAGCAGGGATGTGTTTGGATGACAAAGAGCCTGAAGGTTTAGAAGCAGATGGAGAGGGAGATGGAAGATCGCCTACAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGTATGAGTATGACACTATGAGTCTGTTTGGATTGGCTTATTTGAGTTTATCTACTGGCATACATACTTGTGACACTGTTTGGAAGAACATATAAAAGTAGCTTATAATGACATGTCTGTCAGCTATTTTCAGCTTATTTTCATTAGCTAATTTATTTAATTTTCTGACCTGAAATTGTTGGAAAGTTCGAAGGTGGTGATGAATTCTGTTTATTTTCACTTCTTTAGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGAATGGTGTGGAGTGGAAATTTCGCCATATTTATCGAGGTAGGTGAAACAGAAATATTGTGATTGGTTGGATTCAAATATTGACAATGAATGAAACAGAAATTCCATGTTGTAATCTTTGTCAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTGCTTTTGTTAGCCAAAAGAATCTTGTTTCTGGGGACGCAGTGCTCTTTCTAAGGTGTGTGTTTGTGTTGAACTGAGAGCTTTTGAATTGGCATTAATCTGTATATGCTAGATATTTCATATGTTGTTCCTGCAGTGTACCTTACTGCTCATGGATCTCTATGTAGGGGTGAAAACGGAGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAACGGTCTTCCTGAATCAATTGTTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCAGTGGCTAATGCTATCTCCGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGTACTTGATTAGCGGATACAGTTTTCTTGTTTTGCAAAATGTTGGATAAAGAGTTATTTTATCCCACATGTATATTTAATATGTTTGAATTTGATGTAATACAGAGCTAGTCATGCCGATTTCGTTGTGCCTTACCAAAAGTATGCTAAAAGCATCAGGAACCCACTGACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTCAGCTATAACATTAGTTATACATGTTTAGCCATTATCTGTATTCTACAACATGATATCATTTTCATGTCTTGCAGGTGTAGTAGCGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGATGCTTGATGGTATATTTTCTACTTTCTTTATACACTAATACTATGCAGTATGTTACGATCATATTATACATTTGGTATTTGCTATAGATATTTATCATCACCAACTGTGCCGTTGAAGCGTACGCCTTTCTAAACATTACATTAATATATTAATAACCAAATGATGAGAGCTTAATCAATAAAAGCTATCTGTGATATTACACAGGTCCGATGGGATGAGGATATTGAGGCTAATCATCAAGATAGAGTCTCTCCTTGGGAGATCGATCCGTCTACTTCTCTCCCTCCCTTGAACATTCAATCTTGTCGAAGGCTGAAGAAACTGCGGACGGGTCTGCAAGTTGAATCACCCAGTCACCTTATCACTGGTATGAATCCAAATGTACGAGATAACTAAATAACATTAACCACTAAACTTATTGTGTCCTAATCACCCCATCTTCATCGCAGCTGGAGACAGTGGGTTTATGGACTTTGATGAGTCTATAAGATCGACCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGAAAGAATTTGATATCAATTCTCTAAGACATACTAATCTTGCATCAAATGGAGCAAGAAAGATTACTTCTTCCGAGTTTACGAGGGTTCAGCCTTCTAGTTATGCAGACTTCACGGAAACGAACCGGTTTCCTAGGGTCTTGCAAGGTCAAGAAATATATCCATTGAGATCCCTGGCAGGAAAGGTTGATCTAAACCTTAACTCTTGGGGTAAAACCAATGTTAGTTACACAAATTATAACCTGCATAATGCAACCAAACTTAACTTTCACTCATTAGGATCAGAAGTTCTTCAAAATTCCTCTTTTCCATATGGTGATATACACAAAGTTGGTCAAGGTAGCAGCATGCTGTGCTCCAAACCAACCAATTTCCAACTAGAGAATGTTTCATTTAATACTCCTTCAGCTCAGATAGGTGCATTGAGAAATGAAGTTGGAATATCAGGTTTCACAATCCGAAACAAGCAGAAGCTGCAGGACAATATTTCTGCTGCTGCTTCTCTAGGTGCAAACTTGAGGATTTCAAATGACAAAAATTTCAACGCGAAGGTAAATCCTTGTAGACTATTTGGATTTTCCTTATCGGCGGCGGAAACCACCTCACAAAATCTACAGAACTCTGCTAAAAGAAGTTGCACGAAGGTGAGCGACGATAGCAACCGAGTTATATTGTGATATGAATTTTTCTCTATTCCTTTGACAATTTGCCAACGCATATGTAATATACAATGAATGAAGGTTCACAAACAAGGGAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGTCTTCTAAGAGATCCTGACAAAGGATGGAAAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGCAGTAAGTTTTACTAAAAATGCTTCTTTTGTCTATTTGTAAATGGTATACACACCATCTGTTTCAGCCATTAAATAATTATAAATATTTCAAAATATCGATCTAATGGCTATGACTTATGTTGTCCCGGTACACCAATTAAAAACGGATGCACCTTGACTTCGATTGTCTGCTGTAACAATATCACACATTCACCAGTGTAAGTTAGAAAACCATTGAATAAATATCATATGGTTCATCCAGAATGAGTCGTCGGATCATCATTCAATGGTTTTTTTGACTGACTGTGCCTTGTGATATTATATTTCAAATGTCGGGCCTGAATGAGTTGTCCTATTGAATCATTCTATCCTATGTAACATATTATGGATGATATGATACATACTGAAAAAATACACTCACCCTTTTGCCTGCAGTGAGTTCTGTGTTATGGTATCAAAAATCCATATATATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAACCAGAGTTGTTTGGAACATACACCATTGATTGTGGAGGCTTCAAAGTCTTCCTCAGTGGGACAGCCAGATTCTTCTCCAACAGTAGTTAGAATCTAG

Protein sequence

>MS.gene028744.t1

MDIDLNDSTTQVKKNICCNGECEKSVCCVCTLSSSSSPTCSSSSSTSALVSSSYLELWHSCAGPLTSLPKKGNVVVYFPQGHLEQVASLSLFSSLEIPTYGLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMCLDDKEPEGLEADGEGDGRSPTKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLNGVEWKFRHIYRGQPRRHLLTTGWSAFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCSPSFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYAKSIRNPLTIGTRFKMKFEMDESPERRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEANHQDRVSPWEIDPSTSLPPLNIQSCRRLKKLRTGLQVESPSHLITAGDSGFMDFDESIRSTKVLQGQEKTSFMSLYYGCDTVTKQKEFDINSLRHTNLASNGARKITSSEFTRVQPSSYADFTETNRFPRVLQGQEIYPLRSLAGKVDLNLNSWGKTNVSYTNYNLHNATKLNFHSLGSEVLQNSSFPYGDIHKVGQGSSMLCSKPTNFQLENVSFNTPSAQIGALRNEVGISGFTIRNKQKLQDNISAAASLGANLRISNDKNFNAKVNPCRLFGFSLSAAETTSQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLVSELERLFGMEGLLRDPDKGWKILYTDSENDIMVVGDDPWHEFCVMVSKIHIYTQEEVEKMTIGMMNDDNQSCLEHTPLIVEASKSSSVGQPDSSPTVVRI