Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48914.t1 | XP_013455085.1 | 99.5 | 203 | 1 | 0 | 19 | 221 | 19 | 221 | 1.50E-114 | 422.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48914.t1 | O22152 | 71.1 | 211 | 51 | 6 | 20 | 221 | 20 | 229 | 7.0e-76 | 285.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48914.t1 | A0A072UJ49 | 99.5 | 203 | 1 | 0 | 19 | 221 | 19 | 221 | 1.1e-114 | 422.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48914.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene48914 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene48914 | 0.821622 | 3.66E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene48914 | 0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene48914 | 0.833743 | 4.48E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene48914 | 0.809251 | 2.07E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene48914 | 0.818864 | 1.57E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene48914 | 0.815386 | 9.49E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene48914 | 0.818906 | 1.53E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene48914 | 0.830858 | 2.32E-55 | -1.69E-46 |
| MS.gene059228 | MS.gene48914 | 0.980487 | 2.48E-150 | -1.69E-46 |
| MS.gene059894 | MS.gene48914 | 0.801648 | 8.15E-49 | -1.69E-46 |
| MS.gene060005 | MS.gene48914 | 0.850164 | 2.03E-60 | -1.69E-46 |
| MS.gene06037 | MS.gene48914 | 0.834844 | 2.37E-56 | -1.69E-46 |
| MS.gene061112 | MS.gene48914 | 0.846225 | 2.48E-59 | -1.69E-46 |
| MS.gene061265 | MS.gene48914 | 0.842367 | 2.70E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002513 | MS.gene48914 | PPI |
| MS.gene39530 | MS.gene48914 | PPI |
| MS.gene062560 | MS.gene48914 | PPI |
| MS.gene48914 | MS.gene028744 | PPI |
| MS.gene48914 | MS.gene043573 | PPI |
| MS.gene48914 | MS.gene26397 | PPI |
| MS.gene047370 | MS.gene48914 | PPI |
| MS.gene47580 | MS.gene48914 | PPI |
| MS.gene007633 | MS.gene48914 | PPI |
| MS.gene004184 | MS.gene48914 | PPI |
| MS.gene48914 | MS.gene42837 | PPI |
| MS.gene31320 | MS.gene48914 | PPI |
| MS.gene08601 | MS.gene48914 | PPI |
| MS.gene08711 | MS.gene48914 | PPI |
| MS.gene01487 | MS.gene48914 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48914.t1 | MTR_4g025900 | 99.548 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 3.86e-168 | 462 |
| MS.gene48914.t1 | MTR_4g101660 | 71.292 | 209 | 52 | 6 | 18 | 221 | 13 | 218 | 1.26e-92 | 271 |
| MS.gene48914.t1 | MTR_4g114730 | 53.368 | 193 | 64 | 4 | 20 | 206 | 11 | 183 | 3.15e-60 | 187 |
| MS.gene48914.t1 | MTR_2g087740 | 52.551 | 196 | 82 | 5 | 19 | 211 | 8 | 195 | 3.68e-57 | 180 |
| MS.gene48914.t1 | MTR_4g050300 | 55.215 | 163 | 62 | 3 | 22 | 184 | 8 | 159 | 3.77e-51 | 164 |
| MS.gene48914.t1 | MTR_5g034030 | 50.633 | 158 | 70 | 2 | 23 | 179 | 12 | 162 | 7.46e-47 | 154 |
| MS.gene48914.t1 | MTR_5g046230 | 46.875 | 160 | 65 | 5 | 21 | 178 | 14 | 155 | 7.93e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48914.t1 | AT2G45190 | 68.720 | 211 | 58 | 5 | 19 | 221 | 19 | 229 | 1.08e-96 | 281 |
| MS.gene48914.t1 | AT4G00180 | 62.661 | 233 | 59 | 10 | 8 | 219 | 13 | 238 | 5.67e-81 | 242 |
| MS.gene48914.t1 | AT4G00180 | 61.722 | 209 | 57 | 9 | 32 | 219 | 1 | 207 | 2.05e-68 | 209 |
| MS.gene48914.t1 | AT2G45190 | 64.848 | 165 | 50 | 5 | 65 | 221 | 1 | 165 | 6.57e-66 | 201 |
| MS.gene48914.t1 | AT2G26580 | 56.364 | 165 | 54 | 2 | 22 | 186 | 8 | 154 | 4.70e-57 | 178 |
| MS.gene48914.t1 | AT2G26580 | 56.364 | 165 | 54 | 2 | 22 | 186 | 8 | 154 | 4.70e-57 | 178 |
| MS.gene48914.t1 | AT1G08465 | 56.897 | 174 | 51 | 5 | 22 | 188 | 7 | 163 | 5.33e-56 | 176 |
| MS.gene48914.t1 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 20 | 180 | 3.41e-40 | 137 |
| MS.gene48914.t1 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 51 | 211 | 1.79e-39 | 137 |
| MS.gene48914.t1 | AT1G69180 | 40.127 | 157 | 76 | 2 | 22 | 178 | 18 | 156 | 6.94e-31 | 112 |
Find 55 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTAGCAGGTGGAGGTTT+AGG | 0.195251 | 4.3:+72664228 | None:intergenic |
| CTTCAATCCTCAAACTCTTA+TGG | 0.288001 | 4.3:-72664784 | MS.gene48914:intron |
| CACTTTCCACACATTCATTT+CGG | 0.297543 | 4.3:-72661600 | MS.gene48914:CDS |
| AGAGTTGTTGCTGTTGTTGC+TGG | 0.315337 | 4.3:+72665110 | None:intergenic |
| TATTAGCAGGTGGAGGTTTA+GGG | 0.330394 | 4.3:+72664229 | None:intergenic |
| GCCTCTCTGTGGCTTATATC+AGG | 0.334060 | 4.3:+72661832 | None:intergenic |
| ATCATCGAATCATTTGGATT+TGG | 0.340963 | 4.3:+72664285 | None:intergenic |
| TTCTTCACGGGTTGATGATC+AGG | 0.349751 | 4.3:+72661570 | None:intergenic |
| AACAAACACACTTCTTTAGT+AGG | 0.360387 | 4.3:+72661324 | None:intergenic |
| TGTCCAAGGTGAAGCTGATT+AGG | 0.385355 | 4.3:+72664813 | None:intergenic |
| GTGTTCATCATCGAATCATT+TGG | 0.392842 | 4.3:+72664279 | None:intergenic |
| TTACTTGATGAAGCGGTTGT+AGG | 0.396976 | 4.3:+72662634 | None:intergenic |
| TGTTGCTGTTGTTGCTGGTC+CGG | 0.423782 | 4.3:+72665115 | None:intergenic |
| GAGGACGTGCTTATGAAAGA+TGG | 0.432558 | 4.3:-72661379 | MS.gene48914:CDS |
| TTCATCATCATGTTTGTTGA+AGG | 0.455442 | 4.3:+72664315 | None:intergenic |
| AATTTCTTACGTCTATTAGC+AGG | 0.457462 | 4.3:+72664216 | None:intergenic |
| GAGATCCAACGTATCAAAGC+TGG | 0.478771 | 4.3:-72661859 | MS.gene48914:CDS |
| ACACATACCATAAGAGTTTG+AGG | 0.484716 | 4.3:+72664777 | None:intergenic |
| GAAGAAAGCTAATGTTCGTC+AGG | 0.494623 | 4.3:-72661553 | MS.gene48914:intron |
| CGAACATTAGCTTTCTTCAC+GGG | 0.494923 | 4.3:+72661558 | None:intergenic |
| ACAAACACACTTCTTTAGTA+GGG | 0.496640 | 4.3:+72661325 | None:intergenic |
| GGAACTCTCTGTCTCTTCTC+CGG | 0.501243 | 4.3:+72662662 | None:intergenic |
| CGAAATGAATGTGTGGAAAG+TGG | 0.502844 | 4.3:+72661601 | None:intergenic |
| TTGTTGCTGGTCCGGTGAAA+AGG | 0.508490 | 4.3:+72665123 | None:intergenic |
| ACAGCAACAACTCTCTCCTT+CGG | 0.518591 | 4.3:-72665101 | MS.gene48914:CDS |
| TGCAATGGACATAACAAAGC+TGG | 0.526911 | 4.3:+72665077 | None:intergenic |
| ATTAAACTTACTTGATGAAG+CGG | 0.531165 | 4.3:+72662627 | None:intergenic |
| ACGAACATTAGCTTTCTTCA+CGG | 0.533864 | 4.3:+72661557 | None:intergenic |
| AGGTGAAGCTGATTAGGAGC+AGG | 0.535879 | 4.3:+72664819 | None:intergenic |
| TTACGTCTATTAGCAGGTGG+AGG | 0.545636 | 4.3:+72664222 | None:intergenic |
| CTGGTCCGGTGAAAAGGAAG+TGG | 0.549720 | 4.3:+72665129 | None:intergenic |
| AGGACGTGCTTATGAAAGAT+GGG | 0.553995 | 4.3:-72661378 | MS.gene48914:CDS |
| TTTCATTGTGTAGGATTCAG+AGG | 0.560695 | 4.3:-72661398 | MS.gene48914:intron |
| ATGAAGCGGTTGTAGGCAGA+TGG | 0.560728 | 4.3:+72662641 | None:intergenic |
| TTCTTACGTCTATTAGCAGG+TGG | 0.566691 | 4.3:+72664219 | None:intergenic |
| GCTCCTAATCAGCTTCACCT+TGG | 0.572863 | 4.3:-72664816 | MS.gene48914:CDS |
| GATTCCCAGCTTTGATACGT+TGG | 0.580008 | 4.3:+72661854 | None:intergenic |
| AAAGGAAGTGGATGATGAAG+AGG | 0.587043 | 4.3:+72665141 | None:intergenic |
| AGATCCAACGTATCAAAGCT+GGG | 0.600203 | 4.3:-72661858 | MS.gene48914:CDS |
| GAAATGAATGTGTGGAAAGT+GGG | 0.615090 | 4.3:+72661602 | None:intergenic |
| ATGATGAACACAATGAGAGG+AGG | 0.619560 | 4.3:-72664267 | MS.gene48914:CDS |
| TGATGAACACAATGAGAGGA+GGG | 0.621086 | 4.3:-72664266 | MS.gene48914:CDS |
| CACGCATGTTAACTGAGAGA+AGG | 0.621310 | 4.3:+72664853 | None:intergenic |
| CATGTTAACTGAGAGAAGGT+TGG | 0.622869 | 4.3:+72664857 | None:intergenic |
| TCGATGATGAACACAATGAG+AGG | 0.637488 | 4.3:-72664270 | MS.gene48914:CDS |
| ACATAACAAAGCTGGTCCGA+AGG | 0.642303 | 4.3:+72665085 | None:intergenic |
| GATTGAAGTAAGTGTGTCCA+AGG | 0.648511 | 4.3:+72664799 | None:intergenic |
| GTCTTGAACAAACTTGTGCA+AGG | 0.649953 | 4.3:+72664906 | None:intergenic |
| CAGTGTCACAGAAATTGCAA+TGG | 0.650774 | 4.3:+72665062 | None:intergenic |
| GAAGCTGATTAGGAGCAGGA+AGG | 0.664477 | 4.3:+72664823 | None:intergenic |
| TTTCTGTGACACTGTTCTCG+CGG | 0.670363 | 4.3:-72665053 | MS.gene48914:intron |
| CTGCACTAAAAGCCTCTCTG+TGG | 0.673003 | 4.3:+72661821 | None:intergenic |
| AAGACTGTGACAGTGAGATG+TGG | 0.685505 | 4.3:-72664888 | MS.gene48914:CDS |
| TCCTGATATAAGCCACAGAG+AGG | 0.691291 | 4.3:-72661833 | MS.gene48914:CDS |
| ATAAGTCCGAAATGAATGTG+TGG | 0.723401 | 4.3:+72661594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAATTTTTAT+TGG | - | chr4.3:72664776-72664795 | MS.gene48914:intron | 0.0% |
| !!! | TATAATTTTTAATTTTTATT+GGG | - | chr4.3:72664777-72664796 | MS.gene48914:intron | 0.0% |
| !! | AAATTGAAAATAATCTAAAA+TGG | + | chr4.3:72664747-72664766 | None:intergenic | 10.0% |
| !! | AGAAAAAAAAAGAAAAAAAA+AGG | + | chr4.3:72664999-72665018 | None:intergenic | 10.0% |
| !! | ATATATATATACATATAGTT+TGG | + | chr4.3:72661841-72661860 | None:intergenic | 10.0% |
| !!! | AATTGAAAATAATCTAAAAT+GGG | + | chr4.3:72664746-72664765 | None:intergenic | 10.0% |
| !!! | ATTTAACATTATTTTTGTTT+TGG | - | chr4.3:72663087-72663106 | MS.gene48914:intron | 10.0% |
| !!! | TTTGTTCATTTTTTTTATAA+GGG | - | chr4.3:72662838-72662857 | MS.gene48914:intron | 10.0% |
| !!! | TTTTCTTTATGAATTTTTTT+TGG | - | chr4.3:72663420-72663439 | MS.gene48914:intron | 10.0% |
| !!! | TTTTGTTCATTTTTTTTATA+AGG | - | chr4.3:72662837-72662856 | MS.gene48914:intron | 10.0% |
| !!! | TTTTTTATTTTGTTTTTCTT+AGG | - | chr4.3:72661547-72661566 | MS.gene48914:intron | 10.0% |
| !! | AAAATTCATAAAGAAAATGT+TGG | + | chr4.3:72663417-72663436 | None:intergenic | 15.0% |
| !! | AAATCTATTTAAACTTCTTT+AGG | - | chr4.3:72663532-72663551 | MS.gene48914:intron | 15.0% |
| !! | AAGAAAAATAAATTCATAAG+TGG | + | chr4.3:72664479-72664498 | None:intergenic | 15.0% |
| !! | AAGGAAATTATTATCATAAA+AGG | - | chr4.3:72664016-72664035 | MS.gene48914:intron | 15.0% |
| !! | ATCAATTTATGAAATTATCT+AGG | - | chr4.3:72661978-72661997 | MS.gene48914:intron | 15.0% |
| !! | CTCTAATTTGAAAATAATAT+TGG | + | chr4.3:72663382-72663401 | None:intergenic | 15.0% |
| !! | GATAATTCATTTAAATTTAG+TGG | - | chr4.3:72664516-72664535 | MS.gene48914:intron | 15.0% |
| !! | GGTTTAATTAATTATTATTC+AGG | - | chr4.3:72662129-72662148 | MS.gene48914:intron | 15.0% |
| !! | TACTTCAAAATATTTACAAA+AGG | - | chr4.3:72663493-72663512 | MS.gene48914:intron | 15.0% |
| !! | TTAATTAATTATTATTCAGG+AGG | - | chr4.3:72662132-72662151 | MS.gene48914:intron | 15.0% |
| !! | TTGAAGATTTGTAAATTTAA+TGG | - | chr4.3:72661931-72661950 | MS.gene48914:intron | 15.0% |
| !!! | AAAATATGATTTGATTTTCA+GGG | - | chr4.3:72664600-72664619 | MS.gene48914:intron | 15.0% |
| !!! | AATCAAATCATATTTTATCA+AGG | + | chr4.3:72664596-72664615 | None:intergenic | 15.0% |
| !!! | AGTAAAAGAATGAAATTTTT+TGG | + | chr4.3:72662935-72662954 | None:intergenic | 15.0% |
| !!! | ATGATAATAATTTCCTTTTT+TGG | + | chr4.3:72664013-72664032 | None:intergenic | 15.0% |
| !!! | ATTTATGTATATGTATTTTG+TGG | - | chr4.3:72663018-72663037 | MS.gene48914:intron | 15.0% |
| !!! | CATTCATTTTAAGTTATTTA+TGG | - | chr4.3:72663882-72663901 | MS.gene48914:intron | 15.0% |
| !!! | TAAAATATGATTTGATTTTC+AGG | - | chr4.3:72664599-72664618 | MS.gene48914:intron | 15.0% |
| !!! | TGTAAATTTAATGGATTATT+TGG | - | chr4.3:72661940-72661959 | MS.gene48914:intron | 15.0% |
| !!! | TTTCTTTTTTTTTCTTCTTT+TGG | - | chr4.3:72665004-72665023 | MS.gene48914:intron | 15.0% |
| !!! | TTTTTTACTAAAAATGGTAT+GGG | - | chr4.3:72664356-72664375 | MS.gene48914:intron | 15.0% |
| !!! | TTTTTTTACTAAAAATGGTA+TGG | - | chr4.3:72664355-72664374 | MS.gene48914:intron | 15.0% |
| !! | AAAGAAAATGTTGGAAATTA+GGG | + | chr4.3:72663408-72663427 | None:intergenic | 20.0% |
| !! | AATCTTAACTCTTAATCAAA+AGG | + | chr4.3:72661508-72661527 | None:intergenic | 20.0% |
| !! | ACTAAAGAATATTTGTATCT+AGG | - | chr4.3:72662986-72663005 | MS.gene48914:intron | 20.0% |
| !! | ACTAGTTAAACATACTAAAA+AGG | + | chr4.3:72664106-72664125 | None:intergenic | 20.0% |
| !! | AGAGAAAAATTATAATGATG+AGG | - | chr4.3:72663671-72663690 | MS.gene48914:intron | 20.0% |
| !! | ATACCCTAATATTTAAAGAA+TGG | - | chr4.3:72663950-72663969 | MS.gene48914:intron | 20.0% |
| !! | ATATATACATATAGTTTGGT+TGG | + | chr4.3:72661837-72661856 | None:intergenic | 20.0% |
| !! | ATCTTAACTCTTAATCAAAA+GGG | + | chr4.3:72661507-72661526 | None:intergenic | 20.0% |
| !! | TAAAGAAAATGTTGGAAATT+AGG | + | chr4.3:72663409-72663428 | None:intergenic | 20.0% |
| !! | TACCCTAATATTTAAAGAAT+GGG | - | chr4.3:72663951-72663970 | MS.gene48914:intron | 20.0% |
| !!! | ATTTTTGTATTCTGGAAATT+AGG | - | chr4.3:72662050-72662069 | MS.gene48914:intron | 20.0% |
| !!! | CAAATGTTTATCTTAGTTTT+CGG | - | chr4.3:72661770-72661789 | MS.gene48914:intron | 20.0% |
| !!! | TGTATTATTTTCTCATTTGT+GGG | - | chr4.3:72664835-72664854 | MS.gene48914:CDS | 20.0% |
| !!! | TGTTTTGTATTTTTGTATTC+TGG | - | chr4.3:72662042-72662061 | MS.gene48914:intron | 20.0% |
| !!! | TTTGTTGATTATGAGAAATT+TGG | - | chr4.3:72662108-72662127 | MS.gene48914:intron | 20.0% |
| !!! | TTTTGCTTTTCTTCATTAAT+TGG | + | chr4.3:72662561-72662580 | None:intergenic | 20.0% |
| ! | AAAATCGCAATTAAAATCGA+AGG | + | chr4.3:72663196-72663215 | None:intergenic | 25.0% |
| ! | ACTCTTGATAAATTCCTTAA+GGG | + | chr4.3:72664153-72664172 | None:intergenic | 25.0% |
| ! | AGAAACAAGGTTATCAAAAT+CGG | + | chr4.3:72663226-72663245 | None:intergenic | 25.0% |
| ! | AGTAAGATTCAGAATTTCAT+TGG | + | chr4.3:72664707-72664726 | None:intergenic | 25.0% |
| ! | ATTAAACTTACTTGATGAAG+CGG | + | chr4.3:72663860-72663879 | None:intergenic | 25.0% |
| ! | CAAAAAAGAGAAGGAAAAAA+AGG | - | chr4.3:72662576-72662595 | MS.gene48914:intron | 25.0% |
| ! | CAAAAATACAAAACAACCAT+AGG | + | chr4.3:72662037-72662056 | None:intergenic | 25.0% |
| ! | CTAAAATTCTTTCATTGTGT+AGG | - | chr4.3:72665077-72665096 | MS.gene48914:CDS | 25.0% |
| ! | GAACTTCAAAAAATGTTCAA+AGG | + | chr4.3:72664419-72664438 | None:intergenic | 25.0% |
| ! | GACCCATTCTTTAAATATTA+GGG | + | chr4.3:72663956-72663975 | None:intergenic | 25.0% |
| ! | TACTCTTGATAAATTCCTTA+AGG | + | chr4.3:72664154-72664173 | None:intergenic | 25.0% |
| ! | TGACCCATTCTTTAAATATT+AGG | + | chr4.3:72663957-72663976 | None:intergenic | 25.0% |
| !! | AAAGCATAACTCTTATTTCT+AGG | - | chr4.3:72665043-72665062 | MS.gene48914:intron | 25.0% |
| !! | AACTCAAAAGAAGTGTAAAA+TGG | + | chr4.3:72662520-72662539 | None:intergenic | 25.0% |
| !! | AGTACACATTTTTATTGCAT+CGG | - | chr4.3:72664812-72664831 | MS.gene48914:CDS | 25.0% |
| !! | ATAGGATTTTGCCTTTTTTT+AGG | + | chr4.3:72662745-72662764 | None:intergenic | 25.0% |
| !! | CTACACAATGAAAGAATTTT+AGG | + | chr4.3:72665079-72665098 | None:intergenic | 25.0% |
| !! | GTATTATTTTCTCATTTGTG+GGG | - | chr4.3:72664836-72664855 | MS.gene48914:CDS | 25.0% |
| !! | GTGTATTATTTTCTCATTTG+TGG | - | chr4.3:72664834-72664853 | MS.gene48914:CDS | 25.0% |
| !! | TTTAGGGTATTTATAGAACT+GGG | + | chr4.3:72662910-72662929 | None:intergenic | 25.0% |
| !!! | AAGCATAACTCTTATTTCTA+GGG | - | chr4.3:72665044-72665063 | MS.gene48914:intron | 25.0% |
| !!! | AATGAAATTTTTTGGCCTTT+AGG | + | chr4.3:72662927-72662946 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTTTGGCCTTTA+GGG | + | chr4.3:72662926-72662945 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGTGAGTTTTGAT+AGG | + | chr4.3:72662609-72662628 | None:intergenic | 25.0% |
| !!! | CAACATTTCTTTTTTGACAA+AGG | - | chr4.3:72664174-72664193 | MS.gene48914:intron | 25.0% |
| !!! | TATACAACTATCTTTTGAGT+TGG | - | chr4.3:72662073-72662092 | MS.gene48914:intron | 25.0% |
| !!! | TCCATTTATTTTCTTTCAGT+GGG | - | chr4.3:72664859-72664878 | MS.gene48914:CDS | 25.0% |
| !!! | TTTTCAAGTGAGTTTTGATA+GGG | + | chr4.3:72662608-72662627 | None:intergenic | 25.0% |
| AAAAATAGAGCTGAATCCAT+TGG | - | chr4.3:72663634-72663653 | MS.gene48914:intron | 30.0% | |
| AATTTCTTACGTCTATTAGC+AGG | + | chr4.3:72662271-72662290 | None:intergenic | 30.0% | |
| ATCATCGAATCATTTGGATT+TGG | + | chr4.3:72662202-72662221 | None:intergenic | 30.0% | |
| ATTCTGAATCTTACTCTCTT+AGG | - | chr4.3:72664712-72664731 | MS.gene48914:intron | 30.0% | |
| CAGTTCTATAAATACCCTAA+AGG | - | chr4.3:72662909-72662928 | MS.gene48914:intron | 30.0% | |
| CATAGCAAAGTCCTAAAAAA+AGG | - | chr4.3:72662731-72662750 | MS.gene48914:intron | 30.0% | |
| GAAACAAGGTTATCAAAATC+GGG | + | chr4.3:72663225-72663244 | None:intergenic | 30.0% | |
| GAAGAAAAGCAAAAAAGAGA+AGG | - | chr4.3:72662567-72662586 | MS.gene48914:intron | 30.0% | |
| GTATTTATAGAACTGGGTAA+TGG | + | chr4.3:72662904-72662923 | None:intergenic | 30.0% | |
| TAAAATCGCAATCAAAATCG+AGG | + | chr4.3:72663119-72663138 | None:intergenic | 30.0% | |
| TAAATGTAGATAGCTAGCTA+GGG | + | chr4.3:72664968-72664987 | None:intergenic | 30.0% | |
| TTAGTAGTCACAAAGAATGA+AGG | + | chr4.3:72662971-72662990 | None:intergenic | 30.0% | |
| TTGAAGTACATCAAGAAACA+AGG | + | chr4.3:72663239-72663258 | None:intergenic | 30.0% | |
| TTTCTTGATGTACTTCAAAG+TGG | - | chr4.3:72663241-72663260 | MS.gene48914:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | + | chr4.3:72663183-72663202 | None:intergenic | 30.0% |
| ! | AGTTTTCGGAGTTTGAATTT+TGG | - | chr4.3:72661784-72661803 | MS.gene48914:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | + | chr4.3:72663161-72663180 | None:intergenic | 30.0% |
| ! | TTCATCATCATGTTTGTTGA+AGG | + | chr4.3:72662172-72662191 | None:intergenic | 30.0% |
| ! | TTTTTCACACAAGCAAATGT+AGG | - | chr4.3:72665129-72665148 | MS.gene48914:CDS | 30.0% |
| !! | CGATTTTATGCGATTTTGAT+AGG | + | chr4.3:72662763-72662782 | None:intergenic | 30.0% |
| !! | CTTTAGGGTATTTATAGAAC+TGG | + | chr4.3:72662911-72662930 | None:intergenic | 30.0% |
| !! | GTCCATTTATTTTCTTTCAG+TGG | - | chr4.3:72664858-72664877 | MS.gene48914:CDS | 30.0% |
| !! | GTTAATTTTTGTTGTGCCTA+TGG | - | chr4.3:72662018-72662037 | MS.gene48914:intron | 30.0% |
| !!! | ACTATCTTTTGAGTTGGAAT+TGG | - | chr4.3:72662079-72662098 | MS.gene48914:intron | 30.0% |
| !!! | AGGATTTTGATGGATTTTGA+AGG | - | chr4.3:72662813-72662832 | MS.gene48914:intron | 30.0% |
| !!! | CTTTTTTTAGGACTTTGCTA+TGG | + | chr4.3:72662733-72662752 | None:intergenic | 30.0% |
| !!! | TTTTGAGTTGGAATTGGAAA+TGG | - | chr4.3:72662085-72662104 | MS.gene48914:intron | 30.0% |
| ACAAAGAATGAAGGAAAGTG+TGG | + | chr4.3:72662962-72662981 | None:intergenic | 35.0% | |
| ACACATACCATAAGAGTTTG+AGG | + | chr4.3:72661710-72661729 | None:intergenic | 35.0% | |
| AGAAACCCTATACCAAATCT+AGG | - | chr4.3:72663443-72663462 | MS.gene48914:intron | 35.0% | |
| ATAAGGGTCAATTTATGACC+CGG | - | chr4.3:72662854-72662873 | MS.gene48914:intron | 35.0% | |
| ATAAGTCCGAAATGAATGTG+TGG | + | chr4.3:72664893-72664912 | None:intergenic | 35.0% | |
| CACTTTCCACACATTCATTT+CGG | - | chr4.3:72664884-72664903 | MS.gene48914:CDS | 35.0% | |
| CATACAGCATACATGAGAAA+TGG | + | chr4.3:72662392-72662411 | None:intergenic | 35.0% | |
| CTTCAATCCTCAAACTCTTA+TGG | - | chr4.3:72661700-72661719 | MS.gene48914:intron | 35.0% | |
| GAAACCCTATACCAAATCTA+GGG | - | chr4.3:72663444-72663463 | MS.gene48914:intron | 35.0% | |
| GAAATGAATGTGTGGAAAGT+GGG | + | chr4.3:72664885-72664904 | None:intergenic | 35.0% | |
| GAAGTGTAAAATGGACAGAA+GGG | + | chr4.3:72662511-72662530 | None:intergenic | 35.0% | |
| GCCCACTGAAAGAAAATAAA+TGG | + | chr4.3:72664863-72664882 | None:intergenic | 35.0% | |
| GTAAATGTAGATAGCTAGCT+AGG | + | chr4.3:72664969-72664988 | None:intergenic | 35.0% | |
| GTGTTCATCATCGAATCATT+TGG | + | chr4.3:72662208-72662227 | None:intergenic | 35.0% | |
| TACATGAGAAATGGTGAAGA+AGG | + | chr4.3:72662383-72662402 | None:intergenic | 35.0% | |
| TCGATATAGGATAGCAAAGT+CGG | + | chr4.3:72663148-72663167 | None:intergenic | 35.0% | |
| TTTCATTGTGTAGGATTCAG+AGG | - | chr4.3:72665086-72665105 | MS.gene48914:CDS | 35.0% | |
| ! | AAAGAATGAAGGAAAGTGTG+GGG | + | chr4.3:72662960-72662979 | None:intergenic | 35.0% |
| ! | AGAAGTGTAAAATGGACAGA+AGG | + | chr4.3:72662512-72662531 | None:intergenic | 35.0% |
| ! | AGATTCTTTTGATGCCATCA+TGG | - | chr4.3:72662450-72662469 | MS.gene48914:intron | 35.0% |
| ! | CAAAATCCTGCGATTTTGAA+CGG | + | chr4.3:72662802-72662821 | None:intergenic | 35.0% |
| ! | CAAAGAATGAAGGAAAGTGT+GGG | + | chr4.3:72662961-72662980 | None:intergenic | 35.0% |
| ! | GAAAGAAGAGAGTTCTGATT+AGG | - | chr4.3:72663735-72663754 | MS.gene48914:intron | 35.0% |
| ! | GATTCTTTTGATGCCATCAT+GGG | - | chr4.3:72662451-72662470 | MS.gene48914:intron | 35.0% |
| ! | TCAAAATCGCAGGATTTTGA+TGG | - | chr4.3:72662803-72662822 | MS.gene48914:intron | 35.0% |
| !! | ACGAACATTAGCTTTCTTCA+CGG | + | chr4.3:72664930-72664949 | None:intergenic | 35.0% |
| !! | ACTGGGTAATGGATTCAAAT+CGG | + | chr4.3:72662893-72662912 | None:intergenic | 35.0% |
| !! | TCATTTTTCAGCCCTAGATT+TGG | + | chr4.3:72663458-72663477 | None:intergenic | 35.0% |
| !! | TGGATTCAGCTCTATTTTTC+CGG | + | chr4.3:72663633-72663652 | None:intergenic | 35.0% |
| !!! | CCTTTTTTGGTATGCTTAAC+CGG | + | chr4.3:72664000-72664019 | None:intergenic | 35.0% |
| AAAATGGACAGAAGGGTTTC+AGG | + | chr4.3:72662504-72662523 | None:intergenic | 40.0% | |
| AAAGAATGGGTCATGCTAAC+CGG | - | chr4.3:72663964-72663983 | MS.gene48914:intron | 40.0% | |
| AAAGGAAGTGGATGATGAAG+AGG | + | chr4.3:72661346-72661365 | None:intergenic | 40.0% | |
| AATCGGGTCAATTTACGAAC+CGG | + | chr4.3:72662876-72662895 | None:intergenic | 40.0% | |
| AGATCCAACGTATCAAAGCT+GGG | - | chr4.3:72664626-72664645 | MS.gene48914:intron | 40.0% | |
| AGGACGTGCTTATGAAAGAT+GGG | - | chr4.3:72665106-72665125 | MS.gene48914:CDS | 40.0% | |
| AGTATGTTTAACTAGTGCCC+CGG | - | chr4.3:72664110-72664129 | MS.gene48914:intron | 40.0% | |
| ATGATGAACACAATGAGAGG+AGG | - | chr4.3:72662217-72662236 | MS.gene48914:intron | 40.0% | |
| CAGTGTCACAGAAATTGCAA+TGG | + | chr4.3:72661425-72661444 | None:intergenic | 40.0% | |
| CATGTTAACTGAGAGAAGGT+TGG | + | chr4.3:72661630-72661649 | None:intergenic | 40.0% | |
| CCGGTTAAGCATACCAAAAA+AGG | - | chr4.3:72663997-72664016 | MS.gene48914:intron | 40.0% | |
| CGAAATGAATGTGTGGAAAG+TGG | + | chr4.3:72664886-72664905 | None:intergenic | 40.0% | |
| CGATATAGGATAGCAAAGTC+GGG | + | chr4.3:72663147-72663166 | None:intergenic | 40.0% | |
| CTCTAACAATCACTCTCCAA+TGG | + | chr4.3:72663653-72663672 | None:intergenic | 40.0% | |
| GAAGAAAGCTAATGTTCGTC+AGG | - | chr4.3:72664931-72664950 | MS.gene48914:intron | 40.0% | |
| GATTGAAGTAAGTGTGTCCA+AGG | + | chr4.3:72661688-72661707 | None:intergenic | 40.0% | |
| GTCTTGAACAAACTTGTGCA+AGG | + | chr4.3:72661581-72661600 | None:intergenic | 40.0% | |
| TATTAGCAGGTGGAGGTTTA+GGG | + | chr4.3:72662258-72662277 | None:intergenic | 40.0% | |
| TCACTCAATGTTTGCATGCA+AGG | + | chr4.3:72663595-72663614 | None:intergenic | 40.0% | |
| TCGATGATGAACACAATGAG+AGG | - | chr4.3:72662214-72662233 | MS.gene48914:intron | 40.0% | |
| TGAAATCCGTTCAAAATCGC+AGG | - | chr4.3:72662793-72662812 | MS.gene48914:intron | 40.0% | |
| TGATGAACACAATGAGAGGA+GGG | - | chr4.3:72662218-72662237 | MS.gene48914:intron | 40.0% | |
| TGCAATGGACATAACAAAGC+TGG | + | chr4.3:72661410-72661429 | None:intergenic | 40.0% | |
| TTACTTGATGAAGCGGTTGT+AGG | + | chr4.3:72663853-72663872 | None:intergenic | 40.0% | |
| TTCTTACGTCTATTAGCAGG+TGG | + | chr4.3:72662268-72662287 | None:intergenic | 40.0% | |
| ! | AAGAATGAAGGAAAGTGTGG+GGG | + | chr4.3:72662959-72662978 | None:intergenic | 40.0% |
| ! | AGTCGCAAAAACCAGGATTT+TGG | + | chr4.3:72662686-72662705 | None:intergenic | 40.0% |
| ! | ATCATCCACTTCCTTTTCAC+CGG | - | chr4.3:72661350-72661369 | MS.gene48914:CDS | 40.0% |
| ! | GTCGCAAAAACCAGGATTTT+GGG | + | chr4.3:72662685-72662704 | None:intergenic | 40.0% |
| ! | TCAGCCCTAGATTTGGTATA+GGG | + | chr4.3:72663451-72663470 | None:intergenic | 40.0% |
| ! | TTCAGCCCTAGATTTGGTAT+AGG | + | chr4.3:72663452-72663471 | None:intergenic | 40.0% |
| ! | TTTTCCTACCTTTCCCATGA+TGG | + | chr4.3:72662467-72662486 | None:intergenic | 40.0% |
| ! | TTTTGATGCCATCATGGGAA+AGG | - | chr4.3:72662456-72662475 | MS.gene48914:intron | 40.0% |
| !! | ATTCAGCTCTATTTTTCCGG+GGG | + | chr4.3:72663630-72663649 | None:intergenic | 40.0% |
| !! | CAAGTGAGTTTTGATAGGGA+TGG | + | chr4.3:72662604-72662623 | None:intergenic | 40.0% |
| !! | CGAACATTAGCTTTCTTCAC+GGG | + | chr4.3:72664929-72664948 | None:intergenic | 40.0% |
| !! | CTGGGTAATGGATTCAAATC+GGG | + | chr4.3:72662892-72662911 | None:intergenic | 40.0% |
| !! | GATTCAGCTCTATTTTTCCG+GGG | + | chr4.3:72663631-72663650 | None:intergenic | 40.0% |
| !! | GGATTCAGCTCTATTTTTCC+GGG | + | chr4.3:72663632-72663651 | None:intergenic | 40.0% |
| !!! | GCTGAGACAGTTTTAAGATG+AGG | + | chr4.3:72661811-72661830 | None:intergenic | 40.0% |
| AAGACTGTGACAGTGAGATG+TGG | - | chr4.3:72661596-72661615 | MS.gene48914:CDS | 45.0% | |
| ACAGCAACAACTCTCTCCTT+CGG | - | chr4.3:72661383-72661402 | MS.gene48914:CDS | 45.0% | |
| ACATAACAAAGCTGGTCCGA+AGG | + | chr4.3:72661402-72661421 | None:intergenic | 45.0% | |
| ATCGGGTCAATTTACGAACC+GGG | + | chr4.3:72662875-72662894 | None:intergenic | 45.0% | |
| CACGCATGTTAACTGAGAGA+AGG | + | chr4.3:72661634-72661653 | None:intergenic | 45.0% | |
| CGACTTAAGTCCCAAAATCC+TGG | - | chr4.3:72662672-72662691 | MS.gene48914:intron | 45.0% | |
| CTATTAGCAGGTGGAGGTTT+AGG | + | chr4.3:72662259-72662278 | None:intergenic | 45.0% | |
| GAGATCCAACGTATCAAAGC+TGG | - | chr4.3:72664625-72664644 | MS.gene48914:intron | 45.0% | |
| GAGGACGTGCTTATGAAAGA+TGG | - | chr4.3:72665105-72665124 | MS.gene48914:CDS | 45.0% | |
| GTATGTTTAACTAGTGCCCC+GGG | - | chr4.3:72664111-72664130 | MS.gene48914:intron | 45.0% | |
| TACGCAAAGTCGCAAAAACC+AGG | + | chr4.3:72662693-72662712 | None:intergenic | 45.0% | |
| TCCTGATATAAGCCACAGAG+AGG | - | chr4.3:72664651-72664670 | MS.gene48914:intron | 45.0% | |
| TCCTTAAGGGAAATGCTAGC+CGG | + | chr4.3:72664140-72664159 | None:intergenic | 45.0% | |
| TGTCCAAGGTGAAGCTGATT+AGG | + | chr4.3:72661674-72661693 | None:intergenic | 45.0% | |
| TTACGTCTATTAGCAGGTGG+AGG | + | chr4.3:72662265-72662284 | None:intergenic | 45.0% | |
| TTTCTGTGACACTGTTCTCG+CGG | - | chr4.3:72661431-72661450 | MS.gene48914:intron | 45.0% | |
| ! | AGAGTTGTTGCTGTTGTTGC+TGG | + | chr4.3:72661377-72661396 | None:intergenic | 45.0% |
| ! | GATTCCCAGCTTTGATACGT+TGG | + | chr4.3:72664633-72664652 | None:intergenic | 45.0% |
| !! | TTCTTCACGGGTTGATGATC+AGG | + | chr4.3:72664917-72664936 | None:intergenic | 45.0% |
| !!! | AGTATTTTTTTTAATTAATT+TGG | + | chr4.3:72663354-72663373 | None:intergenic | 5.0% |
| !!! | ATAAACATTTTTTATTTTTA+TGG | - | chr4.3:72664215-72664234 | MS.gene48914:intron | 5.0% |
| !!! | ATTATTTTTTTTACTAAAAA+TGG | - | chr4.3:72664384-72664403 | MS.gene48914:intron | 5.0% |
| !!! | TAAACATTTTTTTTTTATTA+CGG | - | chr4.3:72664451-72664470 | MS.gene48914:intron | 5.0% |
| !!! | TATTTTTTTTTTACTAAAAA+TGG | - | chr4.3:72664350-72664369 | MS.gene48914:intron | 5.0% |
| ACCGGCTAGCATTTCCCTTA+AGG | - | chr4.3:72664136-72664155 | MS.gene48914:intron | 50.0% | |
| AGGTGAAGCTGATTAGGAGC+AGG | + | chr4.3:72661668-72661687 | None:intergenic | 50.0% | |
| ATGAAGCGGTTGTAGGCAGA+TGG | + | chr4.3:72663846-72663865 | None:intergenic | 50.0% | |
| CAAACACACGGACATTGCTC+AGG | + | chr4.3:72663791-72663810 | None:intergenic | 50.0% | |
| CATTGCTCAGGCAAACAGAC+AGG | + | chr4.3:72663779-72663798 | None:intergenic | 50.0% | |
| CTGCACTAAAAGCCTCTCTG+TGG | + | chr4.3:72664666-72664685 | None:intergenic | 50.0% | |
| GAAGCTGATTAGGAGCAGGA+AGG | + | chr4.3:72661664-72661683 | None:intergenic | 50.0% | |
| GAGCTGGACAAGCAAACACA+CGG | + | chr4.3:72663803-72663822 | None:intergenic | 50.0% | |
| GATGCCATCATGGGAAAGGT+AGG | - | chr4.3:72662460-72662479 | MS.gene48914:intron | 50.0% | |
| GCCTCTCTGTGGCTTATATC+AGG | + | chr4.3:72664655-72664674 | None:intergenic | 50.0% | |
| GCTCCTAATCAGCTTCACCT+TGG | - | chr4.3:72661668-72661687 | MS.gene48914:intron | 50.0% | |
| GGAACTCTCTGTCTCTTCTC+CGG | + | chr4.3:72663825-72663844 | None:intergenic | 50.0% | |
| GTGAGACAGAATTCTTCCCC+CGG | - | chr4.3:72663611-72663630 | MS.gene48914:intron | 50.0% | |
| TGTGTTTGCTTGTCCAGCTC+CGG | - | chr4.3:72663803-72663822 | MS.gene48914:intron | 50.0% | |
| TTGTTGCTGGTCCGGTGAAA+AGG | + | chr4.3:72661364-72661383 | None:intergenic | 50.0% | |
| ! | TGTTGCTGTTGTTGCTGGTC+CGG | + | chr4.3:72661372-72661391 | None:intergenic | 50.0% |
| CTGGTCCGGTGAAAAGGAAG+TGG | + | chr4.3:72661358-72661377 | None:intergenic | 55.0% | |
| GGGTCATGCTAACCGGTGTT+CGG | - | chr4.3:72663971-72663990 | MS.gene48914:intron | 55.0% | |
| GGTCATGCTAACCGGTGTTC+GGG | - | chr4.3:72663972-72663991 | MS.gene48914:intron | 55.0% | |
| AAATGCTAGCCGGTGTCCCG+GGG | + | chr4.3:72664130-72664149 | None:intergenic | 60.0% | |
| CTCTGTCTCTTCTCCGGAGC+TGG | + | chr4.3:72663819-72663838 | None:intergenic | 60.0% | |
| CTTAACCGGTGCCCGAACAC+CGG | + | chr4.3:72663986-72664005 | None:intergenic | 60.0% | |
| GAAATGCTAGCCGGTGTCCC+GGG | + | chr4.3:72664131-72664150 | None:intergenic | 60.0% | |
| GGAAATGCTAGCCGGTGTCC+CGG | + | chr4.3:72664132-72664151 | None:intergenic | 60.0% | |
| TAACTAGTGCCCCGGGACAC+CGG | - | chr4.3:72664118-72664137 | MS.gene48914:intron | 60.0% | |
| GCTAACCGGTGTTCGGGCAC+CGG | - | chr4.3:72663978-72663997 | MS.gene48914:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 72661339 | 72665167 | 72661339 | ID=MS.gene48914 |
| chr4.3 | mRNA | 72661339 | 72665167 | 72661339 | ID=MS.gene48914.t1;Parent=MS.gene48914 |
| chr4.3 | exon | 72665054 | 72665167 | 72665054 | ID=MS.gene48914.t1.exon1;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72665054 | 72665167 | 72665054 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| chr4.3 | exon | 72664785 | 72664937 | 72664785 | ID=MS.gene48914.t1.exon2;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72664785 | 72664937 | 72664785 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| chr4.3 | exon | 72664226 | 72664355 | 72664226 | ID=MS.gene48914.t1.exon3;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72664226 | 72664355 | 72664226 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| chr4.3 | exon | 72662638 | 72662686 | 72662638 | ID=MS.gene48914.t1.exon4;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72662638 | 72662686 | 72662638 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| chr4.3 | exon | 72661810 | 72661885 | 72661810 | ID=MS.gene48914.t1.exon5;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72661810 | 72661885 | 72661810 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| chr4.3 | exon | 72661554 | 72661628 | 72661554 | ID=MS.gene48914.t1.exon6;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72661554 | 72661628 | 72661554 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| chr4.3 | exon | 72661339 | 72661407 | 72661339 | ID=MS.gene48914.t1.exon7;Parent=MS.gene48914.t1 |
| chr4.3 | CDS | 72661339 | 72661407 | 72661339 | ID=cds.MS.gene48914.t1;Parent=MS.gene48914.t1 |
| Gene Sequence |
| Protein sequence |
