Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48257.t1 | XP_013455085.1 | 99.5 | 203 | 1 | 0 | 19 | 221 | 19 | 221 | 2.40E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48257.t1 | O22152 | 71.1 | 211 | 51 | 6 | 20 | 221 | 20 | 229 | 3.1e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48257.t1 | A0A072UJ49 | 99.5 | 203 | 1 | 0 | 19 | 221 | 19 | 221 | 1.7e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48257.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene48257 | 0.820954 | 5.22E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene48257 | 0.832486 | 9.20E-56 | -1.69E-46 |
| MS.gene051471 | MS.gene48257 | 0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene051789 | MS.gene48257 | 0.827551 | 1.47E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene48257 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene48257 | 0.845755 | 3.33E-59 | -1.69E-46 |
| MS.gene053836 | MS.gene48257 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene054214 | MS.gene48257 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene48257 | 0.806704 | 7.23E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene48257 | 0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene48257 | 0.829085 | 6.27E-55 | -1.69E-46 |
| MS.gene056629 | MS.gene48257 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene48257 | 0.835831 | 1.33E-56 | -1.69E-46 |
| MS.gene059228 | MS.gene48257 | 0.980703 | 7.79E-151 | -1.69E-46 |
| MS.gene059894 | MS.gene48257 | 0.80108 | 1.07E-48 | -1.69E-46 |
| MS.gene060005 | MS.gene48257 | 0.845632 | 3.60E-59 | -1.69E-46 |
| MS.gene06037 | MS.gene48257 | 0.849575 | 2.96E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene48257 | 0.819604 | 1.06E-52 | -1.69E-46 |
| MS.gene061112 | MS.gene48257 | 0.841248 | 5.33E-58 | -1.69E-46 |
| MS.gene061265 | MS.gene48257 | 0.837937 | 3.87E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08601 | MS.gene48257 | PPI |
| MS.gene39530 | MS.gene48257 | PPI |
| MS.gene002513 | MS.gene48257 | PPI |
| MS.gene062560 | MS.gene48257 | PPI |
| MS.gene26397 | MS.gene48257 | PPI |
| MS.gene047370 | MS.gene48257 | PPI |
| MS.gene47580 | MS.gene48257 | PPI |
| MS.gene028744 | MS.gene48257 | PPI |
| MS.gene007633 | MS.gene48257 | PPI |
| MS.gene043573 | MS.gene48257 | PPI |
| MS.gene004184 | MS.gene48257 | PPI |
| MS.gene31320 | MS.gene48257 | PPI |
| MS.gene08711 | MS.gene48257 | PPI |
| MS.gene01487 | MS.gene48257 | PPI |
| MS.gene42837 | MS.gene48257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48257.t1 | MTR_4g025900 | 99.548 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 1.23e-168 | 463 |
| MS.gene48257.t1 | MTR_4g101660 | 71.770 | 209 | 51 | 6 | 18 | 221 | 13 | 218 | 1.92e-93 | 273 |
| MS.gene48257.t1 | MTR_4g114730 | 53.368 | 193 | 64 | 4 | 20 | 206 | 11 | 183 | 4.61e-60 | 187 |
| MS.gene48257.t1 | MTR_2g087740 | 52.041 | 196 | 83 | 5 | 19 | 211 | 8 | 195 | 5.10e-57 | 179 |
| MS.gene48257.t1 | MTR_4g050300 | 55.215 | 163 | 62 | 3 | 22 | 184 | 8 | 159 | 5.34e-51 | 163 |
| MS.gene48257.t1 | MTR_5g034030 | 50.000 | 158 | 71 | 2 | 23 | 179 | 12 | 162 | 6.29e-46 | 152 |
| MS.gene48257.t1 | MTR_5g046230 | 47.500 | 160 | 64 | 5 | 21 | 178 | 14 | 155 | 8.92e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48257.t1 | AT2G45190 | 67.431 | 218 | 49 | 6 | 19 | 221 | 19 | 229 | 1.39e-96 | 281 |
| MS.gene48257.t1 | AT4G00180 | 62.661 | 233 | 59 | 10 | 8 | 219 | 13 | 238 | 9.26e-81 | 241 |
| MS.gene48257.t1 | AT4G00180 | 61.722 | 209 | 57 | 9 | 32 | 219 | 1 | 207 | 4.26e-68 | 208 |
| MS.gene48257.t1 | AT2G45190 | 63.372 | 172 | 41 | 6 | 65 | 221 | 1 | 165 | 7.02e-66 | 201 |
| MS.gene48257.t1 | AT2G26580 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 1.68e-56 | 177 |
| MS.gene48257.t1 | AT2G26580 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 1.68e-56 | 177 |
| MS.gene48257.t1 | AT1G08465 | 56.322 | 174 | 52 | 5 | 22 | 188 | 7 | 163 | 1.37e-55 | 175 |
| MS.gene48257.t1 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 20 | 180 | 7.90e-40 | 137 |
| MS.gene48257.t1 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 51 | 211 | 4.31e-39 | 135 |
| MS.gene48257.t1 | AT1G69180 | 39.490 | 157 | 77 | 2 | 22 | 178 | 18 | 156 | 9.57e-31 | 112 |
Find 55 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTAGCAGGTGGAGGTTT+TGG | 0.224903 | 4.2:+77301697 | None:intergenic |
| ATCATCAAATCATTTGGATT+TGG | 0.277959 | 4.2:+77301754 | None:intergenic |
| CACTTTCCACACATTCATTT+CGG | 0.297543 | 4.2:-77299144 | MS.gene48257:CDS |
| CTTCAACCCTCAAACTCTTA+TGG | 0.305185 | 4.2:-77302185 | MS.gene48257:intron |
| AGAGTTGTTGCTGTTGTTGC+TGG | 0.315337 | 4.2:+77302505 | None:intergenic |
| GCCTCTCTGTGGCTTATATC+AGG | 0.334060 | 4.2:+77299376 | None:intergenic |
| TTCTTCACGGGTTGATGATC+AGG | 0.349751 | 4.2:+77299114 | None:intergenic |
| AACAAACACACTTCTTTAGT+AGG | 0.360387 | 4.2:+77298863 | None:intergenic |
| GTGTTCATCATCAAATCATT+TGG | 0.376681 | 4.2:+77301748 | None:intergenic |
| TTACTTGATGAAGCGGTTGT+AGG | 0.396976 | 4.2:+77300681 | None:intergenic |
| TGTCCAAGGTGAAGTTGATT+TGG | 0.407277 | 4.2:+77302214 | None:intergenic |
| TGTTGCTGTTGTTGCTGGTC+CGG | 0.423782 | 4.2:+77302510 | None:intergenic |
| GAGGACGTGCTTATGAAAGA+TGG | 0.432558 | 4.2:-77298918 | MS.gene48257:CDS |
| TTCATCATCATGTTTGTTGA+AGG | 0.455442 | 4.2:+77301784 | None:intergenic |
| AATTTCTTACGTCTATTAGC+AGG | 0.457462 | 4.2:+77301685 | None:intergenic |
| GAGATCCAACGTATCAAAGC+TGG | 0.478771 | 4.2:-77299403 | MS.gene48257:CDS |
| GAAGAAAGCTAATGTTCGTC+AGG | 0.494623 | 4.2:-77299097 | MS.gene48257:intron |
| CGAACATTAGCTTTCTTCAC+GGG | 0.494923 | 4.2:+77299102 | None:intergenic |
| ACAAACACACTTCTTTAGTA+GGG | 0.496640 | 4.2:+77298864 | None:intergenic |
| GGAACTCTCTGTCTCTTCTC+CGG | 0.501243 | 4.2:+77300709 | None:intergenic |
| CGAAATGAATGTGTGGAAAG+TGG | 0.502844 | 4.2:+77299145 | None:intergenic |
| ACACATACCATAAGAGTTTG+AGG | 0.506984 | 4.2:+77302178 | None:intergenic |
| TTGTTGCTGGTCCGGTGAAA+AGG | 0.508490 | 4.2:+77302518 | None:intergenic |
| CACATACCATAAGAGTTTGA+GGG | 0.516195 | 4.2:+77302179 | None:intergenic |
| AGGTGAAGTTGATTTGGAGC+AGG | 0.517398 | 4.2:+77302220 | None:intergenic |
| ACAGCAACAACTCTCTCCTT+CGG | 0.518591 | 4.2:-77302496 | MS.gene48257:CDS |
| TGCAATGGACATAACAAAGC+TGG | 0.526911 | 4.2:+77302472 | None:intergenic |
| ATTAAACTTACTTGATGAAG+CGG | 0.531165 | 4.2:+77300674 | None:intergenic |
| ACGAACATTAGCTTTCTTCA+CGG | 0.533864 | 4.2:+77299101 | None:intergenic |
| TTACGTCTATTAGCAGGTGG+AGG | 0.545636 | 4.2:+77301691 | None:intergenic |
| CTGGTCCGGTGAAAAGGAAG+TGG | 0.549720 | 4.2:+77302524 | None:intergenic |
| AGGACGTGCTTATGAAAGAT+GGG | 0.553995 | 4.2:-77298917 | MS.gene48257:CDS |
| TTTCATTGTGTAGGATTCAG+AGG | 0.560695 | 4.2:-77298937 | MS.gene48257:intron |
| ATGAAGCGGTTGTAGGCAGA+TGG | 0.560728 | 4.2:+77300688 | None:intergenic |
| TTCTTACGTCTATTAGCAGG+TGG | 0.566691 | 4.2:+77301688 | None:intergenic |
| GATTCCCAGCTTTGATACGT+TGG | 0.580008 | 4.2:+77299398 | None:intergenic |
| GAAGTTGATTTGGAGCAGGA+AGG | 0.583401 | 4.2:+77302224 | None:intergenic |
| AAAGGAAGTGGATGATGAAG+AGG | 0.587043 | 4.2:+77302536 | None:intergenic |
| GCTCCAAATCAACTTCACCT+TGG | 0.591195 | 4.2:-77302217 | MS.gene48257:CDS |
| AGATCCAACGTATCAAAGCT+GGG | 0.600203 | 4.2:-77299402 | MS.gene48257:CDS |
| GAAATGAATGTGTGGAAAGT+GGG | 0.615090 | 4.2:+77299146 | None:intergenic |
| ATGATGAACACAATGAGAGG+AGG | 0.619560 | 4.2:-77301736 | MS.gene48257:CDS |
| CACGCATGTTAACTGAGAGA+AGG | 0.621310 | 4.2:+77302254 | None:intergenic |
| CATGTTAACTGAGAGAAGGT+TGG | 0.622869 | 4.2:+77302258 | None:intergenic |
| TGATGAACACAATGAGAGGA+GGG | 0.625320 | 4.2:-77301735 | MS.gene48257:CDS |
| ACATAACAAAGCTGGTCCGA+AGG | 0.642303 | 4.2:+77302480 | None:intergenic |
| GGTTGAAGTAAGTGTGTCCA+AGG | 0.648511 | 4.2:+77302200 | None:intergenic |
| GTCTTGAACAAACTTGTGCA+AGG | 0.649953 | 4.2:+77302307 | None:intergenic |
| CAGTGTCACAGAAATTGCAA+TGG | 0.650774 | 4.2:+77302457 | None:intergenic |
| TTTCTGTGACACTGTTCTCG+CGG | 0.670363 | 4.2:-77302448 | MS.gene48257:intron |
| CTGCACTAAAAGCCTCTCTG+TGG | 0.673003 | 4.2:+77299365 | None:intergenic |
| AAGACTGTGACAGTGAGATG+TGG | 0.685505 | 4.2:-77302289 | MS.gene48257:CDS |
| TTGATGATGAACACAATGAG+AGG | 0.686722 | 4.2:-77301739 | MS.gene48257:CDS |
| TCCTGATATAAGCCACAGAG+AGG | 0.691291 | 4.2:-77299377 | MS.gene48257:CDS |
| ATAAGTCCGAAATGAATGTG+TGG | 0.723401 | 4.2:+77299138 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAATTTTTAT+TGG | - | chr4.2:77302166-77302185 | MS.gene48257:intron | 0.0% |
| !!! | TATAATTTTTAATTTTTATT+GGG | - | chr4.2:77302167-77302186 | MS.gene48257:intron | 0.0% |
| !! | AAATTGAAAATAATCTAAAA+TGG | + | chr4.2:77302137-77302156 | None:intergenic | 10.0% |
| !! | AATCTTAACTATTAATTAAA+AGG | + | chr4.2:77299047-77299066 | None:intergenic | 10.0% |
| !! | ATCTTAACTATTAATTAAAA+GGG | + | chr4.2:77299046-77299065 | None:intergenic | 10.0% |
| !!! | AAATCTATTTAAACTTTTTT+AGG | - | chr4.2:77300415-77300434 | MS.gene48257:intron | 10.0% |
| !!! | AATTGAAAATAATCTAAAAT+GGG | + | chr4.2:77302136-77302155 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | + | chr4.2:77301466-77301485 | None:intergenic | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr4.2:77301418-77301437 | MS.gene48257:intron | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr4.2:77301417-77301436 | MS.gene48257:intron | 10.0% |
| !!! | TTTTTTATTTTGTTTTTCTT+AGG | - | chr4.2:77299080-77299099 | MS.gene48257:intron | 10.0% |
| !! | AAGAAAAATAAATTCATAAG+TGG | + | chr4.2:77301869-77301888 | None:intergenic | 15.0% |
| !! | AATCAAATCATAATTTATCA+AGG | + | chr4.2:77301986-77302005 | None:intergenic | 15.0% |
| !! | AGGAAATTATTATCATAAAA+AGG | - | chr4.2:77300904-77300923 | MS.gene48257:intron | 15.0% |
| !! | ATCAATTTATGAAATTATCT+AGG | - | chr4.2:77299443-77299462 | MS.gene48257:intron | 15.0% |
| !! | CTCTAATTTGAAAATAATAT+TGG | + | chr4.2:77300258-77300277 | None:intergenic | 15.0% |
| !! | GGTTTAATTAATTATTATTC+AGG | - | chr4.2:77299594-77299613 | MS.gene48257:intron | 15.0% |
| !! | TACTTCAAAATATTTACTAA+AGG | - | chr4.2:77300374-77300393 | MS.gene48257:intron | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr4.2:77301133-77301152 | None:intergenic | 15.0% |
| !! | TTAATTAATTATTATTCAGG+AGG | - | chr4.2:77299597-77299616 | MS.gene48257:intron | 15.0% |
| !! | TTGAAGATTTGTAAATTTAA+TGG | - | chr4.2:77299396-77299415 | MS.gene48257:CDS | 15.0% |
| !!! | AAATTATGATTTGATTTTCA+GGG | - | chr4.2:77301990-77302009 | MS.gene48257:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr4.2:77301494-77301513 | MS.gene48257:intron | 15.0% |
| !!! | ATGATAATAATTTCCTTTTT+TGG | + | chr4.2:77300900-77300919 | None:intergenic | 15.0% |
| !!! | CATTCATTTTAAGTTATTTA+TGG | - | chr4.2:77300769-77300788 | MS.gene48257:intron | 15.0% |
| !!! | TAAATTATGATTTGATTTTC+AGG | - | chr4.2:77301989-77302008 | MS.gene48257:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr4.2:77301532-77301551 | None:intergenic | 15.0% |
| !!! | TGTAAATTTAATGGATTATT+TGG | - | chr4.2:77299405-77299424 | MS.gene48257:CDS | 15.0% |
| !!! | TTTTTTACTAAAAATGGTAT+GGG | - | chr4.2:77301747-77301766 | MS.gene48257:CDS | 15.0% |
| !!! | TTTTTTGATAAAGAAAATGT+TGG | + | chr4.2:77300293-77300312 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTAAAAATGGTA+TGG | - | chr4.2:77301746-77301765 | MS.gene48257:CDS | 15.0% |
| !! | AAAGAAAATGTTGGAAATTA+GGG | + | chr4.2:77300284-77300303 | None:intergenic | 20.0% |
| !! | AGAGAAAAATTATAATGATG+AGG | - | chr4.2:77300558-77300577 | MS.gene48257:intron | 20.0% |
| !! | ATACCCTAATATTTAAAGAA+TGG | - | chr4.2:77300837-77300856 | MS.gene48257:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | - | chr4.2:77301106-77301125 | MS.gene48257:intron | 20.0% |
| !! | TAAAGAAAATGTTGGAAATT+AGG | + | chr4.2:77300285-77300304 | None:intergenic | 20.0% |
| !! | TACCCTAATATTTAAAGAAT+GGG | - | chr4.2:77300838-77300857 | MS.gene48257:intron | 20.0% |
| !!! | ATATATATATGTAGTTTGCT+TGG | + | chr4.2:77299364-77299383 | None:intergenic | 20.0% |
| !!! | ATTTTTGTATTCTGGAAATT+AGG | - | chr4.2:77299515-77299534 | MS.gene48257:intron | 20.0% |
| !!! | GATAATTCATTTAACTTTAG+TGG | - | chr4.2:77301906-77301925 | MS.gene48257:intron | 20.0% |
| !!! | TCTTTTTTTTTTCTTCCTTT+TGG | - | chr4.2:77302399-77302418 | MS.gene48257:intron | 20.0% |
| !!! | TGTATTATTTTCTCATTTGT+GGG | - | chr4.2:77302225-77302244 | MS.gene48257:CDS | 20.0% |
| !!! | TGTTTTGTATTTTTGTATTC+TGG | - | chr4.2:77299507-77299526 | MS.gene48257:intron | 20.0% |
| !!! | TTTTGCTTTTCTTCATTAAT+TGG | + | chr4.2:77300038-77300057 | None:intergenic | 20.0% |
| ! | ACTCTTGATAAATTCCTTAA+GGG | + | chr4.2:77301042-77301061 | None:intergenic | 25.0% |
| ! | ACTGGTTAAACATACTAAAA+AGG | + | chr4.2:77300995-77301014 | None:intergenic | 25.0% |
| ! | AGTAAGATTCAGAATTTCAT+TGG | + | chr4.2:77302097-77302116 | None:intergenic | 25.0% |
| ! | ATCATCAAATCATTTGGATT+TGG | + | chr4.2:77299667-77299686 | None:intergenic | 25.0% |
| ! | ATTAAACTTACTTGATGAAG+CGG | + | chr4.2:77300747-77300766 | None:intergenic | 25.0% |
| ! | CAAAAAAGAGAAGGAAAAAA+AGG | - | chr4.2:77300053-77300072 | MS.gene48257:intron | 25.0% |
| ! | CAAAAATACAAAACAACCAT+AGG | + | chr4.2:77299502-77299521 | None:intergenic | 25.0% |
| ! | CTAAAATTCTTTCATTGTGT+AGG | - | chr4.2:77302472-77302491 | MS.gene48257:CDS | 25.0% |
| ! | GAACTTCAAAAAATGTTCAA+AGG | + | chr4.2:77301809-77301828 | None:intergenic | 25.0% |
| ! | GACCCATTCTTTAAATATTA+GGG | + | chr4.2:77300843-77300862 | None:intergenic | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | - | chr4.2:77301111-77301130 | MS.gene48257:intron | 25.0% |
| ! | TACTCTTGATAAATTCCTTA+AGG | + | chr4.2:77301043-77301062 | None:intergenic | 25.0% |
| ! | TGACCCATTCTTTAAATATT+AGG | + | chr4.2:77300844-77300863 | None:intergenic | 25.0% |
| !! | AAAGCATAACTCTTATTTCT+AGG | - | chr4.2:77302438-77302457 | MS.gene48257:intron | 25.0% |
| !! | AACTCAAAAGAAGTGTAAAA+TGG | + | chr4.2:77299997-77300016 | None:intergenic | 25.0% |
| !! | AGTACACATTTTTATTGCAT+CGG | - | chr4.2:77302202-77302221 | MS.gene48257:CDS | 25.0% |
| !! | CTACACAATGAAAGAATTTT+AGG | + | chr4.2:77302474-77302493 | None:intergenic | 25.0% |
| !! | GTATTATTTTCTCATTTGTG+GGG | - | chr4.2:77302226-77302245 | MS.gene48257:CDS | 25.0% |
| !! | GTGTATTATTTTCTCATTTG+TGG | - | chr4.2:77302224-77302243 | MS.gene48257:CDS | 25.0% |
| !! | TTTGCTGATTATGAGAAATT+TGG | - | chr4.2:77299573-77299592 | MS.gene48257:intron | 25.0% |
| !!! | AAGCATAACTCTTATTTCTA+GGG | - | chr4.2:77302439-77302458 | MS.gene48257:intron | 25.0% |
| !!! | ATTTTCAAGTGAGTTTTGAT+AGG | + | chr4.2:77300086-77300105 | None:intergenic | 25.0% |
| !!! | CAACATTTCTTTTTTGACAA+AGG | - | chr4.2:77301063-77301082 | MS.gene48257:intron | 25.0% |
| !!! | TACTAATTTGCCTTTTTGTT+TGG | + | chr4.2:77301226-77301245 | None:intergenic | 25.0% |
| !!! | TATACAACTATCTTTTGAGT+TGG | - | chr4.2:77299538-77299557 | MS.gene48257:intron | 25.0% |
| !!! | TCCATTTATTTTCTTTCAGT+GGG | - | chr4.2:77302249-77302268 | MS.gene48257:CDS | 25.0% |
| !!! | TTTTCAAGTGAGTTTTGATA+GGG | + | chr4.2:77300085-77300104 | None:intergenic | 25.0% |
| AAAAATAGAGCTGAATCCAT+TGG | - | chr4.2:77300521-77300540 | MS.gene48257:intron | 30.0% | |
| AATTTCTTACGTCTATTAGC+AGG | + | chr4.2:77299736-77299755 | None:intergenic | 30.0% | |
| ACTGTACATACCAAACAAAA+AGG | - | chr4.2:77301213-77301232 | MS.gene48257:intron | 30.0% | |
| ATTCTGAATCTTACTCTCTT+AGG | - | chr4.2:77302102-77302121 | MS.gene48257:intron | 30.0% | |
| GAAGAAAAGCAAAAAAGAGA+AGG | - | chr4.2:77300044-77300063 | MS.gene48257:intron | 30.0% | |
| GTAGAGTAAATGTAAACAAG+AGG | - | chr4.2:77301344-77301363 | MS.gene48257:intron | 30.0% | |
| GTGTTCATCATCAAATCATT+TGG | + | chr4.2:77299673-77299692 | None:intergenic | 30.0% | |
| TAAATGTAGATAGCTAGCTA+GGG | + | chr4.2:77302358-77302377 | None:intergenic | 30.0% | |
| TTGGGACCGAAAATTATAAA+GGG | - | chr4.2:77301436-77301455 | MS.gene48257:intron | 30.0% | |
| TTTCTTGATGTACTTCAAAG+TGG | - | chr4.2:77300117-77300136 | MS.gene48257:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr4.2:77301445-77301464 | None:intergenic | 30.0% |
| ! | GTTTATAAAGAGAAAGTGTG+AGG | + | chr4.2:77299009-77299028 | None:intergenic | 30.0% |
| ! | TTCATCATCATGTTTGTTGA+AGG | + | chr4.2:77299637-77299656 | None:intergenic | 30.0% |
| ! | TTTTTCACACAAGCAAATGT+AGG | - | chr4.2:77302524-77302543 | MS.gene48257:CDS | 30.0% |
| !! | GTCCATTTATTTTCTTTCAG+TGG | - | chr4.2:77302248-77302267 | MS.gene48257:CDS | 30.0% |
| !! | GTTAATTTTTGTTGTGCCTA+TGG | - | chr4.2:77299483-77299502 | MS.gene48257:intron | 30.0% |
| !!! | ACTATCTTTTGAGTTGGAAT+TGG | - | chr4.2:77299544-77299563 | MS.gene48257:intron | 30.0% |
| !!! | TTTTGAGTTGGAATTGGAAA+GGG | - | chr4.2:77299550-77299569 | MS.gene48257:intron | 30.0% |
| ACACATACCATAAGAGTTTG+AGG | + | chr4.2:77299243-77299262 | None:intergenic | 35.0% | |
| ACATGAGAAATGGTGAAGAA+GGG | + | chr4.2:77299860-77299879 | None:intergenic | 35.0% | |
| AGCATAGCATACATGAGAAA+TGG | + | chr4.2:77299870-77299889 | None:intergenic | 35.0% | |
| AGTTGTCAGAGTTTGAATCT+CGG | - | chr4.2:77299311-77299330 | MS.gene48257:intron | 35.0% | |
| ATAAGTCCGAAATGAATGTG+TGG | + | chr4.2:77302283-77302302 | None:intergenic | 35.0% | |
| CACATACCATAAGAGTTTGA+GGG | + | chr4.2:77299242-77299261 | None:intergenic | 35.0% | |
| CACTTTCCACACATTCATTT+CGG | - | chr4.2:77302274-77302293 | MS.gene48257:CDS | 35.0% | |
| CTAATTTACTTTGAGTCCCA+AGG | + | chr4.2:77301278-77301297 | None:intergenic | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | - | chr4.2:77301435-77301454 | MS.gene48257:intron | 35.0% | |
| GAAATGAATGTGTGGAAAGT+GGG | + | chr4.2:77302275-77302294 | None:intergenic | 35.0% | |
| GAAGTGTAAAATGGACAGAA+GGG | + | chr4.2:77299988-77300007 | None:intergenic | 35.0% | |
| GCCCACTGAAAGAAAATAAA+TGG | + | chr4.2:77302253-77302272 | None:intergenic | 35.0% | |
| GTAAATGTAGATAGCTAGCT+AGG | + | chr4.2:77302359-77302378 | None:intergenic | 35.0% | |
| TACATGAGAAATGGTGAAGA+AGG | + | chr4.2:77299861-77299880 | None:intergenic | 35.0% | |
| TCATTTAATGTGCTGCCAAA+AGG | + | chr4.2:77302417-77302436 | None:intergenic | 35.0% | |
| TTTCATTGTGTAGGATTCAG+AGG | - | chr4.2:77302481-77302500 | MS.gene48257:CDS | 35.0% | |
| ! | ACTACTGTGTTGATATGCAT+TGG | - | chr4.2:77301300-77301319 | MS.gene48257:intron | 35.0% |
| ! | AGAAGTGTAAAATGGACAGA+AGG | + | chr4.2:77299989-77300008 | None:intergenic | 35.0% |
| ! | GAAAGAAGAGAGTTCTGATT+AGG | - | chr4.2:77300622-77300641 | MS.gene48257:intron | 35.0% |
| ! | TTTTCCTACCTTTCTCATGA+TGG | + | chr4.2:77299944-77299963 | None:intergenic | 35.0% |
| ! | TTTTGATGCCATCATGAGAA+AGG | - | chr4.2:77299933-77299952 | MS.gene48257:intron | 35.0% |
| !! | ACGAACATTAGCTTTCTTCA+CGG | + | chr4.2:77302320-77302339 | None:intergenic | 35.0% |
| !! | TCATTTTTCAGCCCTAGATT+TGG | + | chr4.2:77300339-77300358 | None:intergenic | 35.0% |
| !! | TGGATTCAGCTCTATTTTTC+CGG | + | chr4.2:77300520-77300539 | None:intergenic | 35.0% |
| !! | TTGATGATGAACACAATGAG+AGG | - | chr4.2:77299679-77299698 | MS.gene48257:intron | 35.0% |
| !!! | CCTTTTTTGGTATGCTTAAC+CGG | + | chr4.2:77300887-77300906 | None:intergenic | 35.0% |
| !!! | CTTTTGAGTTGGAATTGGAA+AGG | - | chr4.2:77299549-77299568 | MS.gene48257:intron | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr4.2:77301504-77301523 | MS.gene48257:intron | 35.0% |
| AAAATGGACAGAAGGGTTTC+AGG | + | chr4.2:77299981-77300000 | None:intergenic | 40.0% | |
| AAAGAATGGGTCATGCTAAC+CGG | - | chr4.2:77300851-77300870 | MS.gene48257:intron | 40.0% | |
| AAAGGAAGTGGATGATGAAG+AGG | + | chr4.2:77298885-77298904 | None:intergenic | 40.0% | |
| AATTACGTTGCAACGAACCT+TGG | - | chr4.2:77301258-77301277 | MS.gene48257:intron | 40.0% | |
| AGAAGCCGTATACCAAATCT+AGG | - | chr4.2:77300324-77300343 | MS.gene48257:intron | 40.0% | |
| AGATCCAACGTATCAAAGCT+GGG | - | chr4.2:77302016-77302035 | MS.gene48257:intron | 40.0% | |
| AGGACGTGCTTATGAAAGAT+GGG | - | chr4.2:77302501-77302520 | MS.gene48257:CDS | 40.0% | |
| ATGATGAACACAATGAGAGG+AGG | - | chr4.2:77299682-77299701 | MS.gene48257:intron | 40.0% | |
| ATTACGTTGCAACGAACCTT+GGG | - | chr4.2:77301259-77301278 | MS.gene48257:intron | 40.0% | |
| CAGTGTCACAGAAATTGCAA+TGG | + | chr4.2:77298964-77298983 | None:intergenic | 40.0% | |
| CATGTTAACTGAGAGAAGGT+TGG | + | chr4.2:77299163-77299182 | None:intergenic | 40.0% | |
| CCGGTTAAGCATACCAAAAA+AGG | - | chr4.2:77300884-77300903 | MS.gene48257:intron | 40.0% | |
| CGAAATGAATGTGTGGAAAG+TGG | + | chr4.2:77302276-77302295 | None:intergenic | 40.0% | |
| CTCTAACAATCACTCTCCAA+TGG | + | chr4.2:77300540-77300559 | None:intergenic | 40.0% | |
| CTTCAACCCTCAAACTCTTA+TGG | - | chr4.2:77299233-77299252 | MS.gene48257:intron | 40.0% | |
| GAAGAAAGCTAATGTTCGTC+AGG | - | chr4.2:77302321-77302340 | MS.gene48257:intron | 40.0% | |
| GAAGCCGTATACCAAATCTA+GGG | - | chr4.2:77300325-77300344 | MS.gene48257:intron | 40.0% | |
| GTCTTGAACAAACTTGTGCA+AGG | + | chr4.2:77299114-77299133 | None:intergenic | 40.0% | |
| TCACTCAATGTTTGCATGCA+AGG | + | chr4.2:77300482-77300501 | None:intergenic | 40.0% | |
| TGATGAACACAATGAGAGGA+GGG | - | chr4.2:77299683-77299702 | MS.gene48257:intron | 40.0% | |
| TGCAATGGACATAACAAAGC+TGG | + | chr4.2:77298949-77298968 | None:intergenic | 40.0% | |
| TTACTTGATGAAGCGGTTGT+AGG | + | chr4.2:77300740-77300759 | None:intergenic | 40.0% | |
| TTCTTACGTCTATTAGCAGG+TGG | + | chr4.2:77299733-77299752 | None:intergenic | 40.0% | |
| ! | ATCATCCACTTCCTTTTCAC+CGG | - | chr4.2:77298889-77298908 | MS.gene48257:CDS | 40.0% |
| ! | GCTGAAACACTTCTAAGAAG+AGG | + | chr4.2:77299338-77299357 | None:intergenic | 40.0% |
| ! | TATTAGCAGGTGGAGGTTTT+GGG | + | chr4.2:77299723-77299742 | None:intergenic | 40.0% |
| ! | TCAGCCCTAGATTTGGTATA+CGG | + | chr4.2:77300332-77300351 | None:intergenic | 40.0% |
| ! | TGTCCAAGGTGAAGTTGATT+TGG | + | chr4.2:77299207-77299226 | None:intergenic | 40.0% |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr4.2:77301505-77301524 | MS.gene48257:intron | 40.0% |
| !! | ATTCAGCTCTATTTTTCCGG+GGG | + | chr4.2:77300517-77300536 | None:intergenic | 40.0% |
| !! | CAAGTGAGTTTTGATAGGGA+TGG | + | chr4.2:77300081-77300100 | None:intergenic | 40.0% |
| !! | CGAACATTAGCTTTCTTCAC+GGG | + | chr4.2:77302319-77302338 | None:intergenic | 40.0% |
| !! | GATTCAGCTCTATTTTTCCG+GGG | + | chr4.2:77300518-77300537 | None:intergenic | 40.0% |
| !! | GGATTCAGCTCTATTTTTCC+GGG | + | chr4.2:77300519-77300538 | None:intergenic | 40.0% |
| AAGACTGTGACAGTGAGATG+TGG | - | chr4.2:77299129-77299148 | MS.gene48257:CDS | 45.0% | |
| ACAGCAACAACTCTCTCCTT+CGG | - | chr4.2:77298922-77298941 | MS.gene48257:CDS | 45.0% | |
| ACATAACAAAGCTGGTCCGA+AGG | + | chr4.2:77298941-77298960 | None:intergenic | 45.0% | |
| AGTATGTTTAACCAGTGCCC+CGG | - | chr4.2:77300999-77301018 | MS.gene48257:intron | 45.0% | |
| CACGCATGTTAACTGAGAGA+AGG | + | chr4.2:77299167-77299186 | None:intergenic | 45.0% | |
| GAGATCCAACGTATCAAAGC+TGG | - | chr4.2:77302015-77302034 | MS.gene48257:intron | 45.0% | |
| GAGGACGTGCTTATGAAAGA+TGG | - | chr4.2:77302500-77302519 | MS.gene48257:CDS | 45.0% | |
| GATGCCATCATGAGAAAGGT+AGG | - | chr4.2:77299937-77299956 | MS.gene48257:intron | 45.0% | |
| GCTCCAAATCAACTTCACCT+TGG | - | chr4.2:77299201-77299220 | MS.gene48257:intron | 45.0% | |
| GGTTGAAGTAAGTGTGTCCA+AGG | + | chr4.2:77299221-77299240 | None:intergenic | 45.0% | |
| TCCTGATATAAGCCACAGAG+AGG | - | chr4.2:77302041-77302060 | MS.gene48257:intron | 45.0% | |
| TCCTTAAGGGAAATGCTAGC+CGG | + | chr4.2:77301029-77301048 | None:intergenic | 45.0% | |
| TTACGTCTATTAGCAGGTGG+AGG | + | chr4.2:77299730-77299749 | None:intergenic | 45.0% | |
| TTTCTGTGACACTGTTCTCG+CGG | - | chr4.2:77298970-77298989 | MS.gene48257:intron | 45.0% | |
| ! | AGAGTTGTTGCTGTTGTTGC+TGG | + | chr4.2:77298916-77298935 | None:intergenic | 45.0% |
| ! | CTATTAGCAGGTGGAGGTTT+TGG | + | chr4.2:77299724-77299743 | None:intergenic | 45.0% |
| ! | GATTCCCAGCTTTGATACGT+TGG | + | chr4.2:77302023-77302042 | None:intergenic | 45.0% |
| !! | AGGTGAAGTTGATTTGGAGC+AGG | + | chr4.2:77299201-77299220 | None:intergenic | 45.0% |
| !! | GAAGTTGATTTGGAGCAGGA+AGG | + | chr4.2:77299197-77299216 | None:intergenic | 45.0% |
| !! | TTCTTCACGGGTTGATGATC+AGG | + | chr4.2:77302307-77302326 | None:intergenic | 45.0% |
| !! | AAAAAAAAGAAAAAAAAAAA+AGG | + | chr4.2:77302389-77302408 | None:intergenic | 5.0% |
| !! | TTTATCAAAAAAAAAAAAAT+TGG | - | chr4.2:77300301-77300320 | MS.gene48257:intron | 5.0% |
| !!! | AGTATTTTTTTTAATTAATT+TGG | + | chr4.2:77300230-77300249 | None:intergenic | 5.0% |
| !!! | ATAAACATTTTTTATTTTTA+TGG | - | chr4.2:77301605-77301624 | MS.gene48257:intron | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | + | chr4.2:77301467-77301486 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTACTAAAAA+TGG | - | chr4.2:77301741-77301760 | MS.gene48257:CDS | 5.0% |
| !!! | TAAACATTTTTTTTTTATTA+CGG | - | chr4.2:77301841-77301860 | MS.gene48257:intron | 5.0% |
| !!! | TATTTTTTTTTTACTAAAAA+TGG | - | chr4.2:77301774-77301793 | MS.gene48257:CDS | 5.0% |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr4.2:77301521-77301540 | None:intergenic | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr4.2:77301520-77301539 | None:intergenic | 50.0% | |
| ACCGGCTAGCATTTCCCTTA+AGG | - | chr4.2:77301025-77301044 | MS.gene48257:intron | 50.0% | |
| ATGAAGCGGTTGTAGGCAGA+TGG | + | chr4.2:77300733-77300752 | None:intergenic | 50.0% | |
| CAAACACACGGACATTGCTC+AGG | + | chr4.2:77300678-77300697 | None:intergenic | 50.0% | |
| CATTGCTCAGGCAAACAGAC+AGG | + | chr4.2:77300666-77300685 | None:intergenic | 50.0% | |
| CTGCACTAAAAGCCTCTCTG+TGG | + | chr4.2:77302056-77302075 | None:intergenic | 50.0% | |
| GAGCTGGACAAGCAAACACA+CGG | + | chr4.2:77300690-77300709 | None:intergenic | 50.0% | |
| GCCTCTCTGTGGCTTATATC+AGG | + | chr4.2:77302045-77302064 | None:intergenic | 50.0% | |
| GGAACTCTCTGTCTCTTCTC+CGG | + | chr4.2:77300712-77300731 | None:intergenic | 50.0% | |
| GGTCATGCTAACCGGTGTTT+GGG | - | chr4.2:77300859-77300878 | MS.gene48257:intron | 50.0% | |
| GTATGTTTAACCAGTGCCCC+GGG | - | chr4.2:77301000-77301019 | MS.gene48257:intron | 50.0% | |
| GTGAGACAGAATTCTTCCCC+CGG | - | chr4.2:77300498-77300517 | MS.gene48257:intron | 50.0% | |
| TATGTTTAACCAGTGCCCCG+GGG | - | chr4.2:77301001-77301020 | MS.gene48257:intron | 50.0% | |
| TGTGTTTGCTTGTCCAGCTC+CGG | - | chr4.2:77300690-77300709 | MS.gene48257:CDS | 50.0% | |
| TTGTTGCTGGTCCGGTGAAA+AGG | + | chr4.2:77298903-77298922 | None:intergenic | 50.0% | |
| ! | TGTTGCTGTTGTTGCTGGTC+CGG | + | chr4.2:77298911-77298930 | None:intergenic | 50.0% |
| CTGGTCCGGTGAAAAGGAAG+TGG | + | chr4.2:77298897-77298916 | None:intergenic | 55.0% | |
| CTTAACCGGTGCCCAAACAC+CGG | + | chr4.2:77300873-77300892 | None:intergenic | 55.0% | |
| GGGTCATGCTAACCGGTGTT+TGG | - | chr4.2:77300858-77300877 | MS.gene48257:intron | 55.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr4.2:77301510-77301529 | MS.gene48257:intron | 60.0% | |
| CTCTGTCTCTTCTCCGGAGC+TGG | + | chr4.2:77300706-77300725 | None:intergenic | 60.0% | |
| GCTAACCGGTGTTTGGGCAC+CGG | - | chr4.2:77300865-77300884 | MS.gene48257:intron | 60.0% | |
| AAATGCTAGCCGGTGCCCCG+GGG | + | chr4.2:77301019-77301038 | None:intergenic | 65.0% | |
| GAAATGCTAGCCGGTGCCCC+GGG | + | chr4.2:77301020-77301039 | None:intergenic | 65.0% | |
| GGAAATGCTAGCCGGTGCCC+CGG | + | chr4.2:77301021-77301040 | None:intergenic | 65.0% | |
| TAACCAGTGCCCCGGGGCAC+CGG | - | chr4.2:77301007-77301026 | MS.gene48257:intron | 70.0% | |
| ! | TAGCCGGTGCCCCGGGGCAC+TGG | + | chr4.2:77301013-77301032 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 77298878 | 77302562 | 77298878 | ID=MS.gene48257 |
| chr4.2 | mRNA | 77298878 | 77302562 | 77298878 | ID=MS.gene48257.t1;Parent=MS.gene48257 |
| chr4.2 | exon | 77302449 | 77302562 | 77302449 | ID=MS.gene48257.t1.exon1;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77302449 | 77302562 | 77302449 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| chr4.2 | exon | 77302186 | 77302338 | 77302186 | ID=MS.gene48257.t1.exon2;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77302186 | 77302338 | 77302186 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| chr4.2 | exon | 77301695 | 77301824 | 77301695 | ID=MS.gene48257.t1.exon3;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77301695 | 77301824 | 77301695 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| chr4.2 | exon | 77300685 | 77300733 | 77300685 | ID=MS.gene48257.t1.exon4;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77300685 | 77300733 | 77300685 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| chr4.2 | exon | 77299354 | 77299429 | 77299354 | ID=MS.gene48257.t1.exon5;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77299354 | 77299429 | 77299354 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| chr4.2 | exon | 77299098 | 77299172 | 77299098 | ID=MS.gene48257.t1.exon6;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77299098 | 77299172 | 77299098 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| chr4.2 | exon | 77298878 | 77298946 | 77298878 | ID=MS.gene48257.t1.exon7;Parent=MS.gene48257.t1 |
| chr4.2 | CDS | 77298878 | 77298946 | 77298878 | ID=cds.MS.gene48257.t1;Parent=MS.gene48257.t1 |
| Gene Sequence |
| Protein sequence |
