Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45858.t1 | XP_013455085.1 | 96.4 | 197 | 7 | 0 | 19 | 215 | 19 | 215 | 1.50E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45858.t1 | O22152 | 70.3 | 202 | 52 | 5 | 20 | 214 | 20 | 220 | 7.8e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45858.t1 | A0A072UJ49 | 96.4 | 197 | 7 | 0 | 19 | 215 | 19 | 215 | 1.1e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45858.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene45858 | 0.809854 | 1.54E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene45858 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene052178 | MS.gene45858 | 0.838624 | 2.58E-57 | -1.69E-46 |
| MS.gene055133 | MS.gene45858 | 0.802091 | 6.61E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene45858 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene45858 | 0.844171 | 8.92E-59 | -1.69E-46 |
| MS.gene059228 | MS.gene45858 | 0.925155 | 2.69E-90 | -1.69E-46 |
| MS.gene06037 | MS.gene45858 | 0.821921 | 3.12E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene45858 | 0.805225 | 1.48E-49 | -1.69E-46 |
| MS.gene061112 | MS.gene45858 | 0.828914 | 6.90E-55 | -1.69E-46 |
| MS.gene061265 | MS.gene45858 | 0.820619 | 6.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47580 | MS.gene45858 | PPI |
| MS.gene028744 | MS.gene45858 | PPI |
| MS.gene043573 | MS.gene45858 | PPI |
| MS.gene004184 | MS.gene45858 | PPI |
| MS.gene26397 | MS.gene45858 | PPI |
| MS.gene047370 | MS.gene45858 | PPI |
| MS.gene007633 | MS.gene45858 | PPI |
| MS.gene31320 | MS.gene45858 | PPI |
| MS.gene08711 | MS.gene45858 | PPI |
| MS.gene01487 | MS.gene45858 | PPI |
| MS.gene08601 | MS.gene45858 | PPI |
| MS.gene39530 | MS.gene45858 | PPI |
| MS.gene42837 | MS.gene45858 | PPI |
| MS.gene002513 | MS.gene45858 | PPI |
| MS.gene062560 | MS.gene45858 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45858.t1 | MTR_4g025900 | 99.535 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 1.76e-163 | 449 |
| MS.gene45858.t1 | MTR_4g101660 | 70.936 | 203 | 51 | 6 | 18 | 215 | 13 | 212 | 8.23e-89 | 261 |
| MS.gene45858.t1 | MTR_4g114730 | 53.368 | 193 | 64 | 4 | 20 | 206 | 11 | 183 | 3.65e-60 | 187 |
| MS.gene45858.t1 | MTR_2g087740 | 52.041 | 196 | 83 | 5 | 19 | 211 | 8 | 195 | 1.79e-57 | 180 |
| MS.gene45858.t1 | MTR_4g050300 | 54.601 | 163 | 63 | 4 | 22 | 184 | 8 | 159 | 8.09e-51 | 163 |
| MS.gene45858.t1 | MTR_5g034030 | 50.000 | 158 | 71 | 2 | 23 | 179 | 12 | 162 | 3.10e-46 | 152 |
| MS.gene45858.t1 | MTR_5g046230 | 48.125 | 160 | 63 | 5 | 21 | 178 | 14 | 155 | 6.93e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45858.t1 | AT2G45190 | 70.443 | 203 | 52 | 5 | 19 | 214 | 19 | 220 | 1.15e-93 | 273 |
| MS.gene45858.t1 | AT4G00180 | 62.555 | 227 | 58 | 9 | 8 | 214 | 13 | 232 | 2.51e-79 | 238 |
| MS.gene45858.t1 | AT4G00180 | 61.576 | 203 | 56 | 8 | 32 | 214 | 1 | 201 | 1.52e-66 | 204 |
| MS.gene45858.t1 | AT2G45190 | 66.879 | 157 | 44 | 5 | 65 | 214 | 1 | 156 | 7.29e-63 | 193 |
| MS.gene45858.t1 | AT2G26580 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 9.42e-57 | 177 |
| MS.gene45858.t1 | AT2G26580 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 9.42e-57 | 177 |
| MS.gene45858.t1 | AT1G08465 | 56.897 | 174 | 51 | 5 | 22 | 188 | 7 | 163 | 4.82e-56 | 176 |
| MS.gene45858.t1 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 20 | 180 | 3.24e-40 | 137 |
| MS.gene45858.t1 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 51 | 211 | 1.89e-39 | 136 |
| MS.gene45858.t1 | AT1G69180 | 39.490 | 157 | 77 | 2 | 22 | 178 | 18 | 156 | 6.70e-31 | 112 |
Find 53 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTAGCAGGTGGAGGTTT+AGG | 0.195251 | 4.4:+75746878 | None:intergenic |
| CACTTTCCACACATTCATTT+CGG | 0.297543 | 4.4:-75745076 | MS.gene45858:CDS |
| ATCATCAAATCATTTGGATT+TGG | 0.304583 | 4.4:+75746935 | None:intergenic |
| CTTCAACCCTCAAACTCTTA+TGG | 0.305185 | 4.4:-75747362 | MS.gene45858:intron |
| AGAGTTGTTGCTGTTGTTGC+TGG | 0.315337 | 4.4:+75747680 | None:intergenic |
| TATTAGCAGGTGGAGGTTTA+GGG | 0.330394 | 4.4:+75746879 | None:intergenic |
| GCCTCTCTGTGGCTTATATC+AGG | 0.334060 | 4.4:+75745308 | None:intergenic |
| TTCTTCACGGGTTGATGATC+AGG | 0.349751 | 4.4:+75745046 | None:intergenic |
| GTGCTCATCATCAAATCATT+TGG | 0.352185 | 4.4:+75746929 | None:intergenic |
| TGTCCAAGGTGAAGCTGATT+AGG | 0.385355 | 4.4:+75747391 | None:intergenic |
| TGTTGCTGTTGTTGCTGGTC+CGG | 0.423782 | 4.4:+75747685 | None:intergenic |
| GAGGACGTGCTTATGAAAGA+TGG | 0.432558 | 4.4:-75744853 | MS.gene45858:CDS |
| TTCATCATCATGTTTGTTGA+AGG | 0.455442 | 4.4:+75746965 | None:intergenic |
| AATTTCTTACGTCTATTAGC+AGG | 0.457462 | 4.4:+75746866 | None:intergenic |
| GAGATCCAACGTATCAAAGC+TGG | 0.478771 | 4.4:-75745335 | MS.gene45858:CDS |
| GAAGAAAGCTAATGTTCGTC+AGG | 0.494623 | 4.4:-75745029 | MS.gene45858:intron |
| CGAACATTAGCTTTCTTCAC+GGG | 0.494923 | 4.4:+75745034 | None:intergenic |
| ACACATACCATAAGAGTTTG+AGG | 0.495280 | 4.4:+75747355 | None:intergenic |
| GGAACTCTCTGTCTCTTCTC+CGG | 0.501243 | 4.4:+75745906 | None:intergenic |
| CGAAATGAATGTGTGGAAAG+TGG | 0.502844 | 4.4:+75745077 | None:intergenic |
| TTGTTGCTGGTCCGGTGAAA+AGG | 0.508490 | 4.4:+75747693 | None:intergenic |
| CACATACCATAAGAGTTTGA+GGG | 0.516195 | 4.4:+75747356 | None:intergenic |
| ACAGCAACAACTCTCTCCTT+CGG | 0.518591 | 4.4:-75747671 | MS.gene45858:CDS |
| TGCAATGGACATAACAAAGC+TGG | 0.526911 | 4.4:+75747647 | None:intergenic |
| ATTAAACTTACTTGATGAAG+CGG | 0.531165 | 4.4:+75745871 | None:intergenic |
| ACGAACATTAGCTTTCTTCA+CGG | 0.533864 | 4.4:+75745033 | None:intergenic |
| AGGTGAAGCTGATTAGGAGC+AGG | 0.535879 | 4.4:+75747397 | None:intergenic |
| TTACGTCTATTAGCAGGTGG+AGG | 0.545636 | 4.4:+75746872 | None:intergenic |
| CTGGTCCGGTGAAAAGGAAG+TGG | 0.549720 | 4.4:+75747699 | None:intergenic |
| AGGACGTGCTTATGAAAGAT+GGG | 0.553995 | 4.4:-75744852 | MS.gene45858:CDS |
| TTTCATTGTGTAGGATTCAG+AGG | 0.560695 | 4.4:-75744872 | MS.gene45858:intron |
| ATGAAGCGGTTGTAAGCAGA+TGG | 0.561893 | 4.4:+75745885 | None:intergenic |
| TTCTTACGTCTATTAGCAGG+TGG | 0.566691 | 4.4:+75746869 | None:intergenic |
| GCTCCTAATCAGCTTCACCT+TGG | 0.572863 | 4.4:-75747394 | MS.gene45858:CDS |
| GATTCCCAGCTTTGATACGT+TGG | 0.580008 | 4.4:+75745330 | None:intergenic |
| AAAGGAAGTGGATGATGAAG+AGG | 0.587043 | 4.4:+75747711 | None:intergenic |
| AGATCCAACGTATCAAAGCT+GGG | 0.600203 | 4.4:-75745334 | MS.gene45858:CDS |
| ATGATGAGCACTATGAGAGG+AGG | 0.607690 | 4.4:-75746917 | MS.gene45858:CDS |
| GAAATGAATGTGTGGAAAGT+GGG | 0.615090 | 4.4:+75745078 | None:intergenic |
| CACGCATGTTAACTGAGAGA+AGG | 0.621310 | 4.4:+75747431 | None:intergenic |
| CATGTTAACTGAGAGAAGGT+TGG | 0.622869 | 4.4:+75747435 | None:intergenic |
| TGATGAGCACTATGAGAGGA+GGG | 0.627664 | 4.4:-75746916 | MS.gene45858:CDS |
| ACATAACAAAGCTGGTCCGA+AGG | 0.642303 | 4.4:+75747655 | None:intergenic |
| GGTTGAAGTAAGTGTGTCCA+AGG | 0.648511 | 4.4:+75747377 | None:intergenic |
| GTCTTGAACAAACTTGTGCA+AGG | 0.649953 | 4.4:+75747484 | None:intergenic |
| CAGTGTCACAGAAATTGCAA+TGG | 0.650774 | 4.4:+75747632 | None:intergenic |
| GAAGCTGATTAGGAGCAGGA+AGG | 0.664477 | 4.4:+75747401 | None:intergenic |
| TTTCTGTGACACTGTTCTCG+CGG | 0.670363 | 4.4:-75747623 | MS.gene45858:intron |
| CTGCACTAAAAGCCTCTCTG+TGG | 0.673003 | 4.4:+75745297 | None:intergenic |
| AAGACTGTGACAGTGAGATG+TGG | 0.685505 | 4.4:-75747466 | MS.gene45858:CDS |
| TCCTGATATAAGCCACAGAG+AGG | 0.691291 | 4.4:-75745309 | MS.gene45858:CDS |
| TTGATGATGAGCACTATGAG+AGG | 0.713114 | 4.4:-75746920 | MS.gene45858:CDS |
| ATAAGTCCGAAATGAATGTG+TGG | 0.723401 | 4.4:+75745070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAATTTTTAT+TGG | - | chr4.4:75747365-75747384 | MS.gene45858:CDS | 0.0% |
| !!! | TATAATTTTTAATTTTTATT+GGG | - | chr4.4:75747366-75747385 | MS.gene45858:CDS | 0.0% |
| !! | AAATTGAAAATAATCTAAAA+TGG | + | chr4.4:75747336-75747355 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAGAAAAAAAAA+AGG | + | chr4.4:75747588-75747607 | None:intergenic | 10.0% |
| !! | GATAAATTCTTTAAATATTA+GGG | + | chr4.4:75746777-75746796 | None:intergenic | 10.0% |
| !! | TGATAAATTCTTTAAATATT+AGG | + | chr4.4:75746778-75746797 | None:intergenic | 10.0% |
| !!! | AAATCTATTCAAAAATTTTT+AGG | - | chr4.4:75746353-75746372 | MS.gene45858:intron | 10.0% |
| !!! | AATTGAAAATAATCTAAAAT+GGG | + | chr4.4:75747335-75747354 | None:intergenic | 10.0% |
| !!! | ACATAAACATTTTTATTTTT+TGG | - | chr4.4:75746842-75746861 | MS.gene45858:intron | 10.0% |
| !!! | TATTTTGTATTTTTGTATTT+TGG | - | chr4.4:75745460-75745479 | MS.gene45858:intron | 10.0% |
| !!! | TTCTTTTTACTAATTAAAAA+TGG | - | chr4.4:75746975-75746994 | MS.gene45858:CDS | 10.0% |
| !! | AAGAAAAATAAATTCATATG+TGG | + | chr4.4:75747067-75747086 | None:intergenic | 15.0% |
| !! | ATCAATTTATGAAATTATCT+AGG | - | chr4.4:75745395-75745414 | MS.gene45858:intron | 15.0% |
| !! | ATTTGGAGAAAATATTATAA+TGG | - | chr4.4:75746928-75746947 | MS.gene45858:CDS | 15.0% |
| !! | CTCTAATTTGAAAATAATAT+TGG | + | chr4.4:75746208-75746227 | None:intergenic | 15.0% |
| !! | TTGAAGATTTGTAAATTTAA+TGG | - | chr4.4:75745348-75745367 | MS.gene45858:intron | 15.0% |
| !! | TTTACTAATTAAAAATGGTA+TGG | - | chr4.4:75746980-75746999 | MS.gene45858:CDS | 15.0% |
| !! | TTTAGTATATCAATTGTATT+TGG | - | chr4.4:75746911-75746930 | MS.gene45858:CDS | 15.0% |
| !!! | AAAATATGATTTGATTTTCA+GGG | - | chr4.4:75747189-75747208 | MS.gene45858:intron | 15.0% |
| !!! | ATTTTTGTATTTTGGAAATT+AGG | - | chr4.4:75745468-75745487 | MS.gene45858:intron | 15.0% |
| !!! | CATTCATTTTAAGTTATTTT+TGG | - | chr4.4:75746703-75746722 | MS.gene45858:intron | 15.0% |
| !!! | CATTTTCTTTATCAAAAAAT+TGG | - | chr4.4:75746244-75746263 | MS.gene45858:intron | 15.0% |
| !!! | GATAATTCATTTAACTTTAA+TGG | - | chr4.4:75747104-75747123 | MS.gene45858:intron | 15.0% |
| !!! | TGTAAATTTAATGGATTATT+TGG | - | chr4.4:75745357-75745376 | MS.gene45858:intron | 15.0% |
| !!! | TTCTTTATTTTGTTTTTCTT+AGG | - | chr4.4:75745034-75745053 | MS.gene45858:CDS | 15.0% |
| !!! | TTTTTTGATAAAGAAAATGT+TGG | + | chr4.4:75746243-75746262 | None:intergenic | 15.0% |
| !! | AAAAAAGAGAAGGAAAAAAA+AGG | - | chr4.4:75746003-75746022 | MS.gene45858:intron | 20.0% |
| !! | AAAGAAAATGTTGGAAATTA+GGG | + | chr4.4:75746234-75746253 | None:intergenic | 20.0% |
| !! | AATCTTAACTCTTAATCAAA+AGG | + | chr4.4:75745003-75745022 | None:intergenic | 20.0% |
| !! | ACACATAGAGTAAAAAAAAA+AGG | + | chr4.4:75746380-75746399 | None:intergenic | 20.0% |
| !! | ATCTTAACTCTTAATCAAAA+GGG | + | chr4.4:75745002-75745021 | None:intergenic | 20.0% |
| !! | CAAAAATACAAAATAACCAT+AGG | + | chr4.4:75745455-75745474 | None:intergenic | 20.0% |
| !! | TAAAGAAAATGTTGGAAATT+AGG | + | chr4.4:75746235-75746254 | None:intergenic | 20.0% |
| !! | TACTTCAAACTATTTACAAA+AGG | - | chr4.4:75746318-75746337 | MS.gene45858:intron | 20.0% |
| !! | TTGAGTTTAACTAATTATTC+AGG | - | chr4.4:75745544-75745563 | MS.gene45858:intron | 20.0% |
| !!! | AATCAAATCATATTTTGTCA+AGG | + | chr4.4:75747185-75747204 | None:intergenic | 20.0% |
| !!! | ATATATATATGTAGTTTGCT+TGG | + | chr4.4:75745318-75745337 | None:intergenic | 20.0% |
| !!! | CAAAATATGATTTGATTTTC+AGG | - | chr4.4:75747188-75747207 | MS.gene45858:intron | 20.0% |
| !!! | TGCTAAACATTTTGTTATTA+CGG | - | chr4.4:75747039-75747058 | MS.gene45858:intron | 20.0% |
| !!! | TGTATTATTTTCTCATTTGT+GGG | - | chr4.4:75747424-75747443 | MS.gene45858:CDS | 20.0% |
| !!! | TTCTTTTTTTTTCTTCCTTT+TGG | - | chr4.4:75747595-75747614 | MS.gene45858:intron | 20.0% |
| !!! | TTTTGCTTTTGTACATTAAT+TGG | + | chr4.4:75745987-75746006 | None:intergenic | 20.0% |
| ! | AGAGAAAACTTATAATGATG+AGG | - | chr4.4:75746492-75746511 | MS.gene45858:intron | 25.0% |
| ! | AGTAAGATTCAGAATTTCAT+TGG | + | chr4.4:75747296-75747315 | None:intergenic | 25.0% |
| ! | AGTTTAACTAATTATTCAGG+AGG | - | chr4.4:75745547-75745566 | MS.gene45858:intron | 25.0% |
| ! | ATCATCAAATCATTTGGATT+TGG | + | chr4.4:75745617-75745636 | None:intergenic | 25.0% |
| ! | ATTAAACTTACTTGATGAAG+CGG | + | chr4.4:75746681-75746700 | None:intergenic | 25.0% |
| ! | CTAAAATTCTTTCATTGTGT+AGG | - | chr4.4:75747668-75747687 | MS.gene45858:CDS | 25.0% |
| ! | TATACAACTATCTATTGAGT+TGG | - | chr4.4:75745491-75745510 | MS.gene45858:intron | 25.0% |
| !! | AAAGCATAACTCTTATTTCT+AGG | - | chr4.4:75747634-75747653 | MS.gene45858:CDS | 25.0% |
| !! | AACTCAAAAGAAGTGTAAAA+TGG | + | chr4.4:75745946-75745965 | None:intergenic | 25.0% |
| !! | AGTACACATTTTTATTGCAT+CGG | - | chr4.4:75747401-75747420 | MS.gene45858:CDS | 25.0% |
| !! | CTACACAATGAAAGAATTTT+AGG | + | chr4.4:75747670-75747689 | None:intergenic | 25.0% |
| !! | GTATTATTTTCTCATTTGTG+GGG | - | chr4.4:75747425-75747444 | MS.gene45858:CDS | 25.0% |
| !! | GTGTATTATTTTCTCATTTG+TGG | - | chr4.4:75747423-75747442 | MS.gene45858:CDS | 25.0% |
| !! | TATTATTTTCTCATTTGTGG+GGG | - | chr4.4:75747426-75747445 | MS.gene45858:CDS | 25.0% |
| !!! | AAGCATAACTCTTATTTCTA+GGG | - | chr4.4:75747635-75747654 | MS.gene45858:CDS | 25.0% |
| !!! | ACAACATTTTTTTTGGACAA+AGG | - | chr4.4:75746803-75746822 | MS.gene45858:intron | 25.0% |
| !!! | ATTTTCAAGTGAGTTTTGAT+AGG | + | chr4.4:75746036-75746055 | None:intergenic | 25.0% |
| !!! | CAAGAGTACAACATTTTTTT+TGG | - | chr4.4:75746796-75746815 | MS.gene45858:intron | 25.0% |
| !!! | TTTTCAAGTGAGTTTTGATA+GGG | + | chr4.4:75746035-75746054 | None:intergenic | 25.0% |
| AAAAATAGAGCTGAATCCAT+TGG | - | chr4.4:75746454-75746473 | MS.gene45858:intron | 30.0% | |
| AATTTCTTACGTCTATTAGC+AGG | + | chr4.4:75745686-75745705 | None:intergenic | 30.0% | |
| AGAAACCCTATACAAAATCT+AGG | - | chr4.4:75746267-75746286 | MS.gene45858:intron | 30.0% | |
| ATTCTGAATCTTACTCTCTT+AGG | - | chr4.4:75747301-75747320 | MS.gene45858:intron | 30.0% | |
| GAAACCCTATACAAAATCTA+GGG | - | chr4.4:75746268-75746287 | MS.gene45858:intron | 30.0% | |
| GTACAAAAGCAAAAAAGAGA+AGG | - | chr4.4:75745993-75746012 | MS.gene45858:intron | 30.0% | |
| TAAATGTAGATAGCTAGCTA+GGG | + | chr4.4:75747557-75747576 | None:intergenic | 30.0% | |
| TAATAACAATCACTCTCCAA+TGG | + | chr4.4:75746473-75746492 | None:intergenic | 30.0% | |
| TTTCTTGATGTACTTCAAAG+TGG | - | chr4.4:75746067-75746086 | MS.gene45858:intron | 30.0% | |
| ! | AGATTCTTTTGATGCTATCA+TGG | - | chr4.4:75745876-75745895 | MS.gene45858:intron | 30.0% |
| ! | GATTCTTTTGATGCTATCAT+GGG | - | chr4.4:75745877-75745896 | MS.gene45858:intron | 30.0% |
| ! | TTAGCCCTAGATTTTGTATA+GGG | + | chr4.4:75746275-75746294 | None:intergenic | 30.0% |
| ! | TTCATCATCATGTTTGTTGA+AGG | + | chr4.4:75745587-75745606 | None:intergenic | 30.0% |
| ! | TTTAGCCCTAGATTTTGTAT+AGG | + | chr4.4:75746276-75746295 | None:intergenic | 30.0% |
| !! | ACTATCTATTGAGTTGGAAT+TGG | - | chr4.4:75745497-75745516 | MS.gene45858:intron | 30.0% |
| !! | GCCATTTATTTTCTTTCAGT+GGG | - | chr4.4:75747448-75747467 | MS.gene45858:CDS | 30.0% |
| !! | GTTAATTTTTGTTGTGCCTA+TGG | - | chr4.4:75745436-75745455 | MS.gene45858:intron | 30.0% |
| ACACATACCATAAGAGTTTG+AGG | + | chr4.4:75745197-75745216 | None:intergenic | 35.0% | |
| ACATGAGAAATGGTGAAGAA+GGG | + | chr4.4:75745809-75745828 | None:intergenic | 35.0% | |
| AGCATAGCATACATGAGAAA+TGG | + | chr4.4:75745819-75745838 | None:intergenic | 35.0% | |
| AGTTGTCAGAGTTTGAATCT+CGG | - | chr4.4:75745265-75745284 | MS.gene45858:intron | 35.0% | |
| ATAAGTCCGAAATGAATGTG+TGG | + | chr4.4:75747482-75747501 | None:intergenic | 35.0% | |
| CACATACCATAAGAGTTTGA+GGG | + | chr4.4:75745196-75745215 | None:intergenic | 35.0% | |
| CACTTTCCACACATTCATTT+CGG | - | chr4.4:75747473-75747492 | MS.gene45858:CDS | 35.0% | |
| GAAATGAATGTGTGGAAAGT+GGG | + | chr4.4:75747474-75747493 | None:intergenic | 35.0% | |
| GAAGTGTAAAATGGACAGAA+GGG | + | chr4.4:75745937-75745956 | None:intergenic | 35.0% | |
| GCCCACTGAAAGAAAATAAA+TGG | + | chr4.4:75747452-75747471 | None:intergenic | 35.0% | |
| GTAAATGTAGATAGCTAGCT+AGG | + | chr4.4:75747558-75747577 | None:intergenic | 35.0% | |
| GTGCTCATCATCAAATCATT+TGG | + | chr4.4:75745623-75745642 | None:intergenic | 35.0% | |
| TACATGAGAAATGGTGAAGA+AGG | + | chr4.4:75745810-75745829 | None:intergenic | 35.0% | |
| TCATTTAATGTGCTGCCAAA+AGG | + | chr4.4:75747613-75747632 | None:intergenic | 35.0% | |
| TTTCATTGTGTAGGATTCAG+AGG | - | chr4.4:75747677-75747696 | MS.gene45858:CDS | 35.0% | |
| ! | AGAAGTGTAAAATGGACAGA+AGG | + | chr4.4:75745938-75745957 | None:intergenic | 35.0% |
| ! | GAAAGAAGAGAGTTCTGATT+TGG | - | chr4.4:75746556-75746575 | MS.gene45858:intron | 35.0% |
| ! | TTTTGATGCTATCATGGGAA+GGG | - | chr4.4:75745882-75745901 | MS.gene45858:CDS | 35.0% |
| !! | ACGAACATTAGCTTTCTTCA+CGG | + | chr4.4:75747519-75747538 | None:intergenic | 35.0% |
| !! | GCTGAAACACTTTTAAGAAG+AGG | + | chr4.4:75745292-75745311 | None:intergenic | 35.0% |
| !! | GGCCATTTATTTTCTTTCAG+TGG | - | chr4.4:75747447-75747466 | MS.gene45858:CDS | 35.0% |
| !! | TGGATTCAGCTCTATTTTTC+CGG | + | chr4.4:75746453-75746472 | None:intergenic | 35.0% |
| AAAATGGACAGAAGGGTTTC+AGG | + | chr4.4:75745930-75745949 | None:intergenic | 40.0% | |
| AAAGGAAGTGGATGATGAAG+AGG | + | chr4.4:75744841-75744860 | None:intergenic | 40.0% | |
| AGATCCAACGTATCAAAGCT+GGG | - | chr4.4:75747215-75747234 | MS.gene45858:intron | 40.0% | |
| AGGACGTGCTTATGAAAGAT+GGG | - | chr4.4:75747697-75747716 | MS.gene45858:CDS | 40.0% | |
| CAGTGTCACAGAAATTGCAA+TGG | + | chr4.4:75744920-75744939 | None:intergenic | 40.0% | |
| CATGTTAACTGAGAGAAGGT+TGG | + | chr4.4:75745117-75745136 | None:intergenic | 40.0% | |
| CGAAATGAATGTGTGGAAAG+TGG | + | chr4.4:75747475-75747494 | None:intergenic | 40.0% | |
| CTTCAACCCTCAAACTCTTA+TGG | - | chr4.4:75745187-75745206 | MS.gene45858:intron | 40.0% | |
| GAAGAAAGCTAATGTTCGTC+AGG | - | chr4.4:75747520-75747539 | MS.gene45858:intron | 40.0% | |
| GTCTTGAACAAACTTGTGCA+AGG | + | chr4.4:75745068-75745087 | None:intergenic | 40.0% | |
| TATTAGCAGGTGGAGGTTTA+GGG | + | chr4.4:75745673-75745692 | None:intergenic | 40.0% | |
| TCACTCAATGTTTGCATGCA+AGG | + | chr4.4:75746415-75746434 | None:intergenic | 40.0% | |
| TGCAATGGACATAACAAAGC+TGG | + | chr4.4:75744905-75744924 | None:intergenic | 40.0% | |
| TTCTTACGTCTATTAGCAGG+TGG | + | chr4.4:75745683-75745702 | None:intergenic | 40.0% | |
| ! | ATCATCCACTTCCTTTTCAC+CGG | - | chr4.4:75744845-75744864 | MS.gene45858:CDS | 40.0% |
| ! | CTTTTGATGCTATCATGGGA+AGG | - | chr4.4:75745881-75745900 | MS.gene45858:intron | 40.0% |
| !! | ATTCAGCTCTATTTTTCCGG+GGG | + | chr4.4:75746450-75746469 | None:intergenic | 40.0% |
| !! | CAAGTGAGTTTTGATAGGGA+TGG | + | chr4.4:75746031-75746050 | None:intergenic | 40.0% |
| !! | CGAACATTAGCTTTCTTCAC+GGG | + | chr4.4:75747518-75747537 | None:intergenic | 40.0% |
| !! | GATTCAGCTCTATTTTTCCG+GGG | + | chr4.4:75746451-75746470 | None:intergenic | 40.0% |
| !! | GGATTCAGCTCTATTTTTCC+GGG | + | chr4.4:75746452-75746471 | None:intergenic | 40.0% |
| !! | TTGATGATGAGCACTATGAG+AGG | - | chr4.4:75745629-75745648 | MS.gene45858:intron | 40.0% |
| AAGACTGTGACAGTGAGATG+TGG | - | chr4.4:75745083-75745102 | MS.gene45858:CDS | 45.0% | |
| ACAGCAACAACTCTCTCCTT+CGG | - | chr4.4:75744878-75744897 | MS.gene45858:intron | 45.0% | |
| ACATAACAAAGCTGGTCCGA+AGG | + | chr4.4:75744897-75744916 | None:intergenic | 45.0% | |
| ATGAAGCGGTTGTAAGCAGA+TGG | + | chr4.4:75746667-75746686 | None:intergenic | 45.0% | |
| ATGATGAGCACTATGAGAGG+AGG | - | chr4.4:75745632-75745651 | MS.gene45858:intron | 45.0% | |
| CACGCATGTTAACTGAGAGA+AGG | + | chr4.4:75745121-75745140 | None:intergenic | 45.0% | |
| CTATTAGCAGGTGGAGGTTT+AGG | + | chr4.4:75745674-75745693 | None:intergenic | 45.0% | |
| GAGATCCAACGTATCAAAGC+TGG | - | chr4.4:75747214-75747233 | MS.gene45858:intron | 45.0% | |
| GAGGACGTGCTTATGAAAGA+TGG | - | chr4.4:75747696-75747715 | MS.gene45858:CDS | 45.0% | |
| GGTTGAAGTAAGTGTGTCCA+AGG | + | chr4.4:75745175-75745194 | None:intergenic | 45.0% | |
| TCCTGATATAAGCCACAGAG+AGG | - | chr4.4:75747240-75747259 | MS.gene45858:intron | 45.0% | |
| TGATGAGCACTATGAGAGGA+GGG | - | chr4.4:75745633-75745652 | MS.gene45858:intron | 45.0% | |
| TGTCCAAGGTGAAGCTGATT+AGG | + | chr4.4:75745161-75745180 | None:intergenic | 45.0% | |
| TTACGTCTATTAGCAGGTGG+AGG | + | chr4.4:75745680-75745699 | None:intergenic | 45.0% | |
| TTTCTGTGACACTGTTCTCG+CGG | - | chr4.4:75744926-75744945 | MS.gene45858:intron | 45.0% | |
| ! | AGAGTTGTTGCTGTTGTTGC+TGG | + | chr4.4:75744872-75744891 | None:intergenic | 45.0% |
| ! | GATTCCCAGCTTTGATACGT+TGG | + | chr4.4:75747222-75747241 | None:intergenic | 45.0% |
| !! | TTCTTCACGGGTTGATGATC+AGG | + | chr4.4:75747506-75747525 | None:intergenic | 45.0% |
| !!! | AGTATTTTTTTTAATTAATT+TGG | + | chr4.4:75746180-75746199 | None:intergenic | 5.0% |
| AGGTGAAGCTGATTAGGAGC+AGG | + | chr4.4:75745155-75745174 | None:intergenic | 50.0% | |
| CAAACACACGGACATTGCTC+AGG | + | chr4.4:75746612-75746631 | None:intergenic | 50.0% | |
| CATTGCTCAGGCAAACAGAC+AGG | + | chr4.4:75746600-75746619 | None:intergenic | 50.0% | |
| CTGCACTAAAAGCCTCTCTG+TGG | + | chr4.4:75747255-75747274 | None:intergenic | 50.0% | |
| GAAGCTGATTAGGAGCAGGA+AGG | + | chr4.4:75745151-75745170 | None:intergenic | 50.0% | |
| GAGCTGGACAAGCAAACACA+CGG | + | chr4.4:75746624-75746643 | None:intergenic | 50.0% | |
| GATGCTATCATGGGAAGGGT+AGG | - | chr4.4:75745886-75745905 | MS.gene45858:CDS | 50.0% | |
| GCCTCTCTGTGGCTTATATC+AGG | + | chr4.4:75747244-75747263 | None:intergenic | 50.0% | |
| GCTCCTAATCAGCTTCACCT+TGG | - | chr4.4:75745155-75745174 | MS.gene45858:intron | 50.0% | |
| GGAACTCTCTGTCTCTTCTC+CGG | + | chr4.4:75746646-75746665 | None:intergenic | 50.0% | |
| TGTGTTTGCTTGTCCAGCTC+CGG | - | chr4.4:75746624-75746643 | MS.gene45858:intron | 50.0% | |
| TTGTTGCTGGTCCGGTGAAA+AGG | + | chr4.4:75744859-75744878 | None:intergenic | 50.0% | |
| ! | TGTTGCTGTTGTTGCTGGTC+CGG | + | chr4.4:75744867-75744886 | None:intergenic | 50.0% |
| CTGGTCCGGTGAAAAGGAAG+TGG | + | chr4.4:75744853-75744872 | None:intergenic | 55.0% | |
| GTGAGACAGAAGTCTTCCCC+CGG | - | chr4.4:75746431-75746450 | MS.gene45858:intron | 55.0% | |
| CTCTGTCTCTTCTCCGGAGC+TGG | + | chr4.4:75746640-75746659 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 75744834 | 75747737 | 75744834 | ID=MS.gene45858 |
| chr4.4 | mRNA | 75744834 | 75747737 | 75744834 | ID=MS.gene45858.t1;Parent=MS.gene45858 |
| chr4.4 | exon | 75747624 | 75747737 | 75747624 | ID=MS.gene45858.t1.exon1;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75747624 | 75747737 | 75747624 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| chr4.4 | exon | 75747363 | 75747515 | 75747363 | ID=MS.gene45858.t1.exon2;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75747363 | 75747515 | 75747363 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| chr4.4 | exon | 75746876 | 75747005 | 75746876 | ID=MS.gene45858.t1.exon3;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75746876 | 75747005 | 75746876 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| chr4.4 | exon | 75745882 | 75745930 | 75745882 | ID=MS.gene45858.t1.exon4;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75745882 | 75745930 | 75745882 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| chr4.4 | exon | 75745286 | 75745361 | 75745286 | ID=MS.gene45858.t1.exon5;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75745286 | 75745361 | 75745286 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| chr4.4 | exon | 75745030 | 75745104 | 75745030 | ID=MS.gene45858.t1.exon6;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75745030 | 75745104 | 75745030 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| chr4.4 | exon | 75744834 | 75744881 | 75744834 | ID=MS.gene45858.t1.exon7;Parent=MS.gene45858.t1 |
| chr4.4 | CDS | 75744834 | 75744881 | 75744834 | ID=cds.MS.gene45858.t1;Parent=MS.gene45858.t1 |
| Gene Sequence |
| Protein sequence |
