AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47580.t1 MTR_4g088210 91.983 711 18 3 1 672 2 712 0.0 1338
MS.gene47580.t1 MTR_4g088210 91.799 695 18 3 1 656 2 696 0.0 1304
MS.gene47580.t1 MTR_2g014770 66.557 607 168 16 26 606 78 675 0.0 756
MS.gene47580.t1 MTR_2g014770 80.270 370 69 3 26 394 78 444 0.0 611
MS.gene47580.t1 MTR_2g014770 40.191 209 97 11 426 611 408 611 2.64e-25 111
MS.gene47580.t1 MTR_2g093740 40.584 616 328 14 26 619 81 680 4.11e-131 402
MS.gene47580.t1 MTR_2g093740 40.584 616 328 14 26 619 81 680 4.51e-130 401
MS.gene47580.t1 MTR_2g093740 40.584 616 328 14 26 619 81 680 1.11e-129 402
MS.gene47580.t1 MTR_4g060460 49.237 459 196 9 26 462 79 522 4.07e-129 400
MS.gene47580.t1 MTR_4g060460 49.353 464 193 11 26 462 79 527 1.87e-128 399
MS.gene47580.t1 MTR_2g093740 39.746 629 328 15 26 619 81 693 3.95e-127 392
MS.gene47580.t1 MTR_2g093740 39.746 629 328 15 26 619 81 693 2.11e-126 392
MS.gene47580.t1 MTR_2g093740 39.746 629 328 15 26 619 81 693 9.85e-126 392
MS.gene47580.t1 MTR_2g093740 40.687 553 301 12 84 619 8 550 8.85e-117 363
MS.gene47580.t1 MTR_2g093740 40.687 553 301 12 84 619 8 550 2.46e-116 363
MS.gene47580.t1 MTR_2g093740 39.753 566 301 13 84 619 8 563 3.66e-113 354
MS.gene47580.t1 MTR_2g093740 39.753 566 301 13 84 619 8 563 1.28e-112 354
MS.gene47580.t1 MTR_8g100050 50.000 352 160 3 46 392 110 450 1.41e-109 347
MS.gene47580.t1 MTR_8g100050 50.000 352 160 3 46 392 110 450 2.00e-108 347
MS.gene47580.t1 MTR_4g021580 45.736 387 186 9 41 424 65 430 1.59e-101 323
MS.gene47580.t1 MTR_4g021580 45.736 387 186 9 41 424 65 430 4.39e-101 323
MS.gene47580.t1 MTR_2g005240 51.077 325 145 4 41 363 69 381 8.05e-101 323
MS.gene47580.t1 MTR_8g027440 50.000 320 142 7 41 358 75 378 1.12e-95 309
MS.gene47580.t1 MTR_2g018690 48.368 337 153 7 30 362 64 383 2.29e-93 309
MS.gene47580.t1 MTR_5g076270 48.447 322 143 4 41 355 71 376 9.12e-93 306
MS.gene47580.t1 MTR_8g079492 48.000 325 153 6 42 362 70 382 1.10e-91 305
MS.gene47580.t1 MTR_7g062540 44.353 363 177 7 42 401 61 401 1.18e-91 299
MS.gene47580.t1 MTR_8g079492 48.000 325 153 6 42 362 70 382 1.26e-91 304
MS.gene47580.t1 MTR_3g064050 48.137 322 144 4 41 355 73 378 1.61e-90 300
MS.gene47580.t1 MTR_8g079492 49.359 312 142 6 55 362 1 300 3.57e-89 296
MS.gene47580.t1 MTR_2g043250 50.667 300 134 4 41 338 69 356 3.06e-88 298
MS.gene47580.t1 MTR_4g124900 48.243 313 147 5 28 338 57 356 8.92e-88 297
MS.gene47580.t1 MTR_4g124900 48.243 313 147 5 28 338 57 356 1.35e-87 297
MS.gene47580.t1 MTR_1g024025 48.580 317 146 5 42 355 91 393 3.61e-87 297
MS.gene47580.t1 MTR_8g101360 48.867 309 127 5 41 338 78 366 5.12e-87 295
MS.gene47580.t1 MTR_8g446900 39.296 341 181 5 41 379 7 323 1.26e-75 248
MS.gene47580.t1 MTR_2g094570 40.282 355 154 9 26 337 36 375 1.37e-71 245
MS.gene47580.t1 MTR_2g094570 40.282 355 154 9 26 337 36 375 1.77e-71 245
MS.gene47580.t1 MTR_2g094570 40.282 355 154 9 26 337 92 431 3.56e-71 246
MS.gene47580.t1 MTR_1g064430 33.008 512 260 17 26 466 65 564 7.03e-67 233
MS.gene47580.t1 MTR_1g064430 33.008 512 260 17 26 466 52 551 1.00e-66 232
MS.gene47580.t1 MTR_1g094960 38.968 349 166 9 26 337 44 382 1.53e-66 230
MS.gene47580.t1 MTR_4g058930 38.375 357 164 8 26 337 37 382 1.98e-62 220
MS.gene47580.t1 MTR_4g058930 38.375 357 164 8 26 337 37 382 3.25e-62 220
MS.gene47580.t1 MTR_7g101280 36.464 362 169 11 26 337 56 406 1.49e-59 212
MS.gene47580.t1 MTR_0041s0110 36.464 362 169 11 26 337 56 406 1.49e-59 212
MS.gene47580.t1 MTR_7g101275 39.456 294 164 6 26 316 17 299 6.85e-59 204
MS.gene47580.t1 MTR_3g073420 36.000 350 172 8 45 357 65 399 1.21e-54 197
MS.gene47580.t1 MTR_5g040880 34.891 321 177 8 25 337 35 331 8.52e-53 190
MS.gene47580.t1 MTR_0041s0120 36.624 314 157 9 26 316 17 311 4.24e-49 177
MS.gene47580.t1 MTR_5g061220 32.659 346 177 11 26 337 44 367 2.36e-47 175
MS.gene47580.t1 MTR_2g024430 32.240 366 211 10 26 381 45 383 1.89e-46 172
MS.gene47580.t1 MTR_1g058210 29.283 321 199 8 26 337 37 338 2.47e-39 151
MS.gene47580.t1 MTR_5g040740 31.699 306 172 9 25 319 36 315 2.79e-38 147
MS.gene47580.t1 MTR_5g082140 30.841 321 194 9 25 337 36 336 2.06e-37 145
MS.gene47580.t1 MTR_2g006270 30.537 298 174 9 47 337 65 336 5.22e-32 130
MS.gene47580.t1 MTR_5g060630 28.571 350 212 12 26 343 37 380 9.09e-29 121
MS.gene47580.t1 MTR_5g460740 28.571 350 212 12 26 343 37 380 9.09e-29 121
MS.gene47580.t1 MTR_5g060780 28.107 338 204 12 26 347 37 351 2.24e-28 118
MS.gene47580.t1 MTR_5g460920 28.107 338 204 12 26 347 37 351 2.28e-28 118
MS.gene47580.t1 MTR_2g006380 28.963 328 183 14 26 337 45 338 1.35e-27 117
MS.gene47580.t1 MTR_3g064050 43.478 138 76 2 220 355 4 141 1.66e-26 115
MS.gene47580.t1 MTR_5g061890 27.811 338 205 12 26 347 37 351 2.12e-25 109
MS.gene47580.t1 MTR_5g062970 33.673 196 90 5 26 205 63 234 6.53e-25 104
MS.gene47580.t1 MTR_5g074840 47.253 91 48 0 171 261 58 148 2.58e-17 80.1
MS.gene47580.t1 MTR_5g032260 32.370 173 98 4 234 390 50 219 1.14e-14 77.0
MS.gene47580.t1 MTR_7g117455 40.217 92 54 1 107 198 116 206 3.29e-12 69.7
MS.gene47580.t1 MTR_8g023990 40.206 97 56 2 107 203 170 264 5.11e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47580.t1 AT2G33860 57.370 441 155 5 26 465 79 487 2.18e-172 506
MS.gene47580.t1 AT2G33860 57.660 359 122 2 108 465 1 330 1.69e-140 418
MS.gene47580.t1 AT5G60450 40.981 632 284 18 26 622 66 643 1.63e-125 390
MS.gene47580.t1 AT5G60450 40.981 632 284 18 26 622 90 667 3.52e-125 390
MS.gene47580.t1 AT5G62000 47.899 357 170 3 41 392 107 452 1.05e-107 346
MS.gene47580.t1 AT5G62000 47.899 357 170 3 41 392 107 452 1.05e-107 346
MS.gene47580.t1 AT5G62000 47.899 357 170 3 41 392 107 452 1.05e-107 346
MS.gene47580.t1 AT5G62000 47.899 357 170 3 41 392 107 452 1.05e-107 346
MS.gene47580.t1 AT5G62000 47.899 357 170 3 41 392 107 452 2.15e-107 345
MS.gene47580.t1 AT1G59750 49.518 311 138 3 41 347 68 363 9.88e-96 309
MS.gene47580.t1 AT1G59750 49.518 311 138 3 41 347 68 363 1.19e-95 309
MS.gene47580.t1 AT1G59750 49.518 311 138 3 41 347 68 363 1.19e-95 309
MS.gene47580.t1 AT1G59750 49.518 311 138 3 41 347 68 363 1.24e-95 309
MS.gene47580.t1 AT3G61830 46.687 332 158 5 41 368 21 337 3.94e-94 301
MS.gene47580.t1 AT4G23980 47.352 321 147 5 26 338 37 343 4.82e-94 304
MS.gene47580.t1 AT4G23980 47.352 321 147 5 26 338 37 343 5.15e-94 304
MS.gene47580.t1 AT3G61830 46.687 332 158 5 41 368 72 388 2.49e-93 301
MS.gene47580.t1 AT2G46530 46.707 334 143 8 26 345 46 358 7.10e-93 300
MS.gene47580.t1 AT2G46530 46.707 334 143 8 26 345 67 379 1.36e-92 300
MS.gene47580.t1 AT1G19220 51.171 299 134 3 41 338 69 356 1.46e-89 302
MS.gene47580.t1 AT1G19850 50.831 301 131 6 41 337 90 377 1.54e-89 298
MS.gene47580.t1 AT1G19850 50.831 301 131 6 41 337 101 388 2.13e-89 298
MS.gene47580.t1 AT5G37020 46.201 329 157 5 30 355 63 374 2.30e-89 295
MS.gene47580.t1 AT1G30330 49.085 328 150 5 41 362 67 383 2.42e-89 298
MS.gene47580.t1 AT1G30330 49.085 328 150 5 41 362 69 385 2.47e-89 298
MS.gene47580.t1 AT1G30330 49.085 328 150 5 41 362 69 385 2.47e-89 298
MS.gene47580.t1 AT5G37020 46.201 329 157 5 30 355 63 374 7.27e-89 295
MS.gene47580.t1 AT2G46530 54.622 238 104 3 109 345 37 271 3.41e-84 275
MS.gene47580.t1 AT5G20730 47.883 307 147 4 33 338 63 357 9.54e-84 286
MS.gene47580.t1 AT5G37020 53.815 249 113 2 109 355 31 279 1.07e-82 276
MS.gene47580.t1 AT5G20730 47.727 308 147 5 33 338 63 358 2.72e-82 282
MS.gene47580.t1 AT5G20730 47.727 308 147 5 33 338 63 358 3.63e-82 282
MS.gene47580.t1 AT1G35240 45.302 298 144 5 41 337 73 352 3.68e-79 263
MS.gene47580.t1 AT1G35540 42.331 326 149 6 19 337 59 352 1.01e-78 263
MS.gene47580.t1 AT1G34410 36.105 457 241 13 41 484 73 491 5.41e-78 261
MS.gene47580.t1 AT1G34390 45.302 298 142 6 41 337 73 350 3.45e-77 258
MS.gene47580.t1 AT1G34170 41.176 323 166 6 41 360 71 372 6.87e-77 255
MS.gene47580.t1 AT1G35520 43.960 298 148 5 41 337 73 352 6.86e-76 254
MS.gene47580.t1 AT1G34310 43.289 298 150 5 41 337 73 352 6.83e-74 249
MS.gene47580.t1 AT2G28350 37.824 386 186 10 26 368 35 409 2.40e-69 239
MS.gene47580.t1 AT2G28350 37.824 386 186 10 26 368 35 409 3.62e-69 239
MS.gene47580.t1 AT4G30080 38.905 347 170 7 26 337 44 383 2.26e-65 228
MS.gene47580.t1 AT1G34170 37.771 323 151 6 41 360 71 346 9.30e-65 222
MS.gene47580.t1 AT1G34170 37.771 323 151 6 41 360 71 346 5.80e-64 221
MS.gene47580.t1 AT1G77850 32.454 379 200 8 26 370 44 400 4.19e-53 192
MS.gene47580.t1 AT1G77850 32.454 379 200 8 26 370 44 400 4.79e-53 192
MS.gene47580.t1 AT1G43950 46.429 168 72 5 41 208 73 222 1.46e-39 145
MS.gene47580.t1 AT2G46870 35.833 120 71 2 107 221 33 151 1.11e-13 72.8
MS.gene47580.t1 AT1G01030 40.217 92 54 1 107 198 54 144 4.76e-13 71.2
MS.gene47580.t1 AT1G01030 40.217 92 54 1 107 198 54 144 5.94e-13 71.2
MS.gene47580.t1 AT4G01500 39.130 92 53 1 107 198 34 122 7.85e-13 70.9
MS.gene47580.t1 AT3G25730 33.594 128 74 4 91 207 156 283 1.94e-11 66.2
MS.gene47580.t1 AT1G68840 34.127 126 78 3 86 207 163 287 6.95e-11 64.7
MS.gene47580.t1 AT1G68840 34.127 126 78 3 86 207 163 287 6.95e-11 64.7

Find 177 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACCTTGCAAGACCTTC+TGG 0.208058 4.3:+25230694 None:intergenic
ACAAGTCTCACCTCACTTTC+AGG 0.212334 4.3:+25233694 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.215232 4.3:+25230487 None:intergenic
TTCATCAAAGCTAGAGTTTC+CGG 0.216516 4.3:-25230859 MS.gene47580:CDS
ATTCCTCTAACAGGTAGAAT+TGG 0.305603 4.3:-25230747 MS.gene47580:intron
CTGCCTCAACGCCAACTAAT+AGG 0.307928 4.3:-25230194 MS.gene47580:CDS
GACCATCCATTTGTGGATCT+TGG 0.321293 4.3:+25230369 None:intergenic
AGATTCACAGGACTAATTAT+TGG 0.332947 4.3:-25232157 MS.gene47580:CDS
GAATTGGGACATCAGACTTT+GGG 0.338470 4.3:-25230731 MS.gene47580:CDS
TGAGCTAGCCCGCGGAAAAT+AGG 0.340511 4.3:+25230171 None:intergenic
GATGTTTCCTGCAATGGCTT+TGG 0.342344 4.3:-25230525 MS.gene47580:CDS
AATCCATGGTTGACGCTTGC+TGG 0.351834 4.3:+25230298 None:intergenic
GGCTACCAAGATTCAATTGC+TGG 0.362244 4.3:+25232555 None:intergenic
ACTCAGTTGGAATGAGGTTC+AGG 0.363746 4.3:-25232291 MS.gene47580:CDS
AACAAGAAGAAACTTGTATC+TGG 0.365188 4.3:-25232768 MS.gene47580:CDS
TTTGATCCAGGCCATCTAAC+AGG 0.365768 4.3:+25232118 None:intergenic
ACCTCTGTAATTCAGATAAC+TGG 0.374442 4.3:+25230619 None:intergenic
TGGTACACATTCACGCGATT+TGG 0.374841 4.3:-25230130 MS.gene47580:CDS
CAAGGCTCTTTAAGAATTTG+TGG 0.377814 4.3:+25232323 None:intergenic
TTAGATGGCCTGGATCAAAA+TGG 0.391526 4.3:-25232114 MS.gene47580:CDS
TGGAAGCTTCAAGGCTCAAC+AGG 0.392327 4.3:-25230974 MS.gene47580:CDS
AGAAGATGGCGAATTGAGAT+TGG 0.400560 4.3:-25232633 MS.gene47580:CDS
AAAAGTAGCTGCAGAGTGTT+TGG 0.401467 4.3:-25230066 MS.gene47580:CDS
AAGCATTAACTAAGTCTTTG+AGG 0.404732 4.3:+25232534 None:intergenic
ACAGAAAAGGCTTGTCCATA+TGG 0.405325 4.3:+25230447 None:intergenic
GTCAACGAGGCTTGTAGAAA+TGG 0.411503 4.3:-25230426 MS.gene47580:CDS
ACGGCCAGGAATGGAAATTT+CGG 0.412988 4.3:-25232949 MS.gene47580:CDS
GCTTGTAGAAATGGTCGCTT+TGG 0.413112 4.3:-25230417 MS.gene47580:CDS
CGAAGATTGCTTTCCTCCCC+TGG 0.414436 4.3:-25233169 MS.gene47580:intron
AGGGAGGTCCAGGATTTATC+TGG 0.416845 4.3:+25229980 None:intergenic
TTCCACCACCAATAGCTTGA+TGG 0.422972 4.3:-25230916 MS.gene47580:CDS
TTCTGCATCTTTATTTGCAA+TGG 0.425772 4.3:+25230020 None:intergenic
ACTAGTTGCCATCAAGCTAT+TGG 0.429653 4.3:+25230908 None:intergenic
GTTTCCTGTTGAAGCGATCC+CGG 0.430395 4.3:+25230575 None:intergenic
GAAGACGAAACACCTTCTTC+TGG 0.432653 4.3:-25234373 MS.gene47580:CDS
TCTGCATCTTTATTTGCAAT+GGG 0.433846 4.3:+25230021 None:intergenic
GTGGATCCTGTTAGATGGCC+TGG 0.434675 4.3:-25232124 MS.gene47580:CDS
CTTGTGAAGGAGGGAGGTCC+AGG 0.435662 4.3:+25229970 None:intergenic
TATGCCGAAATTTCCATTCC+TGG 0.436283 4.3:+25232945 None:intergenic
AGGATGAATATTGCTTACTT+TGG 0.437294 4.3:+25229882 None:intergenic
CATAGAACGAACCTCTTTGA+AGG 0.445028 4.3:+25230241 None:intergenic
TTGAGGGAAGGGGTAATTGA+TGG 0.447627 4.3:-25233321 MS.gene47580:CDS
CTTGCAAGACCTTCTGGAAT+CGG 0.448674 4.3:+25230493 None:intergenic
AATTCTGATGTTTCCTGCAA+TGG 0.460396 4.3:-25230531 MS.gene47580:CDS
AGATTCACCAAAGCCATTGC+AGG 0.460830 4.3:+25230518 None:intergenic
CTGAGAAGACCATCCATTTG+TGG 0.461406 4.3:+25230362 None:intergenic
GGTGTATTGTCAGGTGTTGT+TGG 0.462932 4.3:-25233719 MS.gene47580:CDS
AGAATTGGGACATCAGACTT+TGG 0.468381 4.3:-25230732 MS.gene47580:CDS
GTCGTAAGCAAATGCCTTCG+TGG 0.468733 4.3:+25232810 None:intergenic
CTTGATTATTCTTACTCAGT+TGG 0.470525 4.3:-25232304 MS.gene47580:CDS
AAACATCAGAATTCATTTGT+GGG 0.471506 4.3:+25230541 None:intergenic
CATGAAGACATGAACTCGTT+TGG 0.472406 4.3:-25230150 MS.gene47580:CDS
TCCGGCCAGCAATTGAATCT+TGG 0.475283 4.3:-25232560 MS.gene47580:CDS
TATCCCGGGATCGCTTCAAC+AGG 0.477815 4.3:-25230579 MS.gene47580:CDS
TCATCTTCAAGTACAAGTAT+AGG 0.478694 4.3:-25234349 MS.gene47580:intron
TTCCTCTAACAGGTAGAATT+GGG 0.480587 4.3:-25230746 MS.gene47580:intron
CTGATGTGGATCCTGTTAGA+TGG 0.481986 4.3:-25232129 MS.gene47580:CDS
TTTCCTGTTGAAGCGATCCC+GGG 0.482214 4.3:+25230576 None:intergenic
AGTTTGAAGAGGACCAAGAC+TGG 0.486097 4.3:-25230888 MS.gene47580:CDS
ACAAGCCTCGTTGACAGAAA+AGG 0.486107 4.3:+25230434 None:intergenic
AATTGAGACATACTGGGAAC+CGG 0.486594 4.3:+25230840 None:intergenic
GAAACATCAGAATTCATTTG+TGG 0.487206 4.3:+25230540 None:intergenic
TTACTTCCCTCAAGGACACT+TGG 0.489214 4.3:-25234218 MS.gene47580:intron
GGCAAAGGACCTGCACGGCC+AGG 0.491321 4.3:-25232963 MS.gene47580:CDS
ATACTTCCTAGCCAACCATA+TGG 0.494849 4.3:-25230462 MS.gene47580:CDS
CGAAGGCATTTGCTTACGAC+TGG 0.494928 4.3:-25232807 MS.gene47580:CDS
CTCATCATTTCAGGTAAGGT+GGG 0.495255 4.3:-25231003 MS.gene47580:intron
GATCCCGGGATAGGTTGAAC+CGG 0.495352 4.3:+25230590 None:intergenic
TTATAATAACAAAATTAATC+CGG 0.498479 4.3:-25230277 MS.gene47580:CDS
GTCACTTGCCAGATAAATCC+TGG 0.499622 4.3:-25229988 MS.gene47580:CDS
TGTTGAAGCGATCCCGGGAT+AGG 0.500591 4.3:+25230581 None:intergenic
GGGATGACATGGAAGCTTCA+AGG 0.501986 4.3:-25230983 MS.gene47580:CDS
TGATGAAGGCAATCCAGTCT+TGG 0.502883 4.3:+25230875 None:intergenic
ATTTGCAATGGGAGCACCCT+CGG 0.505296 4.3:+25230032 None:intergenic
ATTTCCATTCCTGGCCGTGC+AGG 0.505326 4.3:+25232954 None:intergenic
TTGCTCCGAAGTGAATGCCT+TGG 0.507472 4.3:+25229925 None:intergenic
CCATGGGAGATTGAGCCCTC+AGG 0.508458 4.3:-25230945 MS.gene47580:CDS
CAACTGAGTAAGAATAATCA+AGG 0.509968 4.3:+25232305 None:intergenic
TGAAGGACGTTATCCTCCAC+CGG 0.511378 4.3:+25230258 None:intergenic
GAAGATGGCGAATTGAGATT+GGG 0.515498 4.3:-25232632 MS.gene47580:CDS
AGGACCTGCACGGCCAGGAA+TGG 0.516509 4.3:-25232958 MS.gene47580:CDS
ATTCTTACTCAGTTGGAATG+AGG 0.516705 4.3:-25232297 MS.gene47580:CDS
TGCCATCAAGCTATTGGTGG+TGG 0.517515 4.3:+25230914 None:intergenic
GAACGATGAGGTGTATTGTC+AGG 0.518104 4.3:-25233728 MS.gene47580:CDS
TTCACAAGAGCTTGTGGCAA+AGG 0.520697 4.3:-25232978 MS.gene47580:CDS
TATGCTTCTGAAATGAAAGA+TGG 0.522167 4.3:-25230222 MS.gene47580:CDS
CAGGGGAGGAAAGCAATCTT+CGG 0.526886 4.3:+25233170 None:intergenic
ACAATTGACAGAGGAGAAGA+TGG 0.526995 4.3:-25232647 MS.gene47580:intron
GCAAGTGCAACAAAAGTTGA+GGG 0.527829 4.3:-25233337 MS.gene47580:CDS
TCTCATCATTTCAGGTAAGG+TGG 0.529211 4.3:-25231004 MS.gene47580:intron
CATTTGTGGATCTTGGCACC+TGG 0.529771 4.3:+25230376 None:intergenic
TGCTGGTACATCAACACTGA+TGG 0.534225 4.3:+25230315 None:intergenic
TATCCCGGTTCAACCTATCC+CGG 0.534428 4.3:-25230594 MS.gene47580:CDS
GCTTGTCCATATGGTTGGCT+AGG 0.536411 4.3:+25230456 None:intergenic
GGCATTTGCTTACGACTGGA+TGG 0.537671 4.3:-25232803 MS.gene47580:CDS
GAGATGCTGTTCTGTTCCTC+CGG 0.539610 4.3:-25232746 MS.gene47580:intron
AATTGAGATTGGGAATCCGC+AGG 0.541630 4.3:-25232622 MS.gene47580:CDS
CGATTCCAGAAGGTCTTGCA+AGG 0.542383 4.3:-25230492 MS.gene47580:CDS
AGCAAGTGCAACAAAAGTTG+AGG 0.542657 4.3:-25233338 MS.gene47580:CDS
TTCAACATGTCTTGTGAAGG+AGG 0.544875 4.3:+25229960 None:intergenic
GCTCAACAGGGTTTCACCAT+GGG 0.545772 4.3:-25230961 MS.gene47580:CDS
GAATTACAGAGGTGCTATCC+CGG 0.550009 4.3:-25230609 MS.gene47580:CDS
GCTTCTGATACTAGCACTCA+TGG 0.551937 4.3:-25233219 MS.gene47580:CDS
AAAAGGCTTGTCCATATGGT+TGG 0.552881 4.3:+25230451 None:intergenic
CGGAAAATAGGCCTATTAGT+TGG 0.553897 4.3:+25230183 None:intergenic
ACAGAGAAGCGGTCAAGAGT+TGG 0.561254 4.3:-25230100 MS.gene47580:CDS
CTCTTTAAGAATTTGTGGAT+AGG 0.561415 4.3:+25232328 None:intergenic
TGCAACAAAAGTTGAGGGAA+GGG 0.561765 4.3:-25233332 MS.gene47580:CDS
TAAACGCAGGGCAGCCACGA+AGG 0.562505 4.3:-25232824 MS.gene47580:intron
TCAATCCAAGGCATTCACTT+CGG 0.563879 4.3:-25229930 MS.gene47580:CDS
CTTGAAGATGAACCAGAAGA+AGG 0.564461 4.3:+25234361 None:intergenic
ATCTGGCAAGTGACTGCAGA+GGG 0.565131 4.3:+25229997 None:intergenic
ATCCCGGTTCAACCTATCCC+GGG 0.568291 4.3:-25230593 MS.gene47580:CDS
TTGAAGATGATTTCAATCCA+AGG 0.568841 4.3:-25229942 MS.gene47580:CDS
TAAGAGTCTTGCAGAACATG+TGG 0.569128 4.3:+25233244 None:intergenic
TTTGCCACAAGCTCTTGTGA+AGG 0.570311 4.3:+25232980 None:intergenic
TCAGGTAAGGTGGGATGACA+TGG 0.571901 4.3:-25230994 MS.gene47580:intron
CTGAAGATGCTGCAGAGCGA+AGG 0.573424 4.3:-25232255 MS.gene47580:intron
ACCAAGATTCAATTGCTGGC+CGG 0.574219 4.3:+25232559 None:intergenic
CAGGTGCCAAGATCCACAAA+TGG 0.574271 4.3:-25230375 MS.gene47580:CDS
ATCTTCAACATGTCTTGTGA+AGG 0.575530 4.3:+25229957 None:intergenic
GGAAACTCTAGCTTTGATGA+AGG 0.575774 4.3:+25230861 None:intergenic
TCGATAATCATGTCTCTCAC+AGG 0.575881 4.3:+25229862 None:intergenic
TAACAAAATTAATCCGGTGG+AGG 0.578416 4.3:-25230271 MS.gene47580:CDS
AAGGCATTCACTTCGGAGCA+AGG 0.579813 4.3:-25229923 MS.gene47580:CDS
GTAATTGATGGTGATGGTGA+TGG 0.584113 4.3:-25233309 MS.gene47580:CDS
CCTGAGGGCTCAATCTCCCA+TGG 0.586174 4.3:+25230945 None:intergenic
TGGATTGTAGTGTATGCTAA+AGG 0.587455 4.3:+25232496 None:intergenic
GTGCAACAAAAGTTGAGGGA+AGG 0.588950 4.3:-25233333 MS.gene47580:CDS
GCAACAAAAGTTGAGGGAAG+GGG 0.589038 4.3:-25233331 MS.gene47580:CDS
GGAATCACTGCGGTTCCAGA+AGG 0.590895 4.3:-25230709 MS.gene47580:CDS
GGCTCAACAGGGTTTCACCA+TGG 0.590908 4.3:-25230962 MS.gene47580:CDS
GATGGTGATGGTGATGGTGA+AGG 0.591326 4.3:-25233303 MS.gene47580:CDS
AGTTGCCATCAAGCTATTGG+TGG 0.596259 4.3:+25230911 None:intergenic
TAATAACAAAATTAATCCGG+TGG 0.596313 4.3:-25230274 MS.gene47580:CDS
AATTATTGGAATTACTGATG+TGG 0.597448 4.3:-25232143 MS.gene47580:CDS
AAGAGTCTTGCAGAACATGT+GGG 0.599354 4.3:+25233245 None:intergenic
TGAATCTTTCCGATTCCAGA+AGG 0.600033 4.3:-25230502 MS.gene47580:CDS
CAATCTTCGGCTGCTCGACG+AGG 0.600698 4.3:+25233183 None:intergenic
TTAGCATACACTACAATCCA+AGG 0.602455 4.3:-25232493 MS.gene47580:intron
ACACGACAGAACACATGAGA+AGG 0.606315 4.3:+25234154 None:intergenic
GTATTTGTGCAGGCTGAGGA+AGG 0.606600 4.3:-25233751 MS.gene47580:intron
TGATGGCAACTAGTTTGAAG+AGG 0.608820 4.3:-25230899 MS.gene47580:CDS
TGCCAAGATCCACAAATGGA+TGG 0.610246 4.3:-25230371 MS.gene47580:CDS
ATCCCGGGATAGGTTGAACC+GGG 0.611784 4.3:+25230591 None:intergenic
CGGTTCCAGAAGGTCTTGCA+AGG 0.612560 4.3:-25230699 MS.gene47580:CDS
AGGCCTATTAGTTGGCGTTG+AGG 0.614103 4.3:+25230191 None:intergenic
AATTGGGACATCAGACTTTG+GGG 0.617990 4.3:-25230730 MS.gene47580:CDS
AAGACCTTCACAAGAGCTTG+TGG 0.618685 4.3:-25232984 MS.gene47580:CDS
ATTGAGATTGGGAATCCGCA+GGG 0.619618 4.3:-25232621 MS.gene47580:CDS
ACATGTCTTGTGAAGGAGGG+AGG 0.622871 4.3:+25229964 None:intergenic
TCAACATGTCTTGTGAAGGA+GGG 0.630253 4.3:+25229961 None:intergenic
TTGTGGATCTTGGCACCTGG+TGG 0.639384 4.3:+25230379 None:intergenic
GGAAGCTTCAAGGCTCAACA+GGG 0.640992 4.3:-25230973 MS.gene47580:CDS
AAATTTCGGCATATATACAG+AGG 0.647388 4.3:-25232935 MS.gene47580:intron
TTGGTTGCACTACAGAGAAG+CGG 0.648720 4.3:-25230111 MS.gene47580:CDS
TCTGTAATTCAGATAACTGG+TGG 0.650832 4.3:+25230622 None:intergenic
GAAGGGGTAATTGATGGTGA+TGG 0.656136 4.3:-25233315 MS.gene47580:CDS
GTTGTTGGTTCCTGAAAGTG+AGG 0.660598 4.3:-25233704 MS.gene47580:intron
ATCAAAATGGAAATGCCTAG+TGG 0.661824 4.3:-25232101 MS.gene47580:intron
GTACCAGCAAGCGTCAACCA+TGG 0.662349 4.3:-25230301 MS.gene47580:CDS
GATTGATCTCAACACTACTG+AGG 0.665345 4.3:-25234395 MS.gene47580:CDS
GAGGATAACGTCCTTCAAAG+AGG 0.666492 4.3:-25230252 MS.gene47580:CDS
CTCAAGGTAAGTACCAGGGG+AGG 0.666901 4.3:+25233156 None:intergenic
AGAGTCTTGCAGAACATGTG+GGG 0.670484 4.3:+25233246 None:intergenic
TGATGGTGATGGTGAAGGCG+AGG 0.675186 4.3:-25233298 MS.gene47580:CDS
GGTGGTGGAAGATGAGCCTG+AGG 0.683472 4.3:+25230929 None:intergenic
TATTTGTGCAGGCTGAGGAA+GGG 0.684256 4.3:-25233750 MS.gene47580:intron
TGTCTTCATGAGCTAGCCCG+CGG 0.693463 4.3:+25230163 None:intergenic
TATCTGGCAAGTGACTGCAG+AGG 0.699849 4.3:+25229996 None:intergenic
ACCAGTTATCTGAATTACAG+AGG 0.702085 4.3:-25230620 MS.gene47580:CDS
CTTGTGGCAAAGGACCTGCA+CGG 0.708055 4.3:-25232968 MS.gene47580:CDS
GGCTGAGGAAGGGAACGATG+AGG 0.721717 4.3:-25233740 MS.gene47580:CDS
CAGACTTTGGGGAATCACTG+CGG 0.730858 4.3:-25230719 MS.gene47580:CDS
TCTGATACTAGCACTCATGG+TGG 0.734262 4.3:-25233216 MS.gene47580:CDS
GTGGTGGAAGATGAGCCTGA+GGG 0.740646 4.3:+25230930 None:intergenic
GCATTCACTTCGGAGCAAGG+CGG 0.745305 4.3:-25229920 MS.gene47580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATAACAAAATTAATC+CGG - chr4.3:25233975-25233994 MS.gene47580:intron 10.0%
!!! TCTCAATTTATTTATTTTTT+TGG - chr4.3:25233427-25233446 MS.gene47580:intron 10.0%
!! TCTACTAATTAATCTATAAA+AGG - chr4.3:25233090-25233109 MS.gene47580:intron 15.0%
!! TTTATTGAAAATAGAATATC+AGG + chr4.3:25232371-25232390 None:intergenic 15.0%
!!! AATTTTGTTATTATAATCCA+TGG + chr4.3:25233971-25233990 None:intergenic 15.0%
!!! ACTTTTTTTCTTCTAAAATT+TGG - chr4.3:25230244-25230263 MS.gene47580:CDS 15.0%
!! AAAACTTTCAAAATTGAACA+AGG + chr4.3:25231145-25231164 None:intergenic 20.0%
!! AAACAATATGAAGTGAAATA+TGG + chr4.3:25232978-25232997 None:intergenic 20.0%
!! AAACTTTCAAAATTGAACAA+GGG + chr4.3:25231144-25231163 None:intergenic 20.0%
!! AAATAATTCCATTATTGAAC+TGG - chr4.3:25232583-25232602 MS.gene47580:CDS 20.0%
!! ACTTAACATAGGAAAAAATT+TGG - chr4.3:25232937-25232956 MS.gene47580:CDS 20.0%
!! ATAAATAAATTGAGACATAC+TGG + chr4.3:25233422-25233441 None:intergenic 20.0%
!! ATATTATCCGAAAAAGATAA+CGG + chr4.3:25230077-25230096 None:intergenic 20.0%
!! ATCATTTATATGCTTGAAAT+TGG - chr4.3:25232213-25232232 MS.gene47580:intron 20.0%
!! GATTAAGATTCTCTTAAATA+AGG + chr4.3:25232057-25232076 None:intergenic 20.0%
!! TAAATAAATTGAGACATACT+GGG + chr4.3:25233421-25233440 None:intergenic 20.0%
!! TCATTTATATGCTTGAAATT+GGG - chr4.3:25232214-25232233 MS.gene47580:intron 20.0%
!! TTCATTATAATCATCTCAAA+TGG + chr4.3:25230707-25230726 None:intergenic 20.0%
!!! AAACTTACCTTATTTACTAT+TGG + chr4.3:25232821-25232840 None:intergenic 20.0%
!!! ACTTGTTTCTCATTTTTATA+AGG - chr4.3:25231346-25231365 MS.gene47580:intron 20.0%
!!! CTAAAATTTGGTTTCTTTTT+GGG - chr4.3:25230256-25230275 MS.gene47580:CDS 20.0%
!!! TCTAAAATTTGGTTTCTTTT+TGG - chr4.3:25230255-25230274 MS.gene47580:CDS 20.0%
!!! TTGCATTTTTTTTTTGTCAA+TGG - chr4.3:25232301-25232320 MS.gene47580:CDS 20.0%
!!! TTTCAATAAAATTTTGCAGA+CGG - chr4.3:25232381-25232400 MS.gene47580:intron 20.0%
! AAACATCAGAATTCATTTGT+GGG + chr4.3:25233714-25233733 None:intergenic 25.0%
! AACATTTACATAGAGTAACA+AGG - chr4.3:25231556-25231575 MS.gene47580:intron 25.0%
! AATTATTGGAATTACTGATG+TGG - chr4.3:25232109-25232128 MS.gene47580:CDS 25.0%
! CACTAATATGTATAGTTAGA+TGG + chr4.3:25232487-25232506 None:intergenic 25.0%
! CAGATTGATAAATGTAATGA+TGG + chr4.3:25232869-25232888 None:intergenic 25.0%
! CAGGCTATATAATAAAATGA+CGG + chr4.3:25232425-25232444 None:intergenic 25.0%
! CATCTAACTATACATATTAG+TGG - chr4.3:25232485-25232504 MS.gene47580:intron 25.0%
! CATTACACCAATAGTAAATA+AGG - chr4.3:25232811-25232830 MS.gene47580:CDS 25.0%
! CTTATATATGATAAATCCAC+AGG + chr4.3:25232280-25232299 None:intergenic 25.0%
! GAAAATTGTAGAAACTTACA+TGG - chr4.3:25232619-25232638 MS.gene47580:CDS 25.0%
! TAATAACAAAATTAATCCGG+TGG - chr4.3:25233978-25233997 MS.gene47580:intron 25.0%
! TAGAATACCAATTGATTGTT+GGG - chr4.3:25231385-25231404 MS.gene47580:intron 25.0%
! TATGAAGTGAAATATGGTAT+TGG + chr4.3:25232972-25232991 None:intergenic 25.0%
! TGTACACTCAATTAATTAGA+GGG + chr4.3:25232779-25232798 None:intergenic 25.0%
! TGTCGTGAAATATAAAATGT+CGG + chr4.3:25231588-25231607 None:intergenic 25.0%
!! AATCGAATGTTGTCTTTTAT+TGG - chr4.3:25230175-25230194 MS.gene47580:CDS 25.0%
!! AATTAATTAGAGGGTACAAT+TGG + chr4.3:25232770-25232789 None:intergenic 25.0%
!! TGATTTTCCGTTATCTTTTT+CGG - chr4.3:25230067-25230086 MS.gene47580:CDS 25.0%
!! TTACTATTGGTGTAATGTTT+TGG + chr4.3:25232808-25232827 None:intergenic 25.0%
!! TTACTATTTCTTTGTAGGAT+TGG - chr4.3:25231882-25231901 MS.gene47580:intron 25.0%
!!! AACTGATTTTTGAATGAACT+TGG - chr4.3:25230880-25230899 MS.gene47580:CDS 25.0%
!!! AAGTGACACTTATTTTGAAA+CGG + chr4.3:25232679-25232698 None:intergenic 25.0%
!!! TACAATCCAAGGTATTTTTA+TGG - chr4.3:25231770-25231789 MS.gene47580:intron 25.0%
!!! TGCTTTTACTATTTCTTTGT+AGG - chr4.3:25231877-25231896 MS.gene47580:intron 25.0%
!!! TGTTTTGATTGATAGAATGT+AGG + chr4.3:25231540-25231559 None:intergenic 25.0%
!!! TTTTTGAGTGAAACTTGTTA+TGG - chr4.3:25230437-25230456 MS.gene47580:CDS 25.0%
!!! TTTTTTAGTAGTTCGTGAAA+GGG - chr4.3:25231808-25231827 MS.gene47580:intron 25.0%
!!! TTTTTTTTTTGTCAATGGTG+TGG - chr4.3:25232306-25232325 MS.gene47580:CDS 25.0%
AAATTTCGGCATATATACAG+AGG - chr4.3:25231317-25231336 MS.gene47580:intron 30.0%
AACAAGAAGAAACTTGTATC+TGG - chr4.3:25231484-25231503 MS.gene47580:intron 30.0%
AAGCATTAACTAAGTCTTTG+AGG + chr4.3:25231721-25231740 None:intergenic 30.0%
AATAGTCCTTCTCATTCTAA+AGG + chr4.3:25232555-25232574 None:intergenic 30.0%
AGATTCACAGGACTAATTAT+TGG - chr4.3:25232095-25232114 MS.gene47580:intron 30.0%
AGGATGAATATTGCTTACTT+TGG + chr4.3:25234373-25234392 None:intergenic 30.0%
ATACAAACCCAACAATCAAT+TGG + chr4.3:25231395-25231414 None:intergenic 30.0%
ATCACAAACAAGTAGTAATG+AGG + chr4.3:25233185-25233204 None:intergenic 30.0%
ATCTATGTTAGTGTCAAGTT+TGG - chr4.3:25230329-25230348 MS.gene47580:CDS 30.0%
ATTGACTGATTGCAATCAAA+TGG - chr4.3:25233221-25233240 MS.gene47580:CDS 30.0%
ATTTAATCCACTTCCTCTTT+AGG - chr4.3:25231232-25231251 MS.gene47580:intron 30.0%
CAACTGAGTAAGAATAATCA+AGG + chr4.3:25231950-25231969 None:intergenic 30.0%
CAAGTAGTAATGAGGTTAAT+AGG + chr4.3:25233177-25233196 None:intergenic 30.0%
CCTAATAAACGAAGTTAGAA+AGG + chr4.3:25232190-25232209 None:intergenic 30.0%
CCTTTCTAACTTCGTTTATT+AGG - chr4.3:25232187-25232206 MS.gene47580:intron 30.0%
CTGTGAATCTGCATAATAAA+AGG + chr4.3:25232085-25232104 None:intergenic 30.0%
CTTGATTATTCTTACTCAGT+TGG - chr4.3:25231948-25231967 MS.gene47580:intron 30.0%
GAAACATCAGAATTCATTTG+TGG + chr4.3:25233715-25233734 None:intergenic 30.0%
GAATAGCCATAAAAATACCT+TGG + chr4.3:25231779-25231798 None:intergenic 30.0%
GTAGAATACCAATTGATTGT+TGG - chr4.3:25231384-25231403 MS.gene47580:intron 30.0%
GTGTACACTCAATTAATTAG+AGG + chr4.3:25232780-25232799 None:intergenic 30.0%
TATAAGGACAAGAACATTTC+AGG - chr4.3:25231362-25231381 MS.gene47580:intron 30.0%
TCATCTTCAAGTACAAGTAT+AGG - chr4.3:25229903-25229922 MS.gene47580:CDS 30.0%
TTATTATATAGCCTGCACTT+AGG - chr4.3:25232430-25232449 MS.gene47580:intron 30.0%
TTGAAGATGATTTCAATCCA+AGG - chr4.3:25234310-25234329 MS.gene47580:intron 30.0%
! AATGTTGTCTTTTATTGGTC+GGG - chr4.3:25230180-25230199 MS.gene47580:CDS 30.0%
! AGTAACTTTTCATCTATCTC+CGG - chr4.3:25231674-25231693 MS.gene47580:intron 30.0%
! ATTTCTCATCATTTCAGGTA+AGG - chr4.3:25233245-25233264 MS.gene47580:CDS 30.0%
! CTCTTTAAGAATTTGTGGAT+AGG + chr4.3:25231927-25231946 None:intergenic 30.0%
! CTTGAAGTAACTCAAGTTTT+TGG - chr4.3:25233025-25233044 MS.gene47580:intron 30.0%
! CTTTTATTATGCAGATTCAC+AGG - chr4.3:25232083-25232102 MS.gene47580:intron 30.0%
! GAATGTTGTCTTTTATTGGT+CGG - chr4.3:25230179-25230198 MS.gene47580:CDS 30.0%
! GATTGTTGGGTTTGTATTTT+CGG - chr4.3:25231398-25231417 MS.gene47580:intron 30.0%
! TCTGCATCTTTATTTGCAAT+GGG + chr4.3:25234234-25234253 None:intergenic 30.0%
! TTCTGCATCTTTATTTGCAA+TGG + chr4.3:25234235-25234254 None:intergenic 30.0%
! TTGCAAGGTCAAGAAATTTT+AGG - chr4.3:25233568-25233587 MS.gene47580:intron 30.0%
!! AAGGGAGTATTACTTAACAT+AGG - chr4.3:25232926-25232945 MS.gene47580:intron 30.0%
!! TATGCTTCTGAAATGAAAGA+TGG - chr4.3:25234030-25234049 MS.gene47580:intron 30.0%
!! TGTATTCCTTTAGAATGAGA+AGG - chr4.3:25232546-25232565 MS.gene47580:CDS 30.0%
!! TTCAAAATGAGTGTCGTTTA+AGG + chr4.3:25232902-25232921 None:intergenic 30.0%
!!! ACACTCATTTTGAAACAGAA+GGG - chr4.3:25232908-25232927 MS.gene47580:intron 30.0%
!!! CTTTTTGGGTTTTTACATGT+GGG - chr4.3:25230270-25230289 MS.gene47580:CDS 30.0%
!!! GTTTTTTAGTAGTTCGTGAA+AGG - chr4.3:25231807-25231826 MS.gene47580:intron 30.0%
!!! TCTTTTTGGGTTTTTACATG+TGG - chr4.3:25230269-25230288 MS.gene47580:CDS 30.0%
!!! TTTGGTTTTTCATTAACCGA+GGG - chr4.3:25234204-25234223 MS.gene47580:CDS 30.0%
!!! TTTTTGGTTCAGTTCTGTTT+TGG - chr4.3:25230599-25230618 MS.gene47580:CDS 30.0%
AATTCTACCTGTTAGAGGAA+TGG + chr4.3:25233506-25233525 None:intergenic 35.0%
AATTCTGATGTTTCCTGCAA+TGG - chr4.3:25233721-25233740 MS.gene47580:CDS 35.0%
ACAACAACACTTCCTTTCTT+TGG + chr4.3:25230014-25230033 None:intergenic 35.0%
ACCAGTTATCTGAATTACAG+AGG - chr4.3:25233632-25233651 MS.gene47580:intron 35.0%
ACCTCTGTAATTCAGATAAC+TGG + chr4.3:25233636-25233655 None:intergenic 35.0%
AGTACAAGTATAGGTAGTGT+TGG - chr4.3:25229912-25229931 MS.gene47580:CDS 35.0%
ATCAAAATGGAAATGCCTAG+TGG - chr4.3:25232151-25232170 MS.gene47580:CDS 35.0%
ATCTTCAACATGTCTTGTGA+AGG + chr4.3:25234298-25234317 None:intergenic 35.0%
ATGATCTCTTTGCCAAAGAA+AGG - chr4.3:25229999-25230018 MS.gene47580:CDS 35.0%
ATGGCATTTCTCATCATTTC+AGG - chr4.3:25233240-25233259 MS.gene47580:CDS 35.0%
ATTCCTCTAACAGGTAGAAT+TGG - chr4.3:25233505-25233524 MS.gene47580:intron 35.0%
ATTCTTACTCAGTTGGAATG+AGG - chr4.3:25231955-25231974 MS.gene47580:intron 35.0%
ATTTCAAAGTAGCACACTCA+AGG + chr4.3:25231115-25231134 None:intergenic 35.0%
CATAGAATGTGTATTTGTGC+AGG - chr4.3:25230491-25230510 MS.gene47580:CDS 35.0%
CCATAAAGCCAGTTCAATAA+TGG + chr4.3:25232594-25232613 None:intergenic 35.0%
CCATAGTACTAAGTAGCTAT+AGG - chr4.3:25230777-25230796 MS.gene47580:intron 35.0%
CCTATAGCTACTTAGTACTA+TGG + chr4.3:25230780-25230799 None:intergenic 35.0%
CGTAAAGTATAGACAATGTC+AGG + chr4.3:25233003-25233022 None:intergenic 35.0%
GATTTGTACGCTGAAAAGAA+GGG + chr4.3:25230159-25230178 None:intergenic 35.0%
GTTAAGTGTCATGTTACCAA+AGG - chr4.3:25230745-25230764 MS.gene47580:intron 35.0%
TAACAAAATTAATCCGGTGG+AGG - chr4.3:25233981-25234000 MS.gene47580:intron 35.0%
TACTCAGTGTCTAAGTCTTA+GGG - chr4.3:25230670-25230689 MS.gene47580:CDS 35.0%
TAGAATGTAGGTCATCTTAC+CGG + chr4.3:25231528-25231547 None:intergenic 35.0%
TATAGTTAGATGGAAGACAG+AGG + chr4.3:25232477-25232496 None:intergenic 35.0%
TATGCTTGAAATTGGGTGTT+AGG - chr4.3:25232221-25232240 MS.gene47580:intron 35.0%
TATTTCACGACAATTGACAG+AGG - chr4.3:25231596-25231615 MS.gene47580:intron 35.0%
TCTGTAATTCAGATAACTGG+TGG + chr4.3:25233633-25233652 None:intergenic 35.0%
TGCTCAATGAGGAAATTGAT+GGG - chr4.3:25230300-25230319 MS.gene47580:CDS 35.0%
TGGATTGTAGTGTATGCTAA+AGG + chr4.3:25231759-25231778 None:intergenic 35.0%
TGTTGAGAGTAATCCTAAAG+AGG + chr4.3:25231248-25231267 None:intergenic 35.0%
TTACTCAGTGTCTAAGTCTT+AGG - chr4.3:25230669-25230688 MS.gene47580:CDS 35.0%
TTAGCATACACTACAATCCA+AGG - chr4.3:25231759-25231778 MS.gene47580:intron 35.0%
TTCATCAAAGCTAGAGTTTC+CGG - chr4.3:25233393-25233412 MS.gene47580:intron 35.0%
TTCCTCTAACAGGTAGAATT+GGG - chr4.3:25233506-25233525 MS.gene47580:intron 35.0%
TTCGGTTTCTAATAAACGCA+GGG - chr4.3:25231416-25231435 MS.gene47580:intron 35.0%
TTCTTTGGCAAAGAGATCAT+AGG + chr4.3:25229999-25230018 None:intergenic 35.0%
TTGCTCAATGAGGAAATTGA+TGG - chr4.3:25230299-25230318 MS.gene47580:CDS 35.0%
TTTCGGTTTCTAATAAACGC+AGG - chr4.3:25231415-25231434 MS.gene47580:intron 35.0%
! CAAGGCTCTTTAAGAATTTG+TGG + chr4.3:25231932-25231951 None:intergenic 35.0%
!! CCATTATTGAACTGGCTTTA+TGG - chr4.3:25232591-25232610 MS.gene47580:CDS 35.0%
!! GAGTGAAACTTGTTATGGTT+TGG - chr4.3:25230442-25230461 MS.gene47580:CDS 35.0%
!! GTTGCACTTGCTATAAAAAG+TGG + chr4.3:25230906-25230925 None:intergenic 35.0%
!! TTCTGGTTCTTCTGTTTGTT+TGG - chr4.3:25229950-25229969 MS.gene47580:CDS 35.0%
!! TTGATTGCATTTGCTGTTCA+TGG - chr4.3:25233136-25233155 MS.gene47580:intron 35.0%
!!! GACACTCATTTTGAAACAGA+AGG - chr4.3:25232907-25232926 MS.gene47580:intron 35.0%
!!! GACACTTATTTTGAAACGGA+GGG + chr4.3:25232675-25232694 None:intergenic 35.0%
!!! GTTTGGTTTTTCATTAACCG+AGG - chr4.3:25234203-25234222 MS.gene47580:CDS 35.0%
!!! TGACACTTATTTTGAAACGG+AGG + chr4.3:25232676-25232695 None:intergenic 35.0%
AAAAGGCTTGTCCATATGGT+TGG + chr4.3:25233804-25233823 None:intergenic 40.0%
AAGAGTCTTGCAGAACATGT+GGG + chr4.3:25231010-25231029 None:intergenic 40.0%
AATTGAGACATACTGGGAAC+CGG + chr4.3:25233415-25233434 None:intergenic 40.0%
AATTGCTCCATTCCTCTAAC+AGG - chr4.3:25233496-25233515 MS.gene47580:intron 40.0%
AATTGGGACATCAGACTTTG+GGG - chr4.3:25233522-25233541 MS.gene47580:intron 40.0%
ACAATTGACAGAGGAGAAGA+TGG - chr4.3:25231605-25231624 MS.gene47580:intron 40.0%
ACAGAAAAGGCTTGTCCATA+TGG + chr4.3:25233808-25233827 None:intergenic 40.0%
ACAGTAGTACAGAACTCCTA+CGG + chr4.3:25232524-25232543 None:intergenic 40.0%
ACTAGTTGCCATCAAGCTAT+TGG + chr4.3:25233347-25233366 None:intergenic 40.0%
ACTATGGTCTATGACTCCTT+TGG + chr4.3:25230764-25230783 None:intergenic 40.0%
ACTCAGTGTCTAAGTCTTAG+GGG - chr4.3:25230671-25230690 MS.gene47580:CDS 40.0%
AGAAGATGGCGAATTGAGAT+TGG - chr4.3:25231619-25231638 MS.gene47580:intron 40.0%
AGAATTGGGACATCAGACTT+TGG - chr4.3:25233520-25233539 MS.gene47580:intron 40.0%
AGCAAGTGCAACAAAAGTTG+AGG - chr4.3:25230914-25230933 MS.gene47580:CDS 40.0%
ATACTTCCTAGCCAACCATA+TGG - chr4.3:25233790-25233809 MS.gene47580:intron 40.0%
CAATGACGTTTCATTGCATG+AGG + chr4.3:25233473-25233492 None:intergenic 40.0%
CATAGAACGAACCTCTTTGA+AGG + chr4.3:25234014-25234033 None:intergenic 40.0%
CATGAAGACATGAACTCGTT+TGG - chr4.3:25234102-25234121 MS.gene47580:intron 40.0%
CGATTTGTACGCTGAAAAGA+AGG + chr4.3:25230160-25230179 None:intergenic 40.0%
CGGAAAATAGGCCTATTAGT+TGG + chr4.3:25234072-25234091 None:intergenic 40.0%
CTTGAAGATGAACCAGAAGA+AGG + chr4.3:25229894-25229913 None:intergenic 40.0%
GAAGATGGCGAATTGAGATT+GGG - chr4.3:25231620-25231639 MS.gene47580:intron 40.0%
GAATTGGGACATCAGACTTT+GGG - chr4.3:25233521-25233540 MS.gene47580:intron 40.0%
GAGTAATCCTAAAGAGGAAG+TGG + chr4.3:25231242-25231261 None:intergenic 40.0%
GATTGATCTCAACACTACTG+AGG - chr4.3:25229857-25229876 MS.gene47580:CDS 40.0%
GCAAGTGCAACAAAAGTTGA+GGG - chr4.3:25230915-25230934 MS.gene47580:CDS 40.0%
GTAGCACTCTAGTGTTCAAA+AGG + chr4.3:25230833-25230852 None:intergenic 40.0%
GTTAGTGTCAAGTTTGGCAT+AGG - chr4.3:25230335-25230354 MS.gene47580:CDS 40.0%
TAAGAGTCTTGCAGAACATG+TGG + chr4.3:25231011-25231030 None:intergenic 40.0%
TATGCCGAAATTTCCATTCC+TGG + chr4.3:25231310-25231329 None:intergenic 40.0%
TCAACATGTCTTGTGAAGGA+GGG + chr4.3:25234294-25234313 None:intergenic 40.0%
TCGATAATCATGTCTCTCAC+AGG + chr4.3:25234393-25234412 None:intergenic 40.0%
TCTTCAAACATGCACACGAA+TGG + chr4.3:25233116-25233135 None:intergenic 40.0%
TGAAATTGGGTGTTAGGAGA+TGG - chr4.3:25232227-25232246 MS.gene47580:intron 40.0%
TGAATCTTTCCGATTCCAGA+AGG - chr4.3:25233750-25233769 MS.gene47580:intron 40.0%
TGCAACAAAAGTTGAGGGAA+GGG - chr4.3:25230920-25230939 MS.gene47580:CDS 40.0%
TTAGATGGCCTGGATCAAAA+TGG - chr4.3:25232138-25232157 MS.gene47580:CDS 40.0%
TTCAACATGTCTTGTGAAGG+AGG + chr4.3:25234295-25234314 None:intergenic 40.0%
! AAAAGTAGCTGCAGAGTGTT+TGG - chr4.3:25234186-25234205 MS.gene47580:CDS 40.0%
! AATGCCTAGTGGTATTTTGC+TGG - chr4.3:25232162-25232181 MS.gene47580:intron 40.0%
! ACTAATAGGCCTATTTTCCG+CGG - chr4.3:25234072-25234091 MS.gene47580:intron 40.0%
! AGTAGCTTAAGAAGTACGCT+CGG - chr4.3:25233057-25233076 MS.gene47580:intron 40.0%
! ATGCCTAGTGGTATTTTGCT+GGG - chr4.3:25232163-25232182 MS.gene47580:intron 40.0%
! CTCATCATTTCAGGTAAGGT+GGG - chr4.3:25233249-25233268 MS.gene47580:CDS 40.0%
! CTTCTGTTTGTTTGGAGCTA+TGG - chr4.3:25229958-25229977 MS.gene47580:CDS 40.0%
! TCAATCCAAGGCATTCACTT+CGG - chr4.3:25234322-25234341 MS.gene47580:intron 40.0%
! TCTCATCATTTCAGGTAAGG+TGG - chr4.3:25233248-25233267 MS.gene47580:CDS 40.0%
! TGATGGCAACTAGTTTGAAG+AGG - chr4.3:25233353-25233372 MS.gene47580:intron 40.0%
!! AGGCATTTCCATTTTGATCC+AGG + chr4.3:25232149-25232168 None:intergenic 40.0%
!! GGAAACTCTAGCTTTGATGA+AGG + chr4.3:25233394-25233413 None:intergenic 40.0%
!! GTAATTGATGGTGATGGTGA+TGG - chr4.3:25230943-25230962 MS.gene47580:CDS 40.0%
!! GTTGTTGTTTACTTCCCTCA+AGG - chr4.3:25230026-25230045 MS.gene47580:CDS 40.0%
!! TTTGGAGAGAGTGCTGAAAA+TGG - chr4.3:25230617-25230636 MS.gene47580:CDS 40.0%
!! TTTTTAATTGAGCTGCCCTG+CGG + chr4.3:25231649-25231668 None:intergenic 40.0%
!!! TCTGCAGCTACTTTTACATG+TGG + chr4.3:25234181-25234200 None:intergenic 40.0%
!!! TGGGTTTTGTTTGCTCAATG+AGG - chr4.3:25230289-25230308 MS.gene47580:CDS 40.0%
AAGACCTTCACAAGAGCTTG+TGG - chr4.3:25231268-25231287 MS.gene47580:intron 45.0%
AATGTAGGTCATCTTACCGG+AGG + chr4.3:25231525-25231544 None:intergenic 45.0%
AATTGAGATTGGGAATCCGC+AGG - chr4.3:25231630-25231649 MS.gene47580:intron 45.0%
ACAAGCCTCGTTGACAGAAA+AGG + chr4.3:25233821-25233840 None:intergenic 45.0%
ACAAGTCTCACCTCACTTTC+AGG + chr4.3:25230561-25230580 None:intergenic 45.0%
ACACGACAGAACACATGAGA+AGG + chr4.3:25230101-25230120 None:intergenic 45.0%
ACACTCAAGGTAAGTACCAG+GGG + chr4.3:25231102-25231121 None:intergenic 45.0%
ACCAAGATTCAATTGCTGGC+CGG + chr4.3:25231696-25231715 None:intergenic 45.0%
ACGGCCAGGAATGGAAATTT+CGG - chr4.3:25231303-25231322 MS.gene47580:intron 45.0%
ACTCAGTTGGAATGAGGTTC+AGG - chr4.3:25231961-25231980 MS.gene47580:intron 45.0%
AGAGTCTTGCAGAACATGTG+GGG + chr4.3:25231009-25231028 None:intergenic 45.0%
AGATGTTCCAAGTGTCCTTG+AGG + chr4.3:25230044-25230063 None:intergenic 45.0%
AGATTCACCAAAGCCATTGC+AGG + chr4.3:25233737-25233756 None:intergenic 45.0%
AGTTGCCATCAAGCTATTGG+TGG + chr4.3:25233344-25233363 None:intergenic 45.0%
AGTTTGAAGAGGACCAAGAC+TGG - chr4.3:25233364-25233383 MS.gene47580:intron 45.0%
ATGTGTATTTGTGCAGGCTG+AGG - chr4.3:25230497-25230516 MS.gene47580:CDS 45.0%
ATTGAGATTGGGAATCCGCA+GGG - chr4.3:25231631-25231650 MS.gene47580:intron 45.0%
CACACTCAAGGTAAGTACCA+GGG + chr4.3:25231103-25231122 None:intergenic 45.0%
CACAGGAGTTTCCTTAACTG+CGG + chr4.3:25232263-25232282 None:intergenic 45.0%
CCTGTGTCATCCTGTCATAT+GGG - chr4.3:25232338-25232357 MS.gene47580:CDS 45.0%
CTGAGAAGACCATCCATTTG+TGG + chr4.3:25233893-25233912 None:intergenic 45.0%
CTGATGTGGATCCTGTTAGA+TGG - chr4.3:25232123-25232142 MS.gene47580:CDS 45.0%
CTGTGTCATCCTGTCATATG+GGG - chr4.3:25232339-25232358 MS.gene47580:CDS 45.0%
GAACGATGAGGTGTATTGTC+AGG - chr4.3:25230524-25230543 MS.gene47580:CDS 45.0%
GAAGACGAAACACCTTCTTC+TGG - chr4.3:25229879-25229898 MS.gene47580:CDS 45.0%
GACCATCCATTTGTGGATCT+TGG + chr4.3:25233886-25233905 None:intergenic 45.0%
GAGGATAACGTCCTTCAAAG+AGG - chr4.3:25234000-25234019 MS.gene47580:intron 45.0%
GATGTTCCAAGTGTCCTTGA+GGG + chr4.3:25230043-25230062 None:intergenic 45.0%
GATGTTTCCTGCAATGGCTT+TGG - chr4.3:25233727-25233746 MS.gene47580:CDS 45.0%
GCAACAAAAGTTGAGGGAAG+GGG - chr4.3:25230921-25230940 MS.gene47580:CDS 45.0%
GCTTCTGATACTAGCACTCA+TGG - chr4.3:25231033-25231052 MS.gene47580:intron 45.0%
GGCTACCAAGATTCAATTGC+TGG + chr4.3:25231700-25231719 None:intergenic 45.0%
GTCACTTGCCAGATAAATCC+TGG - chr4.3:25234264-25234283 MS.gene47580:intron 45.0%
GTCCCAATTCTACCTGTTAG+AGG + chr4.3:25233511-25233530 None:intergenic 45.0%
GTGCAACAAAAGTTGAGGGA+AGG - chr4.3:25230919-25230938 MS.gene47580:CDS 45.0%
TAACACAAGCACCTAAGTGC+AGG + chr4.3:25232444-25232463 None:intergenic 45.0%
TATTTGTGCAGGCTGAGGAA+GGG - chr4.3:25230502-25230521 MS.gene47580:CDS 45.0%
TCTGATACTAGCACTCATGG+TGG - chr4.3:25231036-25231055 MS.gene47580:intron 45.0%
TGATGAAGGCAATCCAGTCT+TGG + chr4.3:25233380-25233399 None:intergenic 45.0%
TGCCAAGATCCACAAATGGA+TGG - chr4.3:25233881-25233900 MS.gene47580:intron 45.0%
TGCTGGTACATCAACACTGA+TGG + chr4.3:25233940-25233959 None:intergenic 45.0%
TGGCACACTTTCAAAACCGT+AGG - chr4.3:25232505-25232524 MS.gene47580:CDS 45.0%
TGGTACACATTCACGCGATT+TGG - chr4.3:25234122-25234141 MS.gene47580:intron 45.0%
TTACTTCCCTCAAGGACACT+TGG - chr4.3:25230034-25230053 MS.gene47580:CDS 45.0%
TTCACAAGAGCTTGTGGCAA+AGG - chr4.3:25231274-25231293 MS.gene47580:intron 45.0%
TTCCACCACCAATAGCTTGA+TGG - chr4.3:25233336-25233355 MS.gene47580:CDS 45.0%
TTGAGGGAAGGGGTAATTGA+TGG - chr4.3:25230931-25230950 MS.gene47580:CDS 45.0%
TTGGTTGCACTACAGAGAAG+CGG - chr4.3:25234141-25234160 MS.gene47580:CDS 45.0%
TTTGATCCAGGCCATCTAAC+AGG + chr4.3:25232137-25232156 None:intergenic 45.0%
TTTGCCACAAGCTCTTGTGA+AGG + chr4.3:25231275-25231294 None:intergenic 45.0%
! ACAAGCCTTTTCTGTCAACG+AGG - chr4.3:25233813-25233832 MS.gene47580:intron 45.0%
! CTAATAGGCCTATTTTCCGC+GGG - chr4.3:25234073-25234092 MS.gene47580:intron 45.0%
! GGTGTATTGTCAGGTGTTGT+TGG - chr4.3:25230533-25230552 MS.gene47580:CDS 45.0%
!! ACTTTTTGATGGTCACCACC+AGG - chr4.3:25233858-25233877 MS.gene47580:intron 45.0%
!! ATAGGTAGTGTTGGTGCTGT+TGG - chr4.3:25229921-25229940 MS.gene47580:CDS 45.0%
!! CTTGCAAGACCTTCTGGAAT+CGG + chr4.3:25233762-25233781 None:intergenic 45.0%
!! GAAGGGGTAATTGATGGTGA+TGG - chr4.3:25230937-25230956 MS.gene47580:CDS 45.0%
!! GAATTACAGAGGTGCTATCC+CGG - chr4.3:25233643-25233662 MS.gene47580:intron 45.0%
!! GTTGTTGGTTCCTGAAAGTG+AGG - chr4.3:25230548-25230567 MS.gene47580:CDS 45.0%
!!! ATGTTTTTTTTTTTTTTTTT+TGG - chr4.3:25230583-25230602 MS.gene47580:CDS 5.0%
AATCCATGGTTGACGCTTGC+TGG + chr4.3:25233957-25233976 None:intergenic 50.0%
ACAGAGAAGCGGTCAAGAGT+TGG - chr4.3:25234152-25234171 MS.gene47580:CDS 50.0%
ACATGTCTTGTGAAGGAGGG+AGG + chr4.3:25234291-25234310 None:intergenic 50.0%
AGGCCTATTAGTTGGCGTTG+AGG + chr4.3:25234064-25234083 None:intergenic 50.0%
AGGCTTCAACCCCATATGAC+AGG + chr4.3:25232351-25232370 None:intergenic 50.0%
AGGGAGGTCCAGGATTTATC+TGG + chr4.3:25234275-25234294 None:intergenic 50.0%
ATCTGGCAAGTGACTGCAGA+GGG + chr4.3:25234258-25234277 None:intergenic 50.0%
CAGGGGAGGAAAGCAATCTT+CGG + chr4.3:25231085-25231104 None:intergenic 50.0%
CAGGTGCCAAGATCCACAAA+TGG - chr4.3:25233877-25233896 MS.gene47580:intron 50.0%
CATTTGTGGATCTTGGCACC+TGG + chr4.3:25233879-25233898 None:intergenic 50.0%
CCCATATGACAGGATGACAC+AGG + chr4.3:25232341-25232360 None:intergenic 50.0%
CGATTCCAGAAGGTCTTGCA+AGG - chr4.3:25233760-25233779 MS.gene47580:intron 50.0%
CGCAGTTAAGGAAACTCCTG+TGG - chr4.3:25232261-25232280 MS.gene47580:CDS 50.0%
CTGCCTCAACGCCAACTAAT+AGG - chr4.3:25234058-25234077 MS.gene47580:intron 50.0%
CTTGACCTTGCAAGACCTTC+TGG + chr4.3:25233561-25233580 None:intergenic 50.0%
GAGATGCTGTTCTGTTCCTC+CGG - chr4.3:25231506-25231525 MS.gene47580:intron 50.0%
GCACACTCAAGGTAAGTACC+AGG + chr4.3:25231104-25231123 None:intergenic 50.0%
GCCTGTGTCATCCTGTCATA+TGG - chr4.3:25232337-25232356 MS.gene47580:CDS 50.0%
GCTCAACAGGGTTTCACCAT+GGG - chr4.3:25233291-25233310 MS.gene47580:CDS 50.0%
GCTTGTTCTGACCGCAGTTA+AGG - chr4.3:25232249-25232268 MS.gene47580:intron 50.0%
GGAAGCTTCAAGGCTCAACA+GGG - chr4.3:25233279-25233298 MS.gene47580:CDS 50.0%
GGCATTTGCTTACGACTGGA+TGG - chr4.3:25231449-25231468 MS.gene47580:intron 50.0%
GGGATGACATGGAAGCTTCA+AGG - chr4.3:25233269-25233288 MS.gene47580:CDS 50.0%
GGTCCCAGCAAAATACCACT+AGG + chr4.3:25232169-25232188 None:intergenic 50.0%
GTATTTGTGCAGGCTGAGGA+AGG - chr4.3:25230501-25230520 MS.gene47580:CDS 50.0%
GTCGTAAGCAAATGCCTTCG+TGG + chr4.3:25231445-25231464 None:intergenic 50.0%
GTTTCCTGTTGAAGCGATCC+CGG + chr4.3:25233680-25233699 None:intergenic 50.0%
TATCCCGGTTCAACCTATCC+CGG - chr4.3:25233658-25233677 MS.gene47580:intron 50.0%
TATCTGGCAAGTGACTGCAG+AGG + chr4.3:25234259-25234278 None:intergenic 50.0%
TCAGGTAAGGTGGGATGACA+TGG - chr4.3:25233258-25233277 MS.gene47580:CDS 50.0%
TCCGGCCAGCAATTGAATCT+TGG - chr4.3:25231692-25231711 MS.gene47580:intron 50.0%
TGAAGGACGTTATCCTCCAC+CGG + chr4.3:25233997-25234016 None:intergenic 50.0%
TGCCATCAAGCTATTGGTGG+TGG + chr4.3:25233341-25233360 None:intergenic 50.0%
TGGAAGCTTCAAGGCTCAAC+AGG - chr4.3:25233278-25233297 MS.gene47580:CDS 50.0%
TTGCTCCGAAGTGAATGCCT+TGG + chr4.3:25234330-25234349 None:intergenic 50.0%
TTTCCTGTTGAAGCGATCCC+GGG + chr4.3:25233679-25233698 None:intergenic 50.0%
! AAGGCATTCACTTCGGAGCA+AGG - chr4.3:25234329-25234348 MS.gene47580:intron 50.0%
! CAGACTTTGGGGAATCACTG+CGG - chr4.3:25233533-25233552 MS.gene47580:intron 50.0%
! GCTTGTCCATATGGTTGGCT+AGG + chr4.3:25233799-25233818 None:intergenic 50.0%
!! AGTGTTGGTGCTGTTGGTTC+TGG - chr4.3:25229927-25229946 MS.gene47580:CDS 50.0%
!! ATTTGCAATGGGAGCACCCT+CGG + chr4.3:25234223-25234242 None:intergenic 50.0%
!! CGAAGGCATTTGCTTACGAC+TGG - chr4.3:25231445-25231464 MS.gene47580:intron 50.0%
!! GATGGTGATGGTGATGGTGA+AGG - chr4.3:25230949-25230968 MS.gene47580:CDS 50.0%
ATCCCGGTTCAACCTATCCC+GGG - chr4.3:25233659-25233678 MS.gene47580:intron 55.0%
ATTTCCATTCCTGGCCGTGC+AGG + chr4.3:25231301-25231320 None:intergenic 55.0%
CGAAGATTGCTTTCCTCCCC+TGG - chr4.3:25231083-25231102 MS.gene47580:intron 55.0%
CGGTTCCAGAAGGTCTTGCA+AGG - chr4.3:25233553-25233572 MS.gene47580:intron 55.0%
CTCAAGGTAAGTACCAGGGG+AGG + chr4.3:25231099-25231118 None:intergenic 55.0%
CTGAAGATGCTGCAGAGCGA+AGG - chr4.3:25231997-25232016 MS.gene47580:intron 55.0%
CTTGTGGCAAAGGACCTGCA+CGG - chr4.3:25231284-25231303 MS.gene47580:intron 55.0%
GACAGGATGACACAGGCATG+AGG + chr4.3:25232334-25232353 None:intergenic 55.0%
GAGCTATGGCATGCTTGTGC+TGG - chr4.3:25229972-25229991 MS.gene47580:CDS 55.0%
GCATTCACTTCGGAGCAAGG+CGG - chr4.3:25234332-25234351 MS.gene47580:intron 55.0%
GGAATCACTGCGGTTCCAGA+AGG - chr4.3:25233543-25233562 MS.gene47580:intron 55.0%
GGCTCAACAGGGTTTCACCA+TGG - chr4.3:25233290-25233309 MS.gene47580:CDS 55.0%
GTACCAGCAAGCGTCAACCA+TGG - chr4.3:25233951-25233970 MS.gene47580:intron 55.0%
GTGGATCCTGTTAGATGGCC+TGG - chr4.3:25232128-25232147 MS.gene47580:CDS 55.0%
TATCCCGGGATCGCTTCAAC+AGG - chr4.3:25233673-25233692 MS.gene47580:intron 55.0%
TGAGCTAGCCCGCGGAAAAT+AGG + chr4.3:25234084-25234103 None:intergenic 55.0%
TGTCTTCATGAGCTAGCCCG+CGG + chr4.3:25234092-25234111 None:intergenic 55.0%
TGTTGAAGCGATCCCGGGAT+AGG + chr4.3:25233674-25233693 None:intergenic 55.0%
TTGTGGATCTTGGCACCTGG+TGG + chr4.3:25233876-25233895 None:intergenic 55.0%
! ATCCCGGGATAGGTTGAACC+GGG + chr4.3:25233664-25233683 None:intergenic 55.0%
! GATCCCGGGATAGGTTGAAC+CGG + chr4.3:25233665-25233684 None:intergenic 55.0%
! GTGGTGGAAGATGAGCCTGA+GGG + chr4.3:25233325-25233344 None:intergenic 55.0%
!! GGTGCTGTTGGTTCTGGTTC+TGG - chr4.3:25229933-25229952 MS.gene47580:CDS 55.0%
!! TGATGGTGATGGTGAAGGCG+AGG - chr4.3:25230954-25230973 MS.gene47580:CDS 55.0%
CAATCTTCGGCTGCTCGACG+AGG + chr4.3:25231072-25231091 None:intergenic 60.0%
CCATGGGAGATTGAGCCCTC+AGG - chr4.3:25233307-25233326 MS.gene47580:CDS 60.0%
CCTGAGGGCTCAATCTCCCA+TGG + chr4.3:25233310-25233329 None:intergenic 60.0%
CTTGTGAAGGAGGGAGGTCC+AGG + chr4.3:25234285-25234304 None:intergenic 60.0%
GGCTGAGGAAGGGAACGATG+AGG - chr4.3:25230512-25230531 MS.gene47580:CDS 60.0%
TAAACGCAGGGCAGCCACGA+AGG - chr4.3:25231428-25231447 MS.gene47580:intron 60.0%
!! GGTGGTGGAAGATGAGCCTG+AGG + chr4.3:25233326-25233345 None:intergenic 60.0%
AGGACCTGCACGGCCAGGAA+TGG - chr4.3:25231294-25231313 MS.gene47580:intron 65.0%
GGCAAAGGACCTGCACGGCC+AGG - chr4.3:25231289-25231308 MS.gene47580:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 25229849 25234425 25229849 ID=MS.gene47580
chr4.3 mRNA 25229849 25234425 25229849 ID=MS.gene47580.t1;Parent=MS.gene47580
chr4.3 exon 25234350 25234425 25234350 ID=MS.gene47580.t1.exon1;Parent=MS.gene47580.t1
chr4.3 CDS 25234350 25234425 25234350 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25234135 25234226 25234135 ID=MS.gene47580.t1.exon2;Parent=MS.gene47580.t1
chr4.3 CDS 25234135 25234226 25234135 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25233705 25233761 25233705 ID=MS.gene47580.t1.exon3;Parent=MS.gene47580.t1
chr4.3 CDS 25233705 25233761 25233705 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25233170 25233358 25233170 ID=MS.gene47580.t1.exon4;Parent=MS.gene47580.t1
chr4.3 CDS 25233170 25233358 25233170 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25232936 25233020 25232936 ID=MS.gene47580.t1.exon5;Parent=MS.gene47580.t1
chr4.3 CDS 25232936 25233020 25232936 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25232747 25232837 25232747 ID=MS.gene47580.t1.exon6;Parent=MS.gene47580.t1
chr4.3 CDS 25232747 25232837 25232747 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25232494 25232658 25232494 ID=MS.gene47580.t1.exon7;Parent=MS.gene47580.t1
chr4.3 CDS 25232494 25232658 25232494 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25232256 25232375 25232256 ID=MS.gene47580.t1.exon8;Parent=MS.gene47580.t1
chr4.3 CDS 25232256 25232375 25232256 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25232102 25232177 25232102 ID=MS.gene47580.t1.exon9;Parent=MS.gene47580.t1
chr4.3 CDS 25232102 25232177 25232102 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25230853 25231012 25230853 ID=MS.gene47580.t1.exon10;Parent=MS.gene47580.t1
chr4.3 CDS 25230853 25231012 25230853 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
chr4.3 exon 25229849 25230756 25229849 ID=MS.gene47580.t1.exon11;Parent=MS.gene47580.t1
chr4.3 CDS 25229849 25230756 25229849 ID=cds.MS.gene47580.t1;Parent=MS.gene47580.t1
Gene Sequence

>MS.gene47580

ATGGGTTTGATTGATCTCAACACTACTGAGGAAGACGAAACACCTTCTTCTGGTTCATCTTCAAGTACAAGTATAGGTAGTGTTGGTGCTGTTGGTTCTGGTTCTGGTTCTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCAAAGAAAGGAAGTGTTGTTGTTTACTTCCCTCAAGGACACTTGGAACATCTTCATGATTTTCCGTTATCTTTTTCGGATAATATTCCTTCTCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGTGAGTTTTTGTTATTCCCTTCTTTTCAGCGTACAAATCGAATGTTGTCTTTTATTGGTCGGGTTATAGTTCAATATTCTATTTTCATGTTTTTTTTTTGTTTTACTTTTTTTCTTCTAAAATTTGGTTTCTTTTTGGGTTTTTACATGTGGGTTTTGTTTGCTCAATGAGGAAATTGATGGGAAAATTATCTATGTTAGTGTCAAGTTTGGCATAGGTTGTTGTTCAATTGACAAATTTTGTGAATGACACTTTTGTTATCTGTGTGTTTTATCTCATTTTTTTTCTTTTTTTTTTTTTTTGAGTGAAACTTGTTATGGTTTGGTTTTGTTGTTGCTTTGTATTTTTTGACATAGAATGTGTATTTGTGCAGGCTGAGGAAGGGAACGATGAGGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGGTGAGACTTGTTTATGTTTTTTTTTTTTTTTTTTGGTTCAGTTCTGTTTTGGAGAGAGTGCTGAAAATGGAAAAAAATCTTGATTAATCTTGAGAAATATTACTCAGTGTCTAAGTCTTAGGGGTCTAAGTTGACCATTTGAGATGATTATAATGAAATTGCTTGATTAAGCTATGTTAAGTGTCATGTTACCAAAGGAGTCATAGACCATAGTACTAAGTAGCTATAGGCTTGTTCTGTGTCTTTGTTGATTAACTAGTCCTTTTGAACACTAGAGTGCTACATTAGTATTAAATGAAGTGACTTTATGAACTGATTTTTGAATGAACTTGGCCACTTTTTATAGCAAGTGCAACAAAAGTTGAGGGAAGGGGTAATTGATGGTGATGGTGATGGTGAAGGCGAGGATACTGATGCTGTTATGAAGTCAACGACACCCCACATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTACCTCGTCGAGCAGCCGAAGATTGCTTTCCTCCCCTGGTACTTACCTTGAGTGTGCTACTTTGAAATGACACACCCTTGTTCAATTTTGAAAGTTTTCTTTCATCAAAACTTGTATCTAATTTCTAAAATTGTGCTAAATAGTTATTATTTCAATGCATTTTGAATTTAATCCACTTCCTCTTTAGGATTACTCTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGACCTGCACGGCCAGGAATGGAAATTTCGGCATATATACAGAGGTTTTTCACTTGTTTCTCATTTTTATAAGGACAAGAACATTTCAGGTAGAATACCAATTGATTGTTGGGTTTGTATTTTCGGTTTCTAATAAACGCAGGGCAGCCACGAAGGCATTTGCTTACGACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTCCTCCGGTAAGATGACCTACATTCTATCAATCAAAACATTTACATAGAGTAACAAGGACTCATCCGACATTTTATATTTCACGACAATTGACAGAGGAGAAGATGGCGAATTGAGATTGGGAATCCGCAGGGCAGCTCAATTAAAAAATTGCAGTAACTTTTCATCTATCTCCGGCCAGCAATTGAATCTTGGTAGCCTCAAAGACTTAGTTAATGCTTTATCTACTAGATGTGCCTTTAGCATACACTACAATCCAAGGTATTTTTATGGCTATTCTCTTGTACGTTTTTTAGTAGTTCGTGAAAGGGAAATCGTTCTTTTCTATCTACAATTTCTAGAGTGTAATATTTTCAATGCTTTTACTATTTCTTTGTAGGATTGGTTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAGCGAAGGTTTGTTCATGATTCAGTTTTTTGTATTCAGATAACCTTATTTAAGAGAATCTTAATCATGTTCCTTTTATTATGCAGATTCACAGGACTAATTATTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTATTTTGCTGGGACCTTTCTAACTTCGTTTATTAGGATTATCATTTATATGCTTGAAATTGGGTGTTAGGAGATGGCTTGTTCTGACCGCAGTTAAGGAAACTCCTGTGGATTTATCATATATAAGTTTGCATTTTTTTTTTGTCAATGGTGTGGCTCCTCATGCCTGTGTCATCCTGTCATATGGGGTTGAAGCCTGATATTCTATTTTCAATAAAATTTTGCAGACGGTTTGTTAGTATGATTTTACCGTCATTTTATTATATAGCCTGCACTTAGGTGCTTGTGTTATAGCAAAATACCTCTGTCTTCCATCTAACTATACATATTAGTGGCACACTTTCAAAACCGTAGGAGTTCTGTACTACTGTTATGTATTCCTTTAGAATGAGAAGGACTATTATATAGTCAAATAATTCCATTATTGAACTGGCTTTATGGAATGTGAAAATTGTAGAAACTTACATGGATCAGTCTTTCAGTGTAATAATTAAATACTCCCTCCGTTTCAAAATAAGTGTCACTTTAGCAAAAATATTTTCTTTCAAAATGAATTTCACTTACACTTTTCAATGTAGAATTATTATTCTACTTCCAATTGTACCCTCTAATTAATTGAGTGTACACTACTTCCAAAACATTACACCAATAGTAAATAAGGTAAGTTTAGTAAAATTGTCATGTCATTTGACACCATCATTACATTTATCAATCTGTGTATAAAAACCTTAAACGACACTCATTTTGAAACAGAAGGGAGTATTACTTAACATAGGAAAAAATTTGGATTTTCAAACCAATACCATATTTCACTTCATATTGTTTTGCCTGACATTGTCTATACTTTACGTTCTTGAAGTAACTCAAGTTTTTGGTAGATGTGAAGTAGCTTAAGAAGTACGCTCGGCAAGCGTATTTCTACTAATTAATCTATAAAAGGCCATTCGTGTGCATGTTTGAAGATTGATTGCATTTGCTGTTCATGGAAACTATGATTGCTTCCTATTAACCTCATTACTACTTGTTTGTGATGTCATATTTAGAGTAAATTGACTGATTGCAATCAAATGGCATTTCTCATCATTTCAGGTAAGGTGGGATGACATGGAAGCTTCAAGGCTCAACAGGGTTTCACCATGGGAGATTGAGCCCTCAGGCTCATCTTCCACCACCAATAGCTTGATGGCAACTAGTTTGAAGAGGACCAAGACTGGATTGCCTTCATCAAAGCTAGAGTTTCCGGTTCCCAGTATGTCTCAATTTATTTATTTTTTTGGTTTACTTTTGAATTTTTCTACCTCATGCAATGAAACGTCATTGATGAATTGCTCCATTCCTCTAACAGGTAGAATTGGGACATCAGACTTTGGGGAATCACTGCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGCGTTGATACTACTTTCAATAGTATCAGTGCTCATAGTCACCACCAGTTATCTGAATTACAGAGGTGCTATCCCGGTTCAACCTATCCCGGGATCGCTTCAACAGGAAACAACATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGACAAGCCTTTTCTGTCAACGAGGCTTGTAGAAATGGTCGCTTTGGACTTTTTGATGGTCACCACCAGGTGCCAAGATCCACAAATGGATGGTCTTCTCAGACGAGTAACAACTCACATTTTCATCCATCAGTGTTGATGTACCAGCAAGCGTCAACCATGGATTATAATAACAAAATTAATCCGGTGGAGGATAACGTCCTTCAAAGAGGTTCGTTCTATGCTTCTGAAATGAAAGATGGTACATCTGCCTCAACGCCAACTAATAGGCCTATTTTCCGCGGGCTAGCTCATGAAGACATGAACTCGTTTGGTACACATTCACGCGATTTGGTTGCACTACAGAGAAGCGGTCAAGAGTTGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAAGATGCAGAACCCTCTGCAGTCACTTGCCAGATAAATCCTGGACCTCCCTCCTTCACAAGACATGTTGAAGATGATTTCAATCCAAGGCATTCACTTCGGAGCAAGGCGGTTGAAAATTACTATACCAAAGTAAGCAATATTCATCCTGTGAGAGACATGATTATCGATAGAGTATTCTAG
Protein sequence

>MS.gene47580.t1

MGLIDLNTTEEDETPSSGSSSSTSIGHLEHLHDFPLSFSDNIPSHVFCRVVDVKLHAEEGNDEVYCQVLLVPESEQVQQKLREGVIDGDGDGEGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCSNFSSISGQQLNLGSLKDLVNALSTRCAFSIHYNPRIGSSEFIIPIHKFLKSLDYSYSVGMRFRMRFESEDAAERRFTGLIIGITDVDPVRWPGSKWKCLVVRWDDMEASRLNRVSPWEIEPSGSSSTTNSLMATSLKRTKTGLPSSKLEFPVPSRIGTSDFGESLRFQKVLQGQEILGVDTTFNSISAHSHHQLSELQRCYPGSTYPGIASTGNNIRIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGQAFSVNEACRNGRFGLFDGHHQVPRSTNGWSSQTSNNSHFHPSVLMYQQASTMDYNNKINPVEDNVLQRGSFYASEMKDGTSASTPTNRPIFRGLAHEDMNSFGTHSRDLVALQRSGQELVSTCKSSCRVFGFSLTEGAPIANKDAEPSAVTCQINPGPPSFTRHVEDDFNPRHSLRSKAVENYYTKVSNIHPVRDMIIDRVF