Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029104.t1 | XP_013470461.1 | 98 | 451 | 7 | 1 | 1 | 451 | 1 | 449 | 4.50E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029104.t1 | Q9BRT8 | 34.9 | 370 | 193 | 5 | 88 | 446 | 41 | 373 | 1.0e-57 | 225.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029104.t1 | A0A072VR75 | 98.0 | 451 | 7 | 1 | 1 | 451 | 1 | 449 | 3.3e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78682 | MS.gene029104 | PPI |
| MS.gene029104 | MS.gene90838 | PPI |
| MS.gene029104 | MS.gene054657 | PPI |
| MS.gene75176 | MS.gene029104 | PPI |
| MS.gene029104 | MS.gene55396 | PPI |
| MS.gene029104 | MS.gene066450 | PPI |
| MS.gene90838 | MS.gene029104 | PPI |
| MS.gene55397 | MS.gene029104 | PPI |
| MS.gene53182 | MS.gene029104 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029104.t1 | MTR_1g115505 | 98.891 | 451 | 3 | 1 | 1 | 451 | 1 | 449 | 0.0 | 910 |
| MS.gene029104.t1 | MTR_8g071110 | 52.414 | 435 | 174 | 5 | 21 | 451 | 2 | 407 | 3.24e-148 | 428 |
| MS.gene029104.t1 | MTR_5g044050 | 36.772 | 378 | 193 | 7 | 83 | 449 | 24 | 366 | 1.90e-72 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029104.t1 | AT1G80480 | 78.005 | 391 | 77 | 2 | 61 | 451 | 63 | 444 | 0.0 | 574 |
| MS.gene029104.t1 | AT1G15730 | 71.531 | 418 | 110 | 3 | 36 | 451 | 38 | 448 | 0.0 | 573 |
| MS.gene029104.t1 | AT1G26520 | 37.398 | 369 | 185 | 6 | 89 | 449 | 42 | 372 | 1.38e-75 | 241 |
Find 121 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTGCTTCAAGCTTATT+TGG | 0.162746 | 1.3:-78776986 | MS.gene029104:CDS |
| CTTCTTTGGTCCAGCGGATT+AGG | 0.207261 | 1.3:-78774008 | MS.gene029104:CDS |
| ATGGTCAAATTTGCCTTTCT+TGG | 0.221608 | 1.3:+78776319 | None:intergenic |
| ATACTCCGTCCTCTTTAAAT+TGG | 0.236187 | 1.3:+78773861 | None:intergenic |
| GAATGAAAGATTTGTCTTTC+AGG | 0.236233 | 1.3:-78772493 | MS.gene029104:intron |
| GTGAACTTGGATTATGTTCT+TGG | 0.237961 | 1.3:-78773832 | MS.gene029104:CDS |
| TCTGGCTGCCACAACCTTTC+CGG | 0.245017 | 1.3:+78772267 | None:intergenic |
| CGAATCAGACATCACTTCTT+TGG | 0.265430 | 1.3:-78774022 | MS.gene029104:CDS |
| TTGTTTGTCCTTGGCTCATC+TGG | 0.268152 | 1.3:+78772249 | None:intergenic |
| GCCTCATTGACCACACCTTT+TGG | 0.295052 | 1.3:+78776048 | None:intergenic |
| CTACGGAAGATTGTAGAAAT+TGG | 0.299599 | 1.3:+78776869 | None:intergenic |
| TGATCGAATAATCGTAAATA+AGG | 0.306250 | 1.3:-78776004 | MS.gene029104:intron |
| AGAAGAGTGGTGAAGGGTTT+GGG | 0.309735 | 1.3:+78776947 | None:intergenic |
| GAACTTGAATGCTGAGGAAT+TGG | 0.310817 | 1.3:-78772208 | MS.gene029104:CDS |
| AATGGTATCCTCAGCATAAA+AGG | 0.324805 | 1.3:+78776149 | None:intergenic |
| AATTTAAAGAGGACGGAGTA+TGG | 0.326999 | 1.3:-78773859 | MS.gene029104:CDS |
| AAGAAGAGTGGTGAAGGGTT+TGG | 0.330035 | 1.3:+78776946 | None:intergenic |
| TGGCATTGGAGGCTTTGATT+TGG | 0.346009 | 1.3:-78773812 | MS.gene029104:CDS |
| TTCTTTGGTCCAGCGGATTA+GGG | 0.359042 | 1.3:-78774007 | MS.gene029104:intron |
| GCATAAAAGGTCTGGATTAT+CGG | 0.359801 | 1.3:+78776162 | None:intergenic |
| TAATACAGGTTTGGCGAATC+CGG | 0.361283 | 1.3:-78776187 | MS.gene029104:intron |
| GTGGCAGGAATGCGGTTATC+AGG | 0.367337 | 1.3:+78776752 | None:intergenic |
| GTCACTACGTTCCATCAATA+AGG | 0.373389 | 1.3:+78772557 | None:intergenic |
| AAAACAATCTTGTTTGTCCT+TGG | 0.389225 | 1.3:+78772240 | None:intergenic |
| CATGGTCATGGTCATGGCTA+TGG | 0.392483 | 1.3:+78773268 | None:intergenic |
| TTGGATTATGTTCTTGGCAT+TGG | 0.395925 | 1.3:-78773826 | MS.gene029104:CDS |
| TTTGGTGAGATTGATATTGA+TGG | 0.412472 | 1.3:-78776458 | MS.gene029104:CDS |
| AGAGGCGAGTGAGTTTGTTA+TGG | 0.423350 | 1.3:+78776840 | None:intergenic |
| GAAATTGGAGATGAGTTTAA+CGG | 0.433464 | 1.3:+78776884 | None:intergenic |
| GTGGCTTGGTACCTTATTGA+TGG | 0.439152 | 1.3:-78772568 | MS.gene029104:CDS |
| AAATGATGATGATACCTTGC+CGG | 0.444794 | 1.3:+78776706 | None:intergenic |
| GGAGTTCATGACATATTTCA+AGG | 0.445771 | 1.3:-78772294 | MS.gene029104:CDS |
| AACGTAGTGACGACATTTAT+AGG | 0.447587 | 1.3:-78772545 | MS.gene029104:CDS |
| CCGTCCTCTTTAAATTGGCC+AGG | 0.458430 | 1.3:+78773866 | None:intergenic |
| TGTGGTCATGTGAATCTTCA+TGG | 0.466615 | 1.3:+78773208 | None:intergenic |
| TATCCTCAGCATAAAAGGTC+TGG | 0.467827 | 1.3:+78776154 | None:intergenic |
| GAATGCTGAGGAATTGGAAA+AGG | 0.468936 | 1.3:-78772202 | MS.gene029104:CDS |
| GATCATGATGATGGTGTTCA+TGG | 0.472248 | 1.3:+78773244 | None:intergenic |
| AAAGGTCTTCTATCTGTTCA+AGG | 0.474112 | 1.3:-78772519 | MS.gene029104:CDS |
| TTGTCTTTGCTGTACTGTGA+GGG | 0.479297 | 1.3:-78776378 | MS.gene029104:CDS |
| CATATTGTTATTGAGACTAC+TGG | 0.484719 | 1.3:-78776299 | MS.gene029104:intron |
| TTGCACCAGACTGATCTTGT+TGG | 0.485087 | 1.3:-78774045 | MS.gene029104:intron |
| CAGTAGTCTCAATAACAATA+TGG | 0.488237 | 1.3:+78776300 | None:intergenic |
| ATGGTCATGGTCATGGCTAT+GGG | 0.492078 | 1.3:+78773269 | None:intergenic |
| CTATAGGCTAACATGTGGCT+TGG | 0.493336 | 1.3:-78772582 | MS.gene029104:intron |
| GATTATGTTCTTGGCATTGG+AGG | 0.493460 | 1.3:-78773823 | MS.gene029104:CDS |
| GAATTAGTCACTTCCAAGAA+AGG | 0.495832 | 1.3:-78776332 | MS.gene029104:CDS |
| ACCGAGAAAACCGGTGATGA+TGG | 0.498944 | 1.3:+78776730 | None:intergenic |
| TCACGATCCTGGCGTTTCAT+CGG | 0.503113 | 1.3:-78772798 | MS.gene029104:CDS |
| TTCTTAGTATCACAGCAAAC+AGG | 0.504205 | 1.3:+78772170 | None:intergenic |
| GGAGTATGGAAAGGTGAACT+TGG | 0.507746 | 1.3:-78773845 | MS.gene029104:CDS |
| AATTGCGGTTATTGAAAATG+AGG | 0.508358 | 1.3:-78776569 | MS.gene029104:intron |
| AATGCTGAGGAATTGGAAAA+GGG | 0.512342 | 1.3:-78772201 | MS.gene029104:CDS |
| GTTGGATGGTGTTGTCACTT+TGG | 0.513457 | 1.3:-78776112 | MS.gene029104:CDS |
| GTTTGTTATGGTTGTTACTA+CGG | 0.516237 | 1.3:+78776852 | None:intergenic |
| TCGGAGTCGTCGGTGGTTTG+AGG | 0.520426 | 1.3:+78776797 | None:intergenic |
| CATGGTCATGGTCATGGTCA+TGG | 0.522744 | 1.3:+78773262 | None:intergenic |
| TGACATATTTCAAGGTTCAC+CGG | 0.523489 | 1.3:-78772286 | MS.gene029104:CDS |
| GGAGACGTCGTCGGAGTCGT+CGG | 0.528650 | 1.3:+78776787 | None:intergenic |
| TTTAATGAAGTCAAGTTGGA+TGG | 0.529204 | 1.3:-78776126 | MS.gene029104:CDS |
| CTTGCCGGAACCGAGAAAAC+CGG | 0.529351 | 1.3:+78776721 | None:intergenic |
| GGTGTTCATGGTCATGGTCA+TGG | 0.532202 | 1.3:+78773256 | None:intergenic |
| AATCTTCATGGTGATGGTGG+TGG | 0.536012 | 1.3:+78773220 | None:intergenic |
| TATTGATGGTTCTTTAGTTG+CGG | 0.539178 | 1.3:-78776444 | MS.gene029104:CDS |
| CTTGACGAGGTTAAGCCAAA+AGG | 0.540274 | 1.3:-78776063 | MS.gene029104:CDS |
| ATTCCTGCCACCATCATCAC+CGG | 0.540312 | 1.3:-78776740 | MS.gene029104:CDS |
| AAACCGGTGATGATGGTGGC+AGG | 0.542945 | 1.3:+78776737 | None:intergenic |
| CATATTCTCACAGCGGAGCA+TGG | 0.544248 | 1.3:-78776598 | MS.gene029104:CDS |
| ATGCTCACCGATGAAACGCC+AGG | 0.547926 | 1.3:+78772791 | None:intergenic |
| TTGGTTGATGCGAAACATGC+TGG | 0.549484 | 1.3:-78776093 | MS.gene029104:CDS |
| GCGGTTATCAGGTGGAATAA+CGG | 0.551353 | 1.3:+78776763 | None:intergenic |
| CATGATCATAGTCACGATCC+TGG | 0.552341 | 1.3:-78772809 | MS.gene029104:CDS |
| GGTGGTGGTGATCATGATGA+TGG | 0.553558 | 1.3:+78773235 | None:intergenic |
| GAGAGCGCTGTTAATGATGA+AGG | 0.554591 | 1.3:-78773312 | MS.gene029104:CDS |
| ATTCCAGAAAATAAACAGCC+TGG | 0.556534 | 1.3:-78773884 | MS.gene029104:intron |
| AAGGTTCACCGGAAAGGTTG+TGG | 0.556980 | 1.3:-78772275 | MS.gene029104:CDS |
| GACGACATTTATAGGATGAA+AGG | 0.558665 | 1.3:-78772537 | MS.gene029104:CDS |
| TATTTCAAGGTTCACCGGAA+AGG | 0.560823 | 1.3:-78772281 | MS.gene029104:CDS |
| GGGTTTGGGTTTGCGATAAG+CGG | 0.562113 | 1.3:+78776961 | None:intergenic |
| CATGTGAATCTTCATGGTGA+TGG | 0.566710 | 1.3:+78773214 | None:intergenic |
| GATATTATGTTGTTGAACAA+TGG | 0.568349 | 1.3:-78776401 | MS.gene029104:CDS |
| AGACACTAACCCTAATCCGC+TGG | 0.576738 | 1.3:+78773998 | None:intergenic |
| AGCAAGTACTAACCTTCTCA+AGG | 0.584526 | 1.3:+78772747 | None:intergenic |
| AAAGAGGACGGAGTATGGAA+AGG | 0.586024 | 1.3:-78773854 | MS.gene029104:CDS |
| GTGAATCTTCATGGTGATGG+TGG | 0.586196 | 1.3:+78773217 | None:intergenic |
| TTGGAGGCTTTGATTTGGAG+AGG | 0.586416 | 1.3:-78773807 | MS.gene029104:intron |
| GGTGGAAAGAAGAGTGGTGA+AGG | 0.586615 | 1.3:+78776940 | None:intergenic |
| TGCTGGTTTGCATCTTGACG+AGG | 0.587527 | 1.3:-78776076 | MS.gene029104:CDS |
| GGTTTGAGGCGGAGATGAGG+TGG | 0.587638 | 1.3:+78776811 | None:intergenic |
| GGTGTTGGTGGAAAGAAGAG+TGG | 0.592017 | 1.3:+78776934 | None:intergenic |
| CAACATAATATCTTCAGCAC+CGG | 0.592357 | 1.3:+78776412 | None:intergenic |
| TTCAGTGAAACAAAACGCCA+TGG | 0.593485 | 1.3:+78777006 | None:intergenic |
| ACAGCCTGGCCAATTTAAAG+AGG | 0.594420 | 1.3:-78773870 | MS.gene029104:CDS |
| GCCAAAAGGTGTGGTCAATG+AGG | 0.599909 | 1.3:-78776049 | MS.gene029104:CDS |
| AAATTTAGGTACCATGCTTG+TGG | 0.601243 | 1.3:+78773190 | None:intergenic |
| GTTGTCTTTGCTGTACTGTG+AGG | 0.604741 | 1.3:-78776379 | MS.gene029104:CDS |
| GACGTCGTCGGAGTCGTCGG+TGG | 0.608943 | 1.3:+78776790 | None:intergenic |
| GGTGGTTTGAGGCGGAGATG+AGG | 0.610253 | 1.3:+78776808 | None:intergenic |
| GATGATGGTGTTCATGGTCA+TGG | 0.610283 | 1.3:+78773250 | None:intergenic |
| AGGGAAGAACTTGAATGCTG+AGG | 0.611753 | 1.3:-78772214 | MS.gene029104:CDS |
| GTGGAAAGAAGAGTGGTGAA+GGG | 0.612512 | 1.3:+78776941 | None:intergenic |
| ACATCACTTCTTTGGTCCAG+CGG | 0.614631 | 1.3:-78774014 | MS.gene029104:CDS |
| TGTCTTTGCTGTACTGTGAG+GGG | 0.617492 | 1.3:-78776377 | MS.gene029104:CDS |
| AAGGTCTGGATTATCGGCGC+CGG | 0.617720 | 1.3:+78776168 | None:intergenic |
| GCAGGAATGCGGTTATCAGG+TGG | 0.618572 | 1.3:+78776755 | None:intergenic |
| CCTGGCCAATTTAAAGAGGA+CGG | 0.624870 | 1.3:-78773866 | MS.gene029104:CDS |
| TCGGTGAGCATAGTTTGCGA+AGG | 0.626638 | 1.3:-78772779 | MS.gene029104:CDS |
| GAGTCGTCGGTGGTTTGAGG+CGG | 0.627298 | 1.3:+78776800 | None:intergenic |
| AGGAAACTTAGACCTTGAGA+AGG | 0.627667 | 1.3:-78772759 | MS.gene029104:intron |
| GATTCACATGACCACAAGCA+TGG | 0.628690 | 1.3:-78773201 | MS.gene029104:intron |
| TGTGGCAGCCAGATGAGCCA+AGG | 0.631087 | 1.3:-78772257 | MS.gene029104:CDS |
| GAGATGAGGTGGATGATGAG+AGG | 0.634300 | 1.3:+78776822 | None:intergenic |
| CGAGGTTAAGCCAAAAGGTG+TGG | 0.651456 | 1.3:-78776058 | MS.gene029104:CDS |
| GAGAAAACCGGTGATGATGG+TGG | 0.657464 | 1.3:+78776733 | None:intergenic |
| ATGCTGAGGAATTGGAAAAG+GGG | 0.668894 | 1.3:-78772200 | MS.gene029104:CDS |
| GTTATCAGGTGGAATAACGG+TGG | 0.683146 | 1.3:+78776766 | None:intergenic |
| TGATGATGGTGGCAGGAATG+CGG | 0.686059 | 1.3:+78776744 | None:intergenic |
| AATAACGGTGGAGACGTCGT+CGG | 0.694029 | 1.3:+78776778 | None:intergenic |
| GGAGCATGGAAAACGAATTG+CGG | 0.698183 | 1.3:-78776584 | MS.gene029104:CDS |
| ATTCAGATATCATTCTAACA+AGG | 0.703033 | 1.3:+78776351 | None:intergenic |
| TCTGAATCATATTCTCACAG+CGG | 0.771767 | 1.3:-78776605 | MS.gene029104:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTATTTTTATTTAAGAA+TGG | - | chr1.3:78773727-78773746 | MS.gene029104:intron | 10.0% |
| !!! | AAGTAAAATAAGATATTTTT+TGG | + | chr1.3:78774382-78774401 | None:intergenic | 10.0% |
| !!! | ATCTAATTTTATTATTTGAA+TGG | - | chr1.3:78776190-78776209 | MS.gene029104:intron | 10.0% |
| !!! | TCTTAAGTTTTTTTTTTTTT+TGG | - | chr1.3:78774023-78774042 | MS.gene029104:CDS | 10.0% |
| !! | AAAAATTCTATATCAAGTTA+TGG | - | chr1.3:78773376-78773395 | MS.gene029104:intron | 15.0% |
| !! | AAAACTTAAGATTTAAATGT+TGG | + | chr1.3:78774014-78774033 | None:intergenic | 15.0% |
| !! | AAACTTAAGATTTAAATGTT+GGG | + | chr1.3:78774013-78774032 | None:intergenic | 15.0% |
| !! | ACTAATTTATACTTATTACA+GGG | - | chr1.3:78773210-78773229 | MS.gene029104:CDS | 15.0% |
| !! | AGCATTAACATAAAAAATAA+AGG | + | chr1.3:78776524-78776543 | None:intergenic | 15.0% |
| !!! | ATATATTTTATGAAACTGTA+TGG | - | chr1.3:78774856-78774875 | MS.gene029104:intron | 15.0% |
| !!! | ATTAATTTGTCTTATTCATT+TGG | - | chr1.3:78776483-78776502 | MS.gene029104:intron | 15.0% |
| !!! | TAATTTTATTATTTGAATGG+TGG | - | chr1.3:78776193-78776212 | MS.gene029104:intron | 15.0% |
| !!! | TTTTCAATTGTTTAAGAAAA+AGG | - | chr1.3:78775424-78775443 | MS.gene029104:intron | 15.0% |
| !!! | TTTTTCATTGATGAAAAATA+TGG | - | chr1.3:78773243-78773262 | MS.gene029104:CDS | 15.0% |
| !!! | TTTTTCTTAAACAATTGAAA+AGG | + | chr1.3:78775425-78775444 | None:intergenic | 15.0% |
| !! | ATAATTCAAAATTCGCTATA+TGG | + | chr1.3:78773353-78773372 | None:intergenic | 20.0% |
| !! | GACTAATTTATACTTATTAC+AGG | - | chr1.3:78773209-78773228 | MS.gene029104:CDS | 20.0% |
| !! | TAAAAGCTTATAGATGTTAA+TGG | + | chr1.3:78775017-78775036 | None:intergenic | 20.0% |
| !! | TAAAAGTTTATAGATGTTCA+TGG | + | chr1.3:78774407-78774426 | None:intergenic | 20.0% |
| !! | TAAAATTGAACTGCTTATTA+GGG | - | chr1.3:78772940-78772959 | MS.gene029104:intron | 20.0% |
| !! | TAACTAAATAATGTACAGTA+TGG | - | chr1.3:78773309-78773328 | MS.gene029104:CDS | 20.0% |
| !! | TCCCAGTTAAAATAAATTTA+TGG | + | chr1.3:78775062-78775081 | None:intergenic | 20.0% |
| !! | TCTCAGTTAAAATAAGTTTA+TGG | + | chr1.3:78774452-78774471 | None:intergenic | 20.0% |
| !! | TGACAAATCTTGTAAAAAAT+AGG | + | chr1.3:78776083-78776102 | None:intergenic | 20.0% |
| !! | TGTATGAAAGTTTCAAATAA+CGG | + | chr1.3:78773868-78773887 | None:intergenic | 20.0% |
| !! | TTTCATAAGGACAAATTATA+AGG | - | chr1.3:78776260-78776279 | MS.gene029104:intron | 20.0% |
| !!! | AACTAACATACTTTTTCTAT+AGG | - | chr1.3:78776585-78776604 | MS.gene029104:CDS | 20.0% |
| !!! | AGCCATAAATTTATTTTAAC+TGG | - | chr1.3:78775057-78775076 | MS.gene029104:intron | 20.0% |
| !!! | ATGAATAGTTCTTTTGATTT+TGG | + | chr1.3:78772273-78772292 | None:intergenic | 20.0% |
| !!! | GAATTTTCAATTTCATTATG+AGG | - | chr1.3:78774614-78774633 | MS.gene029104:intron | 20.0% |
| !!! | GCCATAAATTTATTTTAACT+GGG | - | chr1.3:78775058-78775077 | MS.gene029104:intron | 20.0% |
| !!! | TAAATCTTAAGGGATTTTTT+TGG | - | chr1.3:78774592-78774611 | MS.gene029104:intron | 20.0% |
| !!! | TATTGTTTTGGAATTTACAA+TGG | - | chr1.3:78773959-78773978 | MS.gene029104:intron | 20.0% |
| !!! | TGAACATCTATAAACTTTTA+AGG | - | chr1.3:78774407-78774426 | MS.gene029104:intron | 20.0% |
| !!! | TTAACATCTATAAGCTTTTA+AGG | - | chr1.3:78775017-78775036 | MS.gene029104:intron | 20.0% |
| ! | AAATTCTCAAGAAATGCTTA+TGG | - | chr1.3:78774258-78774277 | MS.gene029104:intron | 25.0% |
| ! | AACAGTGAAGATTTAAATGT+TGG | + | chr1.3:78774516-78774535 | None:intergenic | 25.0% |
| ! | AATAATGTACAGTATGGTTA+TGG | - | chr1.3:78773315-78773334 | MS.gene029104:CDS | 25.0% |
| ! | AATGTAAGTTTACTTCTTCT+CGG | - | chr1.3:78775455-78775474 | MS.gene029104:intron | 25.0% |
| ! | AATTTATACTTATTACAGGG+TGG | - | chr1.3:78773213-78773232 | MS.gene029104:CDS | 25.0% |
| ! | ACAGTGAAGATTTAAATGTT+GGG | + | chr1.3:78774515-78774534 | None:intergenic | 25.0% |
| ! | ACTCAACAATTAGATACATT+AGG | + | chr1.3:78775620-78775639 | None:intergenic | 25.0% |
| ! | ATCCCTTAAGATTTAAATGT+TGG | + | chr1.3:78774587-78774606 | None:intergenic | 25.0% |
| ! | ATCTAGTACAATCAAAATGT+TGG | - | chr1.3:78773528-78773547 | MS.gene029104:intron | 25.0% |
| ! | ATTCAGATATCATTCTAACA+AGG | + | chr1.3:78772835-78772854 | None:intergenic | 25.0% |
| ! | CAACTTGACTTCATTAAAAA+TGG | + | chr1.3:78773055-78773074 | None:intergenic | 25.0% |
| ! | CTTCTCATATTAGTTGAAAT+CGG | - | chr1.3:78774957-78774976 | MS.gene029104:intron | 25.0% |
| ! | GAAAATAGTGTATCATTCTT+AGG | - | chr1.3:78773784-78773803 | MS.gene029104:intron | 25.0% |
| ! | GAATTTCCTATCTAATTATG+AGG | - | chr1.3:78774045-78774064 | MS.gene029104:intron | 25.0% |
| ! | GATATTATGTTGTTGAACAA+TGG | - | chr1.3:78772782-78772801 | MS.gene029104:CDS | 25.0% |
| ! | GTAAAATTGAACTGCTTATT+AGG | - | chr1.3:78772939-78772958 | MS.gene029104:intron | 25.0% |
| ! | TATTGAACTGAAATATGTAG+CGG | - | chr1.3:78774793-78774812 | MS.gene029104:intron | 25.0% |
| ! | TCCCTTAAGATTTAAATGTT+GGG | + | chr1.3:78774586-78774605 | None:intergenic | 25.0% |
| ! | TCTAGTACAATCAAAATGTT+GGG | - | chr1.3:78773529-78773548 | MS.gene029104:intron | 25.0% |
| ! | TCTTAAACAATTGAAAAGGA+AGG | + | chr1.3:78775421-78775440 | None:intergenic | 25.0% |
| ! | TCTTATTCATTTGGATACTT+GGG | - | chr1.3:78776492-78776511 | MS.gene029104:intron | 25.0% |
| ! | TGATCGAATAATCGTAAATA+AGG | - | chr1.3:78773179-78773198 | MS.gene029104:intron | 25.0% |
| ! | TGCATATGATTATTGTAGTT+TGG | - | chr1.3:78772707-78772726 | MS.gene029104:intron | 25.0% |
| ! | TGGGTATTTAGATATTTCTT+CGG | - | chr1.3:78775770-78775789 | MS.gene029104:intron | 25.0% |
| ! | TGTTTGTATTAATACAGGTT+TGG | - | chr1.3:78772987-78773006 | MS.gene029104:intron | 25.0% |
| ! | TTGACTGTTTGTATTAATAC+AGG | - | chr1.3:78772982-78773001 | MS.gene029104:intron | 25.0% |
| !! | ACAAACAAGATTGTTTTCAT+AGG | - | chr1.3:78776949-78776968 | MS.gene029104:CDS | 25.0% |
| !! | ATGTCTTCTTGATCTTTTTA+AGG | - | chr1.3:78775845-78775864 | MS.gene029104:intron | 25.0% |
| !! | CAAACAAGATTGTTTTCATA+GGG | - | chr1.3:78776950-78776969 | MS.gene029104:CDS | 25.0% |
| !! | CATTTAAATCTTCACTGTTT+TGG | - | chr1.3:78774517-78774536 | MS.gene029104:intron | 25.0% |
| !! | CATTTTTAATGAAGTCAAGT+TGG | - | chr1.3:78773053-78773072 | MS.gene029104:intron | 25.0% |
| !! | TTAGTTTGGGTTATAAAACA+TGG | - | chr1.3:78773753-78773772 | MS.gene029104:intron | 25.0% |
| !!! | AGTTCTAAAAGTTATATGGT+AGG | + | chr1.3:78775580-78775599 | None:intergenic | 25.0% |
| !!! | ATGAGAATGATTTTAGCATA+TGG | + | chr1.3:78775555-78775574 | None:intergenic | 25.0% |
| !!! | CAAGAGTTCTAAAAGTTATA+TGG | + | chr1.3:78775584-78775603 | None:intergenic | 25.0% |
| !!! | CATATAACTTTTAGAACTCT+TGG | - | chr1.3:78775582-78775601 | MS.gene029104:intron | 25.0% |
| !!! | TTAAGAATGGCTTTTAGTTT+GGG | - | chr1.3:78773740-78773759 | MS.gene029104:intron | 25.0% |
| !!! | TTGAAATGATTGACTTGAAA+TGG | + | chr1.3:78772518-78772537 | None:intergenic | 25.0% |
| !!! | TTTAAGAATGGCTTTTAGTT+TGG | - | chr1.3:78773739-78773758 | MS.gene029104:intron | 25.0% |
| AAAAAACATCTCATGTGAAG+TGG | - | chr1.3:78774341-78774360 | MS.gene029104:intron | 30.0% | |
| AATAACTCGAGTATATGTAC+AGG | + | chr1.3:78775516-78775535 | None:intergenic | 30.0% | |
| AATTGCGGTTATTGAAAATG+AGG | - | chr1.3:78772614-78772633 | MS.gene029104:intron | 30.0% | |
| AGAAAAAAGCCATGCTTTAT+TGG | + | chr1.3:78776862-78776881 | None:intergenic | 30.0% | |
| AGCAAATAGGTAAAAACTGT+TGG | + | chr1.3:78776219-78776238 | None:intergenic | 30.0% | |
| ATGTTTAGTCATAACCTCAT+GGG | - | chr1.3:78775751-78775770 | MS.gene029104:intron | 30.0% | |
| ATTAAATGCGTAGAAGAACT+AGG | + | chr1.3:78774763-78774782 | None:intergenic | 30.0% | |
| ATTGAACTGAAATATGTAGC+GGG | - | chr1.3:78774794-78774813 | MS.gene029104:intron | 30.0% | |
| ATTTAAATGTTGGGGATTTG+AGG | + | chr1.3:78774506-78774525 | None:intergenic | 30.0% | |
| ATTTAAATGTTGGGGCTTTA+AGG | + | chr1.3:78774577-78774596 | None:intergenic | 30.0% | |
| CAGTAGTCTCAATAACAATA+TGG | + | chr1.3:78772886-78772905 | None:intergenic | 30.0% | |
| CAGTGAAGATTTAAATGTTG+GGG | + | chr1.3:78774514-78774533 | None:intergenic | 30.0% | |
| CCCCAACATTTAAATCTTAA+GGG | - | chr1.3:78774582-78774601 | MS.gene029104:intron | 30.0% | |
| CCCTTAAGATTTAAATGTTG+GGG | + | chr1.3:78774585-78774604 | None:intergenic | 30.0% | |
| CTTATTCATTTGGATACTTG+GGG | - | chr1.3:78776493-78776512 | MS.gene029104:intron | 30.0% | |
| GAAATATCTAAATACCCATG+AGG | + | chr1.3:78775768-78775787 | None:intergenic | 30.0% | |
| GAAATTGGAGATGAGTTTAA+CGG | + | chr1.3:78772302-78772321 | None:intergenic | 30.0% | |
| GAATGAAAGATTTGTCTTTC+AGG | - | chr1.3:78776690-78776709 | MS.gene029104:intron | 30.0% | |
| GATTTAAATGTTGGGCTTTA+TGG | + | chr1.3:78774005-78774024 | None:intergenic | 30.0% | |
| GGAAGGAAACAAGAAAAAAA+AGG | + | chr1.3:78775404-78775423 | None:intergenic | 30.0% | |
| TCAACACACAAGACAAATTT+AGG | + | chr1.3:78776010-78776029 | None:intergenic | 30.0% | |
| TGTGCAAGATATAGATTCTA+TGG | - | chr1.3:78774222-78774241 | MS.gene029104:intron | 30.0% | |
| TTATTCATTTGGATACTTGG+GGG | - | chr1.3:78776494-78776513 | MS.gene029104:intron | 30.0% | |
| TTCAAAATTCGCTATATGGA+AGG | + | chr1.3:78773349-78773368 | None:intergenic | 30.0% | |
| TTTGGTGAGATTGATATTGA+TGG | - | chr1.3:78772725-78772744 | MS.gene029104:intron | 30.0% | |
| ! | AAAACAATCTTGTTTGTCCT+TGG | + | chr1.3:78776946-78776965 | None:intergenic | 30.0% |
| ! | AATATGGATTGTCGAGAAAA+TGG | - | chr1.3:78773259-78773278 | MS.gene029104:CDS | 30.0% |
| ! | ATATGGATTGTCGAGAAAAT+GGG | - | chr1.3:78773260-78773279 | MS.gene029104:CDS | 30.0% |
| ! | CATATTGTTATTGAGACTAC+TGG | - | chr1.3:78772884-78772903 | MS.gene029104:intron | 30.0% |
| ! | GGAAAATGACAGTATTGTTT+TGG | - | chr1.3:78773947-78773966 | MS.gene029104:intron | 30.0% |
| ! | GTCTTATTCATTTGGATACT+TGG | - | chr1.3:78776491-78776510 | MS.gene029104:intron | 30.0% |
| ! | TATTGATGGTTCTTTAGTTG+CGG | - | chr1.3:78772739-78772758 | MS.gene029104:intron | 30.0% |
| ! | TTTTTCTATAGGCTAACATG+TGG | - | chr1.3:78776596-78776615 | MS.gene029104:CDS | 30.0% |
| !! | GTAGTTTTGCTATGAAGTAA+GGG | - | chr1.3:78776316-78776335 | MS.gene029104:CDS | 30.0% |
| !! | GTTTGTTATGGTTGTTACTA+CGG | + | chr1.3:78772334-78772353 | None:intergenic | 30.0% |
| !! | TGTAGTTTTGCTATGAAGTA+AGG | - | chr1.3:78776315-78776334 | MS.gene029104:CDS | 30.0% |
| !! | TTTAATGAAGTCAAGTTGGA+TGG | - | chr1.3:78773057-78773076 | MS.gene029104:intron | 30.0% |
| !!! | AGTTCTTTTGATTTTGGTGT+TGG | + | chr1.3:78772267-78772286 | None:intergenic | 30.0% |
| AAACGAGAAAGGATTGCATT+GGG | + | chr1.3:78776243-78776262 | None:intergenic | 35.0% | |
| AAAGGTCTTCTATCTGTTCA+AGG | - | chr1.3:78776664-78776683 | MS.gene029104:intron | 35.0% | |
| AAATTTAGGTACCATGCTTG+TGG | + | chr1.3:78775996-78776015 | None:intergenic | 35.0% | |
| AACGTAGTGACGACATTTAT+AGG | - | chr1.3:78776638-78776657 | MS.gene029104:intron | 35.0% | |
| AATGCTGAGGAATTGGAAAA+GGG | - | chr1.3:78776982-78777001 | MS.gene029104:CDS | 35.0% | |
| AATGGTATCCTCAGCATAAA+AGG | + | chr1.3:78773037-78773056 | None:intergenic | 35.0% | |
| AATTTAAAGAGGACGGAGTA+TGG | - | chr1.3:78775324-78775343 | MS.gene029104:intron | 35.0% | |
| AGTTTATGGCTATTACTTGC+AGG | + | chr1.3:78774438-78774457 | None:intergenic | 35.0% | |
| ATACTCCGTCCTCTTTAAAT+TGG | + | chr1.3:78775325-78775344 | None:intergenic | 35.0% | |
| ATAGATTCTATGGAACTGTC+TGG | - | chr1.3:78774232-78774251 | MS.gene029104:intron | 35.0% | |
| ATGGTCAAATTTGCCTTTCT+TGG | + | chr1.3:78772867-78772886 | None:intergenic | 35.0% | |
| ATTCCAGAAAATAAACAGCC+TGG | - | chr1.3:78775299-78775318 | MS.gene029104:intron | 35.0% | |
| CAACATAATATCTTCAGCAC+CGG | + | chr1.3:78772774-78772793 | None:intergenic | 35.0% | |
| CAATCCTTTCTCGTTTCATA+AGG | - | chr1.3:78776247-78776266 | MS.gene029104:intron | 35.0% | |
| CATGTTTAGTCATAACCTCA+TGG | - | chr1.3:78775750-78775769 | MS.gene029104:intron | 35.0% | |
| CTAAACATGACAACAAAGCA+AGG | + | chr1.3:78775739-78775758 | None:intergenic | 35.0% | |
| CTACGGAAGATTGTAGAAAT+TGG | + | chr1.3:78772317-78772336 | None:intergenic | 35.0% | |
| GAATTAGTCACTTCCAAGAA+AGG | - | chr1.3:78772851-78772870 | MS.gene029104:intron | 35.0% | |
| GAATTCTCAAGAAACACTTG+TGG | - | chr1.3:78774882-78774901 | MS.gene029104:intron | 35.0% | |
| GACATGCACATCATATATTC+AGG | + | chr1.3:78775830-78775849 | None:intergenic | 35.0% | |
| GACGACATTTATAGGATGAA+AGG | - | chr1.3:78776646-78776665 | MS.gene029104:intron | 35.0% | |
| GACTACACTATATTGCAGTA+TGG | - | chr1.3:78774112-78774131 | MS.gene029104:intron | 35.0% | |
| GCATAAAAGGTCTGGATTAT+CGG | + | chr1.3:78773024-78773043 | None:intergenic | 35.0% | |
| GCCCCAACATTTAAATCTTA+AGG | - | chr1.3:78774581-78774600 | MS.gene029104:intron | 35.0% | |
| GGAGTTCATGACATATTTCA+AGG | - | chr1.3:78776889-78776908 | MS.gene029104:CDS | 35.0% | |
| GTGAACTTGGATTATGTTCT+TGG | - | chr1.3:78775351-78775370 | MS.gene029104:intron | 35.0% | |
| TAGCGAGAAGTTAATCCAAA+CGG | + | chr1.3:78773426-78773445 | None:intergenic | 35.0% | |
| TCTGAATCATATTCTCACAG+CGG | - | chr1.3:78772578-78772597 | MS.gene029104:CDS | 35.0% | |
| TGACAACACTGAAACACTTA+TGG | - | chr1.3:78773630-78773649 | MS.gene029104:intron | 35.0% | |
| TGACATATTTCAAGGTTCAC+CGG | - | chr1.3:78776897-78776916 | MS.gene029104:CDS | 35.0% | |
| TTAACTTCTCGCTATCACTT+CGG | - | chr1.3:78773432-78773451 | MS.gene029104:intron | 35.0% | |
| TTCTTTAGTTGCGGCAAAAA+CGG | - | chr1.3:78772748-78772767 | MS.gene029104:intron | 35.0% | |
| TTGCGAATAGCAGAAAACAA+CGG | + | chr1.3:78773609-78773628 | None:intergenic | 35.0% | |
| TTGGATTATGTTCTTGGCAT+TGG | - | chr1.3:78775357-78775376 | MS.gene029104:intron | 35.0% | |
| TTGTCCTTATGAAACGAGAA+AGG | + | chr1.3:78776254-78776273 | None:intergenic | 35.0% | |
| ! | AAATGATGATGATACCTTGC+CGG | + | chr1.3:78772480-78772499 | None:intergenic | 35.0% |
| ! | AATACTTTCTTTGTGCCGTT+TGG | - | chr1.3:78773408-78773427 | MS.gene029104:intron | 35.0% |
| ! | CTATCCCGTTATGGAATTTT+GGG | + | chr1.3:78773837-78773856 | None:intergenic | 35.0% |
| ! | GAACTTGCTTCAAGCTTATT+TGG | - | chr1.3:78772197-78772216 | MS.gene029104:CDS | 35.0% |
| ! | TAAATGTTGGGCTTTATGGT+TGG | + | chr1.3:78774001-78774020 | None:intergenic | 35.0% |
| ! | TATCCCGTTATGGAATTTTG+GGG | + | chr1.3:78773836-78773855 | None:intergenic | 35.0% |
| !! | ACTTCGGTGTTGTTAAATAG+CGG | - | chr1.3:78773448-78773467 | MS.gene029104:intron | 35.0% |
| !! | GAAAAATGTGAGTGCTACTT+AGG | + | chr1.3:78775701-78775720 | None:intergenic | 35.0% |
| !!! | CATGGCTTTTTTCTGTAACA+GGG | - | chr1.3:78776868-78776887 | MS.gene029104:CDS | 35.0% |
| !!! | TCTTTTGATTTTGGTGTTGG+TGG | + | chr1.3:78772264-78772283 | None:intergenic | 35.0% |
| AACTGTGACTGACAAGAAGA+GGG | - | chr1.3:78773924-78773943 | MS.gene029104:intron | 40.0% | |
| AGCAAGTACTAACCTTCTCA+AGG | + | chr1.3:78776439-78776458 | None:intergenic | 40.0% | |
| AGGAAACTTAGACCTTGAGA+AGG | - | chr1.3:78776424-78776443 | MS.gene029104:CDS | 40.0% | |
| ATATGTACAGGCTAGCAAGA+TGG | + | chr1.3:78775504-78775523 | None:intergenic | 40.0% | |
| ATGCTGAGGAATTGGAAAAG+GGG | - | chr1.3:78776983-78777002 | MS.gene029104:CDS | 40.0% | |
| CAAAATGCTCTGCTGCTATA+TGG | - | chr1.3:78774703-78774722 | MS.gene029104:intron | 40.0% | |
| CATGTGAATCTTCATGGTGA+TGG | + | chr1.3:78775972-78775991 | None:intergenic | 40.0% | |
| CGAATCAGACATCACTTCTT+TGG | - | chr1.3:78775161-78775180 | MS.gene029104:intron | 40.0% | |
| CGAGACACATATAACACAAG+CGG | - | chr1.3:78776780-78776799 | MS.gene029104:CDS | 40.0% | |
| CTGAAGCAAAAAGTCTTCGT+TGG | - | chr1.3:78776542-78776561 | MS.gene029104:intron | 40.0% | |
| GAAACGAGAAAGGATTGCAT+TGG | + | chr1.3:78776244-78776263 | None:intergenic | 40.0% | |
| GAACTTGAATGCTGAGGAAT+TGG | - | chr1.3:78776975-78776994 | MS.gene029104:CDS | 40.0% | |
| GAATGCTGAGGAATTGGAAA+AGG | - | chr1.3:78776981-78777000 | MS.gene029104:CDS | 40.0% | |
| GATTGCATTGGGAAGCAAAT+AGG | + | chr1.3:78776232-78776251 | None:intergenic | 40.0% | |
| GCACATCATATATTCAGGCT+TGG | + | chr1.3:78775825-78775844 | None:intergenic | 40.0% | |
| GCTGCACCTCATAATTAGAT+AGG | + | chr1.3:78774054-78774073 | None:intergenic | 40.0% | |
| GTCACTACGTTCCATCAATA+AGG | + | chr1.3:78776629-78776648 | None:intergenic | 40.0% | |
| TAACTGTGACTGACAAGAAG+AGG | - | chr1.3:78773923-78773942 | MS.gene029104:intron | 40.0% | |
| TAATACAGGTTTGGCGAATC+CGG | - | chr1.3:78772996-78773015 | MS.gene029104:intron | 40.0% | |
| TATCCTCAGCATAAAAGGTC+TGG | + | chr1.3:78773032-78773051 | None:intergenic | 40.0% | |
| TATTTCAAGGTTCACCGGAA+AGG | - | chr1.3:78776902-78776921 | MS.gene029104:CDS | 40.0% | |
| TCAATTAAGCGACATGAGTC+AGG | - | chr1.3:78776754-78776773 | MS.gene029104:CDS | 40.0% | |
| TCAGTTTCGCCAATAAAGCA+TGG | - | chr1.3:78776850-78776869 | MS.gene029104:CDS | 40.0% | |
| TGTGGTCATGTGAATCTTCA+TGG | + | chr1.3:78775978-78775997 | None:intergenic | 40.0% | |
| ! | AAATTCCATAACGGGATAGC+AGG | - | chr1.3:78773838-78773857 | MS.gene029104:CDS | 40.0% |
| ! | AATCCAGACCTTTTATGCTG+AGG | - | chr1.3:78773026-78773045 | MS.gene029104:intron | 40.0% |
| ! | CACTCACATTTTTCTACCCT+TGG | - | chr1.3:78775707-78775726 | MS.gene029104:intron | 40.0% |
| ! | GATTATGTTCTTGGCATTGG+AGG | - | chr1.3:78775360-78775379 | MS.gene029104:intron | 40.0% |
| ! | GCTATCCCGTTATGGAATTT+TGG | + | chr1.3:78773838-78773857 | None:intergenic | 40.0% |
| ! | TTGTCTTTGCTGTACTGTGA+GGG | - | chr1.3:78772805-78772824 | MS.gene029104:CDS | 40.0% |
| !! | CATATAGCAGCAGAGCATTT+TGG | + | chr1.3:78774705-78774724 | None:intergenic | 40.0% |
| !! | GATCATGATGATGGTGTTCA+TGG | + | chr1.3:78775942-78775961 | None:intergenic | 40.0% |
| !!! | GCATGGCTTTTTTCTGTAAC+AGG | - | chr1.3:78776867-78776886 | MS.gene029104:CDS | 40.0% |
| AAAGAGGACGGAGTATGGAA+AGG | - | chr1.3:78775329-78775348 | MS.gene029104:intron | 45.0% | |
| AAGAAGAGTGGTGAAGGGTT+TGG | + | chr1.3:78772240-78772259 | None:intergenic | 45.0% | |
| ACAGCCTGGCCAATTTAAAG+AGG | - | chr1.3:78775313-78775332 | MS.gene029104:intron | 45.0% | |
| ACATCACTTCTTTGGTCCAG+CGG | - | chr1.3:78775169-78775188 | MS.gene029104:intron | 45.0% | |
| ACTATATTGCAGTATGGCCC+CGG | - | chr1.3:78774118-78774137 | MS.gene029104:intron | 45.0% | |
| ACTGTGACTGACAAGAAGAG+GGG | - | chr1.3:78773925-78773944 | MS.gene029104:intron | 45.0% | |
| AGAAGAGTGGTGAAGGGTTT+GGG | + | chr1.3:78772239-78772258 | None:intergenic | 45.0% | |
| AGGGAAGAACTTGAATGCTG+AGG | - | chr1.3:78776969-78776988 | MS.gene029104:CDS | 45.0% | |
| ATGCATAGAAAGACCAAGCC+GGG | + | chr1.3:78774139-78774158 | None:intergenic | 45.0% | |
| ATGGTCATGGTCATGGCTAT+GGG | + | chr1.3:78775917-78775936 | None:intergenic | 45.0% | |
| ATTCGCCAACAAGATCAGTC+TGG | + | chr1.3:78775146-78775165 | None:intergenic | 45.0% | |
| CATGATCATAGTCACGATCC+TGG | - | chr1.3:78776374-78776393 | MS.gene029104:CDS | 45.0% | |
| CCGACCCCAAAATTCCATAA+CGG | - | chr1.3:78773829-78773848 | MS.gene029104:CDS | 45.0% | |
| CCTGGCCAATTTAAAGAGGA+CGG | - | chr1.3:78775317-78775336 | MS.gene029104:intron | 45.0% | |
| CGACCCCAAAATTCCATAAC+GGG | - | chr1.3:78773830-78773849 | MS.gene029104:CDS | 45.0% | |
| CTATAGGCTAACATGTGGCT+TGG | - | chr1.3:78776601-78776620 | MS.gene029104:CDS | 45.0% | |
| CTTCGTTGGCATTTATGTGC+TGG | - | chr1.3:78776556-78776575 | MS.gene029104:intron | 45.0% | |
| CTTGACGAGGTTAAGCCAAA+AGG | - | chr1.3:78773120-78773139 | MS.gene029104:intron | 45.0% | |
| GATGCATAGAAAGACCAAGC+CGG | + | chr1.3:78774140-78774159 | None:intergenic | 45.0% | |
| GATTCACATGACCACAAGCA+TGG | - | chr1.3:78775982-78776001 | MS.gene029104:intron | 45.0% | |
| GCGGTTATCAGGTGGAATAA+CGG | + | chr1.3:78772423-78772442 | None:intergenic | 45.0% | |
| GCTATAGCGCTATTGCATAG+CGG | - | chr1.3:78773470-78773489 | MS.gene029104:intron | 45.0% | |
| GGAGCATGGAAAACGAATTG+CGG | - | chr1.3:78772599-78772618 | MS.gene029104:intron | 45.0% | |
| GGAGTATGGAAAGGTGAACT+TGG | - | chr1.3:78775338-78775357 | MS.gene029104:intron | 45.0% | |
| GTGGAAAGAAGAGTGGTGAA+GGG | + | chr1.3:78772245-78772264 | None:intergenic | 45.0% | |
| GTTATCAGGTGGAATAACGG+TGG | + | chr1.3:78772420-78772439 | None:intergenic | 45.0% | |
| TCAATAGCAGCAGAGCAGTT+TGG | + | chr1.3:78774094-78774113 | None:intergenic | 45.0% | |
| TTGCACCAGACTGATCTTGT+TGG | - | chr1.3:78775138-78775157 | MS.gene029104:intron | 45.0% | |
| TTGGGAGATAGCAGCTATAG+TGG | - | chr1.3:78773547-78773566 | MS.gene029104:intron | 45.0% | |
| TTGTTTGTCCTTGGCTCATC+TGG | + | chr1.3:78776937-78776956 | None:intergenic | 45.0% | |
| ! | GATGATGGTGTTCATGGTCA+TGG | + | chr1.3:78775936-78775955 | None:intergenic | 45.0% |
| ! | GTTGTCTTTGCTGTACTGTG+AGG | - | chr1.3:78772804-78772823 | MS.gene029104:CDS | 45.0% |
| ! | TGGCATTGGAGGCTTTGATT+TGG | - | chr1.3:78775371-78775390 | MS.gene029104:intron | 45.0% |
| ! | TGTCTTTGCTGTACTGTGAG+GGG | - | chr1.3:78772806-78772825 | MS.gene029104:CDS | 45.0% |
| ! | TTGGTTGATGCGAAACATGC+TGG | - | chr1.3:78773090-78773109 | MS.gene029104:intron | 45.0% |
| !! | AATCTTCATGGTGATGGTGG+TGG | + | chr1.3:78775966-78775985 | None:intergenic | 45.0% |
| !! | AGAGGCGAGTGAGTTTGTTA+TGG | + | chr1.3:78772346-78772365 | None:intergenic | 45.0% |
| !! | AGCAGAGCATTTTGGTGTAG+TGG | + | chr1.3:78774697-78774716 | None:intergenic | 45.0% |
| !! | CTGAAATATGTAGCGGGCTA+TGG | - | chr1.3:78774800-78774819 | MS.gene029104:intron | 45.0% |
| !! | GAGAGCGCTGTTAATGATGA+AGG | - | chr1.3:78775871-78775890 | MS.gene029104:intron | 45.0% |
| !! | GTGAATCTTCATGGTGATGG+TGG | + | chr1.3:78775969-78775988 | None:intergenic | 45.0% |
| !! | GTGGCTTGGTACCTTATTGA+TGG | - | chr1.3:78776615-78776634 | MS.gene029104:CDS | 45.0% |
| !! | GTTGGATGGTGTTGTCACTT+TGG | - | chr1.3:78773071-78773090 | MS.gene029104:intron | 45.0% |
| !! | TGGCCAGGCTGTTTATTTTC+TGG | + | chr1.3:78775305-78775324 | None:intergenic | 45.0% |
| !! | TTCTTTGGTCCAGCGGATTA+GGG | - | chr1.3:78775176-78775195 | MS.gene029104:intron | 45.0% |
| !! | TTGGAGGCTTTGATTTGGAG+AGG | - | chr1.3:78775376-78775395 | MS.gene029104:intron | 45.0% |
| !!! | ACCATCATCACCGGTTTTCT+CGG | - | chr1.3:78772452-78772471 | MS.gene029104:intron | 45.0% |
| !!! | CCGTTATGGAATTTTGGGGT+CGG | + | chr1.3:78773832-78773851 | None:intergenic | 45.0% |
| !! | TATATATATATGTAAAAAAT+AGG | + | chr1.3:78776118-78776137 | None:intergenic | 5.0% |
| AAGGTTCACCGGAAAGGTTG+TGG | - | chr1.3:78776908-78776927 | MS.gene029104:CDS | 50.0% | |
| AATAACGGTGGAGACGTCGT+CGG | + | chr1.3:78772408-78772427 | None:intergenic | 50.0% | |
| ACAAAGCAAGGCAGTTGCCA+AGG | + | chr1.3:78775727-78775746 | None:intergenic | 50.0% | |
| ACCGAGAAAACCGGTGATGA+TGG | + | chr1.3:78772456-78772475 | None:intergenic | 50.0% | |
| AGACACTAACCCTAATCCGC+TGG | + | chr1.3:78775188-78775207 | None:intergenic | 50.0% | |
| ATTCCTGCCACCATCATCAC+CGG | - | chr1.3:78772443-78772462 | MS.gene029104:intron | 50.0% | |
| CAAAGCAAGGCAGTTGCCAA+GGG | + | chr1.3:78775726-78775745 | None:intergenic | 50.0% | |
| CATATTCTCACAGCGGAGCA+TGG | - | chr1.3:78772585-78772604 | MS.gene029104:intron | 50.0% | |
| CATGGTCATGGTCATGGCTA+TGG | + | chr1.3:78775918-78775937 | None:intergenic | 50.0% | |
| CATGGTCATGGTCATGGTCA+TGG | + | chr1.3:78775924-78775943 | None:intergenic | 50.0% | |
| CCGTCCTCTTTAAATTGGCC+AGG | + | chr1.3:78775320-78775339 | None:intergenic | 50.0% | |
| CGAGGTTAAGCCAAAAGGTG+TGG | - | chr1.3:78773125-78773144 | MS.gene029104:intron | 50.0% | |
| CGCCGCGACAACTATTGTTT+CGG | - | chr1.3:78774650-78774669 | MS.gene029104:intron | 50.0% | |
| CTGAACTACGTAGTGCGTTG+TGG | - | chr1.3:78774181-78774200 | MS.gene029104:intron | 50.0% | |
| CTGTGACTGACAAGAAGAGG+GGG | - | chr1.3:78773926-78773945 | MS.gene029104:intron | 50.0% | |
| GAGATGAGGTGGATGATGAG+AGG | + | chr1.3:78772364-78772383 | None:intergenic | 50.0% | |
| GGCCGAAACAATAGTTGTCG+CGG | + | chr1.3:78774655-78774674 | None:intergenic | 50.0% | |
| GGTGGAAAGAAGAGTGGTGA+AGG | + | chr1.3:78772246-78772265 | None:intergenic | 50.0% | |
| GGTGTTCATGGTCATGGTCA+TGG | + | chr1.3:78775930-78775949 | None:intergenic | 50.0% | |
| TCACGATCCTGGCGTTTCAT+CGG | - | chr1.3:78776385-78776404 | MS.gene029104:CDS | 50.0% | |
| TGCATAGAAAGACCAAGCCG+GGG | + | chr1.3:78774138-78774157 | None:intergenic | 50.0% | |
| TTAGTTGCGGCAAAAACGGC+CGG | - | chr1.3:78772752-78772771 | MS.gene029104:intron | 50.0% | |
| ! | CTTCTTTGGTCCAGCGGATT+AGG | - | chr1.3:78775175-78775194 | MS.gene029104:intron | 50.0% |
| ! | GCCAAAAGGTGTGGTCAATG+AGG | - | chr1.3:78773134-78773153 | MS.gene029104:intron | 50.0% |
| ! | GCCTCATTGACCACACCTTT+TGG | + | chr1.3:78773138-78773157 | None:intergenic | 50.0% |
| ! | GGGTTTGGGTTTGCGATAAG+CGG | + | chr1.3:78772225-78772244 | None:intergenic | 50.0% |
| ! | GGTGGTGGTGATCATGATGA+TGG | + | chr1.3:78775951-78775970 | None:intergenic | 50.0% |
| ! | TCCATAACGGGATAGCAGGA+TGG | - | chr1.3:78773842-78773861 | MS.gene029104:CDS | 50.0% |
| ! | TCGGTGAGCATAGTTTGCGA+AGG | - | chr1.3:78776404-78776423 | MS.gene029104:CDS | 50.0% |
| !! | AGCAGAGCAGTTTGGTGATG+CGG | + | chr1.3:78774086-78774105 | None:intergenic | 50.0% |
| !! | AGTTTGGTGATGCGGTGAGA+TGG | + | chr1.3:78774078-78774097 | None:intergenic | 50.0% |
| !! | GAGAAAACCGGTGATGATGG+TGG | + | chr1.3:78772453-78772472 | None:intergenic | 50.0% |
| !! | GGTGTTGGTGGAAAGAAGAG+TGG | + | chr1.3:78772252-78772271 | None:intergenic | 50.0% |
| !! | TGATGATGGTGGCAGGAATG+CGG | + | chr1.3:78772442-78772461 | None:intergenic | 50.0% |
| !! | TGCTGGTTTGCATCTTGACG+AGG | - | chr1.3:78773107-78773126 | MS.gene029104:intron | 50.0% |
| !! | TTTTGGTGTAGTGGCCGCAA+CGG | + | chr1.3:78774688-78774707 | None:intergenic | 50.0% |
| !!! | ATCACCGGTTTTCTCGGTTC+CGG | - | chr1.3:78772458-78772477 | MS.gene029104:intron | 50.0% |
| AAGCGGTGTCTGTGCTTCAG+AGG | - | chr1.3:78776797-78776816 | MS.gene029104:CDS | 55.0% | |
| AAGGTCTGGATTATCGGCGC+CGG | + | chr1.3:78773018-78773037 | None:intergenic | 55.0% | |
| ATGCTCACCGATGAAACGCC+AGG | + | chr1.3:78776395-78776414 | None:intergenic | 55.0% | |
| CAATAGTTGTCGCGGCGAGA+TGG | + | chr1.3:78774647-78774666 | None:intergenic | 55.0% | |
| CTTGCCGGAACCGAGAAAAC+CGG | + | chr1.3:78772465-78772484 | None:intergenic | 55.0% | |
| GCAGGAATGCGGTTATCAGG+TGG | + | chr1.3:78772431-78772450 | None:intergenic | 55.0% | |
| GCCATCCTGCTATCCCGTTA+TGG | + | chr1.3:78773846-78773865 | None:intergenic | 55.0% | |
| GGCCACTATAGCTTCCGTTG+CGG | - | chr1.3:78774671-78774690 | MS.gene029104:intron | 55.0% | |
| GTGGCAGGAATGCGGTTATC+AGG | + | chr1.3:78772434-78772453 | None:intergenic | 55.0% | |
| TCTGGCTGCCACAACCTTTC+CGG | + | chr1.3:78776919-78776938 | None:intergenic | 55.0% | |
| !! | AAACCGGTGATGATGGTGGC+AGG | + | chr1.3:78772449-78772468 | None:intergenic | 55.0% |
| ATTGCAGTATGGCCCCGGCT+TGG | - | chr1.3:78774123-78774142 | MS.gene029104:intron | 60.0% | |
| GAGTCGTCGGTGGTTTGAGG+CGG | + | chr1.3:78772386-78772405 | None:intergenic | 60.0% | |
| GGCCGCAACGGAAGCTATAG+TGG | + | chr1.3:78774676-78774695 | None:intergenic | 60.0% | |
| TCGGAGTCGTCGGTGGTTTG+AGG | + | chr1.3:78772389-78772408 | None:intergenic | 60.0% | |
| TGTGGCAGCCAGATGAGCCA+AGG | - | chr1.3:78776926-78776945 | MS.gene029104:CDS | 60.0% | |
| ! | CGGTTTTCTCGGTTCCGGCA+AGG | - | chr1.3:78772463-78772482 | MS.gene029104:intron | 60.0% |
| ! | GGTGGTTTGAGGCGGAGATG+AGG | + | chr1.3:78772378-78772397 | None:intergenic | 60.0% |
| ! | GGTTTGAGGCGGAGATGAGG+TGG | + | chr1.3:78772375-78772394 | None:intergenic | 60.0% |
| GGAGACGTCGTCGGAGTCGT+CGG | + | chr1.3:78772399-78772418 | None:intergenic | 65.0% | |
| GACGTCGTCGGAGTCGTCGG+TGG | + | chr1.3:78772396-78772415 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 78772179 | 78777026 | 78772179 | ID=MS.gene029104 |
| chr1.3 | mRNA | 78772179 | 78777026 | 78772179 | ID=MS.gene029104.t1;Parent=MS.gene029104 |
| chr1.3 | exon | 78776721 | 78777026 | 78776721 | ID=MS.gene029104.t1.exon1;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78776721 | 78777026 | 78776721 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78776570 | 78776635 | 78776570 | ID=MS.gene029104.t1.exon2;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78776570 | 78776635 | 78776570 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78776300 | 78776480 | 78776300 | ID=MS.gene029104.t1.exon3;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78776300 | 78776480 | 78776300 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78776005 | 78776201 | 78776005 | ID=MS.gene029104.t1.exon4;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78776005 | 78776201 | 78776005 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78774008 | 78774058 | 78774008 | ID=MS.gene029104.t1.exon5;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78774008 | 78774058 | 78774008 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78773808 | 78773899 | 78773808 | ID=MS.gene029104.t1.exon6;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78773808 | 78773899 | 78773808 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78773202 | 78773338 | 78773202 | ID=MS.gene029104.t1.exon7;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78773202 | 78773338 | 78773202 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78772760 | 78772842 | 78772760 | ID=MS.gene029104.t1.exon8;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78772760 | 78772842 | 78772760 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78772494 | 78772598 | 78772494 | ID=MS.gene029104.t1.exon9;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78772494 | 78772598 | 78772494 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| chr1.3 | exon | 78772179 | 78772316 | 78772179 | ID=MS.gene029104.t1.exon10;Parent=MS.gene029104.t1 |
| chr1.3 | CDS | 78772179 | 78772316 | 78772179 | ID=cds.MS.gene029104.t1;Parent=MS.gene029104.t1 |
| Gene Sequence |
| Protein sequence |
