AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75176


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75176.t1 MTR_1g115505 98.891 451 3 1 1 451 1 449 0.0 910
MS.gene75176.t1 MTR_8g071110 52.414 435 174 5 21 451 2 407 3.24e-148 428
MS.gene75176.t1 MTR_5g044050 36.772 378 193 7 83 449 24 366 1.90e-72 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75176.t1 AT1G80480 78.005 391 77 2 61 451 63 444 0.0 574
MS.gene75176.t1 AT1G15730 71.531 418 110 3 36 451 38 448 0.0 573
MS.gene75176.t1 AT1G26520 37.398 369 185 6 89 449 42 372 1.38e-75 241

Find 121 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGCTTCAAGCTTATT+TGG 0.162746 1.1:-81321913 MS.gene75176:CDS
CTTCTTTGGTCCAGCGGATT+AGG 0.207261 1.1:-81318934 MS.gene75176:CDS
ATGGTCAAATTTGCCTTTCT+TGG 0.221608 1.1:+81321246 None:intergenic
ATACTCCGTCCTCTTTAAAT+TGG 0.236187 1.1:+81318787 None:intergenic
GAATGAAAGATTTGTCTTTC+AGG 0.236233 1.1:-81317423 MS.gene75176:intron
GTGAACTTGGATTATGTTCT+TGG 0.237961 1.1:-81318758 MS.gene75176:CDS
TCTGGCTGCCACAACCTTTC+CGG 0.245017 1.1:+81317197 None:intergenic
CGAATCAGACATCACTTCTT+TGG 0.265430 1.1:-81318948 MS.gene75176:CDS
TTGTTTGTCCTTGGCTCATC+TGG 0.268152 1.1:+81317179 None:intergenic
GCCTCATTGACCACACCTTT+TGG 0.295052 1.1:+81320975 None:intergenic
CTACGGAAGATTGTAGAAAT+TGG 0.299599 1.1:+81321796 None:intergenic
TGATCGAATAATCGTAAATA+AGG 0.306250 1.1:-81320931 MS.gene75176:intron
AGAAGAGTGGTGAAGGGTTT+GGG 0.309735 1.1:+81321874 None:intergenic
GAACTTGAATGCTGAGGAAT+TGG 0.310817 1.1:-81317138 MS.gene75176:CDS
AATGGTATCCTCAGCATAAA+AGG 0.324805 1.1:+81321076 None:intergenic
AATTTAAAGAGGACGGAGTA+TGG 0.326999 1.1:-81318785 MS.gene75176:CDS
AAGAAGAGTGGTGAAGGGTT+TGG 0.330035 1.1:+81321873 None:intergenic
TGGCATTGGAGGCTTTGATT+TGG 0.346009 1.1:-81318738 MS.gene75176:CDS
TTCTTTGGTCCAGCGGATTA+GGG 0.359042 1.1:-81318933 MS.gene75176:intron
GCATAAAAGGTCTGGATTAT+CGG 0.359801 1.1:+81321089 None:intergenic
TAATACAGGTTTGGCGAATC+CGG 0.361283 1.1:-81321114 MS.gene75176:intron
GTGGCAGGAATGCGGTTATC+AGG 0.367337 1.1:+81321679 None:intergenic
GTCACTACGTTCCATCAATA+AGG 0.373389 1.1:+81317487 None:intergenic
AAAACAATCTTGTTTGTCCT+TGG 0.389225 1.1:+81317170 None:intergenic
CATGGTCATGGTCATGGCTA+TGG 0.392483 1.1:+81318194 None:intergenic
TTGGATTATGTTCTTGGCAT+TGG 0.395925 1.1:-81318752 MS.gene75176:CDS
TTTGGTGAGATTGATATTGA+TGG 0.412472 1.1:-81321385 MS.gene75176:CDS
AGAGGCGAGTGAGTTTGTTA+TGG 0.423350 1.1:+81321767 None:intergenic
GAAATTGGAGATGAGTTTAA+CGG 0.433464 1.1:+81321811 None:intergenic
GTGGCTTGGTACCTTATTGA+TGG 0.439152 1.1:-81317498 MS.gene75176:CDS
AAATGATGATGATACCTTGC+CGG 0.444794 1.1:+81321633 None:intergenic
GGAGTTCATGACATATTTCA+AGG 0.445771 1.1:-81317224 MS.gene75176:CDS
AACGTAGTGACGACATTTAT+AGG 0.447587 1.1:-81317475 MS.gene75176:CDS
CCGTCCTCTTTAAATTGGCC+AGG 0.458430 1.1:+81318792 None:intergenic
TGTGGTCATGTGAATCTTCA+TGG 0.466615 1.1:+81318134 None:intergenic
TATCCTCAGCATAAAAGGTC+TGG 0.467827 1.1:+81321081 None:intergenic
GAATGCTGAGGAATTGGAAA+AGG 0.468936 1.1:-81317132 MS.gene75176:CDS
GATCATGATGATGGTGTTCA+TGG 0.472248 1.1:+81318170 None:intergenic
AAAGGTCTTCTATCTGTTCA+AGG 0.474112 1.1:-81317449 MS.gene75176:CDS
TTGTCTTTGCTGTACTGTGA+GGG 0.479297 1.1:-81321305 MS.gene75176:CDS
CATATTGTTATTGAGACTAC+TGG 0.484719 1.1:-81321226 MS.gene75176:intron
TTGCACCAGACTGATCTTGT+TGG 0.485087 1.1:-81318971 MS.gene75176:intron
CAGTAGTCTCAATAACAATA+TGG 0.488237 1.1:+81321227 None:intergenic
ATGGTCATGGTCATGGCTAT+GGG 0.492078 1.1:+81318195 None:intergenic
CTATAGGCTAACATGTGGCT+TGG 0.493336 1.1:-81317512 MS.gene75176:intron
GATTATGTTCTTGGCATTGG+AGG 0.493460 1.1:-81318749 MS.gene75176:CDS
GAATTAGTCACTTCCAAGAA+AGG 0.495832 1.1:-81321259 MS.gene75176:CDS
ACCGAGAAAACCGGTGATGA+TGG 0.498944 1.1:+81321657 None:intergenic
TCACGATCCTGGCGTTTCAT+CGG 0.503113 1.1:-81317728 MS.gene75176:CDS
TTCTTAGTATCACAGCAAAC+AGG 0.504205 1.1:+81317100 None:intergenic
GGAGTATGGAAAGGTGAACT+TGG 0.507746 1.1:-81318771 MS.gene75176:CDS
AATTGCGGTTATTGAAAATG+AGG 0.508358 1.1:-81321496 MS.gene75176:intron
AATGCTGAGGAATTGGAAAA+GGG 0.512342 1.1:-81317131 MS.gene75176:CDS
GTTGGATGGTGTTGTCACTT+TGG 0.513457 1.1:-81321039 MS.gene75176:CDS
GTTTGTTATGGTTGTTACTA+CGG 0.516237 1.1:+81321779 None:intergenic
TCGGAGTCGTCGGTGGTTTG+AGG 0.520426 1.1:+81321724 None:intergenic
CATGGTCATGGTCATGGTCA+TGG 0.522744 1.1:+81318188 None:intergenic
TGACATATTTCAAGGTTCAC+CGG 0.523489 1.1:-81317216 MS.gene75176:CDS
GGAGACGTCGTCGGAGTCGT+CGG 0.528650 1.1:+81321714 None:intergenic
TTTAATGAAGTCAAGTTGGA+TGG 0.529204 1.1:-81321053 MS.gene75176:CDS
CTTGCCGGAACCGAGAAAAC+CGG 0.529351 1.1:+81321648 None:intergenic
GGTGTTCATGGTCATGGTCA+TGG 0.532202 1.1:+81318182 None:intergenic
AATCTTCATGGTGATGGTGG+TGG 0.536012 1.1:+81318146 None:intergenic
TATTGATGGTTCTTTAGTTG+CGG 0.539178 1.1:-81321371 MS.gene75176:CDS
CTTGACGAGGTTAAGCCAAA+AGG 0.540274 1.1:-81320990 MS.gene75176:CDS
ATTCCTGCCACCATCATCAC+CGG 0.540312 1.1:-81321667 MS.gene75176:CDS
AAACCGGTGATGATGGTGGC+AGG 0.542945 1.1:+81321664 None:intergenic
CATATTCTCACAGCGGAGCA+TGG 0.544248 1.1:-81321525 MS.gene75176:CDS
ATGCTCACCGATGAAACGCC+AGG 0.547926 1.1:+81317721 None:intergenic
TTGGTTGATGCGAAACATGC+TGG 0.549484 1.1:-81321020 MS.gene75176:CDS
GCGGTTATCAGGTGGAATAA+CGG 0.551353 1.1:+81321690 None:intergenic
CATGATCATAGTCACGATCC+TGG 0.552341 1.1:-81317739 MS.gene75176:CDS
GGTGGTGGTGATCATGATGA+TGG 0.553558 1.1:+81318161 None:intergenic
GAGAGCGCTGTTAATGATGA+AGG 0.554591 1.1:-81318238 MS.gene75176:CDS
ATTCCAGAAAATAAACAGCC+TGG 0.556534 1.1:-81318810 MS.gene75176:intron
AAGGTTCACCGGAAAGGTTG+TGG 0.556980 1.1:-81317205 MS.gene75176:CDS
GACGACATTTATAGGATGAA+AGG 0.558665 1.1:-81317467 MS.gene75176:CDS
TATTTCAAGGTTCACCGGAA+AGG 0.560823 1.1:-81317211 MS.gene75176:CDS
GGGTTTGGGTTTGCGATAAG+CGG 0.562113 1.1:+81321888 None:intergenic
CATGTGAATCTTCATGGTGA+TGG 0.566710 1.1:+81318140 None:intergenic
GATATTATGTTGTTGAACAA+TGG 0.568349 1.1:-81321328 MS.gene75176:CDS
AGACACTAACCCTAATCCGC+TGG 0.576738 1.1:+81318924 None:intergenic
AGCAAGTACTAACCTTCTCA+AGG 0.584526 1.1:+81317677 None:intergenic
AAAGAGGACGGAGTATGGAA+AGG 0.586024 1.1:-81318780 MS.gene75176:CDS
GTGAATCTTCATGGTGATGG+TGG 0.586196 1.1:+81318143 None:intergenic
TTGGAGGCTTTGATTTGGAG+AGG 0.586416 1.1:-81318733 MS.gene75176:intron
GGTGGAAAGAAGAGTGGTGA+AGG 0.586615 1.1:+81321867 None:intergenic
TGCTGGTTTGCATCTTGACG+AGG 0.587527 1.1:-81321003 MS.gene75176:CDS
GGTTTGAGGCGGAGATGAGG+TGG 0.587638 1.1:+81321738 None:intergenic
GGTGTTGGTGGAAAGAAGAG+TGG 0.592017 1.1:+81321861 None:intergenic
CAACATAATATCTTCAGCAC+CGG 0.592357 1.1:+81321339 None:intergenic
TTCAGTGAAACAAAACGCCA+TGG 0.593485 1.1:+81321933 None:intergenic
ACAGCCTGGCCAATTTAAAG+AGG 0.594420 1.1:-81318796 MS.gene75176:CDS
GCCAAAAGGTGTGGTCAATG+AGG 0.599909 1.1:-81320976 MS.gene75176:CDS
AAATTTAGGTACCATGCTTG+TGG 0.601243 1.1:+81318116 None:intergenic
GTTGTCTTTGCTGTACTGTG+AGG 0.604741 1.1:-81321306 MS.gene75176:CDS
GACGTCGTCGGAGTCGTCGG+TGG 0.608943 1.1:+81321717 None:intergenic
GGTGGTTTGAGGCGGAGATG+AGG 0.610253 1.1:+81321735 None:intergenic
GATGATGGTGTTCATGGTCA+TGG 0.610283 1.1:+81318176 None:intergenic
AGGGAAGAACTTGAATGCTG+AGG 0.611753 1.1:-81317144 MS.gene75176:CDS
GTGGAAAGAAGAGTGGTGAA+GGG 0.612512 1.1:+81321868 None:intergenic
ACATCACTTCTTTGGTCCAG+CGG 0.614631 1.1:-81318940 MS.gene75176:CDS
TGTCTTTGCTGTACTGTGAG+GGG 0.617492 1.1:-81321304 MS.gene75176:CDS
AAGGTCTGGATTATCGGCGC+CGG 0.617720 1.1:+81321095 None:intergenic
GCAGGAATGCGGTTATCAGG+TGG 0.618572 1.1:+81321682 None:intergenic
CCTGGCCAATTTAAAGAGGA+CGG 0.624870 1.1:-81318792 MS.gene75176:CDS
TCGGTGAGCATAGTTTGCGA+AGG 0.626638 1.1:-81317709 MS.gene75176:CDS
GAGTCGTCGGTGGTTTGAGG+CGG 0.627298 1.1:+81321727 None:intergenic
AGGAAACTTAGACCTTGAGA+AGG 0.627667 1.1:-81317689 MS.gene75176:intron
GATTCACATGACCACAAGCA+TGG 0.628690 1.1:-81318127 MS.gene75176:intron
TGTGGCAGCCAGATGAGCCA+AGG 0.631087 1.1:-81317187 MS.gene75176:CDS
GAGATGAGGTGGATGATGAG+AGG 0.634300 1.1:+81321749 None:intergenic
CGAGGTTAAGCCAAAAGGTG+TGG 0.651456 1.1:-81320985 MS.gene75176:CDS
GAGAAAACCGGTGATGATGG+TGG 0.657464 1.1:+81321660 None:intergenic
ATGCTGAGGAATTGGAAAAG+GGG 0.668894 1.1:-81317130 MS.gene75176:CDS
GTTATCAGGTGGAATAACGG+TGG 0.683146 1.1:+81321693 None:intergenic
TGATGATGGTGGCAGGAATG+CGG 0.686059 1.1:+81321671 None:intergenic
AATAACGGTGGAGACGTCGT+CGG 0.694029 1.1:+81321705 None:intergenic
GGAGCATGGAAAACGAATTG+CGG 0.698183 1.1:-81321511 MS.gene75176:CDS
ATTCAGATATCATTCTAACA+AGG 0.703033 1.1:+81321278 None:intergenic
TCTGAATCATATTCTCACAG+CGG 0.771767 1.1:-81321532 MS.gene75176:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTATTTTTATTTAAGAA+TGG - chr1.1:81318657-81318676 MS.gene75176:intron 10.0%
!!! AAGTAAAATAAGATATTTTT+TGG + chr1.1:81319312-81319331 None:intergenic 10.0%
!!! ATCTAATTTTATTATTTGAA+TGG - chr1.1:81321117-81321136 MS.gene75176:intron 10.0%
!!! TCTTAAGTTTTTTTTTTTTT+TGG - chr1.1:81318953-81318972 MS.gene75176:CDS 10.0%
!! AAAAATTCTATATCAAGTTA+TGG - chr1.1:81318306-81318325 MS.gene75176:intron 15.0%
!! AAAACTTAAGATTTAAATGT+TGG + chr1.1:81318944-81318963 None:intergenic 15.0%
!! AAACTTAAGATTTAAATGTT+GGG + chr1.1:81318943-81318962 None:intergenic 15.0%
!! ACTAATTTATACTTATTACA+GGG - chr1.1:81318140-81318159 MS.gene75176:CDS 15.0%
!! AGCATTAACATAAAAAATAA+AGG + chr1.1:81321451-81321470 None:intergenic 15.0%
!!! ATATATTTTATGAAACTGTA+TGG - chr1.1:81319787-81319806 MS.gene75176:intron 15.0%
!!! ATTAATTTGTCTTATTCATT+TGG - chr1.1:81321410-81321429 MS.gene75176:intron 15.0%
!!! TAATTTTATTATTTGAATGG+TGG - chr1.1:81321120-81321139 MS.gene75176:intron 15.0%
!!! TTTTCAATTGTTTAAGAAAA+AGG - chr1.1:81320355-81320374 MS.gene75176:intron 15.0%
!!! TTTTTCATTGATGAAAAATA+TGG - chr1.1:81318173-81318192 MS.gene75176:CDS 15.0%
!!! TTTTTCTTAAACAATTGAAA+AGG + chr1.1:81320356-81320375 None:intergenic 15.0%
!! ATAATTCAAAATTCGCTATA+TGG + chr1.1:81318283-81318302 None:intergenic 20.0%
!! GACTAATTTATACTTATTAC+AGG - chr1.1:81318139-81318158 MS.gene75176:CDS 20.0%
!! TAAAAGCTTATAGATGTTAA+TGG + chr1.1:81319948-81319967 None:intergenic 20.0%
!! TAAAAGTTTATAGATGTTCA+TGG + chr1.1:81319337-81319356 None:intergenic 20.0%
!! TAAAATTGAACTGCTTATTA+GGG - chr1.1:81317870-81317889 MS.gene75176:intron 20.0%
!! TAACTAAATAATGTACAGTA+TGG - chr1.1:81318239-81318258 MS.gene75176:CDS 20.0%
!! TCCCAGTTAAAATAAATTTA+TGG + chr1.1:81319993-81320012 None:intergenic 20.0%
!! TCTCAGTTAAAATAAGTTTA+TGG + chr1.1:81319382-81319401 None:intergenic 20.0%
!! TGACAAATCTTGTAAAAAAT+AGG + chr1.1:81321014-81321033 None:intergenic 20.0%
!! TGTATGAAAGTTTCAAATAA+CGG + chr1.1:81318798-81318817 None:intergenic 20.0%
!! TTTCATAAGGACAAATTATA+AGG - chr1.1:81321187-81321206 MS.gene75176:intron 20.0%
!!! AAATCTTAAGGGATTTTTTT+TGG - chr1.1:81319523-81319542 MS.gene75176:intron 20.0%
!!! AACTAACATACTTTTTCTAT+AGG - chr1.1:81321512-81321531 MS.gene75176:CDS 20.0%
!!! AGCCATAAATTTATTTTAAC+TGG - chr1.1:81319988-81320007 MS.gene75176:intron 20.0%
!!! ATGAATAGTTCTTTTGATTT+TGG + chr1.1:81317203-81317222 None:intergenic 20.0%
!!! GAATTTTCAATTTCATTATG+AGG - chr1.1:81319545-81319564 MS.gene75176:intron 20.0%
!!! GCCATAAATTTATTTTAACT+GGG - chr1.1:81319989-81320008 MS.gene75176:intron 20.0%
!!! TATTGTTTTGGAATTTACAA+TGG - chr1.1:81318889-81318908 MS.gene75176:intron 20.0%
!!! TGAACATCTATAAACTTTTA+AGG - chr1.1:81319337-81319356 MS.gene75176:intron 20.0%
!!! TTAACATCTATAAGCTTTTA+AGG - chr1.1:81319948-81319967 MS.gene75176:intron 20.0%
! AAATTCTCAAGAAATGCTTA+TGG - chr1.1:81319188-81319207 MS.gene75176:intron 25.0%
! AACAGTGAAGATTTAAATGT+TGG + chr1.1:81319446-81319465 None:intergenic 25.0%
! AATAATGTACAGTATGGTTA+TGG - chr1.1:81318245-81318264 MS.gene75176:CDS 25.0%
! AATGTAAGTTTACTTCTTCT+CGG - chr1.1:81320386-81320405 MS.gene75176:intron 25.0%
! AATTTATACTTATTACAGGG+TGG - chr1.1:81318143-81318162 MS.gene75176:CDS 25.0%
! ACAGTGAAGATTTAAATGTT+GGG + chr1.1:81319445-81319464 None:intergenic 25.0%
! ACTCAACAATTAGATACATT+AGG + chr1.1:81320551-81320570 None:intergenic 25.0%
! ATATTTAGTCATAACCTCAT+GGG - chr1.1:81320682-81320701 MS.gene75176:intron 25.0%
! ATCCCTTAAGATTTAAATGT+TGG + chr1.1:81319517-81319536 None:intergenic 25.0%
! ATCTAGTACAATCAAAATGT+TGG - chr1.1:81318458-81318477 MS.gene75176:intron 25.0%
! ATTCAGATATCATTCTAACA+AGG + chr1.1:81317765-81317784 None:intergenic 25.0%
! CAACTTGACTTCATTAAAAA+TGG + chr1.1:81317985-81318004 None:intergenic 25.0%
! CTTCTCATATTAGTTGAAAT+CGG - chr1.1:81319888-81319907 MS.gene75176:intron 25.0%
! GAAAATAGTGTATCATTCTT+AGG - chr1.1:81318714-81318733 MS.gene75176:intron 25.0%
! GAATTTCCTATCTAATTATG+AGG - chr1.1:81318975-81318994 MS.gene75176:intron 25.0%
! GATATTATGTTGTTGAACAA+TGG - chr1.1:81317712-81317731 MS.gene75176:CDS 25.0%
! GTAAAATTGAACTGCTTATT+AGG - chr1.1:81317869-81317888 MS.gene75176:intron 25.0%
! TATTGAACTGAAATATGTAG+CGG - chr1.1:81319724-81319743 MS.gene75176:intron 25.0%
! TCCCTTAAGATTTAAATGTT+GGG + chr1.1:81319516-81319535 None:intergenic 25.0%
! TCTAGTACAATCAAAATGTT+GGG - chr1.1:81318459-81318478 MS.gene75176:intron 25.0%
! TCTTAAACAATTGAAAAGGA+AGG + chr1.1:81320352-81320371 None:intergenic 25.0%
! TCTTATTCATTTGGATACTT+GGG - chr1.1:81321419-81321438 MS.gene75176:intron 25.0%
! TGATCGAATAATCGTAAATA+AGG - chr1.1:81318109-81318128 MS.gene75176:intron 25.0%
! TGCATATGATTATTGTAGTT+TGG - chr1.1:81317637-81317656 MS.gene75176:intron 25.0%
! TGGGTATTTAGATATTTCTT+CGG - chr1.1:81320701-81320720 MS.gene75176:intron 25.0%
! TGTTTGTATTAATACAGGTT+TGG - chr1.1:81317917-81317936 MS.gene75176:intron 25.0%
! TTGACTGTTTGTATTAATAC+AGG - chr1.1:81317912-81317931 MS.gene75176:intron 25.0%
!! ACAAACAAGATTGTTTTCAT+AGG - chr1.1:81321876-81321895 MS.gene75176:CDS 25.0%
!! ATGTCTTCTTGATCTTTTTA+AGG - chr1.1:81320776-81320795 MS.gene75176:intron 25.0%
!! CAAACAAGATTGTTTTCATA+GGG - chr1.1:81321877-81321896 MS.gene75176:CDS 25.0%
!! CATTTAAATCTTCACTGTTT+TGG - chr1.1:81319447-81319466 MS.gene75176:intron 25.0%
!! CATTTTTAATGAAGTCAAGT+TGG - chr1.1:81317983-81318002 MS.gene75176:intron 25.0%
!! TTAGTTTGGGTTATAAAACA+TGG - chr1.1:81318683-81318702 MS.gene75176:intron 25.0%
!!! AGTTCTAAAAGTTATATGGT+AGG + chr1.1:81320511-81320530 None:intergenic 25.0%
!!! ATGAGAATGATTTTAGCATA+TGG + chr1.1:81320486-81320505 None:intergenic 25.0%
!!! CAAGAGTTCTAAAAGTTATA+TGG + chr1.1:81320515-81320534 None:intergenic 25.0%
!!! CATATAACTTTTAGAACTCT+TGG - chr1.1:81320513-81320532 MS.gene75176:intron 25.0%
!!! TTAAGAATGGCTTTTAGTTT+GGG - chr1.1:81318670-81318689 MS.gene75176:intron 25.0%
!!! TTGAAATGATTGACTTGAAA+TGG + chr1.1:81317448-81317467 None:intergenic 25.0%
!!! TTTAAGAATGGCTTTTAGTT+TGG - chr1.1:81318669-81318688 MS.gene75176:intron 25.0%
AAAAAACATCTCATGTGAAG+TGG - chr1.1:81319271-81319290 MS.gene75176:intron 30.0%
AATAACTCGAGTATATGTAC+AGG + chr1.1:81320447-81320466 None:intergenic 30.0%
AATTGCGGTTATTGAAAATG+AGG - chr1.1:81317544-81317563 MS.gene75176:intron 30.0%
AGAAAAAAGCCATGCTTTAT+TGG + chr1.1:81321789-81321808 None:intergenic 30.0%
AGCAAATAGGTAAAAACTGT+TGG + chr1.1:81321146-81321165 None:intergenic 30.0%
ATTAAATGCGTAGAAGAACT+AGG + chr1.1:81319694-81319713 None:intergenic 30.0%
ATTGAACTGAAATATGTAGC+GGG - chr1.1:81319725-81319744 MS.gene75176:intron 30.0%
ATTTAAATGTTGGGGATTTG+AGG + chr1.1:81319436-81319455 None:intergenic 30.0%
ATTTAAATGTTGGGGCTTTA+AGG + chr1.1:81319507-81319526 None:intergenic 30.0%
CAGTAGTCTCAATAACAATA+TGG + chr1.1:81317816-81317835 None:intergenic 30.0%
CAGTGAAGATTTAAATGTTG+GGG + chr1.1:81319444-81319463 None:intergenic 30.0%
CATATTTAGTCATAACCTCA+TGG - chr1.1:81320681-81320700 MS.gene75176:intron 30.0%
CCCCAACATTTAAATCTTAA+GGG - chr1.1:81319512-81319531 MS.gene75176:intron 30.0%
CCCTTAAGATTTAAATGTTG+GGG + chr1.1:81319515-81319534 None:intergenic 30.0%
CTAAATATGACAACAAAGCA+AGG + chr1.1:81320670-81320689 None:intergenic 30.0%
CTTATTCATTTGGATACTTG+GGG - chr1.1:81321420-81321439 MS.gene75176:intron 30.0%
GAAATATCTAAATACCCATG+AGG + chr1.1:81320699-81320718 None:intergenic 30.0%
GAAATTGGAGATGAGTTTAA+CGG + chr1.1:81317232-81317251 None:intergenic 30.0%
GAATGAAAGATTTGTCTTTC+AGG - chr1.1:81321617-81321636 MS.gene75176:intron 30.0%
GATTTAAATGTTGGGCTTTA+TGG + chr1.1:81318935-81318954 None:intergenic 30.0%
GGAAGGAAACAAGAAAAAAA+AGG + chr1.1:81320335-81320354 None:intergenic 30.0%
TCAACACACAAGACAAATTT+AGG + chr1.1:81320941-81320960 None:intergenic 30.0%
TGTGCAAGATATAGATTCTA+TGG - chr1.1:81319152-81319171 MS.gene75176:intron 30.0%
TTATTCATTTGGATACTTGG+GGG - chr1.1:81321421-81321440 MS.gene75176:intron 30.0%
TTCAAAATTCGCTATATGGA+AGG + chr1.1:81318279-81318298 None:intergenic 30.0%
TTTGGTGAGATTGATATTGA+TGG - chr1.1:81317655-81317674 MS.gene75176:intron 30.0%
! AAAACAATCTTGTTTGTCCT+TGG + chr1.1:81321873-81321892 None:intergenic 30.0%
! AATATGGATTGTCGAGAAAA+TGG - chr1.1:81318189-81318208 MS.gene75176:CDS 30.0%
! ATATGGATTGTCGAGAAAAT+GGG - chr1.1:81318190-81318209 MS.gene75176:CDS 30.0%
! CATATTGTTATTGAGACTAC+TGG - chr1.1:81317814-81317833 MS.gene75176:intron 30.0%
! GGAAAATGACAGTATTGTTT+TGG - chr1.1:81318877-81318896 MS.gene75176:intron 30.0%
! GTCTTATTCATTTGGATACT+TGG - chr1.1:81321418-81321437 MS.gene75176:intron 30.0%
! TATTGATGGTTCTTTAGTTG+CGG - chr1.1:81317669-81317688 MS.gene75176:intron 30.0%
! TTTTTCTATAGGCTAACATG+TGG - chr1.1:81321523-81321542 MS.gene75176:CDS 30.0%
!! GTAGTTTTGCTATGAAGTAA+GGG - chr1.1:81321243-81321262 MS.gene75176:CDS 30.0%
!! GTTTGTTATGGTTGTTACTA+CGG + chr1.1:81317264-81317283 None:intergenic 30.0%
!! TGTAGTTTTGCTATGAAGTA+AGG - chr1.1:81321242-81321261 MS.gene75176:CDS 30.0%
!! TTTAATGAAGTCAAGTTGGA+TGG - chr1.1:81317987-81318006 MS.gene75176:intron 30.0%
!!! AGTTCTTTTGATTTTGGTGT+TGG + chr1.1:81317197-81317216 None:intergenic 30.0%
AAACGAGAAAGGATTGCATT+GGG + chr1.1:81321170-81321189 None:intergenic 35.0%
AAAGGTCTTCTATCTGTTCA+AGG - chr1.1:81321591-81321610 MS.gene75176:intron 35.0%
AAATTTAGGTACCATGCTTG+TGG + chr1.1:81320927-81320946 None:intergenic 35.0%
AACGTAGTGACGACATTTAT+AGG - chr1.1:81321565-81321584 MS.gene75176:intron 35.0%
AATGCTGAGGAATTGGAAAA+GGG - chr1.1:81321909-81321928 MS.gene75176:CDS 35.0%
AATGGTATCCTCAGCATAAA+AGG + chr1.1:81317967-81317986 None:intergenic 35.0%
AATTTAAAGAGGACGGAGTA+TGG - chr1.1:81320255-81320274 MS.gene75176:intron 35.0%
AGTTTATGGCTATTACTTGC+AGG + chr1.1:81319368-81319387 None:intergenic 35.0%
ATACTCCGTCCTCTTTAAAT+TGG + chr1.1:81320256-81320275 None:intergenic 35.0%
ATAGATTCTATGGAACTGTC+TGG - chr1.1:81319162-81319181 MS.gene75176:intron 35.0%
ATGGTCAAATTTGCCTTTCT+TGG + chr1.1:81317797-81317816 None:intergenic 35.0%
ATTCCAGAAAATAAACAGCC+TGG - chr1.1:81320230-81320249 MS.gene75176:intron 35.0%
CAACATAATATCTTCAGCAC+CGG + chr1.1:81317704-81317723 None:intergenic 35.0%
CAATCCTTTCTCGTTTCATA+AGG - chr1.1:81321174-81321193 MS.gene75176:intron 35.0%
CTACGGAAGATTGTAGAAAT+TGG + chr1.1:81317247-81317266 None:intergenic 35.0%
GAATTAGTCACTTCCAAGAA+AGG - chr1.1:81317781-81317800 MS.gene75176:intron 35.0%
GAATTCTCAAGAAACACTTG+TGG - chr1.1:81319813-81319832 MS.gene75176:intron 35.0%
GACATGCACATCATATATTC+AGG + chr1.1:81320761-81320780 None:intergenic 35.0%
GACGACATTTATAGGATGAA+AGG - chr1.1:81321573-81321592 MS.gene75176:intron 35.0%
GACTACACTATATTGCAGTA+TGG - chr1.1:81319042-81319061 MS.gene75176:intron 35.0%
GCATAAAAGGTCTGGATTAT+CGG + chr1.1:81317954-81317973 None:intergenic 35.0%
GCCCCAACATTTAAATCTTA+AGG - chr1.1:81319511-81319530 MS.gene75176:intron 35.0%
GGAGTTCATGACATATTTCA+AGG - chr1.1:81321816-81321835 MS.gene75176:CDS 35.0%
GTGAACTTGGATTATGTTCT+TGG - chr1.1:81320282-81320301 MS.gene75176:intron 35.0%
TAGCGAGAAGTTAATCCAAA+CGG + chr1.1:81318356-81318375 None:intergenic 35.0%
TCTGAATCATATTCTCACAG+CGG - chr1.1:81317508-81317527 MS.gene75176:CDS 35.0%
TGACAACACTGAAACACTTA+TGG - chr1.1:81318560-81318579 MS.gene75176:intron 35.0%
TGACATATTTCAAGGTTCAC+CGG - chr1.1:81321824-81321843 MS.gene75176:CDS 35.0%
TTAACTTCTCGCTATCACTT+CGG - chr1.1:81318362-81318381 MS.gene75176:intron 35.0%
TTCTTTAGTTGCGGCAAAAA+CGG - chr1.1:81317678-81317697 MS.gene75176:intron 35.0%
TTGCGAATAGCAGAAAACAA+CGG + chr1.1:81318539-81318558 None:intergenic 35.0%
TTGGATTATGTTCTTGGCAT+TGG - chr1.1:81320288-81320307 MS.gene75176:intron 35.0%
TTGTCCTTATGAAACGAGAA+AGG + chr1.1:81321181-81321200 None:intergenic 35.0%
! AAATGATGATGATACCTTGC+CGG + chr1.1:81317410-81317429 None:intergenic 35.0%
! AATACTTTCTTTGTGCCGTT+TGG - chr1.1:81318338-81318357 MS.gene75176:intron 35.0%
! CTATCCCGTTATGGAATTTT+GGG + chr1.1:81318767-81318786 None:intergenic 35.0%
! GAACTTGCTTCAAGCTTATT+TGG - chr1.1:81317127-81317146 MS.gene75176:CDS 35.0%
! TAAATGTTGGGCTTTATGGT+TGG + chr1.1:81318931-81318950 None:intergenic 35.0%
! TATCCCGTTATGGAATTTTG+GGG + chr1.1:81318766-81318785 None:intergenic 35.0%
!! ACTTCGGTGTTGTTAAATAG+CGG - chr1.1:81318378-81318397 MS.gene75176:intron 35.0%
!! GAAAAATGTGAGTGCTACTT+AGG + chr1.1:81320632-81320651 None:intergenic 35.0%
!!! CATGGCTTTTTTCTGTAACA+GGG - chr1.1:81321795-81321814 MS.gene75176:CDS 35.0%
!!! TCTTTTGATTTTGGTGTTGG+TGG + chr1.1:81317194-81317213 None:intergenic 35.0%
AACTGTGACTGACAAGAAGA+GGG - chr1.1:81318854-81318873 MS.gene75176:intron 40.0%
AGCAAGTACTAACCTTCTCA+AGG + chr1.1:81321366-81321385 None:intergenic 40.0%
AGGAAACTTAGACCTTGAGA+AGG - chr1.1:81321351-81321370 MS.gene75176:CDS 40.0%
ATATGTACAGGCTAGCAAGA+TGG + chr1.1:81320435-81320454 None:intergenic 40.0%
ATGCTGAGGAATTGGAAAAG+GGG - chr1.1:81321910-81321929 MS.gene75176:CDS 40.0%
CAAAATGCTCTGCTGCTATA+TGG - chr1.1:81319634-81319653 MS.gene75176:intron 40.0%
CATGTGAATCTTCATGGTGA+TGG + chr1.1:81320903-81320922 None:intergenic 40.0%
CGAATCAGACATCACTTCTT+TGG - chr1.1:81320092-81320111 MS.gene75176:intron 40.0%
CGAGACACATATAACACAAG+CGG - chr1.1:81321707-81321726 MS.gene75176:CDS 40.0%
CTGAAGCAAAAAGTCTTCGT+TGG - chr1.1:81321469-81321488 MS.gene75176:intron 40.0%
GAAACGAGAAAGGATTGCAT+TGG + chr1.1:81321171-81321190 None:intergenic 40.0%
GAACTTGAATGCTGAGGAAT+TGG - chr1.1:81321902-81321921 MS.gene75176:CDS 40.0%
GAATGCTGAGGAATTGGAAA+AGG - chr1.1:81321908-81321927 MS.gene75176:CDS 40.0%
GATTGCATTGGGAAGCAAAT+AGG + chr1.1:81321159-81321178 None:intergenic 40.0%
GCACATCATATATTCAGGCT+TGG + chr1.1:81320756-81320775 None:intergenic 40.0%
GCTGCACCTCATAATTAGAT+AGG + chr1.1:81318984-81319003 None:intergenic 40.0%
GTCACTACGTTCCATCAATA+AGG + chr1.1:81321556-81321575 None:intergenic 40.0%
TAACTGTGACTGACAAGAAG+AGG - chr1.1:81318853-81318872 MS.gene75176:intron 40.0%
TAATACAGGTTTGGCGAATC+CGG - chr1.1:81317926-81317945 MS.gene75176:intron 40.0%
TATCCTCAGCATAAAAGGTC+TGG + chr1.1:81317962-81317981 None:intergenic 40.0%
TATTTCAAGGTTCACCGGAA+AGG - chr1.1:81321829-81321848 MS.gene75176:CDS 40.0%
TCAATTAAGCGACATGAGTC+AGG - chr1.1:81321681-81321700 MS.gene75176:CDS 40.0%
TCAGTTTCGCCAATAAAGCA+TGG - chr1.1:81321777-81321796 MS.gene75176:CDS 40.0%
TGTGGTCATGTGAATCTTCA+TGG + chr1.1:81320909-81320928 None:intergenic 40.0%
! AAATTCCATAACGGGATAGC+AGG - chr1.1:81318768-81318787 MS.gene75176:CDS 40.0%
! AATCCAGACCTTTTATGCTG+AGG - chr1.1:81317956-81317975 MS.gene75176:intron 40.0%
! CACTCACATTTTTCTACCCT+TGG - chr1.1:81320638-81320657 MS.gene75176:intron 40.0%
! GATTATGTTCTTGGCATTGG+AGG - chr1.1:81320291-81320310 MS.gene75176:intron 40.0%
! GCTATCCCGTTATGGAATTT+TGG + chr1.1:81318768-81318787 None:intergenic 40.0%
! TTGTCTTTGCTGTACTGTGA+GGG - chr1.1:81317735-81317754 MS.gene75176:CDS 40.0%
!! CATATAGCAGCAGAGCATTT+TGG + chr1.1:81319636-81319655 None:intergenic 40.0%
!! GATCATGATGATGGTGTTCA+TGG + chr1.1:81320873-81320892 None:intergenic 40.0%
!!! GCATGGCTTTTTTCTGTAAC+AGG - chr1.1:81321794-81321813 MS.gene75176:CDS 40.0%
AAAGAGGACGGAGTATGGAA+AGG - chr1.1:81320260-81320279 MS.gene75176:intron 45.0%
AAGAAGAGTGGTGAAGGGTT+TGG + chr1.1:81317170-81317189 None:intergenic 45.0%
ACAGCCTGGCCAATTTAAAG+AGG - chr1.1:81320244-81320263 MS.gene75176:intron 45.0%
ACATCACTTCTTTGGTCCAG+CGG - chr1.1:81320100-81320119 MS.gene75176:intron 45.0%
ACTATATTGCAGTATGGCCC+CGG - chr1.1:81319048-81319067 MS.gene75176:intron 45.0%
ACTGTGACTGACAAGAAGAG+GGG - chr1.1:81318855-81318874 MS.gene75176:intron 45.0%
AGAAGAGTGGTGAAGGGTTT+GGG + chr1.1:81317169-81317188 None:intergenic 45.0%
AGGGAAGAACTTGAATGCTG+AGG - chr1.1:81321896-81321915 MS.gene75176:CDS 45.0%
ATGCATAGAAAGACCAAGCC+GGG + chr1.1:81319069-81319088 None:intergenic 45.0%
ATGGTCATGGTCATGGCTAT+GGG + chr1.1:81320848-81320867 None:intergenic 45.0%
ATTCGCCAACAAGATCAGTC+TGG + chr1.1:81320077-81320096 None:intergenic 45.0%
CATGATCATAGTCACGATCC+TGG - chr1.1:81321301-81321320 MS.gene75176:CDS 45.0%
CCGACCCCAAAATTCCATAA+CGG - chr1.1:81318759-81318778 MS.gene75176:CDS 45.0%
CCTGGCCAATTTAAAGAGGA+CGG - chr1.1:81320248-81320267 MS.gene75176:intron 45.0%
CGACCCCAAAATTCCATAAC+GGG - chr1.1:81318760-81318779 MS.gene75176:CDS 45.0%
CTATAGGCTAACATGTGGCT+TGG - chr1.1:81321528-81321547 MS.gene75176:CDS 45.0%
CTTCGTTGGCATTTATGTGC+TGG - chr1.1:81321483-81321502 MS.gene75176:intron 45.0%
CTTGACGAGGTTAAGCCAAA+AGG - chr1.1:81318050-81318069 MS.gene75176:intron 45.0%
GATGCATAGAAAGACCAAGC+CGG + chr1.1:81319070-81319089 None:intergenic 45.0%
GATTCACATGACCACAAGCA+TGG - chr1.1:81320913-81320932 MS.gene75176:intron 45.0%
GCGGTTATCAGGTGGAATAA+CGG + chr1.1:81317353-81317372 None:intergenic 45.0%
GCTATAGCGCTATTGCATAG+CGG - chr1.1:81318400-81318419 MS.gene75176:intron 45.0%
GGAGCATGGAAAACGAATTG+CGG - chr1.1:81317529-81317548 MS.gene75176:intron 45.0%
GGAGTATGGAAAGGTGAACT+TGG - chr1.1:81320269-81320288 MS.gene75176:intron 45.0%
GTGGAAAGAAGAGTGGTGAA+GGG + chr1.1:81317175-81317194 None:intergenic 45.0%
GTTATCAGGTGGAATAACGG+TGG + chr1.1:81317350-81317369 None:intergenic 45.0%
TCAATAGCAGCAGAGCAGTT+TGG + chr1.1:81319024-81319043 None:intergenic 45.0%
TTGCACCAGACTGATCTTGT+TGG - chr1.1:81320069-81320088 MS.gene75176:intron 45.0%
TTGGGAGATAGCAGCTATAG+TGG - chr1.1:81318477-81318496 MS.gene75176:intron 45.0%
TTGTTTGTCCTTGGCTCATC+TGG + chr1.1:81321864-81321883 None:intergenic 45.0%
! GATGATGGTGTTCATGGTCA+TGG + chr1.1:81320867-81320886 None:intergenic 45.0%
! GTTGTCTTTGCTGTACTGTG+AGG - chr1.1:81317734-81317753 MS.gene75176:CDS 45.0%
! TGGCATTGGAGGCTTTGATT+TGG - chr1.1:81320302-81320321 MS.gene75176:intron 45.0%
! TGTCTTTGCTGTACTGTGAG+GGG - chr1.1:81317736-81317755 MS.gene75176:CDS 45.0%
! TTGGTTGATGCGAAACATGC+TGG - chr1.1:81318020-81318039 MS.gene75176:intron 45.0%
!! AATCTTCATGGTGATGGTGG+TGG + chr1.1:81320897-81320916 None:intergenic 45.0%
!! AGAGGCGAGTGAGTTTGTTA+TGG + chr1.1:81317276-81317295 None:intergenic 45.0%
!! AGCAGAGCATTTTGGTGTAG+TGG + chr1.1:81319628-81319647 None:intergenic 45.0%
!! CTGAAATATGTAGCGGGCTA+TGG - chr1.1:81319731-81319750 MS.gene75176:intron 45.0%
!! GAGAGCGCTGTTAATGATGA+AGG - chr1.1:81320802-81320821 MS.gene75176:intron 45.0%
!! GTGAATCTTCATGGTGATGG+TGG + chr1.1:81320900-81320919 None:intergenic 45.0%
!! GTGGCTTGGTACCTTATTGA+TGG - chr1.1:81321542-81321561 MS.gene75176:CDS 45.0%
!! GTTGGATGGTGTTGTCACTT+TGG - chr1.1:81318001-81318020 MS.gene75176:intron 45.0%
!! TGGCCAGGCTGTTTATTTTC+TGG + chr1.1:81320236-81320255 None:intergenic 45.0%
!! TTCTTTGGTCCAGCGGATTA+GGG - chr1.1:81320107-81320126 MS.gene75176:intron 45.0%
!! TTGGAGGCTTTGATTTGGAG+AGG - chr1.1:81320307-81320326 MS.gene75176:intron 45.0%
!!! ACCATCATCACCGGTTTTCT+CGG - chr1.1:81317382-81317401 MS.gene75176:intron 45.0%
!!! CCGTTATGGAATTTTGGGGT+CGG + chr1.1:81318762-81318781 None:intergenic 45.0%
!! TATATATATATGTAAAAAAT+AGG + chr1.1:81321049-81321068 None:intergenic 5.0%
AAGGTTCACCGGAAAGGTTG+TGG - chr1.1:81321835-81321854 MS.gene75176:CDS 50.0%
AATAACGGTGGAGACGTCGT+CGG + chr1.1:81317338-81317357 None:intergenic 50.0%
ACAAAGCAAGGCAGTTGCCA+AGG + chr1.1:81320658-81320677 None:intergenic 50.0%
ACCGAGAAAACCGGTGATGA+TGG + chr1.1:81317386-81317405 None:intergenic 50.0%
AGACACTAACCCTAATCCGC+TGG + chr1.1:81320119-81320138 None:intergenic 50.0%
ATTCCTGCCACCATCATCAC+CGG - chr1.1:81317373-81317392 MS.gene75176:intron 50.0%
CAAAGCAAGGCAGTTGCCAA+GGG + chr1.1:81320657-81320676 None:intergenic 50.0%
CATATTCTCACAGCGGAGCA+TGG - chr1.1:81317515-81317534 MS.gene75176:intron 50.0%
CATGGTCATGGTCATGGCTA+TGG + chr1.1:81320849-81320868 None:intergenic 50.0%
CATGGTCATGGTCATGGTCA+TGG + chr1.1:81320855-81320874 None:intergenic 50.0%
CCGTCCTCTTTAAATTGGCC+AGG + chr1.1:81320251-81320270 None:intergenic 50.0%
CGAGGTTAAGCCAAAAGGTG+TGG - chr1.1:81318055-81318074 MS.gene75176:intron 50.0%
CGCCGCGACAACTATTGTTT+CGG - chr1.1:81319581-81319600 MS.gene75176:intron 50.0%
CTGAACTACGTAGTGCGTTG+TGG - chr1.1:81319111-81319130 MS.gene75176:intron 50.0%
CTGTGACTGACAAGAAGAGG+GGG - chr1.1:81318856-81318875 MS.gene75176:intron 50.0%
GAGATGAGGTGGATGATGAG+AGG + chr1.1:81317294-81317313 None:intergenic 50.0%
GGCCGAAACAATAGTTGTCG+CGG + chr1.1:81319586-81319605 None:intergenic 50.0%
GGTGGAAAGAAGAGTGGTGA+AGG + chr1.1:81317176-81317195 None:intergenic 50.0%
GGTGTTCATGGTCATGGTCA+TGG + chr1.1:81320861-81320880 None:intergenic 50.0%
TCACGATCCTGGCGTTTCAT+CGG - chr1.1:81321312-81321331 MS.gene75176:CDS 50.0%
TGCATAGAAAGACCAAGCCG+GGG + chr1.1:81319068-81319087 None:intergenic 50.0%
TTAGTTGCGGCAAAAACGGC+CGG - chr1.1:81317682-81317701 MS.gene75176:intron 50.0%
! CTTCTTTGGTCCAGCGGATT+AGG - chr1.1:81320106-81320125 MS.gene75176:intron 50.0%
! GCCAAAAGGTGTGGTCAATG+AGG - chr1.1:81318064-81318083 MS.gene75176:intron 50.0%
! GCCTCATTGACCACACCTTT+TGG + chr1.1:81318068-81318087 None:intergenic 50.0%
! GGGTTTGGGTTTGCGATAAG+CGG + chr1.1:81317155-81317174 None:intergenic 50.0%
! GGTGGTGGTGATCATGATGA+TGG + chr1.1:81320882-81320901 None:intergenic 50.0%
! TCCATAACGGGATAGCAGGA+TGG - chr1.1:81318772-81318791 MS.gene75176:CDS 50.0%
! TCGGTGAGCATAGTTTGCGA+AGG - chr1.1:81321331-81321350 MS.gene75176:CDS 50.0%
!! AGCAGAGCAGTTTGGTGATG+CGG + chr1.1:81319016-81319035 None:intergenic 50.0%
!! AGTTTGGTGATGCGGTGAGA+TGG + chr1.1:81319008-81319027 None:intergenic 50.0%
!! GAGAAAACCGGTGATGATGG+TGG + chr1.1:81317383-81317402 None:intergenic 50.0%
!! GGTGTTGGTGGAAAGAAGAG+TGG + chr1.1:81317182-81317201 None:intergenic 50.0%
!! TGATGATGGTGGCAGGAATG+CGG + chr1.1:81317372-81317391 None:intergenic 50.0%
!! TGCTGGTTTGCATCTTGACG+AGG - chr1.1:81318037-81318056 MS.gene75176:intron 50.0%
!! TTTTGGTGTAGTGGCCGCAA+CGG + chr1.1:81319619-81319638 None:intergenic 50.0%
!!! ATCACCGGTTTTCTCGGTTC+CGG - chr1.1:81317388-81317407 MS.gene75176:intron 50.0%
AAGCGGTGTCTGTGCTTCAG+AGG - chr1.1:81321724-81321743 MS.gene75176:CDS 55.0%
AAGGTCTGGATTATCGGCGC+CGG + chr1.1:81317948-81317967 None:intergenic 55.0%
ATGCTCACCGATGAAACGCC+AGG + chr1.1:81321322-81321341 None:intergenic 55.0%
CAATAGTTGTCGCGGCGAGA+TGG + chr1.1:81319578-81319597 None:intergenic 55.0%
CTTGCCGGAACCGAGAAAAC+CGG + chr1.1:81317395-81317414 None:intergenic 55.0%
GCAGGAATGCGGTTATCAGG+TGG + chr1.1:81317361-81317380 None:intergenic 55.0%
GCCATCCTGCTATCCCGTTA+TGG + chr1.1:81318776-81318795 None:intergenic 55.0%
GGCCACTATAGCTTCCGTTG+CGG - chr1.1:81319602-81319621 MS.gene75176:intron 55.0%
GTGGCAGGAATGCGGTTATC+AGG + chr1.1:81317364-81317383 None:intergenic 55.0%
TCTGGCTGCCACAACCTTTC+CGG + chr1.1:81321846-81321865 None:intergenic 55.0%
!! AAACCGGTGATGATGGTGGC+AGG + chr1.1:81317379-81317398 None:intergenic 55.0%
ATTGCAGTATGGCCCCGGCT+TGG - chr1.1:81319053-81319072 MS.gene75176:intron 60.0%
GAGTCGTCGGTGGTTTGAGG+CGG + chr1.1:81317316-81317335 None:intergenic 60.0%
GGCCGCAACGGAAGCTATAG+TGG + chr1.1:81319607-81319626 None:intergenic 60.0%
TCGGAGTCGTCGGTGGTTTG+AGG + chr1.1:81317319-81317338 None:intergenic 60.0%
TGTGGCAGCCAGATGAGCCA+AGG - chr1.1:81321853-81321872 MS.gene75176:CDS 60.0%
! CGGTTTTCTCGGTTCCGGCA+AGG - chr1.1:81317393-81317412 MS.gene75176:intron 60.0%
! GGTGGTTTGAGGCGGAGATG+AGG + chr1.1:81317308-81317327 None:intergenic 60.0%
! GGTTTGAGGCGGAGATGAGG+TGG + chr1.1:81317305-81317324 None:intergenic 60.0%
GGAGACGTCGTCGGAGTCGT+CGG + chr1.1:81317329-81317348 None:intergenic 65.0%
GACGTCGTCGGAGTCGTCGG+TGG + chr1.1:81317326-81317345 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 81317109 81321953 81317109 ID=MS.gene75176
chr1.1 mRNA 81317109 81321953 81317109 ID=MS.gene75176.t1;Parent=MS.gene75176
chr1.1 exon 81321648 81321953 81321648 ID=MS.gene75176.t1.exon1;Parent=MS.gene75176.t1
chr1.1 CDS 81321648 81321953 81321648 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81321497 81321562 81321497 ID=MS.gene75176.t1.exon2;Parent=MS.gene75176.t1
chr1.1 CDS 81321497 81321562 81321497 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81321227 81321407 81321227 ID=MS.gene75176.t1.exon3;Parent=MS.gene75176.t1
chr1.1 CDS 81321227 81321407 81321227 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81320932 81321128 81320932 ID=MS.gene75176.t1.exon4;Parent=MS.gene75176.t1
chr1.1 CDS 81320932 81321128 81320932 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81318934 81318984 81318934 ID=MS.gene75176.t1.exon5;Parent=MS.gene75176.t1
chr1.1 CDS 81318934 81318984 81318934 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81318734 81318825 81318734 ID=MS.gene75176.t1.exon6;Parent=MS.gene75176.t1
chr1.1 CDS 81318734 81318825 81318734 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81318128 81318264 81318128 ID=MS.gene75176.t1.exon7;Parent=MS.gene75176.t1
chr1.1 CDS 81318128 81318264 81318128 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81317690 81317772 81317690 ID=MS.gene75176.t1.exon8;Parent=MS.gene75176.t1
chr1.1 CDS 81317690 81317772 81317690 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81317424 81317528 81317424 ID=MS.gene75176.t1.exon9;Parent=MS.gene75176.t1
chr1.1 CDS 81317424 81317528 81317424 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1 exon 81317109 81317246 81317109 ID=MS.gene75176.t1.exon10;Parent=MS.gene75176.t1
chr1.1 CDS 81317109 81317246 81317109 ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
Gene Sequence

>MS.gene75176

ATGGCGTTTTGTTTCACTGAACTTGCTTCAAGCTTATTTGGCGCCGCTTATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGGTATCATCATCATTTTTCTCTTTCTCTTATCCATTTCAAGTCAATCATTTCAAAGCTTAATTGATCTTGACTTTGAATTCAACAGACAACACTTCTGAATCATATTCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGGTATGTTGAATTTGAATATGTATATGATTATGATATGATTGTGATTATTTCAGTGTTAATGTTTTGTTTTATGCATATGATTATTGTAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGGCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACTTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTATGTAATTAAGCAACTTCAAAATTCTTCATTGTAAAATTGAACTGCTTATTAGGGTTTTAGTATCTAATATGATTTGACTGTTTGTATTAATACAGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACCATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGGTATTCATGACTAATTTATACTTATTACAGGGTGGTTTTTAGTTTTTCATTGATGAAAAATATGGATTGTCGAGAAAATGGGACATTGATTTAGATTTAGTAAATCGCTAACTAAATAATGTACAGTATGGTTATGGTTATATATCCTTCCATATAGCGAATTTTGAATTATTCTAAAAATTCTATATCAAGTTATGGAATGAAATAAATACTTTCTTTGTGCCGTTTGGATTAACTTCTCGCTATCACTTCGGTGTTGTTAAATAGCGGCTATAGCGCTATTGCATAGCGGAATTTGAGCAGATCGTTATTGTTCTGCGATATGCTATCTAGTACAATCAAAATGTTGGGAGATAGCAGCTATAGTGGCGCTATAGCACTGTTGTGTAGTAGAATTTTAACAAACCGTTGTTTTCTGCTATTCGCAATTGACAACACTGAAACACTTATGGAAAAAGAAATATTAAAAGAATCTTACAAGAAATATGACTTTTTTAAAGACATCTTTTCAAATAAGATATTAACTAACTTATTTTTATTTAAGAATGGCTTTTAGTTTGGGTTATAAAACATGGATTATTAAGAAAATAGTGTATCATTCTTAGGCAGCAGAGCATAGTGATAGTAGCCGACCCCAAAATTCCATAACGGGATAGCAGGATGGCCGTTATTTGAAACTTTCATACATTCAATATTTCTACATGCATAAAAACTCACACAATTAACTGTGACTGACAAGAAGAGGGGGAAAATGACAGTATTGTTTTGGAATTTACAATGGAAAAGTTTTAAAATAGCCAACCATAAAGCCCAACATTTAAATCTTAAGTTTTTTTTTTTTTTGGAATTTCCTATCTAATTATGAGGTGCAGCACCATCTCACCGCATCACCAAACTGCTCTGCTGCTATTGACTACACTATATTGCAGTATGGCCCCGGCTTGGTCTTTCTATGCATCTAATTCAAAATTATTCTTGAACTGAACTACGTAGTGCGTTGTGGAATGAAATGAATATTCTTTGTGCAAGATATAGATTCTATGGAACTGTCTGGTTAAAATTCTCAAGAAATGCTTATGGAAAAAGAAATGTTAAAAGAATCTTACAATAAAAATGATTTTTTTATTTTTTTTAAAAAAAAAAAAACATCTCATGTGAAGTGGAATCAGTTTCTGCATCTGAAAAATATCTTATTTTACTTCTCCATGAACATCTATAAACTTTTAAGGATTTTCCTGCAAGTAATAGCCATAAACTTATTTTAACTGAGAATCTTCTCTAAGCTAGTCGTTAAATACGCAACCTCAAATCCCCAACATTTAAATCTTCACTGTTTTGGTACTTTTCAATTGTAAATTTTTTAAAATACACAACCTTAAAGCCCCAACATTTAAATCTTAAGGGATTTTTTTTGGAATTTTCAATTTCATTATGAGGTGCAGCACCATCTCGCCGCGACAACTATTGTTTCGGCCACTATAGCTTCCGTTGCGGCCACTACACCAAAATGCTCTGCTGCTATATGGTGCTATTGAATACTCTATACTGCAGTGTAGTTGACCTAGTTCTTCTACGCATTTAATTCAAAGTTATTATTGAACTGAAATATGTAGCGGGCTATGGAATGAAATGAATACTTTGTTCTTTGTGCAAGATATATATTTTATGAAACTGTATGGATAGAATTCTCAAGAAACACTTGTGGAAAAAGAAATGTTAAATGAATCTTACAGTAATTATGAGTTTTTTAAAAACAGCTTCTCATATTAGTTGAAATCGGTTTCTGCATCCAAAAAATATCTTATTTTACTTCTCCATTAACATCTATAAGCTTTTAAGGATTTTCATGCAAGTAATAGCCATAAATTTATTTTAACTGGGAATCTTCTCTAAGTTAGACGTTAATACAAAGTGATTCTTATAGTACTCTTGTCTATCTTGCACCAGACTGATCTTGTTGGCGAATCAGACATCACTTCTTTGGTCCAGCGGATTAGGGTTAGTGTCTTTCTCTATCTACTGTATCTAAGCGCTTAGTTATTTTTCTTAATTTTAATTCATTATTTTGAAAACATCTGACTGATTTTATTGTGTTATATATTCCAGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGTACCTTTTTTTTCTTGTTTCCTTCCTTTTCAATTGTTTAAGAAAAAGGAAATTTTTAATGTAAGTTTACTTCTTCTCGGCACGAGTTTAGTTTTAATCATGTCCATCTTGCTAGCCTGTACATATACTCGAGTTATTTTCATTGTTTAGTTGACCATATGCTAAAATCATTCTCATTTCCTACCATATAACTTTTAGAACTCTTGGTGTCTTTCTCTTCCTAATGTATCTAATTGTTGAGTTATTTTTTAAAATTTTATAACTCATTCTTCTATCTAAGTTTTAGTTTTTATTTAATGTCCTAAGTAGCACTCACATTTTTCTACCCTTGGCAACTGCCTTGCTTTGTTGTCATATTTAGTCATAACCTCATGGGTATTTAGATATTTCTTCGGTTAATATCTTGTTATTATGCTTTTACTGTCCAAGCCTGAATATATGATGTGCATGTCTTCTTGATCTTTTTAAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGGTACCTAAATTTGTCTTGTGTGTTGACTGTATTTGTGACATGTTATTCTTGTTTGTAACACTGTTCAGATTGCAATCCTATTTTTTACAAGATTTGTCAATTAAAGTTAATCCTATTTTTTACATATATATATATATATATATATATATATATATATATATATATATATATATCATGGCTTCATCTAATTTTATTATTTGAATGGTGGCCAACAGTTTTTACCTATTTGCTTCCCAATGCAATCCTTTCTCGTTTCATAAGGACAAATTATAAGGACATAGCTTATAGAATAGTATTAACTTTACTGTGTAGTTTTGCTATGAAGTAAGGGCAACTTTTTTGTTTTTATATGCAGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCGGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGTTAGTACTTGCTATTTGTCTGCTTAAAACTAAGCTCATTAATTTGTCTTATTCATTTGGATACTTGGGGGAATGCCTTTATTTTTTATGTTAATGCTGAAGCAAAAAGTCTTCGTTGGCATTTATGTGCTGGAAGCGTAACTAACATACTTTTTCTATAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGTGATTTTAAAATTACTTCTATCTTATTTATTGTTGTTGTTTTCAATTAAGCGACATGAGTCAGGCATCGAGACACATATAACACAAGCGGTGTCTGTGCTTCAGAGGACTTACTTTCGCTGTTATCATATACTATGTTCAGTTTCGCCAATAAAGCATGGCTTTTTTCTGTAACAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAGATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>MS.gene75176.t1

MAFCFTELASSLFGAAYRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTAGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGESDITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL