AlfalfaGEDB | MS.gene75176

M. sativa cultivar XinJiangDaYe / MS.gene75176

KEGG: -
GO: -
PFAM: PF02492.22 PF07683.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75176.t1	XP_013470461.1	98	451	7	1	1	451	1	449	4.50E-198	700.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75176.t1	Q9BRT8	34.9	370	193	5	88	446	41	373	1.0e-57	225.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75176.t1	A0A072VR75	98.0	451	7	1	1	451	1	449	3.3e-198	700.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene75176	0.856293	3.55E-62	-1.69E-46
MS.gene049351	MS.gene75176	0.808427	3.11E-50	-1.69E-46
MS.gene049356	MS.gene75176	0.814752	1.31E-51	-1.69E-46
MS.gene049427	MS.gene75176	0.8156	8.51E-52	-1.69E-46
MS.gene049488	MS.gene75176	0.804574	2.02E-49	-1.69E-46
MS.gene049609	MS.gene75176	0.812104	5.01E-51	-1.69E-46
MS.gene049805	MS.gene75176	0.807214	5.64E-50	-1.69E-46
MS.gene050301	MS.gene75176	0.803979	2.69E-49	-1.69E-46
MS.gene050507	MS.gene75176	0.841062	5.97E-58	-1.69E-46
MS.gene050538	MS.gene75176	0.819271	1.27E-52	-1.69E-46

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene75176	MS.gene90838	PPI
MS.gene75176	MS.gene78682	PPI
MS.gene75176	MS.gene029104	PPI
MS.gene75176	MS.gene054657	PPI
MS.gene75176	MS.gene55397	PPI
MS.gene75176	MS.gene066450	PPI
MS.gene75176	MS.gene55396	PPI
MS.gene75176	MS.gene53182	PPI

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75176.t1	MTR_1g115505	98.891	451	3	1	1	451	1	449	0.0	910
MS.gene75176.t1	MTR_8g071110	52.414	435	174	5	21	451	2	407	3.24e-148	428
MS.gene75176.t1	MTR_5g044050	36.772	378	193	7	83	449	24	366	1.90e-72	233

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75176.t1	AT1G80480	78.005	391	77	2	61	451	63	444	0.0	574
MS.gene75176.t1	AT1G15730	71.531	418	110	3	36	451	38	448	0.0	573
MS.gene75176.t1	AT1G26520	37.398	369	185	6	89	449	42	372	1.38e-75	241

Showing 1 to 3 of 3 entries

Previous1Next

Find 121 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATCTTGTTTGTCCT+TGG	0.389225	1.1:+81317170	None:intergenic
AAACCGGTGATGATGGTGGC+AGG	0.542945	1.1:+81321664	None:intergenic
AAAGAGGACGGAGTATGGAA+AGG	0.586024	1.1:-81318780	MS.gene75176:CDS
AAAGGTCTTCTATCTGTTCA+AGG	0.474112	1.1:-81317449	MS.gene75176:CDS
AAATGATGATGATACCTTGC+CGG	0.444794	1.1:+81321633	None:intergenic
AAATTTAGGTACCATGCTTG+TGG	0.601243	1.1:+81318116	None:intergenic
AACGTAGTGACGACATTTAT+AGG	0.447587	1.1:-81317475	MS.gene75176:CDS
AAGAAGAGTGGTGAAGGGTT+TGG	0.330035	1.1:+81321873	None:intergenic
AAGGTCTGGATTATCGGCGC+CGG	0.617720	1.1:+81321095	None:intergenic
AAGGTTCACCGGAAAGGTTG+TGG	0.556980	1.1:-81317205	MS.gene75176:CDS

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACATCTCATGTGAAG+TGG	-	chr1.1:81319271-81319290	MS.gene75176:intron	30.0%
AATAACTCGAGTATATGTAC+AGG	+	chr1.1:81320447-81320466	None:intergenic	30.0%
AATTGCGGTTATTGAAAATG+AGG	-	chr1.1:81317544-81317563	MS.gene75176:intron	30.0%
AGAAAAAAGCCATGCTTTAT+TGG	+	chr1.1:81321789-81321808	None:intergenic	30.0%
AGCAAATAGGTAAAAACTGT+TGG	+	chr1.1:81321146-81321165	None:intergenic	30.0%
ATTAAATGCGTAGAAGAACT+AGG	+	chr1.1:81319694-81319713	None:intergenic	30.0%
ATTGAACTGAAATATGTAGC+GGG	-	chr1.1:81319725-81319744	MS.gene75176:intron	30.0%
ATTTAAATGTTGGGGATTTG+AGG	+	chr1.1:81319436-81319455	None:intergenic	30.0%
ATTTAAATGTTGGGGCTTTA+AGG	+	chr1.1:81319507-81319526	None:intergenic	30.0%
CAGTAGTCTCAATAACAATA+TGG	+	chr1.1:81317816-81317835	None:intergenic	30.0%

Showing 1 to 10 of 297 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	81317109	81321953	81317109	ID=MS.gene75176
chr1.1	mRNA	81317109	81321953	81317109	ID=MS.gene75176.t1;Parent=MS.gene75176
chr1.1	exon	81321648	81321953	81321648	ID=MS.gene75176.t1.exon1;Parent=MS.gene75176.t1
chr1.1	CDS	81321648	81321953	81321648	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81321497	81321562	81321497	ID=MS.gene75176.t1.exon2;Parent=MS.gene75176.t1
chr1.1	CDS	81321497	81321562	81321497	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81321227	81321407	81321227	ID=MS.gene75176.t1.exon3;Parent=MS.gene75176.t1
chr1.1	CDS	81321227	81321407	81321227	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81320932	81321128	81320932	ID=MS.gene75176.t1.exon4;Parent=MS.gene75176.t1
chr1.1	CDS	81320932	81321128	81320932	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81318934	81318984	81318934	ID=MS.gene75176.t1.exon5;Parent=MS.gene75176.t1
chr1.1	CDS	81318934	81318984	81318934	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81318734	81318825	81318734	ID=MS.gene75176.t1.exon6;Parent=MS.gene75176.t1
chr1.1	CDS	81318734	81318825	81318734	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81318128	81318264	81318128	ID=MS.gene75176.t1.exon7;Parent=MS.gene75176.t1
chr1.1	CDS	81318128	81318264	81318128	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81317690	81317772	81317690	ID=MS.gene75176.t1.exon8;Parent=MS.gene75176.t1
chr1.1	CDS	81317690	81317772	81317690	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81317424	81317528	81317424	ID=MS.gene75176.t1.exon9;Parent=MS.gene75176.t1
chr1.1	CDS	81317424	81317528	81317424	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1
chr1.1	exon	81317109	81317246	81317109	ID=MS.gene75176.t1.exon10;Parent=MS.gene75176.t1
chr1.1	CDS	81317109	81317246	81317109	ID=cds.MS.gene75176.t1;Parent=MS.gene75176.t1

Gene Sequence

>MS.gene75176

ATGGCGTTTTGTTTCACTGAACTTGCTTCAAGCTTATTTGGCGCCGCTTATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGGTATCATCATCATTTTTCTCTTTCTCTTATCCATTTCAAGTCAATCATTTCAAAGCTTAATTGATCTTGACTTTGAATTCAACAGACAACACTTCTGAATCATATTCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGGTATGTTGAATTTGAATATGTATATGATTATGATATGATTGTGATTATTTCAGTGTTAATGTTTTGTTTTATGCATATGATTATTGTAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGGCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACTTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTATGTAATTAAGCAACTTCAAAATTCTTCATTGTAAAATTGAACTGCTTATTAGGGTTTTAGTATCTAATATGATTTGACTGTTTGTATTAATACAGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACCATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGGTATTCATGACTAATTTATACTTATTACAGGGTGGTTTTTAGTTTTTCATTGATGAAAAATATGGATTGTCGAGAAAATGGGACATTGATTTAGATTTAGTAAATCGCTAACTAAATAATGTACAGTATGGTTATGGTTATATATCCTTCCATATAGCGAATTTTGAATTATTCTAAAAATTCTATATCAAGTTATGGAATGAAATAAATACTTTCTTTGTGCCGTTTGGATTAACTTCTCGCTATCACTTCGGTGTTGTTAAATAGCGGCTATAGCGCTATTGCATAGCGGAATTTGAGCAGATCGTTATTGTTCTGCGATATGCTATCTAGTACAATCAAAATGTTGGGAGATAGCAGCTATAGTGGCGCTATAGCACTGTTGTGTAGTAGAATTTTAACAAACCGTTGTTTTCTGCTATTCGCAATTGACAACACTGAAACACTTATGGAAAAAGAAATATTAAAAGAATCTTACAAGAAATATGACTTTTTTAAAGACATCTTTTCAAATAAGATATTAACTAACTTATTTTTATTTAAGAATGGCTTTTAGTTTGGGTTATAAAACATGGATTATTAAGAAAATAGTGTATCATTCTTAGGCAGCAGAGCATAGTGATAGTAGCCGACCCCAAAATTCCATAACGGGATAGCAGGATGGCCGTTATTTGAAACTTTCATACATTCAATATTTCTACATGCATAAAAACTCACACAATTAACTGTGACTGACAAGAAGAGGGGGAAAATGACAGTATTGTTTTGGAATTTACAATGGAAAAGTTTTAAAATAGCCAACCATAAAGCCCAACATTTAAATCTTAAGTTTTTTTTTTTTTTGGAATTTCCTATCTAATTATGAGGTGCAGCACCATCTCACCGCATCACCAAACTGCTCTGCTGCTATTGACTACACTATATTGCAGTATGGCCCCGGCTTGGTCTTTCTATGCATCTAATTCAAAATTATTCTTGAACTGAACTACGTAGTGCGTTGTGGAATGAAATGAATATTCTTTGTGCAAGATATAGATTCTATGGAACTGTCTGGTTAAAATTCTCAAGAAATGCTTATGGAAAAAGAAATGTTAAAAGAATCTTACAATAAAAATGATTTTTTTATTTTTTTTAAAAAAAAAAAAACATCTCATGTGAAGTGGAATCAGTTTCTGCATCTGAAAAATATCTTATTTTACTTCTCCATGAACATCTATAAACTTTTAAGGATTTTCCTGCAAGTAATAGCCATAAACTTATTTTAACTGAGAATCTTCTCTAAGCTAGTCGTTAAATACGCAACCTCAAATCCCCAACATTTAAATCTTCACTGTTTTGGTACTTTTCAATTGTAAATTTTTTAAAATACACAACCTTAAAGCCCCAACATTTAAATCTTAAGGGATTTTTTTTGGAATTTTCAATTTCATTATGAGGTGCAGCACCATCTCGCCGCGACAACTATTGTTTCGGCCACTATAGCTTCCGTTGCGGCCACTACACCAAAATGCTCTGCTGCTATATGGTGCTATTGAATACTCTATACTGCAGTGTAGTTGACCTAGTTCTTCTACGCATTTAATTCAAAGTTATTATTGAACTGAAATATGTAGCGGGCTATGGAATGAAATGAATACTTTGTTCTTTGTGCAAGATATATATTTTATGAAACTGTATGGATAGAATTCTCAAGAAACACTTGTGGAAAAAGAAATGTTAAATGAATCTTACAGTAATTATGAGTTTTTTAAAAACAGCTTCTCATATTAGTTGAAATCGGTTTCTGCATCCAAAAAATATCTTATTTTACTTCTCCATTAACATCTATAAGCTTTTAAGGATTTTCATGCAAGTAATAGCCATAAATTTATTTTAACTGGGAATCTTCTCTAAGTTAGACGTTAATACAAAGTGATTCTTATAGTACTCTTGTCTATCTTGCACCAGACTGATCTTGTTGGCGAATCAGACATCACTTCTTTGGTCCAGCGGATTAGGGTTAGTGTCTTTCTCTATCTACTGTATCTAAGCGCTTAGTTATTTTTCTTAATTTTAATTCATTATTTTGAAAACATCTGACTGATTTTATTGTGTTATATATTCCAGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGTACCTTTTTTTTCTTGTTTCCTTCCTTTTCAATTGTTTAAGAAAAAGGAAATTTTTAATGTAAGTTTACTTCTTCTCGGCACGAGTTTAGTTTTAATCATGTCCATCTTGCTAGCCTGTACATATACTCGAGTTATTTTCATTGTTTAGTTGACCATATGCTAAAATCATTCTCATTTCCTACCATATAACTTTTAGAACTCTTGGTGTCTTTCTCTTCCTAATGTATCTAATTGTTGAGTTATTTTTTAAAATTTTATAACTCATTCTTCTATCTAAGTTTTAGTTTTTATTTAATGTCCTAAGTAGCACTCACATTTTTCTACCCTTGGCAACTGCCTTGCTTTGTTGTCATATTTAGTCATAACCTCATGGGTATTTAGATATTTCTTCGGTTAATATCTTGTTATTATGCTTTTACTGTCCAAGCCTGAATATATGATGTGCATGTCTTCTTGATCTTTTTAAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGGTACCTAAATTTGTCTTGTGTGTTGACTGTATTTGTGACATGTTATTCTTGTTTGTAACACTGTTCAGATTGCAATCCTATTTTTTACAAGATTTGTCAATTAAAGTTAATCCTATTTTTTACATATATATATATATATATATATATATATATATATATATATATATATATATCATGGCTTCATCTAATTTTATTATTTGAATGGTGGCCAACAGTTTTTACCTATTTGCTTCCCAATGCAATCCTTTCTCGTTTCATAAGGACAAATTATAAGGACATAGCTTATAGAATAGTATTAACTTTACTGTGTAGTTTTGCTATGAAGTAAGGGCAACTTTTTTGTTTTTATATGCAGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCGGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGTTAGTACTTGCTATTTGTCTGCTTAAAACTAAGCTCATTAATTTGTCTTATTCATTTGGATACTTGGGGGAATGCCTTTATTTTTTATGTTAATGCTGAAGCAAAAAGTCTTCGTTGGCATTTATGTGCTGGAAGCGTAACTAACATACTTTTTCTATAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGTGATTTTAAAATTACTTCTATCTTATTTATTGTTGTTGTTTTCAATTAAGCGACATGAGTCAGGCATCGAGACACATATAACACAAGCGGTGTCTGTGCTTCAGAGGACTTACTTTCGCTGTTATCATATACTATGTTCAGTTTCGCCAATAAAGCATGGCTTTTTTCTGTAACAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAGATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>MS.gene75176.t1

MAFCFTELASSLFGAAYRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTAGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGESDITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL