Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53182.t1 | XP_003614041.2 | 98.9 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 2.10E-201 | 711.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53182.t1 | Q99MB4 | 39.2 | 362 | 206 | 5 | 2 | 356 | 13 | 367 | 2.6e-67 | 257.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53182.t1 | G7JWS4 | 98.9 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 1.5e-201 | 711.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene53182 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene53182 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene53182 | 0.806324 | 8.69E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene53182 | 0.812676 | 3.76E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene53182 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene052012 | MS.gene53182 | 0.806319 | 8.71E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene53182 | 0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene052426 | MS.gene53182 | 0.824221 | 9.08E-54 | -1.69E-46 |
| MS.gene052954 | MS.gene53182 | 0.824969 | 6.05E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene53182 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene53182 | 0.808453 | 3.07E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene53182 | 0.803952 | 2.73E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene53182 | 0.802747 | 4.84E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene53182 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene53182 | 0.896233 | 4.49E-76 | -1.69E-46 |
| MS.gene054658 | MS.gene53182 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene53182 | 0.814934 | 1.20E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene53182 | 0.814976 | 1.17E-51 | -1.69E-46 |
| MS.gene055230 | MS.gene53182 | 0.819927 | 8.98E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene53182 | 0.806722 | 7.16E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene53182 | 0.842825 | 2.04E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene53182 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene53182 | 0.827997 | 1.15E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene53182 | 0.825126 | 5.55E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene53182 | 0.815003 | 1.16E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene53182 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene53182 | 0.810004 | 1.43E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene53182 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene53182 | 0.813878 | 2.05E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene53182 | 0.808332 | 3.26E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene53182 | 0.84426 | 8.44E-59 | -1.69E-46 |
| MS.gene058595 | MS.gene53182 | 0.810452 | 1.14E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene53182 | 0.804793 | 1.82E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene53182 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene53182 | 0.813545 | 2.42E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene53182 | 0.808249 | 3.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53182 | MS.gene066450 | PPI |
| MS.gene53182 | MS.gene90838 | PPI |
| MS.gene75176 | MS.gene53182 | PPI |
| MS.gene53182 | MS.gene029104 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53182.t1 | MTR_5g044050 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 735 |
| MS.gene53182.t1 | MTR_8g071110 | 38.873 | 355 | 196 | 7 | 22 | 362 | 57 | 404 | 7.62e-71 | 227 |
| MS.gene53182.t1 | MTR_1g115505 | 36.148 | 379 | 192 | 8 | 24 | 366 | 83 | 447 | 6.94e-68 | 221 |
| MS.gene53182.t1 | MTR_5g021440 | 89.583 | 48 | 4 | 1 | 1 | 48 | 1 | 47 | 1.80e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53182.t1 | AT1G26520 | 72.576 | 361 | 93 | 2 | 4 | 361 | 13 | 370 | 0.0 | 539 |
| MS.gene53182.t1 | AT1G15730 | 38.005 | 371 | 187 | 7 | 24 | 362 | 86 | 445 | 2.82e-74 | 237 |
| MS.gene53182.t1 | AT1G80480 | 36.911 | 382 | 199 | 7 | 12 | 362 | 71 | 441 | 1.43e-72 | 233 |
Find 73 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTTGGCATCTATTCTT+TGG | 0.207860 | 5.4:+33402427 | MS.gene53182:CDS |
| TAAGCATGCTGCACATTTAG+AGG | 0.274462 | 5.4:+33403582 | MS.gene53182:intron |
| AATGAGTTTGGTGAGGAAAT+TGG | 0.300166 | 5.4:+33401750 | MS.gene53182:CDS |
| CTACGAGTGTGTTAATGTTA+TGG | 0.302882 | 5.4:-33403404 | None:intergenic |
| TGATGAATTGCATACTTTGC+AGG | 0.313404 | 5.4:+33404061 | MS.gene53182:CDS |
| TATGGCTAGAGGAGATTCTT+TGG | 0.317773 | 5.4:+33403979 | MS.gene53182:CDS |
| ATGAATAAGATAGTATTTAT+AGG | 0.327529 | 5.4:+33405784 | MS.gene53182:CDS |
| AATTCTTAACAAGGTTGATT+TGG | 0.330079 | 5.4:+33403335 | MS.gene53182:CDS |
| TTGGGAGAAGAAATATGATA+TGG | 0.330619 | 5.4:+33403998 | MS.gene53182:CDS |
| AACAGAAGATTGTTGAGAAA+TGG | 0.344084 | 5.4:-33400379 | None:intergenic |
| GCTGTGATATTGAATGAGTT+TGG | 0.371555 | 5.4:+33401738 | MS.gene53182:CDS |
| GCTATCTGAAAATATGCTTC+AGG | 0.372809 | 5.4:-33402946 | None:intergenic |
| TTGCACTGTTAAGCATAGTT+TGG | 0.374329 | 5.4:+33401854 | MS.gene53182:CDS |
| AAACAAATACACAGCCTAAC+AGG | 0.375928 | 5.4:-33405953 | None:intergenic |
| TGTGGCTAATCCAGCACCTT+TGG | 0.381484 | 5.4:+33402413 | MS.gene53182:CDS |
| ACTCTCATCACTGGTTATCT+TGG | 0.383465 | 5.4:+33400408 | MS.gene53182:CDS |
| AATCATGGCAGACTCGTATA+TGG | 0.391984 | 5.4:+33403961 | MS.gene53182:intron |
| ACAGGTTGCAAGAGCTTTCA+AGG | 0.398690 | 5.4:-33405935 | None:intergenic |
| TTTGGCATCTATTCTTTGGT+TGG | 0.414831 | 5.4:+33402431 | MS.gene53182:CDS |
| TTCTCTGCACAAGCTGCTCA+AGG | 0.418476 | 5.4:-33401884 | None:intergenic |
| TAGGCTAGACCATATATTGC+TGG | 0.419326 | 5.4:+33402380 | MS.gene53182:intron |
| AGAATAGATGCCAAAGGTGC+TGG | 0.420889 | 5.4:-33402423 | None:intergenic |
| TTGGTATCTGCAGAAGGCTC+TGG | 0.429405 | 5.4:+33403354 | MS.gene53182:CDS |
| CAGTAGTTTCCAGCAATATA+TGG | 0.431248 | 5.4:-33402389 | None:intergenic |
| ATGGCTAGAGGAGATTCTTT+GGG | 0.440901 | 5.4:+33403980 | MS.gene53182:CDS |
| TCCTGTCTCGGAGATGCATA+TGG | 0.443042 | 5.4:-33403665 | None:intergenic |
| AGTGGAAGAAAGAAGAAAAC+AGG | 0.446364 | 5.4:+33405761 | MS.gene53182:CDS |
| GAAAGCTCTTGCAACCTGTT+AGG | 0.451631 | 5.4:+33405939 | MS.gene53182:CDS |
| ATCACTGGTTATCTTGGTGC+TGG | 0.453584 | 5.4:+33400414 | MS.gene53182:CDS |
| GAAAGAGCATTGATAAATGA+AGG | 0.462576 | 5.4:+33401777 | MS.gene53182:CDS |
| AGCCACGGTGCTCCTTGAGC+TGG | 0.477134 | 5.4:-33402912 | None:intergenic |
| GTGGTGCAGTTGTTGAAGAA+TGG | 0.477782 | 5.4:+33401805 | MS.gene53182:CDS |
| TCTTTGGTTGGATGAACAGT+TGG | 0.479469 | 5.4:+33402443 | MS.gene53182:CDS |
| GTTGGTGTCACTCTCATCAC+TGG | 0.482192 | 5.4:+33400399 | MS.gene53182:CDS |
| TGGTGCAGTTGTTGAAGAAT+GGG | 0.484968 | 5.4:+33401806 | MS.gene53182:CDS |
| TCTTTCTTCCACTTCCGAGC+CGG | 0.485911 | 5.4:-33405751 | None:intergenic |
| AGAACTATATGAGATTGTTC+CGG | 0.486200 | 5.4:+33405732 | MS.gene53182:CDS |
| GAATGGGTTGAACTTGCTAA+TGG | 0.500533 | 5.4:+33401822 | MS.gene53182:CDS |
| AGATTGTTCCGGCTCGGAAG+TGG | 0.502579 | 5.4:+33405743 | MS.gene53182:CDS |
| ATTTCTCAACAATCTTCTGT+TGG | 0.503553 | 5.4:+33400381 | MS.gene53182:CDS |
| ACCATATGCATCTCCGAGAC+AGG | 0.504951 | 5.4:+33403664 | MS.gene53182:CDS |
| AAGATCAACTGTTCCTGTCT+CGG | 0.509787 | 5.4:-33403677 | None:intergenic |
| CATATATTGCTGGAAACTAC+TGG | 0.512907 | 5.4:+33402390 | MS.gene53182:CDS |
| AGGAACAGTTGATCTTGATA+AGG | 0.543424 | 5.4:+33403684 | MS.gene53182:CDS |
| TCTCTGCACAAGCTGCTCAA+GGG | 0.549355 | 5.4:-33401883 | None:intergenic |
| TGAACTCTCAACATGGGAAG+AGG | 0.549391 | 5.4:+33401712 | MS.gene53182:CDS |
| AAATGTTCGCTTCCAGCTCA+AGG | 0.553773 | 5.4:+33402900 | MS.gene53182:CDS |
| TTGATAAATGAAGGGGAAAG+TGG | 0.553774 | 5.4:+33401786 | MS.gene53182:CDS |
| CATATATTGAACTCTCAACA+TGG | 0.555523 | 5.4:+33401705 | MS.gene53182:CDS |
| AGAAGGCTCTGGAGCTCTAG+AGG | 0.581340 | 5.4:+33403365 | MS.gene53182:CDS |
| GTTGATTTGGTATCTGCAGA+AGG | 0.585096 | 5.4:+33403348 | MS.gene53182:CDS |
| AAAGAGCATTGATAAATGAA+GGG | 0.594588 | 5.4:+33401778 | MS.gene53182:CDS |
| GGACATTGTAATTCTTAACA+AGG | 0.607377 | 5.4:+33403326 | MS.gene53182:intron |
| TATATGAGATTGTTCCGGCT+CGG | 0.610109 | 5.4:+33405737 | MS.gene53182:CDS |
| AAGAGCATTGATAAATGAAG+GGG | 0.611247 | 5.4:+33401779 | MS.gene53182:CDS |
| ATGGATGTATACCGTTGCAA+AGG | 0.617207 | 5.4:+33404017 | MS.gene53182:CDS |
| CTGCAGTATCGTAAGCGTGG+CGG | 0.624449 | 5.4:-33403476 | None:intergenic |
| ATATATTGAACTCTCAACAT+GGG | 0.629606 | 5.4:+33401706 | MS.gene53182:CDS |
| CATTCAAGACTCCTTTGCAA+CGG | 0.633864 | 5.4:-33404028 | None:intergenic |
| TGTTGAATCTCAACAGCAAG+AGG | 0.636495 | 5.4:-33400339 | None:intergenic |
| TGAATCTCAACAGCAAGAGG+TGG | 0.637466 | 5.4:-33400336 | None:intergenic |
| GCAGACTCGTATATGGCTAG+AGG | 0.641181 | 5.4:+33403968 | MS.gene53182:intron |
| TCTTGGTGCTGGAAAATCCA+CGG | 0.645225 | 5.4:+33400425 | MS.gene53182:CDS |
| AGCTTGTGCAGAGAAAAGAA+AGG | 0.645456 | 5.4:+33401892 | MS.gene53182:CDS |
| CAGGAAATGAAGATGAGCCA+CGG | 0.651825 | 5.4:-33402927 | None:intergenic |
| GTTTGGTGAGGAAATTGGAG+TGG | 0.654078 | 5.4:+33401755 | MS.gene53182:CDS |
| AGCTCTAGAGGAACTCGAGG+AGG | 0.659807 | 5.4:+33403377 | MS.gene53182:CDS |
| AACCAAAGAATAGATGCCAA+AGG | 0.660580 | 5.4:-33402429 | None:intergenic |
| TTACTGCAGTATCGTAAGCG+TGG | 0.673945 | 5.4:-33403479 | None:intergenic |
| TGGAGCTCTAGAGGAACTCG+AGG | 0.681621 | 5.4:+33403374 | MS.gene53182:CDS |
| ATTGCTGGAAACTACTGGTG+TGG | 0.682013 | 5.4:+33402395 | MS.gene53182:CDS |
| GATATTGAATGAGTTTGGTG+AGG | 0.685395 | 5.4:+33401743 | MS.gene53182:CDS |
| TTCCAGCTCAAGGAGCACCG+TGG | 0.718846 | 5.4:+33402910 | MS.gene53182:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATCTTACA+GGG | + | chr5.4:33401534-33401553 | MS.gene53182:intron | 10.0% |
| !! | ATTTAAATAAATTACTTATC+TGG | + | chr5.4:33402578-33402597 | MS.gene53182:intron | 10.0% |
| !! | TAAAAAAAAAAAAATCTTAC+AGG | + | chr5.4:33401533-33401552 | MS.gene53182:intron | 10.0% |
| !! | TTATAAATTAAAGTAAAATG+TGG | - | chr5.4:33404355-33404374 | None:intergenic | 10.0% |
| !! | TTTAAATAAATTACTTATCT+GGG | + | chr5.4:33402579-33402598 | MS.gene53182:intron | 10.0% |
| !!! | CTTTATTTATATATTTGAAA+AGG | + | chr5.4:33405496-33405515 | MS.gene53182:intron | 10.0% |
| !!! | TATATATGTTGATTTTAATT+AGG | + | chr5.4:33404991-33405010 | MS.gene53182:intron | 10.0% |
| !!! | TTACTTTAATTTATAATGAT+GGG | + | chr5.4:33404359-33404378 | MS.gene53182:intron | 10.0% |
| !!! | TTCATTTTATTTTTGTTATT+GGG | + | chr5.4:33400534-33400553 | MS.gene53182:intron | 10.0% |
| !!! | TTTACTTTAATTTATAATGA+TGG | + | chr5.4:33404358-33404377 | MS.gene53182:intron | 10.0% |
| !!! | TTTCATTTTATTTTTGTTAT+TGG | + | chr5.4:33400533-33400552 | MS.gene53182:intron | 10.0% |
| !! | AAACTCAAATATTATATGAA+AGG | - | chr5.4:33405668-33405687 | None:intergenic | 15.0% |
| !! | AACTCAAATATTATATGAAA+GGG | - | chr5.4:33405667-33405686 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr5.4:33401161-33401180 | MS.gene53182:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr5.4:33401180-33401161 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr5.4:33400941-33400960 | None:intergenic | 15.0% |
| !! | ATGAATAAGATAGTATTTAT+AGG | + | chr5.4:33405784-33405803 | MS.gene53182:CDS | 15.0% |
| !! | TATAATCATGTTAATATACA+TGG | - | chr5.4:33405366-33405385 | None:intergenic | 15.0% |
| !! | TATTTATAAGAGATTCAAAA+GGG | - | chr5.4:33402293-33402312 | None:intergenic | 15.0% |
| !! | TTATATACATAAGCAATAAT+AGG | - | chr5.4:33402041-33402060 | None:intergenic | 15.0% |
| !! | TTTATATCATGTTTAAATCA+TGG | + | chr5.4:33403946-33403965 | MS.gene53182:intron | 15.0% |
| !!! | AAATTAATTTTGATGGAAAA+AGG | - | chr5.4:33400462-33400481 | None:intergenic | 15.0% |
| !!! | AATTAATTCATTTGTTGTTT+GGG | + | chr5.4:33404684-33404703 | MS.gene53182:intron | 15.0% |
| !!! | ATAATTAACCCTTTTTTAAT+TGG | + | chr5.4:33401224-33401243 | MS.gene53182:intron | 15.0% |
| !!! | ATGTTTATTTTTTGATTAAC+AGG | + | chr5.4:33405880-33405899 | MS.gene53182:intron | 15.0% |
| !!! | ATTGTTTGTTATATATTAAC+TGG | + | chr5.4:33402979-33402998 | MS.gene53182:intron | 15.0% |
| !!! | TAGTACAATTAAACATTTTT+AGG | + | chr5.4:33402344-33402363 | MS.gene53182:intron | 15.0% |
| !!! | TTCATATATCTTTTTTTTTG+TGG | - | chr5.4:33403082-33403101 | None:intergenic | 15.0% |
| !!! | TTGTGTAAGTATTTTTTAAT+GGG | + | chr5.4:33400677-33400696 | MS.gene53182:intron | 15.0% |
| !!! | TTTGTGTAAGTATTTTTTAA+TGG | + | chr5.4:33400676-33400695 | MS.gene53182:intron | 15.0% |
| !! | AAAAGTAATTAATAGTGCAT+TGG | - | chr5.4:33404284-33404303 | None:intergenic | 20.0% |
| !! | AAAATAACCTTGTTAACTAT+TGG | - | chr5.4:33404392-33404411 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr5.4:33400811-33400830 | None:intergenic | 20.0% |
| !! | AAACCAAATCCAATTAAAAA+AGG | - | chr5.4:33401236-33401255 | None:intergenic | 20.0% |
| !! | AACCAAATCCAATTAAAAAA+GGG | - | chr5.4:33401235-33401254 | None:intergenic | 20.0% |
| !! | ACTCAAATATTATATGAAAG+GGG | - | chr5.4:33405666-33405685 | None:intergenic | 20.0% |
| !! | ATTTATAAGAGATTCAAAAG+GGG | - | chr5.4:33402292-33402311 | None:intergenic | 20.0% |
| !! | CAAAAAACACTATAATTGTA+AGG | + | chr5.4:33401565-33401584 | MS.gene53182:intron | 20.0% |
| !! | CCAATTAGAAATTATAGAAA+GGG | - | chr5.4:33400486-33400505 | None:intergenic | 20.0% |
| !! | CCTTTCTATAATTTCTAATT+GGG | + | chr5.4:33400484-33400503 | MS.gene53182:intron | 20.0% |
| !! | CTATTTATAAGAGATTCAAA+AGG | - | chr5.4:33402294-33402313 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr5.4:33400812-33400831 | None:intergenic | 20.0% |
| !! | TAGATAAATTAGACATTCAT+GGG | + | chr5.4:33405400-33405419 | MS.gene53182:intron | 20.0% |
| !! | TTAGATAAATTAGACATTCA+TGG | + | chr5.4:33405399-33405418 | MS.gene53182:intron | 20.0% |
| !!! | AAAGGGAAAATTAATTTTGA+TGG | - | chr5.4:33400469-33400488 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr5.4:33400906-33400925 | None:intergenic | 20.0% |
| !!! | ATTTAATCTTGTGCTTTATT+TGG | + | chr5.4:33405424-33405443 | MS.gene53182:intron | 20.0% |
| !!! | CAATTAATTCATTTGTTGTT+TGG | + | chr5.4:33404683-33404702 | MS.gene53182:intron | 20.0% |
| !!! | CTTACAATTATAGTGTTTTT+TGG | - | chr5.4:33401567-33401586 | None:intergenic | 20.0% |
| !!! | GCTTTTATCAACATATAAAA+AGG | - | chr5.4:33402790-33402809 | None:intergenic | 20.0% |
| !!! | TGTCTAATTTATCTAAAACT+TGG | - | chr5.4:33405395-33405414 | None:intergenic | 20.0% |
| !!! | TTAATTAGGTATTGTATAAG+AGG | + | chr5.4:33405005-33405024 | MS.gene53182:intron | 20.0% |
| !!! | TTGATTTTTAAACCATTCAT+CGG | + | chr5.4:33405687-33405706 | MS.gene53182:intron | 20.0% |
| !!! | TTTTCATATAAACTATAAGC+TGG | + | chr5.4:33402086-33402105 | MS.gene53182:intron | 20.0% |
| !!! | TTTTTTTGTTTTTTGAGCAA+TGG | + | chr5.4:33402529-33402548 | MS.gene53182:intron | 20.0% |
| ! | AAGAAATATTGTTACAGACT+AGG | - | chr5.4:33403244-33403263 | None:intergenic | 25.0% |
| ! | AAGTAAGGACTAAATTTACA+AGG | - | chr5.4:33400736-33400755 | None:intergenic | 25.0% |
| ! | AAGTAAGGATTAAACTTACA+AGG | + | chr5.4:33401176-33401195 | MS.gene53182:intron | 25.0% |
| ! | ACATAAGCAATAATAGGATA+AGG | - | chr5.4:33402035-33402054 | None:intergenic | 25.0% |
| ! | ACTCCATATTACAAAATCAT+TGG | - | chr5.4:33401650-33401669 | None:intergenic | 25.0% |
| ! | AGTGTGCATAGTAATAATTA+AGG | - | chr5.4:33404320-33404339 | None:intergenic | 25.0% |
| ! | ATATATTGAACTCTCAACAT+GGG | + | chr5.4:33401706-33401725 | MS.gene53182:CDS | 25.0% |
| ! | CACAACAATTTAATGAGAAA+AGG | - | chr5.4:33403032-33403051 | None:intergenic | 25.0% |
| ! | CATAAGCAATAATAGGATAA+GGG | - | chr5.4:33402034-33402053 | None:intergenic | 25.0% |
| ! | CCCAATTAGAAATTATAGAA+AGG | - | chr5.4:33400487-33400506 | None:intergenic | 25.0% |
| ! | CCCTTTCTATAATTTCTAAT+TGG | + | chr5.4:33400483-33400502 | MS.gene53182:intron | 25.0% |
| ! | CTATTATTTCAACAAGCTAT+AGG | - | chr5.4:33400567-33400586 | None:intergenic | 25.0% |
| ! | CTCAAATATTATATGAAAGG+GGG | - | chr5.4:33405665-33405684 | None:intergenic | 25.0% |
| ! | GTGTGCATAGTAATAATTAA+GGG | - | chr5.4:33404319-33404338 | None:intergenic | 25.0% |
| ! | TAAAGTAAAATGTGGTACTT+TGG | - | chr5.4:33404347-33404366 | None:intergenic | 25.0% |
| ! | TCAGGGCAAAAAAAAAATTA+GGG | - | chr5.4:33400780-33400799 | None:intergenic | 25.0% |
| ! | TCATCCATTAATGATACTTA+CGG | - | chr5.4:33402499-33402518 | None:intergenic | 25.0% |
| ! | TCTTTAATTAGAGATGAATC+TGG | - | chr5.4:33405088-33405107 | None:intergenic | 25.0% |
| ! | TGTGCATAGTAATAATTAAG+GGG | - | chr5.4:33404318-33404337 | None:intergenic | 25.0% |
| ! | TTATAAATAGATGCAGTGTT+CGG | + | chr5.4:33402304-33402323 | MS.gene53182:intron | 25.0% |
| ! | TTTGATGGAAAAAGGTAAAT+GGG | - | chr5.4:33400454-33400473 | None:intergenic | 25.0% |
| !! | AATTCTTAACAAGGTTGATT+TGG | + | chr5.4:33403335-33403354 | MS.gene53182:CDS | 25.0% |
| !! | ATATTTTCAGATAGCATTTG+CGG | + | chr5.4:33402954-33402973 | MS.gene53182:CDS | 25.0% |
| !! | TCTTGTTAATTTTGTGATAG+TGG | + | chr5.4:33402757-33402776 | MS.gene53182:intron | 25.0% |
| !! | TTTAGGTATTTTGTGTTTGT+AGG | + | chr5.4:33402361-33402380 | MS.gene53182:intron | 25.0% |
| !! | TTTTGATGGAAAAAGGTAAA+TGG | - | chr5.4:33400455-33400474 | None:intergenic | 25.0% |
| !!! | AAAGAGCATTGATAAATGAA+GGG | + | chr5.4:33401778-33401797 | MS.gene53182:CDS | 25.0% |
| !!! | AACCCTTTTTTAATTGGATT+TGG | + | chr5.4:33401230-33401249 | MS.gene53182:intron | 25.0% |
| !!! | AATAATTAAGGGGTACTATT+GGG | - | chr5.4:33404308-33404327 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr5.4:33401100-33401119 | MS.gene53182:intron | 25.0% |
| !!! | ATTTATTTCTATAAGCTCTC+TGG | - | chr5.4:33402126-33402145 | None:intergenic | 25.0% |
| !!! | TAATAATTAAGGGGTACTAT+TGG | - | chr5.4:33404309-33404328 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr5.4:33401099-33401118 | MS.gene53182:intron | 25.0% |
| !!! | TCTTTTTAAAACAGTAACAG+TGG | - | chr5.4:33404534-33404553 | None:intergenic | 25.0% |
| !!! | TTTATTTCTATAAGCTCTCT+GGG | - | chr5.4:33402125-33402144 | None:intergenic | 25.0% |
| AAATGCACCAATAGTTAACA+AGG | + | chr5.4:33404382-33404401 | MS.gene53182:intron | 30.0% | |
| AACAAATATATGAGACGAAG+AGG | - | chr5.4:33405282-33405301 | None:intergenic | 30.0% | |
| AACAGAAGATTGTTGAGAAA+TGG | - | chr5.4:33400382-33400401 | None:intergenic | 30.0% | |
| AACAGTATCATTTGTTTGAC+AGG | - | chr5.4:33402648-33402667 | None:intergenic | 30.0% | |
| AACCTTTGTAACTGTTATAC+TGG | + | chr5.4:33401604-33401623 | MS.gene53182:intron | 30.0% | |
| AATATTGTTACAGACTAGGT+AGG | - | chr5.4:33403240-33403259 | None:intergenic | 30.0% | |
| AATTAAGTTTGCATTCGCAT+TGG | + | chr5.4:33404506-33404525 | MS.gene53182:intron | 30.0% | |
| ACAAATATATGAGACGAAGA+GGG | - | chr5.4:33405281-33405300 | None:intergenic | 30.0% | |
| ACAGTATCATTTGTTTGACA+GGG | - | chr5.4:33402647-33402666 | None:intergenic | 30.0% | |
| ACTAAAAAGCTTCATGATAG+TGG | + | chr5.4:33403634-33403653 | MS.gene53182:CDS | 30.0% | |
| AGAACTATATGAGATTGTTC+CGG | + | chr5.4:33405732-33405751 | MS.gene53182:CDS | 30.0% | |
| AGTATGCTAAAAGAGAAACA+AGG | + | chr5.4:33405117-33405136 | MS.gene53182:intron | 30.0% | |
| AGTTATAACAGAGAAGCTAA+AGG | - | chr5.4:33404747-33404766 | None:intergenic | 30.0% | |
| ATATTGTTACAGACTAGGTA+GGG | - | chr5.4:33403239-33403258 | None:intergenic | 30.0% | |
| ATGTTCTTCTGTATCTAAGA+AGG | + | chr5.4:33404132-33404151 | MS.gene53182:intron | 30.0% | |
| ATTGTCCAAGAAATAGTTCT+TGG | + | chr5.4:33402689-33402708 | MS.gene53182:intron | 30.0% | |
| ATTTCTCAACAATCTTCTGT+TGG | + | chr5.4:33400381-33400400 | MS.gene53182:CDS | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr5.4:33401038-33401057 | None:intergenic | 30.0% | |
| CATATATTGAACTCTCAACA+TGG | + | chr5.4:33401705-33401724 | MS.gene53182:CDS | 30.0% | |
| CGCACTAGAAATTTAAACAT+TGG | + | chr5.4:33401946-33401965 | MS.gene53182:intron | 30.0% | |
| CTAAATTATCAGCATAGACA+GGG | - | chr5.4:33403175-33403194 | None:intergenic | 30.0% | |
| CTAGTAACACTTCAAAAATC+TGG | + | chr5.4:33405195-33405214 | MS.gene53182:intron | 30.0% | |
| CTCAGGGCAAAAAAAAAATT+AGG | - | chr5.4:33400781-33400800 | None:intergenic | 30.0% | |
| GCTTAAAAGAGAAACAAAAC+AGG | - | chr5.4:33403567-33403586 | None:intergenic | 30.0% | |
| GGACATTGTAATTCTTAACA+AGG | + | chr5.4:33403326-33403345 | MS.gene53182:intron | 30.0% | |
| GTATGGATGTAATGTCTTAT+AGG | - | chr5.4:33404571-33404590 | None:intergenic | 30.0% | |
| GTTGTAGAATCTACAATCTA+GGG | - | chr5.4:33404664-33404683 | None:intergenic | 30.0% | |
| TAAATTATCAGCATAGACAG+GGG | - | chr5.4:33403174-33403193 | None:intergenic | 30.0% | |
| TAACACTTCAAAAATCTGGT+TGG | + | chr5.4:33405199-33405218 | MS.gene53182:intron | 30.0% | |
| TAGAAAATGCCGAAATTGTT+AGG | + | chr5.4:33401429-33401448 | MS.gene53182:intron | 30.0% | |
| TCAACTCTATTGCTAATTTC+TGG | + | chr5.4:33405032-33405051 | MS.gene53182:intron | 30.0% | |
| TCTAATTGAGATCGAACTTA+TGG | - | chr5.4:33401413-33401432 | None:intergenic | 30.0% | |
| TGGTCAAAACAAAAATCTTG+TGG | + | chr5.4:33405444-33405463 | MS.gene53182:intron | 30.0% | |
| TGTAATATGGAGTTGTGAAT+TGG | + | chr5.4:33401657-33401676 | MS.gene53182:intron | 30.0% | |
| TGTTGTAGAATCTACAATCT+AGG | - | chr5.4:33404665-33404684 | None:intergenic | 30.0% | |
| TTCCAGTATAACAGTTACAA+AGG | - | chr5.4:33401609-33401628 | None:intergenic | 30.0% | |
| TTGGACTCATAATTACACTT+AGG | + | chr5.4:33401965-33401984 | MS.gene53182:intron | 30.0% | |
| TTGGGAGAAGAAATATGATA+TGG | + | chr5.4:33403998-33404017 | MS.gene53182:CDS | 30.0% | |
| ! | AATTTTACATGCATAACCAC+TGG | - | chr5.4:33404175-33404194 | None:intergenic | 30.0% |
| ! | ACATTTTATAGTACCTGTCA+TGG | + | chr5.4:33402714-33402733 | MS.gene53182:intron | 30.0% |
| ! | TATTTCTTGGACAATTTTGC+GGG | - | chr5.4:33402684-33402703 | None:intergenic | 30.0% |
| ! | TTTTTGGATGATAGATGAAG+TGG | - | chr5.4:33401506-33401525 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr5.4:33404474-33404493 | MS.gene53182:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5.4:33404493-33404474 | None:intergenic | 30.0% |
| !! | AAGAGCATTGATAAATGAAG+GGG | + | chr5.4:33401779-33401798 | MS.gene53182:CDS | 30.0% |
| !! | CTATTTCTTGGACAATTTTG+CGG | - | chr5.4:33402685-33402704 | None:intergenic | 30.0% |
| !! | GAAAGAGCATTGATAAATGA+AGG | + | chr5.4:33401777-33401796 | MS.gene53182:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr5.4:33401192-33401211 | MS.gene53182:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr5.4:33401211-33401192 | None:intergenic | 30.0% |
| !! | TAGTAAAAGTGTCATGTCTA+TGG | + | chr5.4:33404411-33404430 | MS.gene53182:intron | 30.0% |
| !! | TGAGTTCGAAGAGTATTTAT+AGG | + | chr5.4:33404810-33404829 | MS.gene53182:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr5.4:33401191-33401210 | MS.gene53182:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr5.4:33401210-33401191 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr5.4:33404238-33404219 | None:intergenic | 30.0% |
| AACCAAAGAATAGATGCCAA+AGG | - | chr5.4:33402432-33402451 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGATTCTTA+GGG | - | chr5.4:33402194-33402213 | None:intergenic | 35.0% | |
| AAGTACACAGAACCATAACT+TGG | - | chr5.4:33404636-33404655 | None:intergenic | 35.0% | |
| AATTGCCATGTACCAAGTTA+TGG | + | chr5.4:33404621-33404640 | MS.gene53182:intron | 35.0% | |
| ACGTCAAGGACTAAAAACAA+CGG | - | chr5.4:33401275-33401294 | None:intergenic | 35.0% | |
| AGGAACAGTTGATCTTGATA+AGG | + | chr5.4:33403684-33403703 | MS.gene53182:CDS | 35.0% | |
| AGTGGAAGAAAGAAGAAAAC+AGG | + | chr5.4:33405761-33405780 | MS.gene53182:CDS | 35.0% | |
| ATTACAAAATCATTGGCCGA+GGG | - | chr5.4:33401643-33401662 | None:intergenic | 35.0% | |
| CAAATATATGAGACGAAGAG+GGG | - | chr5.4:33405280-33405299 | None:intergenic | 35.0% | |
| CACTTGAAAACTCACAAGTT+AGG | - | chr5.4:33401476-33401495 | None:intergenic | 35.0% | |
| CAGTAGTTTCCAGCAATATA+TGG | - | chr5.4:33402392-33402411 | None:intergenic | 35.0% | |
| CATATATTGCTGGAAACTAC+TGG | + | chr5.4:33402390-33402409 | MS.gene53182:CDS | 35.0% | |
| CCTAAATTATCAGCATAGAC+AGG | - | chr5.4:33403176-33403195 | None:intergenic | 35.0% | |
| CCTGTCTATGCTGATAATTT+AGG | + | chr5.4:33403173-33403192 | MS.gene53182:intron | 35.0% | |
| CTACGAGTGTGTTAATGTTA+TGG | - | chr5.4:33403407-33403426 | None:intergenic | 35.0% | |
| GCTATCTGAAAATATGCTTC+AGG | - | chr5.4:33402949-33402968 | None:intergenic | 35.0% | |
| GCTGTGATATTGAATGAGTT+TGG | + | chr5.4:33401738-33401757 | MS.gene53182:CDS | 35.0% | |
| GTCACCGTAAGTATCATTAA+TGG | + | chr5.4:33402492-33402511 | MS.gene53182:intron | 35.0% | |
| TAAGCACTTGTGAGATTCTT+AGG | - | chr5.4:33402195-33402214 | None:intergenic | 35.0% | |
| TATTACAAAATCATTGGCCG+AGG | - | chr5.4:33401644-33401663 | None:intergenic | 35.0% | |
| TGATGAATTGCATACTTTGC+AGG | + | chr5.4:33404061-33404080 | MS.gene53182:CDS | 35.0% | |
| TTCAAAAATCTGGTTGGACA+TGG | + | chr5.4:33405205-33405224 | MS.gene53182:intron | 35.0% | |
| TTGATAAATGAAGGGGAAAG+TGG | + | chr5.4:33401786-33401805 | MS.gene53182:CDS | 35.0% | |
| TTGCACTGTTAAGCATAGTT+TGG | + | chr5.4:33401854-33401873 | MS.gene53182:CDS | 35.0% | |
| TTGTCAAGATCACTGAAGTA+TGG | - | chr5.4:33404588-33404607 | None:intergenic | 35.0% | |
| TTTGATCAGAACGATCACAA+AGG | - | chr5.4:33404954-33404973 | None:intergenic | 35.0% | |
| TTTGGCATCTATTCTTTGGT+TGG | + | chr5.4:33402431-33402450 | MS.gene53182:CDS | 35.0% | |
| ! | AATGAGTTTGGTGAGGAAAT+TGG | + | chr5.4:33401750-33401769 | MS.gene53182:CDS | 35.0% |
| ! | AATTGTGTTTCTACCGAAGT+AGG | + | chr5.4:33402864-33402883 | MS.gene53182:intron | 35.0% |
| ! | ATAATGTTGCTGCTTCTTTC+AGG | + | chr5.4:33403305-33403324 | MS.gene53182:intron | 35.0% |
| ! | ATTAGTTTGAATGCCATGAC+AGG | - | chr5.4:33402730-33402749 | None:intergenic | 35.0% |
| ! | CGGCCAATGATTTTGTAATA+TGG | + | chr5.4:33401644-33401663 | MS.gene53182:intron | 35.0% |
| ! | GATATTGAATGAGTTTGGTG+AGG | + | chr5.4:33401743-33401762 | MS.gene53182:CDS | 35.0% |
| ! | GTTACTAGCTCTTGGAATTT+AGG | - | chr5.4:33405183-33405202 | None:intergenic | 35.0% |
| ! | TGTCTCCAAGAACTATTTCT+TGG | - | chr5.4:33402697-33402716 | None:intergenic | 35.0% |
| ! | TTTGAAGTGTTACTAGCTCT+TGG | - | chr5.4:33405191-33405210 | None:intergenic | 35.0% |
| !! | AGCTCTTGGAATTTAGGTTT+TGG | - | chr5.4:33405177-33405196 | None:intergenic | 35.0% |
| !! | CTAACTTGTGAGTTTTCAAG+TGG | + | chr5.4:33401474-33401493 | MS.gene53182:intron | 35.0% |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | - | chr5.4:33400903-33400922 | None:intergenic | 35.0% |
| AACCGTCAAACTGTGTTATC+TGG | - | chr5.4:33404902-33404921 | None:intergenic | 40.0% | |
| AAGATCAACTGTTCCTGTCT+CGG | - | chr5.4:33403680-33403699 | None:intergenic | 40.0% | |
| AATCATGGCAGACTCGTATA+TGG | + | chr5.4:33403961-33403980 | MS.gene53182:intron | 40.0% | |
| AGCTTGTGCAGAGAAAAGAA+AGG | + | chr5.4:33401892-33401911 | MS.gene53182:CDS | 40.0% | |
| AGGTCCATTGCATAATGTTG+CGG | + | chr5.4:33402250-33402269 | MS.gene53182:intron | 40.0% | |
| ATGGATGTATACCGTTGCAA+AGG | + | chr5.4:33404017-33404036 | MS.gene53182:CDS | 40.0% | |
| ATGGCTAGAGGAGATTCTTT+GGG | + | chr5.4:33403980-33403999 | MS.gene53182:CDS | 40.0% | |
| CACCTTTGGCATCTATTCTT+TGG | + | chr5.4:33402427-33402446 | MS.gene53182:CDS | 40.0% | |
| CAGAACCATAACTTGGTACA+TGG | - | chr5.4:33404629-33404648 | None:intergenic | 40.0% | |
| CATTCAAGACTCCTTTGCAA+CGG | - | chr5.4:33404031-33404050 | None:intergenic | 40.0% | |
| GGACTAAAAACAACGGAGTT+TGG | - | chr5.4:33401268-33401287 | None:intergenic | 40.0% | |
| GGAGATTGCTAACACATAGA+TGG | - | chr5.4:33405259-33405278 | None:intergenic | 40.0% | |
| GGCATTCAGCCTAACAATTT+CGG | - | chr5.4:33401441-33401460 | None:intergenic | 40.0% | |
| TAAACTGCAGTCATGAAGGT+GGG | - | chr5.4:33403544-33403563 | None:intergenic | 40.0% | |
| TAAGCATGCTGCACATTTAG+AGG | + | chr5.4:33403582-33403601 | MS.gene53182:intron | 40.0% | |
| TAGGCTAGACCATATATTGC+TGG | + | chr5.4:33402380-33402399 | MS.gene53182:intron | 40.0% | |
| TATATGAGATTGTTCCGGCT+CGG | + | chr5.4:33405737-33405756 | MS.gene53182:CDS | 40.0% | |
| TATGGCTAGAGGAGATTCTT+TGG | + | chr5.4:33403979-33403998 | MS.gene53182:CDS | 40.0% | |
| TCAGATAAGGTAATCCAAGC+AGG | + | chr5.4:33402230-33402249 | MS.gene53182:intron | 40.0% | |
| TCTTTGGTTGGATGAACAGT+TGG | + | chr5.4:33402443-33402462 | MS.gene53182:CDS | 40.0% | |
| TGAACCGCAACATTATGCAA+TGG | - | chr5.4:33402257-33402276 | None:intergenic | 40.0% | |
| TGAGTAGGGACTAATACTCA+GGG | - | chr5.4:33400797-33400816 | None:intergenic | 40.0% | |
| TGCCAGATAACACAGTTTGA+CGG | + | chr5.4:33404897-33404916 | MS.gene53182:intron | 40.0% | |
| TGGTGCAGTTGTTGAAGAAT+GGG | + | chr5.4:33401806-33401825 | MS.gene53182:CDS | 40.0% | |
| TGTTGAATCTCAACAGCAAG+AGG | - | chr5.4:33400342-33400361 | None:intergenic | 40.0% | |
| TTGAGTAGGGACTAATACTC+AGG | - | chr5.4:33400798-33400817 | None:intergenic | 40.0% | |
| TTGGCATCTACTACCTACTT+CGG | - | chr5.4:33402880-33402899 | None:intergenic | 40.0% | |
| ! | ACAGACTAGGTAGGGTATTA+TGG | - | chr5.4:33403231-33403250 | None:intergenic | 40.0% |
| ! | ACATGATGAGCATTGTCTTG+TGG | + | chr5.4:33405809-33405828 | MS.gene53182:intron | 40.0% |
| ! | ACTCTCATCACTGGTTATCT+TGG | + | chr5.4:33400408-33400427 | MS.gene53182:CDS | 40.0% |
| ! | AGAACAAAGCATTCTCTGCT+AGG | - | chr5.4:33403862-33403881 | None:intergenic | 40.0% |
| ! | CTAGTGGATAAGCTCAGATA+AGG | + | chr5.4:33402217-33402236 | MS.gene53182:intron | 40.0% |
| !! | AAAAGGTAAATGGGTTACCG+TGG | - | chr5.4:33400445-33400464 | None:intergenic | 40.0% |
| !! | GAATGGGTTGAACTTGCTAA+TGG | + | chr5.4:33401822-33401841 | MS.gene53182:CDS | 40.0% |
| !! | GTTGATTTGGTATCTGCAGA+AGG | + | chr5.4:33403348-33403367 | MS.gene53182:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5.4:33404478-33404497 | MS.gene53182:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5.4:33404497-33404478 | None:intergenic | 40.0% |
| AAATGTTCGCTTCCAGCTCA+AGG | + | chr5.4:33402900-33402919 | MS.gene53182:CDS | 45.0% | |
| AACTCACAAGTTAGGATCCC+AGG | - | chr5.4:33401468-33401487 | None:intergenic | 45.0% | |
| AATCACGCACTTGTGTACTG+AGG | - | chr5.4:33402822-33402841 | None:intergenic | 45.0% | |
| ACACAGTTTGACGGTTACAC+AGG | + | chr5.4:33404906-33404925 | MS.gene53182:intron | 45.0% | |
| ACAGGTTGCAAGAGCTTTCA+AGG | - | chr5.4:33405938-33405957 | None:intergenic | 45.0% | |
| ACCATTCATCGGTGAAATCC+TGG | + | chr5.4:33405698-33405717 | MS.gene53182:intron | 45.0% | |
| AGATTCTTAGGGAGAGCTCA+TGG | - | chr5.4:33402183-33402202 | None:intergenic | 45.0% | |
| AGGAATAAGCTAACTGCCTC+TGG | + | chr5.4:33404830-33404849 | MS.gene53182:intron | 45.0% | |
| AGTACACTATTTATGCCCCG+TGG | - | chr5.4:33403778-33403797 | None:intergenic | 45.0% | |
| AGTCCTTGACGTCAGCTTAT+TGG | + | chr5.4:33401283-33401302 | MS.gene53182:intron | 45.0% | |
| ATAAGATCCGTCTTCACCAG+TGG | + | chr5.4:33404156-33404175 | MS.gene53182:intron | 45.0% | |
| ATCAACGATTCCTGCTACCA+CGG | + | chr5.4:33403758-33403777 | MS.gene53182:intron | 45.0% | |
| ATTGCTGGAAACTACTGGTG+TGG | + | chr5.4:33402395-33402414 | MS.gene53182:CDS | 45.0% | |
| CACAGTTTGACGGTTACACA+GGG | + | chr5.4:33404907-33404926 | MS.gene53182:intron | 45.0% | |
| CAGGAAATGAAGATGAGCCA+CGG | - | chr5.4:33402930-33402949 | None:intergenic | 45.0% | |
| CAGGTAAACTGCAGTCATGA+AGG | - | chr5.4:33403548-33403567 | None:intergenic | 45.0% | |
| CATAGACAGGGGAAGTTACT+TGG | - | chr5.4:33403163-33403182 | None:intergenic | 45.0% | |
| CATTATGCAATGGACCTGCT+TGG | - | chr5.4:33402247-33402266 | None:intergenic | 45.0% | |
| CTCACAAGTGCTTATGCTAG+TGG | + | chr5.4:33402201-33402220 | MS.gene53182:intron | 45.0% | |
| CTCAGTATAATCGCAACACG+CGG | - | chr5.4:33401317-33401336 | None:intergenic | 45.0% | |
| GCATTCTCTGCTAGGCATTA+TGG | - | chr5.4:33403854-33403873 | None:intergenic | 45.0% | |
| GTAAACTGCAGTCATGAAGG+TGG | - | chr5.4:33403545-33403564 | None:intergenic | 45.0% | |
| GTCCTTGACGTCAGCTTATT+GGG | + | chr5.4:33401284-33401303 | MS.gene53182:intron | 45.0% | |
| GTGGTGCAGTTGTTGAAGAA+TGG | + | chr5.4:33401805-33401824 | MS.gene53182:CDS | 45.0% | |
| TGAACTCTCAACATGGGAAG+AGG | + | chr5.4:33401712-33401731 | MS.gene53182:CDS | 45.0% | |
| TGAATCTCAACAGCAAGAGG+TGG | - | chr5.4:33400339-33400358 | None:intergenic | 45.0% | |
| TGCATAACCACTGGTGAAGA+CGG | - | chr5.4:33404166-33404185 | None:intergenic | 45.0% | |
| TTACTGCAGTATCGTAAGCG+TGG | - | chr5.4:33403482-33403501 | None:intergenic | 45.0% | |
| ! | AGAATAGATGCCAAAGGTGC+TGG | - | chr5.4:33402426-33402445 | None:intergenic | 45.0% |
| ! | ATCACTGGTTATCTTGGTGC+TGG | + | chr5.4:33400414-33400433 | MS.gene53182:CDS | 45.0% |
| ! | GAGCTGGAAGCGAACATTTT+TGG | - | chr5.4:33402899-33402918 | None:intergenic | 45.0% |
| ! | GTTTGGTGAGGAAATTGGAG+TGG | + | chr5.4:33401755-33401774 | MS.gene53182:CDS | 45.0% |
| !! | TCTTGGTGCTGGAAAATCCA+CGG | + | chr5.4:33400425-33400444 | MS.gene53182:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5.4:33404477-33404496 | MS.gene53182:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5.4:33404496-33404477 | None:intergenic | 45.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | + | chr5.4:33401132-33401151 | MS.gene53182:intron | 5.0% |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | + | chr5.4:33401131-33401150 | MS.gene53182:intron | 5.0% |
| !!! | TTTTTTTTAGATTTTATTTT+TGG | - | chr5.4:33401522-33401541 | None:intergenic | 5.0% |
| ACCATATGCATCTCCGAGAC+AGG | + | chr5.4:33403664-33403683 | MS.gene53182:CDS | 50.0% | |
| AGATGCAGTGTTCGGCAAAG+TGG | + | chr5.4:33402312-33402331 | MS.gene53182:intron | 50.0% | |
| ATAAGCTAACTGCCTCTGGC+TGG | + | chr5.4:33404834-33404853 | MS.gene53182:intron | 50.0% | |
| CAAGTTAGGATCCCAGGTCA+TGG | - | chr5.4:33401462-33401481 | None:intergenic | 50.0% | |
| GACGTCAGCTTATTGGGCAT+TGG | + | chr5.4:33401290-33401309 | MS.gene53182:intron | 50.0% | |
| GATGCAGTGTTCGGCAAAGT+GGG | + | chr5.4:33402313-33402332 | MS.gene53182:intron | 50.0% | |
| GCAGACTCGTATATGGCTAG+AGG | + | chr5.4:33403968-33403987 | MS.gene53182:intron | 50.0% | |
| GCCAGGATTTCACCGATGAA+TGG | - | chr5.4:33405702-33405721 | None:intergenic | 50.0% | |
| GTCAGCAACTCCTAGATGAC+TGG | + | chr5.4:33404870-33404889 | MS.gene53182:intron | 50.0% | |
| TAGGCTGAATGCCATGACCT+GGG | + | chr5.4:33401448-33401467 | MS.gene53182:intron | 50.0% | |
| TATTTATGCCCCGTGGTAGC+AGG | - | chr5.4:33403771-33403790 | None:intergenic | 50.0% | |
| TCAACGATTCCTGCTACCAC+GGG | + | chr5.4:33403759-33403778 | MS.gene53182:intron | 50.0% | |
| TCCTGTCTCGGAGATGCATA+TGG | - | chr5.4:33403668-33403687 | None:intergenic | 50.0% | |
| TCTCTGCACAAGCTGCTCAA+GGG | - | chr5.4:33401886-33401905 | None:intergenic | 50.0% | |
| TCTTTCTTCCACTTCCGAGC+CGG | - | chr5.4:33405754-33405773 | None:intergenic | 50.0% | |
| TGCCCAATAAGCTGACGTCA+AGG | - | chr5.4:33401289-33401308 | None:intergenic | 50.0% | |
| TGTGGCTAATCCAGCACCTT+TGG | + | chr5.4:33402413-33402432 | MS.gene53182:CDS | 50.0% | |
| TTAGGCTGAATGCCATGACC+TGG | + | chr5.4:33401447-33401466 | MS.gene53182:intron | 50.0% | |
| TTCATCGGTGAAATCCTGGC+AGG | + | chr5.4:33405702-33405721 | MS.gene53182:intron | 50.0% | |
| TTCTCTGCACAAGCTGCTCA+AGG | - | chr5.4:33401887-33401906 | None:intergenic | 50.0% | |
| TTGGTATCTGCAGAAGGCTC+TGG | + | chr5.4:33403354-33403373 | MS.gene53182:CDS | 50.0% | |
| ! | TGGAAGTGTGTTCGAACCCT+CGG | + | chr5.4:33401624-33401643 | MS.gene53182:intron | 50.0% |
| !! | GTTGGTGTCACTCTCATCAC+TGG | + | chr5.4:33400399-33400418 | MS.gene53182:CDS | 50.0% |
| CAACGATTCCTGCTACCACG+GGG | + | chr5.4:33403760-33403779 | MS.gene53182:intron | 55.0% | |
| CTGCAGTATCGTAAGCGTGG+CGG | - | chr5.4:33403479-33403498 | None:intergenic | 55.0% | |
| GCAACTCCTAGATGACTGGC+AGG | + | chr5.4:33404874-33404893 | MS.gene53182:intron | 55.0% | |
| TAGTTCTCTCACTGCCTGCC+AGG | - | chr5.4:33405719-33405738 | None:intergenic | 55.0% | |
| !! | AGAAGGCTCTGGAGCTCTAG+AGG | + | chr5.4:33403365-33403384 | MS.gene53182:CDS | 55.0% |
| !! | AGATTGTTCCGGCTCGGAAG+TGG | + | chr5.4:33405743-33405762 | MS.gene53182:CDS | 55.0% |
| !! | AGCTCTAGAGGAACTCGAGG+AGG | + | chr5.4:33403377-33403396 | MS.gene53182:CDS | 55.0% |
| !! | TGGAGCTCTAGAGGAACTCG+AGG | + | chr5.4:33403374-33403393 | MS.gene53182:CDS | 55.0% |
| CTGGCACCTGCCAGTCATCT+AGG | - | chr5.4:33404883-33404902 | None:intergenic | 60.0% | |
| !! | TTCCAGCTCAAGGAGCACCG+TGG | + | chr5.4:33402910-33402929 | MS.gene53182:CDS | 60.0% |
| AGCCACGGTGCTCCTTGAGC+TGG | - | chr5.4:33402915-33402934 | None:intergenic | 65.0% | |
| GACACGTGTCAGCCAGCCAG+AGG | - | chr5.4:33404849-33404868 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 33400312 | 33405960 | 33400312 | ID=MS.gene53182 |
| chr5.4 | mRNA | 33400312 | 33405960 | 33400312 | ID=MS.gene53182.t1;Parent=MS.gene53182 |
| chr5.4 | exon | 33400312 | 33400446 | 33400312 | ID=MS.gene53182.t1.exon1;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33400312 | 33400446 | 33400312 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33401696 | 33401913 | 33401696 | ID=MS.gene53182.t1.exon2;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33401696 | 33401913 | 33401696 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33402383 | 33402497 | 33402383 | ID=MS.gene53182.t1.exon3;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33402383 | 33402497 | 33402383 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33402886 | 33402975 | 33402886 | ID=MS.gene53182.t1.exon4;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33402886 | 33402975 | 33402886 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33403327 | 33403497 | 33403327 | ID=MS.gene53182.t1.exon5;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33403327 | 33403497 | 33403327 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33403586 | 33403705 | 33403586 | ID=MS.gene53182.t1.exon6;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33403586 | 33403705 | 33403586 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33403972 | 33404082 | 33403972 | ID=MS.gene53182.t1.exon7;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33403972 | 33404082 | 33403972 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33405724 | 33405805 | 33405724 | ID=MS.gene53182.t1.exon8;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33405724 | 33405805 | 33405724 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| chr5.4 | exon | 33405902 | 33405960 | 33405902 | ID=MS.gene53182.t1.exon9;Parent=MS.gene53182.t1 |
| chr5.4 | CDS | 33405902 | 33405960 | 33405902 | ID=cds.MS.gene53182.t1;Parent=MS.gene53182.t1 |
| Gene Sequence |
| Protein sequence |
